RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy4832
(770 letters)
>gnl|CDD|215497 PLN02919, PLN02919, haloacid dehalogenase-like hydrolase family
protein.
Length = 1057
Score = 43.7 bits (103), Expect = 4e-04
Identities = 42/146 (28%), Positives = 59/146 (40%), Gaps = 33/146 (22%)
Query: 227 LALSPADGHLYISDAEKHQILRVLSLESVADPSINWEVAVGSGERCIPGDETNCGDN--- 283
++LSP LYI+D+E I R L L++ G R + G + DN
Sbjct: 745 ISLSPDLKELYIADSESSSI-RALDLKT-------------GGSRLLAGGDPTFSDNLFK 790
Query: 284 -----GPALAAKLSHPKGLAIKADKTMFIADGTN--IRVVSP-EGIIHTLIGHHKHHNIW 335
G L HP G+ D +++AD N I+ + P + TL G K
Sbjct: 791 FGDHDGVGSEVLLQHPLGVLCAKDGQIYVADSYNHKIKKLDPATKRVTTLAGTGK----- 845
Query: 336 SPFNCHRSFPASTAQLQWPTGLALSP 361
+ F + A AQL P GLAL
Sbjct: 846 AGFKDGK---ALKAQLSEPAGLALGE 868
Score = 42.9 bits (101), Expect = 6e-04
Identities = 29/104 (27%), Positives = 46/104 (44%), Gaps = 17/104 (16%)
Query: 218 ATQVSYQYYLA-LSPADGHLYISDAEKHQILRVLSLESVADPSINWEVAVGSGERCIPGD 276
++V Q+ L L DG +Y++D+ H+I DP+ + G
Sbjct: 798 GSEVLLQHPLGVLCAKDGQIYVADSYNHKI-------KKLDPATK-------RVTTLAGT 843
Query: 277 ETNCGDNGPALAAKLSHPKGLAIKADKTMFIADGTN--IRVVSP 318
+G AL A+LS P GLA+ + +F+AD N IR +
Sbjct: 844 GKAGFKDGKALKAQLSEPAGLALGENGRLFVADTNNSLIRYLDL 887
Score = 36.4 bits (84), Expect = 0.062
Identities = 24/75 (32%), Positives = 32/75 (42%), Gaps = 10/75 (13%)
Query: 151 RTVSVVMGTGLQRPLVCKDCDGVARDARLLTPVALTSGPDGSLYVGDFN--LVRRLTP-- 206
+ V+ + GTG DG A A+L P L G +G L+V D N L+R L
Sbjct: 835 KRVTTLAGTG-----KAGFKDGKALKAQLSEPAGLALGENGRLFVADTNNSLIRYLDLNK 889
Query: 207 -EGNVFTVLQLSATQ 220
E L+L Q
Sbjct: 890 GEAAEILTLELKGVQ 904
Score = 36.0 bits (83), Expect = 0.10
Identities = 57/245 (23%), Positives = 92/245 (37%), Gaps = 59/245 (24%)
Query: 227 LALSPADGHLYISDAEKHQILRVLSLESVADPSINWEVAVGSG-ERCIPGD--ETNCGDN 283
+ P + +YI+ A +HQI WE + G R GD E N +
Sbjct: 688 VCFEPVNEKVYIAMAGQHQI---------------WEYNISDGVTRVFSGDGYERNLNGS 732
Query: 284 GPALAAKLSHPKGLAIKAD-KTMFIAD--GTNIRVVS-PEGIIHTLIGHHKH--HNIWSP 337
+ + P G+++ D K ++IAD ++IR + G L G N++
Sbjct: 733 SGT-STSFAQPSGISLSPDLKELYIADSESSSIRALDLKTGGSRLLAGGDPTFSDNLFK- 790
Query: 338 FNCHRSFPASTAQLQWPTGLALSPLDDSLHFIDDRVIFKLTN-DL---KVKIVAGIPLHC 393
F H S LQ P G+ + D ++ D K+ D +V +AG
Sbjct: 791 FGDHDG-VGSEVLLQHPLGVLCA--KDGQIYVADSYNHKIKKLDPATKRVTTLAG----- 842
Query: 394 RTGDKDKRDFKDKQSKTKKSTVQDDSVRASNMDLGSLTALAFSPTGDLYIADIDARKVNA 453
TG K FKD ++ + L LA G L++AD + +
Sbjct: 843 -TG---KAGFKDGKALKAQ--------------LSEPAGLALGENGRLFVADTNN---SL 881
Query: 454 LRVID 458
+R +D
Sbjct: 882 IRYLD 886
Score = 33.3 bits (76), Expect = 0.56
Identities = 28/105 (26%), Positives = 45/105 (42%), Gaps = 15/105 (14%)
Query: 169 DCDGVARDARLLTPVALTSGPDGSLYVGD-FN-LVRRLTPEGNVFTVL-----------Q 215
D DGV + L P+ + DG +YV D +N +++L P T L +
Sbjct: 793 DHDGVGSEVLLQHPLGVLCAKDGQIYVADSYNHKIKKLDPATKRVTTLAGTGKAGFKDGK 852
Query: 216 LSATQVSYQYYLALSPADGHLYISDAEKHQILRVLSLESVADPSI 260
Q+S LAL +G L+++D + ++R L L I
Sbjct: 853 ALKAQLSEPAGLALGE-NGRLFVADT-NNSLIRYLDLNKGEAAEI 895
Score = 32.1 bits (73), Expect = 1.4
Identities = 27/100 (27%), Positives = 47/100 (47%), Gaps = 17/100 (17%)
Query: 215 QLSATQVSYQYYLALSPADGHLYISDAEKHQILRVLSLESVADPSINWEVAVGS-GERCI 273
+L + + + LA+ + L+ISD+ ++I+ V D N+ V +GS GE +
Sbjct: 561 RLLTSPLKFPGKLAIDLLNNRLFISDSNHNRIV-------VTDLDGNFIVQIGSTGEEGL 613
Query: 274 PGDETNCGDNGPALAAKLSHPKGLAIKADKT-MFIADGTN 312
+G A + P+GLA A K +++AD N
Sbjct: 614 --------RDGSFEDATFNRPQGLAYNAKKNLLYVADTEN 645
>gnl|CDD|237282 PRK13055, PRK13055, putative lipid kinase; Reviewed.
Length = 334
Score = 31.5 bits (72), Expect = 1.4
Identities = 23/84 (27%), Positives = 32/84 (38%), Gaps = 7/84 (8%)
Query: 574 FLYSKNTSFGKLSTIT-DASGNKINF---LRDYSNVAQLQWPTGLALSPLDDSLHFIDDR 629
F + S G I DA + F + +N+ +L L L+ H D R
Sbjct: 197 FFLALTNSVGGFEQIVPDAKLDDGKFTLIIVKTANLFEL---LHLMALILNGGKHIDDPR 253
Query: 630 VIFKLTNDLKIRALKKGRFDVTYD 653
VI+ T+ L I L R V D
Sbjct: 254 VIYIKTSKLTIEPLGDDRLMVNLD 277
>gnl|CDD|223021 PHA03247, PHA03247, large tegument protein UL36; Provisional.
Length = 3151
Score = 32.2 bits (73), Expect = 1.5
Identities = 19/52 (36%), Positives = 24/52 (46%), Gaps = 2/52 (3%)
Query: 342 RSFPASTAQLQWPTGL-ALSPLDDSLHFIDDRVIFKLTNDLKVKIVAGIPLH 392
R F +L W G A +PL + RV F ND+ V +VAG P H
Sbjct: 2053 REFGCRWDELGWARGAAAPAPLAEPAGSRRPRVTFNE-NDVMVALVAGTPEH 2103
>gnl|CDD|225750 COG3209, RhsA, Rhs family protein [Cell envelope biogenesis, outer
membrane].
Length = 796
Score = 31.4 bits (71), Expect = 2.5
Identities = 10/36 (27%), Positives = 15/36 (41%)
Query: 651 TYDYDHLDRLSVRKDNYGNITQFFYNNHEYPTQVTH 686
TY YD +L+ + G + F Y+ VT
Sbjct: 239 TYTYDSAGQLTKVTNGSGRLLGFKYDATGLVESVTD 274
>gnl|CDD|162945 TIGR02604, Piru_Ver_Nterm, putative membrane-bound dehydrogenase
domain. All proteins that score above the trusted
cutoff score of 45 to this model are large proteins of
either Pirellula sp. 1 or Verrucomicrobium spinosum.
These proteins all contain, in addition to this domain,
several hundred residues of highly variable sequence,
and then a well-conserved C-terminal domain (TIGR02603)
that features a putative cytochrome c-type heme binding
motif CXXCH. The membrane-bound L-sorbosone
dehydrogenase from Acetobacter liquefaciens
(Gluconacetobacter liquefaciens) (SP|Q44091) is
homologous to this domain but lacks additional sequence
regions shared by members of this family and belongs to
a different clade of the larger family of homologs. It
and its closely related homologs are excluded from the
this model by scoring between the trusted (45) and noise
(18) cutoffs.
Length = 367
Score = 30.8 bits (70), Expect = 2.6
Identities = 11/16 (68%), Positives = 13/16 (81%)
Query: 182 PVALTSGPDGSLYVGD 197
PV +T GPDG+LYV D
Sbjct: 323 PVNVTVGPDGALYVSD 338
>gnl|CDD|143609 cd07585, nitrilase_7, Uncharacterized subgroup of the nitrilase
superfamily (putative class 13 nitrilases). The
nitrilase superfamily is comprised of nitrile- or
amide-hydrolyzing enzymes and amide-condensing enzymes,
which depend on a Glu-Lys-Cys catalytic triad. This
superfamily has been classified in the literature based
on global and structure based sequence analysis into
thirteen different enzyme classes (referred to as 1-13).
Class 13 represents proteins that at the time were
difficult to place in a distinct similarity group; this
subgroup represents either a new class or one that was
included previously in class 13. Members of this
superfamily generally form homomeric complexes, the
basic building block of which is a homodimer.
Length = 261
Score = 30.4 bits (69), Expect = 3.2
Identities = 9/42 (21%), Positives = 16/42 (38%), Gaps = 3/42 (7%)
Query: 428 GSLTALAFSPTGDLYIADIDARKVNALRVIDSTGRMFDFAGR 469
G + A S + +AD+D +N +R + R
Sbjct: 218 GRVLAETTSGGDGMVVADLDLDLINTVR---GRRWISFLRAR 256
>gnl|CDD|182084 PRK09800, PRK09800, putative hypoxanthine oxidase; Provisional.
Length = 956
Score = 29.8 bits (67), Expect = 7.1
Identities = 18/43 (41%), Positives = 23/43 (53%), Gaps = 5/43 (11%)
Query: 715 KYYIATDQCGTPV---MVFNQ-YGETVREIMRSPYGHIVYDSN 753
K+Y D CGTPV + Q YG T+R I S I+YD+
Sbjct: 832 KFYALLD-CGTPVNPELALGQIYGATLRAIGHSMSEEIIYDAE 873
>gnl|CDD|202638 pfam03452, Anp1, Anp1. The members of this family (Anp1, Van1 and
Mnn9) are membrane proteins required for proper Golgi
function. These proteins co-localise within the cis
Golgi, and that they are physically associated in two
distinct complexes.
Length = 270
Score = 29.1 bits (66), Expect = 7.3
Identities = 17/66 (25%), Positives = 26/66 (39%), Gaps = 11/66 (16%)
Query: 315 VVSPEGIIHTLIGHHKHHNIWSPFNCHRSFPASTAQLQ------WPTGLALSPLDDSLHF 368
V +P +I L+ H K ++ P N R P +Q W L D+L
Sbjct: 155 VETPPTLIEDLMSHDK--DVIVP-NVWRRLPDQLGDIQPYDLNSWVESEEGLKLADTL-- 209
Query: 369 IDDRVI 374
+D +I
Sbjct: 210 DEDDII 215
>gnl|CDD|132356 TIGR03313, Se_sel_red_Mo, probable selenate reductase,
molybdenum-binding subunit. Our comparative genomics
suggests this protein family to be a subunit of a
selenium-dependent molybdenum hydroxylase, although the
substrate is not specified. This protein is suggested by
Bebien, et al., to be the molybdenum-binding subunit of
a molydbopterin-containing selenate reductase. Xi, et
al, however, show that mutation of this gene in E. coli
conferred sensitivity to adenine, suggesting a defect in
purine interconversion. This finding, plus homology of
nearby genes in a 23-gene purine catabolism region in E.
coli to xanthine dehydrogase subunits suggests xanthine
dehydrogenase activity.
Length = 951
Score = 29.6 bits (66), Expect = 8.1
Identities = 20/43 (46%), Positives = 23/43 (53%), Gaps = 5/43 (11%)
Query: 715 KYYIATDQCGTPV---MVFNQ-YGETVREIMRSPYGHIVYDSN 753
K+Y D CGTPV + Q YG T+R I S IVYD N
Sbjct: 828 KFYALLD-CGTPVNPELALGQIYGATMRAIGHSMTEEIVYDDN 869
>gnl|CDD|218327 pfam04916, Phospholip_B, Phospholipase B. Phospholipase B (PLB)
catalyzes the hydrolytic cleavage of both acylester
bonds of glycerophospholipids. This family of PLB
enzymes has been identified in mammals, flies and
nematodes but not in yeast. In Drosophila this protein
was named LAMA for laminin ancestor since it is
expressed in the neuronal and glial precursors that
surround the lamina.
Length = 563
Score = 29.4 bits (66), Expect = 8.8
Identities = 12/49 (24%), Positives = 23/49 (46%), Gaps = 2/49 (4%)
Query: 545 PATNEIYVFNRYGQHITTRDMTSGKPRYSFLYSKNTSFGKLSTITDASG 593
A +++ + +IT DMT +Y++ S N + K + + SG
Sbjct: 364 DAPGTLWILEQLPGYITYSDMTWVLNKYTYWASYNIPYFK--NVYELSG 410
>gnl|CDD|184377 PRK13894, PRK13894, conjugal transfer ATPase TrbB; Provisional.
Length = 319
Score = 28.9 bits (65), Expect = 9.8
Identities = 20/62 (32%), Positives = 26/62 (41%), Gaps = 19/62 (30%)
Query: 282 DNGPALAAKLSHPKGLAIKADKTMFIADGT--------------NIRVVSPEGIIHTLIG 327
D GP L A L+ PK + I M ADG +RV + II T+ G
Sbjct: 21 DMGPELLAALNDPKTVEI-----MLNADGKLWQERLGEPMRCIGTLRVAQAQAIIETIAG 75
Query: 328 HH 329
+H
Sbjct: 76 YH 77
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.320 0.136 0.414
Gapped
Lambda K H
0.267 0.0672 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 39,042,080
Number of extensions: 3816549
Number of successful extensions: 3006
Number of sequences better than 10.0: 1
Number of HSP's gapped: 3003
Number of HSP's successfully gapped: 22
Length of query: 770
Length of database: 10,937,602
Length adjustment: 104
Effective length of query: 666
Effective length of database: 6,324,786
Effective search space: 4212307476
Effective search space used: 4212307476
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 63 (28.2 bits)