RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy4832
(770 letters)
>3tc9_A Hypothetical hydrolase; 6-bladed beta-propeller,
immunoglobulin-like, structural GEN joint center for
structural genomics, JCSG; 2.23A {Bacteroides
thetaiotaomicron}
Length = 430
Score = 97.9 bits (243), Expect = 8e-22
Identities = 34/193 (17%), Positives = 65/193 (33%), Gaps = 12/193 (6%)
Query: 184 ALTSGPDGSLYVGDFN--LVRRLTPEGNVFTVLQLSATQVSYQYYLALSPADGHLYISDA 241
A T +G LY +N V R T L + +++++ P+ + YI
Sbjct: 231 AETHPINGELYFNSWNAGQVFRYDFTTQETTPL-FTIQDSGWEFHIQFHPSGNYAYIVVV 289
Query: 242 EKHQILRVLSLESVADPSINWEVAVGSGER-CIPGDETNCGDNGPALAAKLSHPKGLAIK 300
+H ILR + + V G + + G + P + +P
Sbjct: 290 NQHYILRSDYDWKTKRLTTPYIVCGQQGAKDWVDGVGKKARMHAPRQGTFVKNPAYKGSS 349
Query: 301 ADKTMFIADGTN--IRVVSPEGIIHTLIGHHKHHNIWSPFNCHRS-FPASTAQLQWPTGL 357
+ + D N IR+++P+G + T G + + + A+ P G+
Sbjct: 350 DEYDFYFCDRENHCIRILTPQGRVTTFAG-----RGSNGTSGYNDGDLRQEARFNHPEGI 404
Query: 358 ALSPLDDSLHFID 370
+ D
Sbjct: 405 VYDEERECFFIGD 417
Score = 66.7 bits (162), Expect = 1e-11
Identities = 46/406 (11%), Positives = 103/406 (25%), Gaps = 73/406 (17%)
Query: 123 DVHHHYNFHEGILQKGDGSSLHLKHEFPRTVSVVMGTGLQRPLVCKDCDGVARDARLL-- 180
D+ EG ++ ++ V+ +GT DG D
Sbjct: 79 DIKLSILNDEGEEIANTEANEKFVYQKKMLVTTFLGTMYDGNTKYDLKDGPFDDCGGFGG 138
Query: 181 -TPVALTSGPDGSLYVGDFN-LVRRLTPEGNVFTVLQLSATQVSYQYYLALSPADGHLYI 238
++ LY+ R + E + + + +S + + + I
Sbjct: 139 AVWLSFDPKNHNHLYLVGEQHPTRLIDFEKEYVSTV---YSGLSKVRTICWTHEADSMII 195
Query: 239 SDAEKHQILRVLSLESVADPSINWEVAVGSGERCIPGDETNCGDNGPALAAKLSHPKGLA 298
++ + + + + G K + G
Sbjct: 196 TNDQNNNDRPNNYILT-----------------------RESGFKVITELTKGQNCNGAE 232
Query: 299 I-KADKTMFIADGTNIRVVSPEGIIHTLIGHHKHHNIWSPFNCHRSFPASTAQLQWPTGL 357
+ ++ +V + + + W +
Sbjct: 233 THPINGELYFNSWNAGQV-----------------FRYDFTTQETTPLFTIQDSGWEFHI 275
Query: 358 ALSPLDDSLHFIDDR--VIFKLTNDLKVKIVAGIPLHCRTGDKDKRDFKDKQSKTKKSTV 415
P + + + I + D K K + + C G + +D+ D K +
Sbjct: 276 QFHPSGNYAYIVVVNQHYILRSDYDWKTKRLTTPYIVC--GQQGAKDWVDGVGKKAR--- 330
Query: 416 QDDSVRASNMDLGSLTALAFSPTGDLYIADIDARKVNALRVIDSTGRMFDFAGRWQSDKK 475
+ + S D Y D + + +R++ GR+ FAGR +
Sbjct: 331 --MHAPRQGTFVKNPAYKGSSDEYDFYFCDREN---HCIRILTPQGRVTTFAGRGSNGT- 384
Query: 476 NCNTTNCAEFEKNSKETLLTSTARFTSISALSVSPDG-VVNVADQG 520
+ L ARF + + + D+
Sbjct: 385 -----------SGYNDGDLRQEARFNHPEGIVYDEERECFFIGDRE 419
Score = 47.0 bits (111), Expect = 1e-05
Identities = 46/375 (12%), Positives = 88/375 (23%), Gaps = 71/375 (18%)
Query: 261 NWEVAVGSGERCIPGDETNCGDNGPALAAKLSHPKGLAIKAD--KTMFIADGTN-IRVVS 317
V G + + D L+ +++ + R++
Sbjct: 106 KMLVTTFLGTMYDGNTKYDLKDGPFDDCGGFGGAVWLSFDPKNHNHLYLVGEQHPTRLID 165
Query: 318 PE-GIIHTLIGHHKHHNIWSPFNCHRSFPASTAQLQWPTGLALSPLDDSLHFIDDRVIFK 376
E + T+ A T + + + + FK
Sbjct: 166 FEKEYVSTVYS--------GLSKVRTICWTHEADSMIITNDQNNNDRPNNYILTRESGFK 217
Query: 377 LTNDL-KVKIVAGIPLHCRTGDKDKRDFKDKQSKTKKSTVQDDSVRASNMDLGSLTALAF 435
+ +L K + G H G+ + Q T Q+ + + D G + F
Sbjct: 218 VITELTKGQNCNGAETHPINGELYFNSWNAGQVFRYDFTTQETTPLFTIQDSGWEFHIQF 277
Query: 436 SPTGD-LYIADIDARKVNALRVIDSTGRMFDFAGRWQSDKKNCNTTNCAEFEKNSKETLL 494
P+G+ YI ++ + + D + K L
Sbjct: 278 HPSGNYAYIVVVNQ---HYILRSDY----------------------------DWKTKRL 306
Query: 495 TSTARFTSISALSVSPDGVVNVADQGSLHILALQHYLPTHDEHGEFKIPYPATNEIYVFN 554
T+ DGV A + + Y +
Sbjct: 307 TTPYIVCGQQGAKDWVDGVGKKARMHAPRQGTFVK--------NPAYKGSSDEYDFYFCD 358
Query: 555 RYGQHITTRDMTSGKPRYSFLYSKNTSFGKLSTITDASGNKINFLRD--YSNVAQLQWPT 612
R I T G+++T N + D A+ P
Sbjct: 359 RENHCIR----------------ILTPQGRVTTFAGRGSNGTSGYNDGDLRQEARFNHPE 402
Query: 613 GLALSPLDDSLHFID 627
G+ + D
Sbjct: 403 GIVYDEERECFFIGD 417
>3hrp_A Uncharacterized protein; NP_812590.1, structural genomics protein
of unknown function structural genomics; HET: MSE; 1.70A
{Bacteroides thetaiotaomicron vpi-5482}
Length = 409
Score = 94.3 bits (234), Expect = 1e-20
Identities = 44/362 (12%), Positives = 87/362 (24%), Gaps = 74/362 (20%)
Query: 133 GILQKGDGSSLHLKHEF----PRTVSVVMGTGLQRPLVCKDCDGVARDARLLTPVALTSG 188
I DG + F + VS + G+ + DG A+ + +
Sbjct: 84 RIKVIVDGKEVTTDGTFKYEQAQNVSTISGSASKDGND----DGDLASAKFKYMWGIAAV 139
Query: 189 PDGSLYVGDF--NLVRRLTPEGNVFTVLQLS--------ATQVSYQYYLALSPADGHLYI 238
+ ++ VR ++ + N T + Y + +Y+
Sbjct: 140 GNNTVLAYQRDDPRVRLISVDDNKVTTVHPGFKGGKPAVTKDKQRVYSIGWE-GTHTVYV 198
Query: 239 SDAEKHQILRVLSLESVA----------DPSINWEVAVGSGERCIPGDETNC------GD 282
+ D + W V S + +
Sbjct: 199 YMKASGWAPTRIGQLGSTFSGKIGAVALDETEEWLYFVDSNKNFGRFNVKTQEVTLIKQL 258
Query: 283 NGPALAAKLSHPKGLAIKADKTMFIADGTN--IRVVSPEGIIHTLIGHHKHHNIWSPFNC 340
P + D +++D + ++P+G G +
Sbjct: 259 ELSGSLGTNPGPYLIYYFVDSNFYMSDQNLSSVYKITPDGECEWFCG-----SATQKT-- 311
Query: 341 HRSFPASTAQLQWPTGLALSPLDDSLHFIDD---RVIFKL-TNDLKVKIVAGIPLHCRTG 396
+ A P G+ + D + + +D + KL D V VAG
Sbjct: 312 VQDGLREEALFAQPNGMTVDE-DGNFYIVDGFKGYCLRKLDILDGYVSTVAGQVDVASQI 370
Query: 397 DKDKRDFKDKQSKTKKSTVQDDSVRASNMDLGSLTALAFSPTGDLYIADIDARKVNALRV 456
D + + G +IA+ A+R
Sbjct: 371 DGT----------------------PLEATFNYPYDICYDGEGGYWIAE---AWGKAIRK 405
Query: 457 ID 458
Sbjct: 406 YA 407
Score = 73.5 bits (180), Expect = 6e-14
Identities = 30/250 (12%), Positives = 74/250 (29%), Gaps = 21/250 (8%)
Query: 278 TNCGDNGPALAAKLSHPKGLAIKADKTMFIADGTN--IRVVSPEGIIHTLIGHHKHHNIW 335
+ D+G +AK + G+A + T+ + +R++S + T +
Sbjct: 117 KDGNDDGDLASAKFKYMWGIAAVGNNTVLAYQRDDPRVRLISVDDNKVTTVHPGFKGGKP 176
Query: 336 SPFNCHRSFPASTAQLQWPTGLALSPLDDSLHFIDDRVIFKLTNDLKVKIVAGIPLHCRT 395
+ + S T ++ + + +
Sbjct: 177 A-VTKDKQRVYSIGWEGTHTVYVYMKASGWAPTRIGQLGSTFSGKIGAVALDETEEWLYF 235
Query: 396 GDKDKRDFKDKQSKTKKSTVQDDSVRASNMDLGSLTALAFSPTGDLYIADIDARKVNALR 455
D +K + + + ++ + S + + + Y++D + +++
Sbjct: 236 VDSNKNFGRFNVKTQEVTLIKQLELSGSLGTNPGPYLIYYFVDSNFYMSDQNL---SSVY 292
Query: 456 VIDSTGRMFDFAGRWQSDKKNCNTTNCAEFEKNSKETLLTSTARFTSISALSVSPDGVVN 515
I G F G +K ++ L A F + ++V DG
Sbjct: 293 KITPDGECEWFCGSAT--------------QKTVQDGLREE-ALFAQPNGMTVDEDGNFY 337
Query: 516 VADQGSLHIL 525
+ D + L
Sbjct: 338 IVDGFKGYCL 347
Score = 71.5 bits (175), Expect = 3e-13
Identities = 28/164 (17%), Positives = 49/164 (29%), Gaps = 28/164 (17%)
Query: 171 DGVARDARLLTPVALTSGPDGSLYVGDF--NLVRRLTPEGNVFTVL-----------QLS 217
+ P + D + Y+ D + V ++TP+G
Sbjct: 259 ELSGSLGTNPGPYLIYYFVDSNFYMSDQNLSSVYKITPDGECEWFCGSATQKTVQDGLRE 318
Query: 218 ATQVSYQYYLALSPADGHLYISDAEKHQILRVLSLESVADPSINWEVAVGSGERCIPGDE 277
+ + + DG+ YI D K LR L + G + D
Sbjct: 319 EALFAQPNGMTVDE-DGNFYIVDGFKGYCLRKLDI-----LDGYVSTVAGQVDVASQID- 371
Query: 278 TNCGDNGPALAAKLSHPKGLAIKADKTMFIADGTN--IRVVSPE 319
G L A ++P + + +IA+ IR + E
Sbjct: 372 ------GTPLEATFNYPYDICYDGEGGYWIAEAWGKAIRKYAVE 409
Score = 37.6 bits (87), Expect = 0.014
Identities = 26/240 (10%), Positives = 65/240 (27%), Gaps = 29/240 (12%)
Query: 545 PATNEIYVFNRYGQHITTRDMTSGKPRYSFLYSKNTSFGKLSTITDASGNKINFLRDYSN 604
+ ++Y + + ++T Y + ++ I D + Y
Sbjct: 45 KSKVKVYFVDEAAERLSTVIGIDNNTLYCLAPRQLPGGNRIKVIVDGKEVTTDGTFKYEQ 104
Query: 605 V----------------------AQLQWPTGLALSPLDDSLHFIDD-----RVIFKLTND 637
A+ ++ G+A ++++ R+I N
Sbjct: 105 AQNVSTISGSASKDGNDDGDLASAKFKYMWGIAAVG-NNTVLAYQRDDPRVRLISVDDNK 163
Query: 638 LKIRALKKGRFDVTYDYDHLDRLSVRKDNYGNITQFFYNNHEYPTQVTHIYSPRYGKLIS 697
+ D S+ + + + + PT++ + S GK+ +
Sbjct: 164 VTTVHPGFKGGKPAVTKDKQRVYSIGWEGTHTVYVYMKASGWAPTRIGQLGSTFSGKIGA 223
Query: 698 LVYDERGFLIFAQMFRHKYYIATDQCGTPVMVFNQYGETVREIMRSPYGHIVYDSNPYIY 757
+ DE ++ + + ++ PY I Y + Y
Sbjct: 224 VALDETEEWLYFVDSNKNFGRFNVKTQEVTLIKQLELSGSLGTNPGPYL-IYYFVDSNFY 282
>3kya_A Putative phosphatase; structural genomics, joint center for
structural genomics, JCSG, protein structure initiative,
PS hydrolase; HET: MSE; 1.77A {Bacteroides
thetaiotaomicron}
Length = 496
Score = 80.4 bits (197), Expect = 7e-16
Identities = 38/253 (15%), Positives = 77/253 (30%), Gaps = 44/253 (17%)
Query: 171 DGVARDARLLTPVALTSGP-DGSLYVGDF--NLVRRLTPEGNVFTVL------------- 214
+ A T P +G LY + V RL T+
Sbjct: 238 SDIQLIAAYKQCNGATIHPINGELYFNSYEKGQVFRLDLVDYFKTIKNGGSWDPIVKNNP 297
Query: 215 -----QLSATQVSYQYYLALSPADGHLYISDAEKHQILRVLSLESVADPSINWEVAVGSG 269
+ S+++ + + P + Y H +R E + + G
Sbjct: 298 NTFKQLFTIADPSWEFQIFIHPTGKYAYFGVINNHYFMRSDYDEIKKEFITPYNFVGGYK 357
Query: 270 ERCIPGDETNCGDNGPALAAKLSHP--------KGLAIKADKTMFIADGTN--IRVVSPE 319
+ G + A++++P + + + D N +R V+PE
Sbjct: 358 Q---SGY-----RDDVGTEARMNNPCQGVFVKNPDYTGEEEYDFYFVDRLNFCVRKVTPE 409
Query: 320 GIIHTLIGH--HKHHNIWSPFNCHRSFPASTAQLQWPTGLALSPLDDSLHFID--DRVIF 375
GI+ T G + + A+ + +GL + + + D I
Sbjct: 410 GIVSTYAGRGASTSLADGNQWGTDDGDLREVARFRDVSGLVYDDVKEMFYVHDQVGHTIR 469
Query: 376 KLTNDLKVKIVAG 388
++ + + + VAG
Sbjct: 470 TISME-QEENVAG 481
Score = 39.5 bits (91), Expect = 0.004
Identities = 38/380 (10%), Positives = 87/380 (22%), Gaps = 74/380 (19%)
Query: 279 NCGDNGPALAAKLSHPKGLAIKADKTM--FIADGTN--IRVVSPE-GIIHTLIGHHKHHN 333
S LA +I + I+++ + ++ + +
Sbjct: 126 PFDGPEGVKCCGFSDNGRLAFDPLNKDHLYICYDGHKAIQLIDLKNRMLSSPLN------ 179
Query: 334 IWSPFNCHRSFPASTAQLQWPTGLALSPLDDSLHFIDDRVIFKLTNDLKVKIVAGIPLHC 393
+T +A + + + +I + D K + +
Sbjct: 180 ------------INTIPTNRIRSIAFNKKIEGYADEAEYMIVAIDYDGKGDESPSVYIIK 227
Query: 394 RTGDKDKRDFKDKQSKTKKSTVQDDSVRASNMDLGSLTALAFSPTGDLYIADIDARKVNA 453
R D D ++ A G+LY +
Sbjct: 228 RNADGTFDD--------------RSDIQLIAAYKQCNGATIHPINGELYFNSYEK---GQ 270
Query: 454 LRVIDSTGRMFDFAGRWQSDKKNCNTTNCAEFEKNSKETLLTSTARFTSISALSVSPDGV 513
+ +D D N N + + A + + + P G
Sbjct: 271 VFRLDLVDYFKTIKNGGSWDPIVKNNPNTFKQL--------FTIADPSWEFQIFIHPTGK 322
Query: 514 VN-VADQGSLHILALQHYLPTHDEHGEFKIPYPATNEIYV--------FNRYGQHITTRD 564
+ + + + + + Y N Q + ++
Sbjct: 323 YAYFGVINNHYFMRSDYDEIKKEFITPYNFVGGYKQSGYRDDVGTEARMNNPCQGVFVKN 382
Query: 565 MTSGKPRYSFLY---SKN------TSFGKLSTI---TDASGNKINFLRDYSN-----VAQ 607
Y N T G +ST ++ + VA+
Sbjct: 383 PDYTGEEEYDFYFVDRLNFCVRKVTPEGIVSTYAGRGASTSLADGNQWGTDDGDLREVAR 442
Query: 608 LQWPTGLALSPLDDSLHFID 627
+ +GL + + + D
Sbjct: 443 FRDVSGLVYDDVKEMFYVHD 462
>2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic
resistance, E mechanism, virginiamycin B hydrolase
streptogramin; HET: MSE; 1.65A {Staphylococcus aureus}
PDB: 2z2o_A 2z2p_A*
Length = 299
Score = 77.8 bits (192), Expect = 9e-16
Identities = 35/371 (9%), Positives = 92/371 (24%), Gaps = 125/371 (33%)
Query: 182 PVALTSGPDGSLYVGDF--NLVRRLTPEGNVFTVLQLSATQVSYQYYLALSPADGHLYIS 239
P +T G +++ N++ + +G + T + L +S DG ++ +
Sbjct: 17 PYGITVSDKGKVWITQHKANMISCINLDGKITEYP--LPTPDAKVMCLTISS-DGEVWFT 73
Query: 240 DAEKHQILRVLSLESVADPSINWEVAVGSGERCIPGDETNCGDNGPALAAKLSHPKGLAI 299
+ ++I R+ + S P G+
Sbjct: 74 ENAANKIGRI-------TKKGIIKEYTLPNP--------------------DSAPYGITE 106
Query: 300 KADKTMFIADGTN--IRVVSPEGIIHTLIGHHKHHNIWSPFNCHRSFPASTAQLQWPTGL 357
+ ++ + I ++ +G I + +P+ +
Sbjct: 107 GPNGDIWFTEMNGNRIGRITDDGKIREY--------------------ELPNKGSYPSFI 146
Query: 358 ALSPLDDSLHFID--DRVIFKLTNDLKVKIVAGIPLHCRTGDKDKRDFKDKQSKTKKSTV 415
L D++L F + + I ++T +
Sbjct: 147 TLGS-DNALWFTENQNNAIGRITESGDITEFKIPT------------------------- 180
Query: 416 QDDSVRASNMDLGSLTALAFSPTGDLYIADIDARKVNALRVIDSTGRMFDFAGRWQSDKK 475
+ L+ +I N + I ++G + +F
Sbjct: 181 ----------PASGPVGITKGNDDALWFVEIIG---NKIGRITTSGEITEFKI------- 220
Query: 476 NCNTTNCAEFEKNSKETLLTSTARFTSISALSVSPDGVVNVADQGS--LHILALQHYLPT 533
A++ + + G+ + L + +
Sbjct: 221 ---------------------PTPNARPHAITAGAGIDLWFTEWGANKIGRLTSNNIIEE 259
Query: 534 HDEHGEFKIPY 544
+ + P+
Sbjct: 260 YPIQIKSAEPH 270
Score = 51.6 bits (124), Expect = 3e-07
Identities = 19/141 (13%), Positives = 43/141 (30%), Gaps = 32/141 (22%)
Query: 182 PVALTSGPDGSLYVGDF--NLVRRLTPEGNVFTVLQLSATQVSYQYYLALSPADGHLYIS 239
PV +T G D +L+ + N + R+T G + T + + + L+ +
Sbjct: 185 PVGITKGNDDALWFVEIIGNKIGRITTSGEITEF--KIPTPNARPHAITAGA-GIDLWFT 241
Query: 240 DAEKHQILRVLSLESVADPSINWEVAVGSGERCIPGDETNCGDNGPALAAKLSHPKGLAI 299
+ ++I R+ + E + + P G+
Sbjct: 242 EWGANKIGRL-------TSNNIIEEYPIQIK--------------------SAEPHGICF 274
Query: 300 KADKTMFIADGTNIRVVSPEG 320
+ F + I ++
Sbjct: 275 DGETIWFAMECDKIGKLTLIK 295
Score = 50.8 bits (122), Expect = 7e-07
Identities = 26/262 (9%), Positives = 60/262 (22%), Gaps = 85/262 (32%)
Query: 286 ALAAKLSHPKGLAIKADKTMFIADGTN--IRVVSPEGIIHTLIGHHKHHNIWSPFNCHRS 343
L + + P G+ + ++I I ++ +G I
Sbjct: 9 NLTNQDTGPYGITVSDKGKVWITQHKANMISCINLDGKITEY------------------ 50
Query: 344 FPASTAQLQWPTGLALSPLDDSLHFID--DRVIFKLTNDLKVKIVAGIPLHCRTGDKDKR 401
L +S D + F + I ++T +K
Sbjct: 51 --PLPTPDAKVMCLTISS-DGEVWFTENAANKIGRITKKGIIKEYTL------------- 94
Query: 402 DFKDKQSKTKKSTVQDDSVRASNMDLGSLTALAFSPTGDLYIADIDARKVNALRVIDSTG 461
+ + P GD++ +++ N + I G
Sbjct: 95 ----------------------PNPDSAPYGITEGPNGDIWFTEMNG---NRIGRITDDG 129
Query: 462 RM----------------FDFAGR-WQSDKKNCNTTNC-AEFEKNSKETLLTSTARFTSI 503
++ W ++ N N ++ T +
Sbjct: 130 KIREYELPNKGSYPSFITLGSDNALWFTE----NQNNAIGRITESGDITEFKIPTPASGP 185
Query: 504 SALSVSPDGVVNVADQGSLHIL 525
++ D + + I
Sbjct: 186 VGITKGNDDALWFVEIIGNKIG 207
>2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A
{Staphylococcus cohnii}
Length = 300
Score = 76.6 bits (189), Expect = 2e-15
Identities = 41/364 (11%), Positives = 92/364 (25%), Gaps = 115/364 (31%)
Query: 182 PVALTSGPDGSLYVGDF--NLVRRLTPEGNVFTVLQLSATQVSYQYYLALSPADGHLYIS 239
P +TS DG ++ N + L G + T + L +S G ++ +
Sbjct: 22 PYGITSSEDGKVWFTQHKANKISSLDQSGRIKEF--EVPTPDAKVMCLIVSS-LGDIWFT 78
Query: 240 DAEKHQILRVLSLESVADPSINWEVAVGSGERCIPGDETNCGDNGPALAAKLSHPKGLAI 299
+ ++I ++ + L S P G+
Sbjct: 79 ENGANKIGKL-------SKKGGFTEY--------------------PLPQPDSGPYGITE 111
Query: 300 KADKTMFIADGTN--IRVVSPEGIIHTLIGHHKHHNIWSPFNCHRSFPASTAQLQWPTGL 357
+ ++ I ++ +G I+ + +P +
Sbjct: 112 GLNGDIWFTQLNGDRIGKLTADGTIYEY--------------------DLPNKGSYPAFI 151
Query: 358 ALSPLDDSLHFID--DRVIFKLTNDLKVKIVAGIPLHCRTGDKDKRDFKDKQSKTKKSTV 415
L D++L F + + I ++TN K++
Sbjct: 152 TLGS-DNALWFTENQNNSIGRITNTGKLEEYPLPT------------------------- 185
Query: 416 QDDSVRASNMDLGSLTALAFSPTGDLYIADIDARKVNALRVIDSTGRM------------ 463
+ + + G L+ +I N + I +TG +
Sbjct: 186 ----------NAAAPVGITSGNDGALWFVEIMG---NKIGRITTTGEISEYDIPTPNARP 232
Query: 464 ----FDFAGR-WQSDKKNCNTTNCAEFEKNSKETLLTSTARFTSISALSVSPDGVVNVAD 518
W ++ ++ ++ DG V A
Sbjct: 233 HAITAGKNSEIWFTEWGANQIG---RITNDNTIQEYQLQTENAEPHGITFGKDGSVWFAL 289
Query: 519 QGSL 522
+ +
Sbjct: 290 KCKI 293
Score = 59.6 bits (145), Expect = 9e-10
Identities = 26/212 (12%), Positives = 56/212 (26%), Gaps = 55/212 (25%)
Query: 173 VARDARLLTPVALTSGPDGSLYVGDF--NLVRRLTPEGNVFTVLQLSATQVSYQYYLALS 230
+ P +T G D +L+ + N + R+T G + T + +
Sbjct: 139 YDLPNKGSYPAFITLGSDNALWFTENQNNSIGRITNTGKLEEY--PLPTNAAAPVGITSG 196
Query: 231 PADGHLYISDAEKHQILRVLSLESVADPSINWEVAVGSGERCIPGDETNCGDNGPALAAK 290
DG L+ + ++I R+ + +
Sbjct: 197 N-DGALWFVEIMGNKIGRI-------TTTGEISEY--------------------DIPTP 228
Query: 291 LSHPKGLAIKADKTMFIADGTN--IRVVSPEGIIHTLIGHHKHHNIWSPFNCHRSFPAST 348
+ P + + ++ + I ++ + I
Sbjct: 229 NARPHAITAGKNSEIWFTEWGANQIGRITNDNTIQEY--------------------QLQ 268
Query: 349 AQLQWPTGLALSPLDDSLHFIDDRVIFKLTND 380
+ P G+ D S+ F I KL +
Sbjct: 269 TENAEPHGITFGK-DGSVWFALKCKIGKLNLN 299
Score = 45.0 bits (107), Expect = 5e-05
Identities = 39/378 (10%), Positives = 91/378 (24%), Gaps = 118/378 (31%)
Query: 286 ALAAKLSHPKGLAIKADKTMFIADGTN--IRVVSPEGIIHTLIGHHKHHNIWSPFNCHRS 343
L+ S P G+ D ++ I + G I
Sbjct: 14 NLSIPDSGPYGITSSEDGKVWFTQHKANKISSLDQSGRIKEF------------------ 55
Query: 344 FPASTAQLQWPTGLALSPLDDSLHFID--DRVIFKLTNDLKVKIVAGIPLHCRTGDKDKR 401
L +S + F + I KL+
Sbjct: 56 --EVPTPDAKVMCLIVSS-LGDIWFTENGANKIGKLSKKGGFTEYPLPQ----------- 101
Query: 402 DFKDKQSKTKKSTVQDDSVRASNMDLGSLTALAFSPTGDLYIADIDARKVNALRVIDSTG 461
+ GD++ ++ + + + + G
Sbjct: 102 ------------------------PDSGPYGITEGLNGDIWFTQLNG---DRIGKLTADG 134
Query: 462 RMFDFAGRWQSDKKNCNTTNCAEFEKNSKETLLTSTARFTSISALSVSPDGVVNVADQGS 521
++++ + + + +++ D + + +
Sbjct: 135 TIYEYDL----------------------------PNKGSYPAFITLGSDNALWFTENQN 166
Query: 522 --LHILALQHYLPTHDEHGEFKIPY--------------PATNEIYVFNRYGQHITTRDM 565
+ + L + P N+I G+ I+ D+
Sbjct: 167 NSIGRITNTGKLEEYPLPTNAAAPVGITSGNDGALWFVEIMGNKIGRITTTGE-ISEYDI 225
Query: 566 TSGKPRYSFLYSKNTSFGKLSTITDASGNKI------NFLRDYSNVAQLQWPTGLALSPL 619
+ R + + ++ T+ N+I N +++Y + P G+
Sbjct: 226 PTPNARPHAITA--GKNSEI-WFTEWGANQIGRITNDNTIQEYQLQTENAEPHGITFGK- 281
Query: 620 DDSLHFIDDRVIFKLTND 637
D S+ F I KL +
Sbjct: 282 DGSVWFALKCKIGKLNLN 299
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 77.6 bits (190), Expect = 8e-15
Identities = 105/699 (15%), Positives = 205/699 (29%), Gaps = 188/699 (26%)
Query: 125 HHHYNFHEGILQKGDGSSL-HLKHEFPRTVSVVMGTGLQRPLVCK-DCDGVARD------ 176
HHH +F G Q L + F + + ++ K + D +
Sbjct: 4 HHHMDFETGEHQYQYKDILSVFEDAFVDNFDCKDVQDMPKSILSKEEIDHIIMSKDAVSG 63
Query: 177 ARLLTPVALTSGPDG-SLYVG-----DFN-LVRRLTPEGNVFTVLQLSATQVSYQYYLAL 229
L L+ + +V ++ L+ + E Q S Y
Sbjct: 64 TLRLFWTLLSKQEEMVQKFVEEVLRINYKFLMSPIKTEQR-----QPSMMTRMYIEQRDR 118
Query: 230 SPADGHLY----ISDAEKHQILR--VLSLESVADPSINWEVAV----GSGERCIPGDETN 279
D ++ +S + + LR +L L P+ N V + GSG+
Sbjct: 119 LYNDNQVFAKYNVSRLQPYLKLRQALLEL----RPAKN--VLIDGVLGSGKTW------- 165
Query: 280 CGDNGPALAAKLSHPKGLAIKADKTMF-IADGTNIRVVSPEGIIHTL--IGHHKHHNIWS 336
+A + + K D +F + SPE ++ L + + N S
Sbjct: 166 -------VALDVCLSYKVQCKMDFKIFWLNLK---NCNSPETVLEMLQKLLYQIDPNWTS 215
Query: 337 PFNCHRSFPASTAQLQ-WPTGL-ALSPLDDSLHFIDDRVIFKLTNDLKVKIVAGIPLHCR 394
+ + +Q L P ++ L + + V + K L C+
Sbjct: 216 RSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLN-V-----QN--AKAWNAFNLSCK 267
Query: 395 ----TGDKDKRDFKDKQSKTKKSTVQDDSVRASNMDLGSLTALAFS-PTGDLYIADIDAR 449
T K DF T ++ S+ + ++ SL DL +
Sbjct: 268 ILLTTRFKQVTDFLSAA-TTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDL---PREVL 323
Query: 450 KVNALRVIDSTGRMF-DFAGRWQSDKKNCNTTNCAEFEKNSKETLLTSTARFTSISALSV 508
N + D W ++ + + L +T +S++ L
Sbjct: 324 TTNPR-RLSIIAESIRDGLATWD------------NWKHVNCDKL--TTIIESSLNVLE- 367
Query: 509 SPDGVVNVADQGSLHILALQHYLPTHDEHGEFKIPYPATNEIYVFNRYGQHITTRDMTSG 568
P E++ + + + VF HI T
Sbjct: 368 -PA---------------------------EYRKMF---DRLSVF-PPSAHIPTI----- 390
Query: 569 KPRYSFLYSKNTSFGKLSTITDASGNKINFLRDYSNVAQLQWPTGLALSPLDDSLHFIDD 628
S ++ I +N L YS V + P +S + I
Sbjct: 391 --LLSLIWFD--------VIKSDVMVVVNKLHKYSLVEK--QPKESTIS-----IPSIYL 433
Query: 629 RVIFKLTNDLKIRALKKGRFDVTYDYDHLDRLSVRKDNYGNITQFFYNNHEYPTQVTHIY 688
+ KL N+ + +++ +D D + D Y FY++ + H+
Sbjct: 434 ELKVKLENEYALHRSIVDHYNIPKTFDSDDLIPPYLDQY------FYSHIGH-----HLK 482
Query: 689 SPRYGKLISL---VYDERGFL-------------------IFAQMFRHKYYIATDQCGTP 726
+ + + ++L V+ + FL Q+ +K YI D
Sbjct: 483 NIEHPERMTLFRMVFLDFRFLEQKIRHDSTAWNASGSILNTLQQLKFYKPYI-CDNDPKY 541
Query: 727 VMVFNQYGETVRE----IMRSPYGHIV----YDSNPYIY 757
+ N + + + ++ S Y ++ + I+
Sbjct: 542 ERLVNAILDFLPKIEENLICSKYTDLLRIALMAEDEAIF 580
>1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural
genomics, PSI, protein structure initiative; 1.80A
{Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A
Length = 270
Score = 66.5 bits (163), Expect = 3e-12
Identities = 40/298 (13%), Positives = 84/298 (28%), Gaps = 98/298 (32%)
Query: 172 GVARDARLLTPVALTSGPDGSLYVGDFN--LVRRLTPEGNVFTVLQLSATQVSYQYYLAL 229
V L P L G++YV DFN +V N + ++Y LA+
Sbjct: 59 TVLPFNGLYQPQGLAVDGAGTVYVTDFNNRVVTLAAGSNNQTVL---PFDGLNYPEGLAV 115
Query: 230 SPADGHLYISDAEKHQILRVLSLESVADPSINWEVAVGSGERCIPGDETNCGDNGPALAA 289
G +Y++D ++++++ + +
Sbjct: 116 DT-QGAVYVADRGNNRVVKL-------AAGSKTQTVLPFT-------------------- 147
Query: 290 KLSHPKGLAIKADKTMFIADGTN--IRVVSPEGIIHTLIGHHKHHNIWSPFNCHRSFPAS 347
L+ P G+A+ +++ D N + + E ++
Sbjct: 148 GLNDPDGVAVDNSGNVYVTDTDNNRVVKLEAESNNQVVLP-------------------- 187
Query: 348 TAQLQWPTGLALSPLDDSLHFID---DRVIFKLTNDLKVKIVAGIPLHCRTGDKDKRDFK 404
+ P G+A+ +++ + ++V+ KL V
Sbjct: 188 FTDITAPWGIAVDE-AGTVYVTEHNTNQVV-KLLAGSTTSTVLP---------------- 229
Query: 405 DKQSKTKKSTVQDDSVRASNMDLGSLTALAFSPTGDLYIADIDARKVNALRVIDSTGR 462
L + A+A +Y+AD +V + S
Sbjct: 230 -------------------FTGLNTPLAVAVDSDRTVYVADRGNDRV---VKLTSLEH 265
Score = 59.6 bits (145), Expect = 8e-10
Identities = 30/158 (18%), Positives = 60/158 (37%), Gaps = 41/158 (25%)
Query: 179 LLTPVALTSGPDGSLYVGDF--NLVRRLTPEGNVFTVLQLSATQVSYQYYLALSPADGHL 236
L P + G++YV D N V +L E N VL T ++ + +A+ G +
Sbjct: 149 LNDPDGVAVDNSGNVYVTDTDNNRVVKLEAESNNQVVL--PFTDITAPWGIAVDE-AGTV 205
Query: 237 YISDAEKHQILRVLSLESVADPSINWEVAVGSGERCIPGDETNCGDNGPALAAKLSHPKG 296
Y+++ +Q++++ + L+ P
Sbjct: 206 YVTEHNTNQVVKL-------LAGSTTSTVLPFT--------------------GLNTPLA 238
Query: 297 LAIKADKTMFIADGTN--IRVVSPEGIIHTLIGHHKHH 332
+A+ +D+T+++AD N + ++ HH HH
Sbjct: 239 VAVDSDRTVYVADRGNDRVVKLTSL-------EHHHHH 269
Score = 32.2 bits (74), Expect = 0.45
Identities = 17/110 (15%), Positives = 29/110 (26%), Gaps = 22/110 (20%)
Query: 427 LGSLTALAFSPTGDLYIADIDARKVNALRVIDSTGRMFDFAGR----------------W 470
L LA G +Y+ D + R V + + +
Sbjct: 66 LYQPQGLAVDGAGTVYVTDFNNRVV---TLAAGSNNQTVLPFDGLNYPEGLAVDTQGAVY 122
Query: 471 QSDKKNCNTTNCAEFEKNSKETLLTSTARFTSISALSVSPDGVVNVADQG 520
+D+ N + SK + ++V G V V D
Sbjct: 123 VADRGNN---RVVKLAAGSKTQTVLPFTGLNDPDGVAVDNSGNVYVTDTD 169
Score = 28.4 bits (64), Expect = 9.0
Identities = 24/189 (12%), Positives = 56/189 (29%), Gaps = 47/189 (24%)
Query: 587 TITDASGNKINFLRDYSNVAQLQWPTGLALSPLDDSLHFIDD---RVIFKLTNDLKIRAL 643
+ T ASG + ++ + P+G+A+ +++ + + KL
Sbjct: 5 SPTQASGQ---TVLPFTGIDFRLSPSGVAVDS-AGNVYVTSEGMYGRVVKLATG------ 54
Query: 644 KKGRFDVTYDYDHLDR-LSVRKDNYGNI--------TQFFYNNHEYPTQV--THIYSPRY 692
++ L + + D G + T + + P
Sbjct: 55 --STGTTVLPFNGLYQPQGLAVDGAGTVYVTDFNNRVVTLAAGSNNQTVLPFDGLNYPE- 111
Query: 693 GKLISLVYDERGFLIFAQMFRHKYYIATDQCGTPVMVFNQYGETVREI----MRSPYGHI 748
L D +G + A ++ V+ +T + + P G +
Sbjct: 112 ----GLAVDTQGAVYVADRGNNR-----------VVKLAAGSKTQTVLPFTGLNDPDG-V 155
Query: 749 VYDSNPYIY 757
D++ +Y
Sbjct: 156 AVDNSGNVY 164
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 54.7 bits (131), Expect = 1e-07
Identities = 103/627 (16%), Positives = 166/627 (26%), Gaps = 261/627 (41%)
Query: 130 FHEGILQKGDGSSLHLKHEFPRTVSVVMGTGLQRPLVCKDCDGVAR---DARLLTPVALT 186
F L+ D +H ++ + LV + + AR++
Sbjct: 91 FENCYLEGND---IH-------ALAAKLLQENDTTLVKTK--ELIKNYITARIMAKRPFD 138
Query: 187 SGPDGSLYVGDFNLVRRLTPEGNVFTVL--Q---------LSATQVSYQYYLA--LSPAD 233
+ +L F V + + Q L +Y + + +
Sbjct: 139 KKSNSAL----FRAVG--EGNAQLVAIFGGQGNTDDYFEELRDLYQTYHVLVGDLIKFSA 192
Query: 234 GHLY-----ISDAEKH-----QILRVLS----------LES--VADPSI------NWEV- 264
L DAEK IL L L S ++ P I ++ V
Sbjct: 193 ETLSELIRTTLDAEKVFTQGLNILEWLENPSNTPDKDYLLSIPISCPLIGVIQLAHYVVT 252
Query: 265 AVGSGERCIPGDETNCGDNGPALAAKLSHPKGL----AIKADKTM--FIADGTNIRVVSP 318
A G PG+ L H +GL AI + F
Sbjct: 253 AKLLGFT--PGELR------SYLKGATGHSQGLVTAVAIAETDSWESFFVSVRKA----- 299
Query: 319 EGIIHTL--IGHHKHHNIWSPFNCHRSFPASTAQLQWPTGLALSPLDDSLHFIDDRVIFK 376
I L IG C+ ++P T L S L+DS
Sbjct: 300 ---ITVLFFIG----------VRCYEAYP--------NTSLPPSILEDS----------- 327
Query: 377 LTNDLKVKIVAGIP---LHCRTGDKDKRDFKDKQSKTKKSTVQDDSVRASNMDLGSLTAL 433
++ G+P L + +Q VQD V +N L + +
Sbjct: 328 ------LENNEGVPSPMLSI-------SNLTQEQ-------VQDY-VNKTNSHLPAGKQV 366
Query: 434 AFS------------PTGDLYIADIDARKVNALRVIDSTGRMFDFAGRWQSDKKNCNTTN 481
S P LY ++ RK A +D QS
Sbjct: 367 EISLVNGAKNLVVSGPPQSLYGLNLTLRKAKAPSGLD------------QSR-------- 406
Query: 482 CAEFEKNSKETLLTSTARFTSISA------LSVSPDGVVNVADQGSLHILALQHYLPTHD 535
F S+ L S RF +++ L + D + + ++
Sbjct: 407 -IPF---SERKLKFSN-RFLPVASPFHSHLLVPASDLINKDLVKNNVSF----------- 450
Query: 536 EHGEFKIPYPATNEIYVFNRYGQHITTRDMTSGKPRYSFLYSKNTSFGKLSTITDASGNK 595
+ +IP V++ T D G S + SG+
Sbjct: 451 NAKDIQIP--------VYD-------TFD---G-----------------SDLRVLSGSI 475
Query: 596 INFLRDYSNVAQLQWPTGLALSPLDDSLHFIDDRVIF---------KLTNDLK----IRA 642
+ D ++W T H +D F LT+ K +R
Sbjct: 476 SERIVDCIIRLPVKWETTTQFKA----THILD----FGPGGASGLGVLTHRNKDGTGVRV 527
Query: 643 LKKGRFDVTYDYDHLDRLSVRKDNYGN 669
+ G D+ D D+YG
Sbjct: 528 IVAGTLDINPD-----------DDYGF 543
Score = 52.0 bits (124), Expect = 7e-07
Identities = 76/415 (18%), Positives = 124/415 (29%), Gaps = 165/415 (39%)
Query: 8 DLHLTYRSSLSSGYLSSILIHLTHNEIPASLVKVHVRVEIEGSVHTKTYEADPNLTHVFT 67
DL+ TY + LI + + + L++ + E V T+ ++
Sbjct: 175 DLYQTYHVLVGD------LIKFSAETL-SELIRTTLDAE---KVFTQGL-------NILE 217
Query: 68 W-NKRNVYKQKVY-----------GVAQ-------CKISIGYEHESCSSIVWETQTCTLQ 108
W + K Y GV Q K+ G+ S + + T
Sbjct: 218 WLENPSNTPDKDYLLSIPISCPLIGVIQLAHYVVTAKLL-GFTPGELRSYL---KGATGH 273
Query: 109 GFDV----DISDIGGWSLDVHHHYNFHEGILQKGDGSSLHL-------KHE-FPRTV--- 153
+ I++ W +F + + ++ + +E +P T
Sbjct: 274 SQGLVTAVAIAETDSWE-------SFFVSVRK-----AITVLFFIGVRCYEAYPNTSLPP 321
Query: 154 -----SVVMGTGLQRP-LVCKDC------DGVARDARLLTP-----VALT--------SG 188
S+ G+ P L + D V + L ++L SG
Sbjct: 322 SILEDSLENNEGVPSPMLSISNLTQEQVQDYVNKTNSHLPAGKQVEISLVNGAKNLVVSG 381
Query: 189 PDGSLYVGDFNL-VRRLT-PEGN------------VFTV--LQLSA---TQVSYQYYLAL 229
P SLY NL +R+ P G F+ L +++ + L
Sbjct: 382 PPQSLYG--LNLTLRKAKAPSGLDQSRIPFSERKLKFSNRFLPVASPFHS--HL-----L 432
Query: 230 SPADGHLYISDAEKHQI-------------------LRVLS---LESVAD-----PSINW 262
PA L D K+ + LRVLS E + D P + W
Sbjct: 433 VPAS-DLINKDLVKNNVSFNAKDIQIPVYDTFDGSDLRVLSGSISERIVDCIIRLP-VKW 490
Query: 263 EVAVGSGERCIPGDETNCGDNGPALAAKLSHPKGLAIKADKTMFIADGTNIRVVS 317
E T+ D GP A+ L L T DGT +RV+
Sbjct: 491 ETTTQF-------KATHILDFGPGGASGLG---VL------THRNKDGTGVRVIV 529
Score = 38.5 bits (89), Expect = 0.011
Identities = 41/204 (20%), Positives = 65/204 (31%), Gaps = 79/204 (38%)
Query: 123 DVH--HHYNFHEGILQKGDGSSLHLKHEFPRTVSVVM-GTGLQR------PLVCKDC-DG 172
D H Y F S L + P +++ G +R ++ + DG
Sbjct: 1650 DNHFKDTYGF----------SILDIVINNPVNLTIHFGGEKGKRIRENYSAMIFETIVDG 1699
Query: 173 VARDARLLTPV--ALTS----GPDGSLYVGDFNLVRRLTPEGNVFTVLQ--LSATQVSYQ 224
+ ++ + TS G L T FT Q L+ +
Sbjct: 1700 KLKTEKIFKEINEHSTSYTFRSEKGLLS---------AT----QFT--QPALTL--MEKA 1742
Query: 225 YYLAL-----SPAD----GH-L--Y---ISDAEKHQILRVLSLESVADPSINWEVAV--- 266
+ L PAD GH L Y S A+ V+S+ES+ + V
Sbjct: 1743 AFEDLKSKGLIPADATFAGHSLGEYAALASLAD------VMSIESLVE-------VVFYR 1789
Query: 267 GS-GERCIPGDETNCGDNGPALAA 289
G + +P DE G + + A
Sbjct: 1790 GMTMQVAVPRDEL--GRSNYGMIA 1811
Score = 35.0 bits (80), Expect = 0.12
Identities = 21/85 (24%), Positives = 28/85 (32%), Gaps = 16/85 (18%)
Query: 664 KDNYG-NITQFFYNNHEYPTQVTHIYSPRYGKLISLVYDERGFLIFAQMFRHKYYIATDQ 722
KD YG +I NN P +T + GK I Y +IF + D
Sbjct: 1654 KDTYGFSILDIVINN---PVNLTIHFGGEKGKRIRENYSA---MIFETI--------VDG 1699
Query: 723 CGTPVMVFNQYGETVREIM-RSPYG 746
+F + E RS G
Sbjct: 1700 KLKTEKIFKEINEHSTSYTFRSEKG 1724
>3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller,
lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of
basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A*
Length = 329
Score = 53.3 bits (128), Expect = 1e-07
Identities = 56/382 (14%), Positives = 101/382 (26%), Gaps = 113/382 (29%)
Query: 169 DCDGVARDARLLTPVALTSGPDGSLYVGDF--NLVRRLTPEGNVFTVLQLSATQVSYQYY 226
+ D + +L + ++ + + F Q +
Sbjct: 13 ELDWPGVYLLPGQVSGVALDSKNNLVIFHRGDHVWDGNSFDSK-FVYQQRGLGPIEEDTI 71
Query: 227 LALSP-----------------------ADGHLYISDAEKHQILRVLSLESVADPSINWE 263
L + P DG+ +++D HQ+ ++ DP
Sbjct: 72 LVIDPNNAEILQSSGKNLFYLPHGLSIDTDGNYWVTDVALHQVFKL-------DPHSKEG 124
Query: 264 VAVGSGERCIPGDETNCGDNGPALAAKLSHPKGLAI-KADKTMFIADGTN---IRVVSPE 319
+ G PG + N P +A+ + +F++DG I SP
Sbjct: 125 PLLILGRSMQPGSDQN----------HFCQPTDVAVEPSTGAVFVSDGYCNSRIVQFSPS 174
Query: 320 GIIHTLIGHHKHHNIWSPFNCHRSFPASTAQLQWPTGLALSPLDDSLHFIDDRVIFKLTN 379
G T G + P Q P LAL P D L + DR N
Sbjct: 175 GKFVTQWGEESSGSSPRP-----------GQFSVPHSLALVPHLDQL-CVADR-----EN 217
Query: 380 DLKVKIVAGIPLHCRTGDKDKRDFKDKQSKTKKSTVQDDSVRASNMDLGSLTALAFSPTG 439
+++ +K ++ S + + + F+ G
Sbjct: 218 G-RIQCF------------------KTDTKEFVREIKHASFGRNVFAISYIPGFLFAVNG 258
Query: 440 DLYIADIDARKVNALRVID-STGRMFDFAGRWQSDKKNCNTTNCAEFEKNSKETLLTSTA 498
Y D + + V++ S+G + D
Sbjct: 259 KPYFGDQEPVQG---FVMNFSSGEIIDVFK--------------------------PVRK 289
Query: 499 RFTSISALSVSPDGVVNVADQG 520
F + S DG V + D
Sbjct: 290 HFDMPHDIVASEDGTVYIGDAH 311
Score = 51.7 bits (124), Expect = 4e-07
Identities = 45/302 (14%), Positives = 81/302 (26%), Gaps = 78/302 (25%)
Query: 176 DARLLTPVALTSGPDGSLYVGDFNL--VRRLTPEGNVFTVLQLSATQVSYQ--------Y 225
P L+ DG+ +V D L V +L P +L L +
Sbjct: 87 KNLFYLPHGLSIDTDGNYWVTDVALHQVFKLDPHSKEGPLLILGRSMQPGSDQNHFCQPT 146
Query: 226 YLALSPADGHLYISDAEK-HQILRVLSLESVADPSINWEVAVGSGERCIPGDETNCGDNG 284
+A+ P+ G +++SD +I++ PS + G
Sbjct: 147 DVAVEPSTGAVFVSDGYCNSRIVQF-------SPSGKFVTQWGEE-----------SSGS 188
Query: 285 PALAAKLSHPKGLAIKADK-TMFIADGTN--IRVVSPEGIIHTLIGHHKHHNIWSPFNCH 341
+ S P LA+ + +AD N I+ + + H
Sbjct: 189 SPRPGQFSVPHSLALVPHLDQLCVADRENGRIQCFKTDT------------KEFVREIKH 236
Query: 342 RSFPASTAQLQWPTGLALSPLDDSLHFIDDRVIFKLTNDLKVKIVAGIPLHCRTGDKDKR 401
SF + + + G + + +F D +
Sbjct: 237 ASFGRNVFAISYIPGFLFAV-NGKPYFGDQE------PVQGFVM---------------- 273
Query: 402 DFKDKQSKTKKSTVQDDSVRASNMDLGSLTALAFSPTGDLYIADIDARKVNALRVIDSTG 461
+F + V+ + S G +YI D V T
Sbjct: 274 NFSSGEIIDVFKPVRK--------HFDMPHDIVASEDGTVYIGDAHTNTV---WKFTLTE 322
Query: 462 RM 463
+M
Sbjct: 323 KM 324
Score = 41.7 bits (98), Expect = 7e-04
Identities = 31/207 (14%), Positives = 59/207 (28%), Gaps = 49/207 (23%)
Query: 190 DGSLYVGDF---NLVRRLTPEGNVFTV-------LQLSATQVSYQYYLALSPADGHLYIS 239
G+++V D + + + +P G T Q S + LAL P L ++
Sbjct: 154 TGAVFVSDGYCNSRIVQFSPSGKFVTQWGEESSGSSPRPGQFSVPHSLALVPHLDQLCVA 213
Query: 240 DAEKHQILRVLSLESVADPSINWEVAVGSGERCIPGDETNCGDNGPALAAKLSHPKGLAI 299
D E +I + ++ R I +S+ G
Sbjct: 214 DRENGRI-QCFKTDT------------KEFVREIKHASFGRNVFA------ISYIPGFLF 254
Query: 300 KADKTMFIADGTNIRVVSPEGIIHTLIGHHKHHNIWSPFNCHRSFPASTAQLQWPTGLAL 359
+ + D ++ +I F P +
Sbjct: 255 AVNGKPYFGDQEPVQGFVMNFSSGEIID---------------VFKPVRKHFDMPHDIVA 299
Query: 360 SPLDDSLHFID---DRV-IFKLTNDLK 382
S D +++ D + V F LT ++
Sbjct: 300 SE-DGTVYIGDAHTNTVWKFTLTEKME 325
Score = 40.6 bits (95), Expect = 0.002
Identities = 51/364 (14%), Positives = 103/364 (28%), Gaps = 84/364 (23%)
Query: 329 HKHHNIWSPFNCHRSFPASTAQLQWPTGLALSPLDDSLHFID--DRVIFKLTNDLKVKIV 386
H HH+ +P +G+AL ++L D V + D K
Sbjct: 1 HHHHHHDFHVEEELDWPGVYLLPGQVSGVALDS-KNNLVIFHRGDHVWDGNSFDSKFVYQ 59
Query: 387 AGIPLHCRTGDKDKRDFKDKQSKTKKSTVQDDSVRASNMDLGSLTALAFSPTGDLYIADI 446
D + + L+ G+ ++ D+
Sbjct: 60 QRGLGPIEEDTILVIDPNNAEILQSSGKNL----------FYLPHGLSIDTDGNYWVTDV 109
Query: 447 DARKVNALRVIDSTGRMFDFAGRWQSDKKNCNTTNCAEFEKNSKETLLTSTARFTSISAL 506
+V +D + +S + + F + +
Sbjct: 110 ALHQV---FKLDPHSKEGPLLILGRSMQPG------------------SDQNHFCQPTDV 148
Query: 507 SVSPD-GVVNVAD------------QGSLHILALQHYLPTHDEHGEFKIPY-----PATN 548
+V P G V V+D G + + G+F +P+ P +
Sbjct: 149 AVEPSTGAVFVSDGYCNSRIVQFSPSGKFVTQWGEESSGSSPRPGQFSVPHSLALVPHLD 208
Query: 549 EIYVFNRYGQHI------------TTRDMTSGKPRYSFLYSKNTSF---GKLSTITDASG 593
++ V +R I + + G+ ++ Y F GK D
Sbjct: 209 QLCVADRENGRIQCFKTDTKEFVREIKHASFGRNVFAISYIPGFLFAVNGKP-YFGDQEP 267
Query: 594 NKINFLRDYSNVA----------QLQWPTGLALSPLDDSLHFID---DRV-IFKLTNDLK 639
+ F+ ++S+ P + S D +++ D + V F LT ++
Sbjct: 268 VQG-FVMNFSSGEIIDVFKPVRKHFDMPHDIVASE-DGTVYIGDAHTNTVWKFTLTEKME 325
Query: 640 IRAL 643
R++
Sbjct: 326 HRSV 329
Score = 30.2 bits (68), Expect = 2.7
Identities = 9/39 (23%), Positives = 16/39 (41%), Gaps = 2/39 (5%)
Query: 176 DARLLTPVALTSGPDGSLYVGDF--NLVRRLTPEGNVFT 212
P + + DG++Y+GD N V + T +
Sbjct: 288 RKHFDMPHDIVASEDGTVYIGDAHTNTVWKFTLTEKMEH 326
>2p4o_A Hypothetical protein; putative lactonase, structural genomics,
joint center for ST genomics, JCSG, protein structure
initiative, PSI-2; HET: MSE; 1.90A {Nostoc punctiforme}
SCOP: b.68.6.3
Length = 306
Score = 45.3 bits (107), Expect = 4e-05
Identities = 21/179 (11%), Positives = 49/179 (27%), Gaps = 36/179 (20%)
Query: 182 PVALTSGPDGSLYVGDFN-----LVRRLTPEGNVFTVLQLSATQVSYQYYLALSPADGHL 236
L +G L +N +V + +G V T+L L + + D
Sbjct: 74 VSGLAFTSNGDLVATGWNADSIPVVSLVKSDGTVETLLTLPDA--IFLNGITPLS-DTQY 130
Query: 237 YISDAEKHQILR----------VLSLESVADPSINWEVAVGSGERCIPGD--ETNCGDN- 283
+D+ + I L +A + +G + +N
Sbjct: 131 LTADSYRGAIWLIDVVQPSGSIWLEHPMLARSNSESVFPAANGLKRFGNFLYVSNTEKML 190
Query: 284 -------------GPALAAKLSHPKGLAIKADKTMFIADGTN--IRVVSPEGIIHTLIG 327
P + + ++ A + ++ A + ++P+ +
Sbjct: 191 LLRIPVDSTDKPGEPEIFVEQTNIDDFAFDVEGNLYGATHIYNSVVRIAPDRSTTIIAQ 249
Score = 45.3 bits (107), Expect = 4e-05
Identities = 46/337 (13%), Positives = 97/337 (28%), Gaps = 82/337 (24%)
Query: 185 LTSGPDGSLYVGDFNL--VRRLTPEGNVFTVLQLSATQVSYQYYLALSPADGHLYISDAE 242
L S PDG+++V + + + +TP+GN + LA + +G L +
Sbjct: 37 LASAPDGTIFVTNHEVGEIVSITPDGNQQIHATVEGKVSG----LAFTS-NGDLVATGWN 91
Query: 243 KHQILRVLSLESVADPSINWEVAVGSGERCIPGDETNCGDNGPALAAKLSHPKGLAIKAD 302
I V ++ +D ++ + + G+ +D
Sbjct: 92 ADSIPVVSLVK--SDGTVETLLTLPDAIF----------------------LNGITPLSD 127
Query: 303 KTMFIADGTNIRVVSPEGIIHTLIGHHKHHNIWSPFNCHRSFPASTAQLQWPTGLALSPL 362
AD I + +IW L ++ P
Sbjct: 128 TQYLTADSYRGA-------IWLIDVVQPSGSIW----------LEHPMLARSNSESVFPA 170
Query: 363 DDSLHFIDDRVIFKLTNDLKVKIVAGIPLHCRTGDKDKRDFKDKQSKTKKSTVQDDSVRA 422
+ L + + ++ + ++ IP+ + F
Sbjct: 171 ANGLKRFGNFLYV---SNTEKMLLLRIPVDSTDKPGEPEIF------------------- 208
Query: 423 SNMDLGSLTALAFSPTGDLYIADIDARKVNALRVIDSTGRMFDFAGRWQSDKKNCNTTNC 482
++ ++ AF G+LY A N++ I A +++ +T
Sbjct: 209 --VEQTNIDDFAFDVEGNLYGATHIY---NSVVRIAPDRSTTIIAQ---AEQGVIGSTAV 260
Query: 483 AEF--EKNSKETL-LTSTARFTSISALSVSPDGVVNV 516
A F + + + + V P VV +
Sbjct: 261 A-FGQTEGDCTAIYVVTNGGMFLPPPTGVVPANVVRL 296
Score = 32.6 bits (74), Expect = 0.42
Identities = 9/57 (15%), Positives = 17/57 (29%), Gaps = 6/57 (10%)
Query: 169 DCDGVARDARLLT----PVALTSGPDGSLYVGDF--NLVRRLTPEGNVFTVLQLSAT 219
D + + +G+LY N V R+ P+ + + Q
Sbjct: 197 DSTDKPGEPEIFVEQTNIDDFAFDVEGNLYGATHIYNSVVRIAPDRSTTIIAQAEQG 253
>4a0p_A LRP6, LRP-6, low-density lipoprotein receptor-related protein;
signaling, WNT signalling, WNT3A, DKK1, MESD; HET: NAG;
1.90A {Homo sapiens} PDB: 3s2k_A* 3s8z_A* 3s8v_A*
Length = 628
Score = 38.6 bits (89), Expect = 0.008
Identities = 36/188 (19%), Positives = 57/188 (30%), Gaps = 51/188 (27%)
Query: 186 TSGPDGSLYVGDFNLVRRLTPEGNVFTVLQLSATQVSYQYYLALSPADGHLYISDAEKHQ 245
T P+ L +RR++ E N V + T V L D +Y +D
Sbjct: 2 TGVPEAFLLFSRRADIRRISLETNNNNVA-IPLTGVKEASALDFDVTDNRIYWTDISLKT 60
Query: 246 ILRVLSLESVADPSINWEVAVGSGERCIPGDETNCGDNGPALAAKLSHPKGLAI-KADKT 304
I R S E V G L +P+G+A+ K
Sbjct: 61 ISRAFMNGS------ALEHVVEFG---------------------LDYPEGMAVDWLGKN 93
Query: 305 MFIADGTN--IRVVSPEGIIHTLIGHHKHHNIWSPFNCHRSFPASTAQLQWPTGLALSPL 362
++ AD I V +G ++ L P LAL P
Sbjct: 94 LYWADTGTNRIEVSKLDGQHRQVLVWK--------------------DLDSPRALALDPA 133
Query: 363 DDSLHFID 370
+ +++ +
Sbjct: 134 EGFMYWTE 141
Score = 34.0 bits (77), Expect = 0.18
Identities = 17/180 (9%), Positives = 44/180 (24%), Gaps = 44/180 (24%)
Query: 194 YVGDFNLVRRLTPEGNVFTVLQLSATQVSYQYYLALSPADGHLYISDAEKHQILRVLSLE 253
+ + R+ + + L + + P D LY D+ ++ I +
Sbjct: 312 LFSQKSAINRMVIDEQQSPDIILPIHSLRNVRAIDYDPLDKQLYWIDSRQNMIRKA---- 367
Query: 254 SVADPSINWEVAVGSGERCIPGDETNCGDNGPALAAKLSHPKGLAI-KADKTMFIADGTN 312
+ + P L+I + ++
Sbjct: 368 -----QEDG------------SQGFTVVVSSVPSQNLEIQPYDLSIDIYSRYIYWTCEAT 410
Query: 313 --IRVVSPEGIIHTLIGHHKHHNIWSPFNCHRSFPASTAQLQWPTGLALSPLDDSLHFID 370
I V +G ++ + P + ++P ++F +
Sbjct: 411 NVINVTRLDGRSVGVVLKG--------------------EQDRPRAVVVNPEKGYMYFTN 450
Score = 33.2 bits (75), Expect = 0.33
Identities = 30/200 (15%), Positives = 58/200 (29%), Gaps = 36/200 (18%)
Query: 181 TPVALTSGP-DGSLYVGDFNL--VRRLTPEGNVFTVLQLSATQVSYQYYLALSPADGHLY 237
AL D +Y D +L + R G+ + + Y +A+ +LY
Sbjct: 38 EASALDFDVTDNRIYWTDISLKTISRAFMNGSALEHV--VEFGLDYPEGMAVDWLGKNLY 95
Query: 238 ISDAEKHQILRVLSLES-----------------VADPSINWEVAVGSGERCIPGDETNC 280
+D ++I V L+ DP+ + G +
Sbjct: 96 WADTGTNRI-EVSKLDGQHRQVLVWKDLDSPRALALDPAEGFMYWTEWGGKPKIDRAAMD 154
Query: 281 GDNGPALAAKLSHPKGLAIKADKTMFIA-------------DGTNIRVVSPEGIIHTLIG 327
G L + GL I K G N V++ + +
Sbjct: 155 GSERTTLVPNVGRANGLTIDYAKRRLYWTDLDTNLIESSNMLGLNREVIADDLPHPFGLT 214
Query: 328 HHKHHNIWSPFNCHRSFPAS 347
++ + W+ ++ A+
Sbjct: 215 QYQDYIYWTDWSRRSIERAN 234
>1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat,
beta-propeller, translation; 1.95A {Drosophila
melanogaster} SCOP: b.68.9.1
Length = 286
Score = 37.6 bits (88), Expect = 0.012
Identities = 29/200 (14%), Positives = 64/200 (32%), Gaps = 56/200 (28%)
Query: 172 GVARDARLLTP--VALTSGPDGSLYVGDF---NLVRRLTPEGNVFTVLQLSATQVSYQYY 226
RD++LL P VA+ G + V + + ++ G V + AT + +
Sbjct: 69 CGKRDSQLLYPNRVAVV-RNSGDIIVTERSPTHQIQIYNQYGQF--VRKFGATILQHPRG 125
Query: 227 LALSPADGHLYISDAEKHQILRVLSLESVADPSINWEVAVGSGERCIPGDETNCGDNGPA 286
+ + G + + + + ++ + G+ G +
Sbjct: 126 VTVDN-KGRIIVVECKVMRV-IIFDQN-------------GNVLHKF-------GCSK-- 161
Query: 287 LAAKLSHPKGLAIKADKTMFIADGTN--IRVVSPEGIIHTLIGHHKHHNIWSPFNCHRSF 344
L P G+ + + +FI+D ++V + EG IG
Sbjct: 162 ---HLEFPNGVVVNDKQEIFISDNRAHCVKVFNYEGQYLRQIG----------------- 201
Query: 345 PASTAQLQWPTGLALSPLDD 364
+P G+ ++ +
Sbjct: 202 --GEGITNYPIGVGINSNGE 219
Score = 37.2 bits (87), Expect = 0.014
Identities = 20/165 (12%), Positives = 47/165 (28%), Gaps = 33/165 (20%)
Query: 176 DARLLTPVALTSGPDGSLYVGDFNL--VRRLTPEGNV---FTVLQLSATQVSYQYYLALS 230
+ + P + + V D N ++ EG F +Q+ Y +A+
Sbjct: 26 EGQFTEPSGVAVNAQNDIIVADTNNHRIQIFDKEGRFKFQFGECGKRDSQLLYPNRVAVV 85
Query: 231 PADGHLYISDAEKHQILRVLSLESVADPSINWEVAVGSGERCIPGDETNCGDNGPALAAK 290
G + +++ +++ + G
Sbjct: 86 RNSGDIIVTERSPTHQIQIYNQY---------------------GQFVRKFGAT-----I 119
Query: 291 LSHPKGLAIKADKTMFIADGTN--IRVVSPEGIIHTLIGHHKHHN 333
L HP+G+ + + + + + + G + G KH
Sbjct: 120 LQHPRGVTVDNKGRIIVVECKVMRVIIFDQNGNVLHKFGCSKHLE 164
Score = 36.8 bits (86), Expect = 0.018
Identities = 37/363 (10%), Positives = 84/363 (23%), Gaps = 144/363 (39%)
Query: 290 KLSHPKGLAIKADKTMFIADGTN--IRVVSPEGIIHTLIGHHKHHNIWSPFNCHRSFPAS 347
+ + P G+A+ A + +AD N I++ EG G
Sbjct: 28 QFTEPSGVAVNAQNDIIVADTNNHRIQIFDKEGRFKFQFG---------------ECGKR 72
Query: 348 TAQLQWPTGLALSPLDDSLHFIDD---RVIFKLTNDLKVKIVAGIPLHCRTGDKDKRDFK 404
+QL +P +A+ + + I G + R F
Sbjct: 73 DSQLLYPNRVAVVRNSGDIIVTERSPTHQIQIYNQY-------GQFV---------RKFG 116
Query: 405 DKQSKTKKSTVQDDSVRASNMDLGSLTALAFSPTGDLYIADIDARKVNALRVIDSTGRMF 464
L + G + + + +V + D G
Sbjct: 117 ATI-------------------LQHPRGVTVDNKGRIIVVECKVMRV---IIFDQNG--- 151
Query: 465 DFAGRWQSDKKNCNTTNCAEFEKNSKETLLTSTARFTSISALSVSPDGVVNVADQGSLHI 524
+ ++ K + + V+ + ++D +
Sbjct: 152 NVLHKFGCSK------------------------HLEFPNGVVVNDKQEIFISDNRA--- 184
Query: 525 LALQHYLPTHDEHGEFKIPYPATNEIYVFNRYGQHITTRDMTSGKPRYSFLYSKNTSFGK 584
+ + VFN GQ++
Sbjct: 185 -----------------------HCVKVFNYEGQYLRQ-------------IGGEGITNY 208
Query: 585 LSTI-TDASGNKI-----------------NFLRDYSNVAQLQWPTGLALSPLDDSLHFI 626
+ +++G + + + + +AL D S+ +
Sbjct: 209 PIGVGINSNGEILIADNHNNFNLTIFTQDGQLISALESKVKHAQCFDVALMD-DGSV-VL 266
Query: 627 DDR 629
+
Sbjct: 267 ASK 269
Score = 35.2 bits (82), Expect = 0.067
Identities = 32/196 (16%), Positives = 63/196 (32%), Gaps = 54/196 (27%)
Query: 182 PVALTSGPDGSLYVGDF--NLVRRLTPEGNVFTVLQLSATQVSYQYYLALSPADGHLYIS 239
P +T G + V + V GNV + + + + ++ ++IS
Sbjct: 123 PRGVTVDNKGRIIVVECKVMRVIIFDQNGNVLHKFG-CSKHLEFPNGVVVND-KQEIFIS 180
Query: 240 DAEKHQILRVLSLESVADPSINWEVAVGSGERCIPGDETNCGDNGPALAAKLSHPKGLAI 299
D H + +V + E G+ G G ++P G+ I
Sbjct: 181 DNRAHCV-KVFNYE---------------GQY-----LRQIGGEG-----ITNYPIGVGI 214
Query: 300 KADKTMFIADGTN---IRVVSPEGIIHTLIGHHKHHNIWSPFNCHRSFPASTAQLQWPTG 356
++ + IAD N + + + +G LI + S +
Sbjct: 215 NSNGEILIADNHNNFNLTIFTQDG---QLI---------------SAL-ESKVKHAQCFD 255
Query: 357 LALSPLDDSLHFIDDR 372
+AL D S+ + +
Sbjct: 256 VALMD-DGSV-VLASK 269
Score = 29.8 bits (68), Expect = 3.1
Identities = 18/155 (11%), Positives = 49/155 (31%), Gaps = 37/155 (23%)
Query: 176 DARLLTPVALTSGPDGSLYVGDF--NLVRRLTPEGN-VFTVLQLSATQVSYQYYLALSPA 232
L P + +++ D + V+ EG + + +Y + ++
Sbjct: 160 SKHLEFPNGVVVNDKQEIFISDNRAHCVKVFNYEGQYLRQI--GGEGITNYPIGVGINS- 216
Query: 233 DGHLYISDAEKHQILRVLSLESVADPSINWEVAVGSGERCIPGDETNCGDNGPALAAKLS 292
+G + I+D + L + + + G + K +
Sbjct: 217 NGEILIADNHNNFNLTIFTQD-------------GQLISALESK------------VKHA 251
Query: 293 HPKGLAIKADKTMFIADGTN-IRV-----VSPEGI 321
+A+ D ++ +A + + ++P G+
Sbjct: 252 QCFDVALMDDGSVVLASKDYRLYIYRYVQLAPVGM 286
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna; HET:
CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 35.7 bits (81), Expect = 0.017
Identities = 14/65 (21%), Positives = 21/65 (32%), Gaps = 37/65 (56%)
Query: 242 EKHQILRVLSLESVADPSIN-WEVAVGSGERCIPGDETNCGDNGPALAAKLSHPKGLAIK 300
EK + + L++ S+ + D+ PAL AIK
Sbjct: 18 EKQALKK---LQA----SLKLYA----------D-------DSAPAL----------AIK 43
Query: 301 ADKTM 305
A TM
Sbjct: 44 A--TM 46
>2dg1_A DRP35, lactonase; beta propeller, hydrolase; 1.72A {Staphylococcus
aureus} SCOP: b.68.6.1 PDB: 2dg0_A 2dso_A
Length = 333
Score = 34.7 bits (80), Expect = 0.10
Identities = 22/150 (14%), Positives = 43/150 (28%), Gaps = 35/150 (23%)
Query: 189 PDGSLYVGDFNLVR--------RLTPEGNVFTVLQLSATQVSYQYYLALSPADGHLYISD 240
G Y DF ++P+ T + +S +ALS + L++++
Sbjct: 144 SKGGFYFTDFRGYSTNPLGGVYYVSPDFRTVTPI---IQNISVANGIALSTDEKVLWVTE 200
Query: 241 AEKHQILRVLSLESVADPSINWEVAVGSGERCIPGDETNCGDNGPALAAKLSHPKGLAIK 300
+++ R + G G P I
Sbjct: 201 TTANRLHR-------------IALEDDGVTIQPFGATIPYYFTGHE------GPDSCCID 241
Query: 301 ADKTMFIA--DGTNIRVVSPEGIIHTLIGH 328
+D +++A + V + G IG
Sbjct: 242 SDDNLYVAMYGQGRVLVFNKRG---YPIGQ 268
>3sov_A LRP-6, low-density lipoprotein receptor-related protein; beta
propeller, protein binding-antagonist complex; HET: NAG
FUC; 1.27A {Homo sapiens} PDB: 3soq_A* 3sob_B
Length = 318
Score = 33.9 bits (77), Expect = 0.19
Identities = 31/211 (14%), Positives = 61/211 (28%), Gaps = 54/211 (25%)
Query: 187 SGPDGSLYVGDFNLVRRLTPEGNVFTVLQLSATQVSYQYYLALSPADGHLYISDAEKHQI 246
+G L + +R + + + + + G +Y SD + I
Sbjct: 1 AGSAPLLLYANRRDLRLVDATNGKENA-TIVVGGLEDAAAVDFVFSHGLIYWSDVSEEAI 59
Query: 247 LRVLSLESVADPSINWEVAVGSGERCIPGDETNCGDNGPALAAKLSHPKGLAI------- 299
R + + + + V SG L P GLA
Sbjct: 60 KRTE-----FNKTESVQNVVVSG---------------------LLSPDGLACDWLGEKL 93
Query: 300 ----KADKTMFIA--DGTNIRVV------SPEGI-IHTLIGHHKHHNIWSPFNCHRSFPA 346
+ ++ DG+ +V+ P I + G + R+
Sbjct: 94 YWTDSETNRIEVSNLDGSLRKVLFWQELDQPRAIALDPSSGFMYWTDWGEVPKIERAGMD 153
Query: 347 ST-------AQLQWPTGLALSPLDDSLHFID 370
+ +++ WP GL L + L++ D
Sbjct: 154 GSSRFIIINSEIYWPNGLTLDYEEQKLYWAD 184
>1npe_A Nidogen, entactin; glycoprotein, basement membrane, beta-propeller,
EGF-like, structural protein; 2.30A {Mus musculus} SCOP:
b.68.5.1
Length = 267
Score = 32.9 bits (75), Expect = 0.33
Identities = 36/209 (17%), Positives = 55/209 (26%), Gaps = 58/209 (27%)
Query: 193 LYVGDFNLVRRLTPEGNVFTVL---QLSATQVSYQYYLALSPADGHLYISDAEKHQILRV 249
L + RL E N LA D +Y +D + I R
Sbjct: 4 LLFAQTGKIERLPLERNTMKKTEAKAFLHIPAKVIIGLAFDCVDKVVYWTDISEPSIGRA 63
Query: 250 LSLESVADPSINWEVAVGSGERCIPGDETNCGDNGPALAAKLSHPKGLAI---------- 299
S++ G I + L P+G+A+
Sbjct: 64 ---------SLH-----GGEPTTIIRQD-------------LGSPEGIALDHLGRTIFWT 96
Query: 300 -KADKTMFIA--DGTNIRVV------SPEGIIH---------TLIGHHKHHNIWSPFNCH 341
+ +A DGT RV+ +P GI+ T S +
Sbjct: 97 DSQLDRIEVAKMDGTQRRVLFDTGLVNPRGIVTDPVRGNLYWTDWNRDNPKIETSHMDGT 156
Query: 342 RSFPASTAQLQWPTGLALSPLDDSLHFID 370
+ L P GL L ++D
Sbjct: 157 NRRILAQDNLGLPNGLTFDAFSSQLCWVD 185
Score = 31.3 bits (71), Expect = 0.91
Identities = 23/180 (12%), Positives = 47/180 (26%), Gaps = 34/180 (18%)
Query: 181 TPVALT-SGPDGSLYVGDFNL--VRRLTPEGNVFTVLQLSATQVSYQYYLALSPADGHLY 237
+ L D +Y D + + R + G T + + +AL ++
Sbjct: 37 VIIGLAFDCVDKVVYWTDISEPSIGRASLHGGEPTTII--RQDLGSPEGIALDHLGRTIF 94
Query: 238 ISDAEKHQI---------LRVLSLESVADPS-------------INWEVAVGSGERCIPG 275
+D++ +I RVL + +P +W E
Sbjct: 95 WTDSQLDRIEVAKMDGTQRRVLFDTGLVNPRGIVTDPVRGNLYWTDWNRDNPKIETS--- 151
Query: 276 DETNCGDNGPALAAKLSHPKGLAI-KADKTMFIADGTN--IRVVSPEGIIHTLIGHHKHH 332
+ + L P GL + D ++P + +
Sbjct: 152 -HMDGTNRRILAQDNLGLPNGLTFDAFSSQLCWVDAGTHRAECLNPAQPGRRKVLEGLQY 210
>2qe8_A Uncharacterized protein; structural genomics, joint center for
structural genomics, J protein structure initiative,
PSI-2; HET: MSE UNL PG4; 1.35A {Anabaena variabilis atcc
29413}
Length = 343
Score = 32.8 bits (74), Expect = 0.37
Identities = 14/78 (17%), Positives = 32/78 (41%), Gaps = 4/78 (5%)
Query: 171 DGVARDARLLTPVALTSGPDGSLYVGDF--NLVRRLTPEGNVFTVLQLSATQVSYQYYLA 228
+ R + ++ D ++YVGD + + +T + +L ++ ++S+
Sbjct: 239 SKIERYSEKPICDGISIDKDHNIYVGDLAHSAIGVITSADRAYKLL-VTDEKLSWTDSFN 297
Query: 229 LSPADGHLYISDAEKHQI 246
DG+LY + H
Sbjct: 298 FGS-DGYLYFDCNQLHHS 314
Score = 28.6 bits (63), Expect = 8.1
Identities = 21/184 (11%), Positives = 51/184 (27%), Gaps = 42/184 (22%)
Query: 189 PDGSLYVGDFNLVRRLTPEGNVFTVLQLSATQVSYQYYLALSPADGHLYISDAEKHQILR 248
P+ V D V+ P+G V + L + LY+S + R
Sbjct: 169 PEDIDLVIDGVPVQIGQPDGTVIRPHL-------GVNGIVLDAENEWLYLSPMHSTSMYR 221
Query: 249 VLSLESVADPSINWEVAVGSGERCIPGDETNCGDNGPALAAKLSHPKGLAIKADKTMFIA 308
+ +++ + + ++ G++I D +++
Sbjct: 222 I-KSADLSNLQLTDAEL----------------GSKIERYSEKPICDGISIDKDHNIYVG 264
Query: 309 DGTNIRVVSPEGIIHTLIGHHKHHNIWSPFNCHRSFPASTAQLQWPTGLALSPLDDSLHF 368
D + + + + + + +L W D L+F
Sbjct: 265 DLAHSAIG-----------------VITSADRAYKLLVTDEKLSWTDSFNFGS-DGYLYF 306
Query: 369 IDDR 372
++
Sbjct: 307 DCNQ 310
>1ijq_A LDL receptor, low-density lipoprotein receptor; beta-propeller,
lipid transport; 1.50A {Homo sapiens} SCOP: b.68.5.1
g.3.11.1
Length = 316
Score = 32.7 bits (74), Expect = 0.43
Identities = 33/209 (15%), Positives = 63/209 (30%), Gaps = 53/209 (25%)
Query: 191 GSLYVGDFNLVRRLTPEGNVFTVLQLSATQVSYQYYLALSPADGHLYISDAEKHQILRVL 250
L+ + + VR++T + + +T L + L A +Y SD + I
Sbjct: 2 AYLFFTNRHEVRKMTLDRSEYTSL---IPNLRNVVALDTEVASNRIYWSDLSQRMICST- 57
Query: 251 SLESVADPSINWEVAVGSGERCIPGDETNCGDNGPALAAKLSHPKGLAI-KADKTMFIAD 309
++ V S + I D + P GLA+ ++ D
Sbjct: 58 --------QLDRAHGVSSYDTVISRD--------------IQAPDGLAVDWIHSNIYWTD 95
Query: 310 GTN--IRVVSPEGIIHTLIGHHKHHNI-------------WSPFNCHRSFPAS------- 347
+ V +G+ + W+ +
Sbjct: 96 SVLGTVSVADTKGVKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDI 155
Query: 348 ----TAQLQWPTGLALSPLDDSLHFIDDR 372
T +QWP G+ L L L+++D +
Sbjct: 156 YSLVTENIQWPNGITLDLLSGRLYWVDSK 184
>2fp8_A Strictosidine synthase; six bladed beta propeller fold, lyase;
2.30A {Rauvolfia serpentina} PDB: 2fp9_A* 2fpc_A*
2vaq_A* 3v1s_A* 2fpb_A* 2v91_A*
Length = 322
Score = 32.0 bits (72), Expect = 0.71
Identities = 14/92 (15%), Positives = 29/92 (31%), Gaps = 14/92 (15%)
Query: 182 PVALTSGPDGSLYVGDFNLVR------------RLTPEGNVFTVLQLSATQVSYQYYLAL 229
P + DG +V + + GN+ V+ L +++ +
Sbjct: 231 PGNIKRNADGHFWVSSSEELDGNMHGRVDPKGIKFDEFGNILEVIPLPPPFA-GEHFEQI 289
Query: 230 SPADGHLYISDAEKHQILRVLSLESVADPSIN 261
DG LYI + L + + ++
Sbjct: 290 QEHDGLLYIGTLFHGSVGI-LVYDKKGNSFVS 320
>2hi6_A UPF0107 protein AF0055; structural genomics, PSI-2, protein
structure initiative, northeast structural genomics
consortium, NESG; NMR {Archaeoglobus fulgidus} SCOP:
c.8.2.3
Length = 141
Score = 30.0 bits (67), Expect = 1.3
Identities = 10/49 (20%), Positives = 19/49 (38%), Gaps = 1/49 (2%)
Query: 286 ALAAKLSH-PKGLAIKADKTMFIADGTNIRVVSPEGIIHTLIGHHKHHN 333
A+ A ++ P + G + V + EG + + H HH+
Sbjct: 92 AVGAAMAEIPLVEVRDEKFFEAVKTGDRVVVNADEGYVELIELEHHHHH 140
>2oiz_A Aromatic amine dehydrogenase, large subunit; oxidoreductase,
tryptophan tryptophyl quinone, H-tunneling; HET: TRQ TSR
PG4; 1.05A {Alcaligenes faecalis} PDB: 2agw_A* 2agx_A*
2agl_A* 2agz_A* 2ah0_A* 2ah1_A* 2hj4_A* 2hjb_A* 2i0t_A*
2iup_A* 2iuq_A* 2iur_A* 2iuv_A* 2agy_A* 2ok4_A* 2ok6_A*
2iaa_A* 2h47_A* 2h3x_A* 2hkr_A* ...
Length = 361
Score = 30.2 bits (67), Expect = 2.9
Identities = 33/271 (12%), Positives = 74/271 (27%), Gaps = 40/271 (14%)
Query: 212 TVLQLSATQVSYQYYLALSPADGHLYISDAEKHQILRVLSLES------VADPSINWEVA 265
++ ++Y + + + +A + ++ + V + W V
Sbjct: 98 SLPPKRVQGLNYDGLFRQTTDGKFIVLQNASPATSIGIVDVAKGDYVEDVTAAAGCWSVI 157
Query: 266 VGSGERCIPGDETNCGDNGPALAAKLSHPKGLAIKADKTMF-----------IADGTNIR 314
T CGD G K + K MF D
Sbjct: 158 PQPNRP--RSFMTICGDGGLLTINLGEDGKVASQSRSKQMFSVKDDPIFIAPALDKDKAH 215
Query: 315 VVSPEGIIHTLIGHHKHHNIWSPFNCHRSFPASTAQLQWPTG---LALSPLDDSLHFIDD 371
VS G +++ + P++ A+ P G + L ++
Sbjct: 216 FVSYYGNVYSADFSGDEVKVDGPWS--LLNDEDKAKNWVPGGYNLVGLHRASGRMYVFMH 273
Query: 372 RVIFKLTNDLKVKIVAGIPLHCRTGDKDKRDFKDKQSKTKKSTVQDDSVRASNMDLGSLT 431
+ T+ + + D ++K + + + + +D
Sbjct: 274 PDGKEGTHKFPAAEIWVM---------------DTKTKQRVARIPGRDALSMTID-QQRN 317
Query: 432 ALAFSPTGDLYIADIDARKVNALRVIDSTGR 462
+ G++ + DI + LR I+
Sbjct: 318 LMLTLDGGNVNVYDISQPEPKLLRTIEGAAE 348
>3s94_A LRP-6, low-density lipoprotein receptor-related protein; WNT, LDL
receptor-like protein, dickko YWTD B-propeller,
signaling protein; HET: NAG; 2.80A {Homo sapiens}
Length = 619
Score = 29.8 bits (66), Expect = 4.1
Identities = 30/173 (17%), Positives = 63/173 (36%), Gaps = 50/173 (28%)
Query: 201 VRRLTPEGNVFTVLQLSATQVSYQYYLALSPADGHLYISDAEKHQILRVLSLESVADPSI 260
+RR++ + FT + L + + + P +G++Y +D E I R I
Sbjct: 328 LRRISLDTPDFTDIVLQLEDIRHAIAIDYDPVEGYIYWTDDEVRAIRRS---------FI 378
Query: 261 NWEVAVGSGERCIPGDETNCGDNGPALAAKLSHPKGLAI-KADKTMFIADGTN--IRVVS 317
+ GSG + + + A+++HP G+A+ + ++ D I V
Sbjct: 379 D-----GSGSQFV-------------VTAQIAHPDGIAVDWVARNLYWTDTGTDRIEVTR 420
Query: 318 PEGIIHTLIGHHKHHNIWSPFNCHRSFPASTAQLQWPTGLALSPLDDSLHFID 370
G + ++ L+ P + L P+ +++ D
Sbjct: 421 LNGTMRKILISE--------------------DLEEPRAIVLDPMVGYMYWTD 453
>3p5b_L Low density lipoprotein receptor variant; B-propellor, convertase,
hydrolase-lipid binding P complex; 3.30A {Homo sapiens}
PDB: 3p5c_L
Length = 400
Score = 29.8 bits (66), Expect = 4.1
Identities = 50/297 (16%), Positives = 94/297 (31%), Gaps = 54/297 (18%)
Query: 55 TYEADPNLTHVFTWNKRNVYKQKVYGVAQCKISIGYEHESCSSIVWETQTCTLQGFDVDI 114
T + + + +K+ S+ + ++ E + + D+
Sbjct: 74 TKACKAVGSIAYLFFTNRHEVRKMTLDRSEYTSLIPNLRNVVALDTEVASNRIYWSDLSQ 133
Query: 115 SDIGGWSLDVHHHYNFHEGILQKGDGSSLHLKHE-----------FPRTVSVVMGTGLQR 163
I LD H + ++ ++ + + L + TVSV G++R
Sbjct: 134 RMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTKGVKR 193
Query: 164 PLVCKDCDGVARDARLLTPVALTSGP-DGSLYVGDFNL---VRRLTPEGNVFTVLQLSAT 219
+ ++ P A+ P G +Y D+ +++ G L
Sbjct: 194 KTLFREN--------GSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYSLV--TE 243
Query: 220 QVSYQYYLALSPADGHLYISDAEKHQILRVLSLESVADPSINWEVAVGSGERCIPGDETN 279
+ + + L G LY D++ H I SI+ G + I DE
Sbjct: 244 NIQWPNGITLDLLSGRLYWVDSKLHSI-----------SSIDVN---GGNRKTILEDEKR 289
Query: 280 CGDNGPALAAKLSHPKGLAIKADKTMFIADGTNIRVVS---PEGIIHTLIGHHKHHN 333
L+HP LA+ DK +F D N + S G L+ +
Sbjct: 290 -----------LAHPFSLAVFEDK-VFWTDIINEAIFSANRLTGSDVNLLAENLLSP 334
>3e5z_A Putative gluconolactonase; X-RAY NESG Q9RXN3 gluconolactonase,
structural genomics, PSI protein structure initiative;
2.01A {Deinococcus radiodurans}
Length = 296
Score = 29.3 bits (66), Expect = 4.2
Identities = 28/159 (17%), Positives = 46/159 (28%), Gaps = 50/159 (31%)
Query: 189 PDGSLYVGDF-------------------NLVRRLTPEGNVFTVLQLSATQVSYQYYLAL 229
PDGSL+ D V RL P+G + LA
Sbjct: 124 PDGSLWFSDPTYGIDKPEEGYGGEMELPGRWVFRLAPDGTLSAP----IRDRVKPNGLAF 179
Query: 230 SPADGHLYISDAEKHQILRVLSLESVADPSINWEVAVGSGERCIPGDETNCGDNGPALAA 289
P G+L +SD + R + + G
Sbjct: 180 LP-SGNLLVSDTGDNATHR-------------YCLN----------ARGETEYQGVHFTV 215
Query: 290 KLSHPKGLAIKADKTMFIADGTNIRVVSPEGIIHTLIGH 328
+ GL + A ++ + G + V++P+G +G
Sbjct: 216 EPGKTDGLRVDAGGLIWASAGDGVHVLTPDG---DELGR 251
Score = 28.5 bits (64), Expect = 9.1
Identities = 8/30 (26%), Positives = 16/30 (53%), Gaps = 1/30 (3%)
Query: 433 LAFSPTGDLYIADIDARKVNALRVIDSTGR 462
LAF P+G+L ++D + + ++ G
Sbjct: 177 LAFLPSGNLLVSDTGDNATHRYCL-NARGE 205
>2wg3_C Hedgehog-interacting protein; lipoprotein, development, membrane,
secreted, protease, PALM hydrolase, developmental
protein, autocatalytic cleavage; HET: NAG; 2.60A {Homo
sapiens} PDB: 2wg4_B 2wfx_B 2wft_A 3ho3_A 3ho4_A 3ho5_A
Length = 463
Score = 29.2 bits (65), Expect = 5.5
Identities = 16/119 (13%), Positives = 31/119 (26%), Gaps = 9/119 (7%)
Query: 169 DCDGVARDARLLTPVALTS---GPDGSLYVGDFNLVRRLTPEGNVFTVLQLSATQVSYQY 225
C G + R + G +Y+ + T G ++ ++ + +
Sbjct: 322 LCLGTSGSCRGYFSGHILGFGEDELGEVYILSSSKSMTQTHNGKLYKIVDPKRPLMPEEC 381
Query: 226 YLALSPADGHLYISDAEKHQILRVLSLESVADPSINWEVAVGSGERCIPGDETNCGDNG 284
+ PA + + P WE +C P C G
Sbjct: 382 RATVQPAQTLTSECSRLCRNGYCTPTGKCCCSPG--WEGDFCRTAKCEP----ACRHGG 434
>1zu0_A Chitin oligosaccharide binding protein; alpha helix/beta sheet,
sugar binding protein, signaling protein; HET: CBS;
2.20A {Vibrio cholerae} PDB: 1zty_A*
Length = 529
Score = 29.3 bits (66), Expect = 6.1
Identities = 4/55 (7%), Positives = 12/55 (21%), Gaps = 2/55 (3%)
Query: 628 DRVIFKLTNDLKIR--ALKKGRFDVTYDYDHLDRLSVRKDNYGNITQFFYNNHEY 680
D + + + D T + + N + + +
Sbjct: 193 DCLRVPQIANNDQLLGKIVNSELDWTSSFVPDIDRTYAAANPNHHYWYPAAGTQA 247
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.320 0.136 0.414
Gapped
Lambda K H
0.267 0.0620 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 12,020,073
Number of extensions: 740420
Number of successful extensions: 2049
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1877
Number of HSP's successfully gapped: 104
Length of query: 770
Length of database: 6,701,793
Length adjustment: 101
Effective length of query: 669
Effective length of database: 3,881,772
Effective search space: 2596905468
Effective search space used: 2596905468
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 61 (27.5 bits)