RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy4832
(770 letters)
>d2p4oa1 b.68.6.3 (A:4-305) Hypothetical protein All0351 homologue
{Nostoc punctiforme [TaxId: 272131]}
Length = 302
Score = 40.8 bits (94), Expect = 4e-04
Identities = 35/320 (10%), Positives = 83/320 (25%), Gaps = 53/320 (16%)
Query: 212 TVLQLSATQVSYQYY-------LALSPADGHLYISDAEKHQILRVLSLESVADPSINWEV 264
++L+ ++ + LA +P DG +++++ E +I+ + P N ++
Sbjct: 11 KPIELAPAKIITSFPVNTFLENLASAP-DGTIFVTNHEVGEIVSI-------TPDGNQQI 62
Query: 265 AVGSGERCIPGDETNCGDNGPALAAKLSHPKGLAIKADKTMFIADGTNIRVVSPEGIIHT 324
GLA ++ + + +
Sbjct: 63 HATVE----------------------GKVSGLAFTSNGDLVATGWNADSIPVVSLVKSD 100
Query: 325 LIGHHKHHNIWSPFNCHRSFPASTAQLQWPTGLALSPLDDSLHFIDDRVIFKLTNDLKVK 384
+ F + + T L + L D + + L
Sbjct: 101 GTVETLLTLPDAIFLNGITPLSDTQYLTADSYRGAIWLIDVVQPSGSIWL--EHPMLARS 158
Query: 385 IVAGIPLHCRTGDKDKRDFKDKQSKTKKSTVQDD------SVRASNMDLGSLTALAFSPT 438
+ + ++ ++ ++ AF
Sbjct: 159 NSESVFPAANGLKRFGNFLYVSNTEKMLLLRIPVDSTDKPGEPEIFVEQTNIDDFAFDVE 218
Query: 439 GDLYIADIDARKVNALRVIDSTGRMFDFAGRWQSDKKNCNTTNCA--EFEKNSKETLLTS 496
G+LY A N++ I A +++ +T A + E + + +
Sbjct: 219 GNLYGATHIY---NSVVRIAPDRSTTIIAQ---AEQGVIGSTAVAFGQTEGDCTAIYVVT 272
Query: 497 TARFTSISALSVSPDGVVNV 516
V P VV +
Sbjct: 273 NGGMFLPPPTGVVPANVVRL 292
Score = 32.7 bits (73), Expect = 0.15
Identities = 29/223 (13%), Positives = 62/223 (27%), Gaps = 17/223 (7%)
Query: 185 LTSGPDGSLYVGDF--NLVRRLTPEGNVFTVLQLSAT----QVSYQYYLALSPADGHLYI 238
L S PDG+++V + + +TP+GN + + L + +
Sbjct: 33 LASAPDGTIFVTNHEVGEIVSITPDGNQQIHATVEGKVSGLAFTSNGDLVATGWNADSIP 92
Query: 239 SDAEKHQILRVLSLESVADPSINWEVAVGSGERCIPGDETNCG-----DNGPALAAKLSH 293
+ V +L ++ D + S + + D P+ + L H
Sbjct: 93 VVSLVKSDGTVETLLTLPDAIFLNGITPLSDTQYLTADSYRGAIWLIDVVQPSGSIWLEH 152
Query: 294 PKGLAIKADKTMFIADGTNIRVVSPEGIIHTLIGHHKHHNIWSPFNCHRSFPASTAQLQW 353
P ++ A+G + + I P +
Sbjct: 153 PMLARSNSESVFPAANGLKR---FGNFLYVSNTEKMLLLRIPVDSTDKPGEPEIFVEQTN 209
Query: 354 PTGLALSPLDDSLHF--IDDRVIFKLTNDLKVKIVAGIPLHCR 394
A + +L+ + ++ D I+A
Sbjct: 210 IDDFAFDV-EGNLYGATHIYNSVVRIAPDRSTTIIAQAEQGVI 251
>d2dg1a1 b.68.6.1 (A:6-324) Lactonase Drp35 {Staphylococcus aureus
[TaxId: 1280]}
Length = 319
Score = 35.1 bits (79), Expect = 0.028
Identities = 29/277 (10%), Positives = 64/277 (23%), Gaps = 21/277 (7%)
Query: 232 ADGHLYISDAEKHQILRVLSLESVADPSINWEVAVGSGERCIPGDETNCGDNGPALAAKL 291
G L++ D + I ++ +P + P D +
Sbjct: 49 RQGQLFLLDVFEGNIFKI-------NPETKEIKRPFVSHKANPAAIKIHKDGRLFVCYLG 101
Query: 292 SHPKGLAIKADKTMFIADGTNIRVVSPEGIIHTLIGHHKHHNIWSPFNCHRSFPASTAQL 351
I A I +S I ++ K ++ F + + P
Sbjct: 102 DFKSTGGIFAATENGDNLQDIIEDLSTAYCIDDMVFDSKGGFYFTDFRGYSTNP------ 155
Query: 352 QWPTGLALSPLDDSLHFIDDRVIFKLTNDLKVKIVAGIPLHCRTGDKDKRDFKDKQSKTK 411
+SP ++ I + L + +D +
Sbjct: 156 -LGGVYYVSPDFRTVTPIIQNISVANGIALSTDEKVLWVTETTANRLHRIALEDDGVTIQ 214
Query: 412 KSTVQDDSVRASNMDLGSLTALAFSPTGDLYIADIDARKVNALRVIDSTGRMFDFAGRWQ 471
+ + +LY+A +V V + G
Sbjct: 215 PFGATIPYYFTGHE---GPDSCCIDSDDNLYVAMYGQGRV---LVFNKRGYPIGQILIPG 268
Query: 472 SDKKNCNTTNCAEFEKNSKETLLTSTARFTSISALSV 508
D+ + + +F L+ + +
Sbjct: 269 RDEGHMLRSTHPQFIPG-TNQLIICSNDIEMGGGSML 304
>d1rwia_ b.68.9.1 (A:) Serine/threonine-protein kinase PknD
{Mycobacterium tuberculosis [TaxId: 1773]}
Length = 260
Score = 34.1 bits (76), Expect = 0.043
Identities = 16/43 (37%), Positives = 26/43 (60%), Gaps = 5/43 (11%)
Query: 291 LSHPKGLAIKADKTMFIADGTNIRVVSPEGIIHTLIGHHKHHN 333
L+ P +A+ +D+T+++AD N RVV T + HH HH+
Sbjct: 223 LNTPLAVAVDSDRTVYVADRGNDRVV-----KLTSLEHHHHHH 260
Score = 32.9 bits (73), Expect = 0.11
Identities = 14/55 (25%), Positives = 27/55 (49%), Gaps = 3/55 (5%)
Query: 199 NLVRRLTPEGNVFTVLQLSATQVSYQYYLALSPADGHLYISDAEKHQILRVLSLE 253
N V +L TVL T ++ +A+ D +Y++D +++++ SLE
Sbjct: 203 NQVVKLLAGSTTSTVL--PFTGLNTPLAVAVDS-DRTVYVADRGNDRVVKLTSLE 254
Score = 31.4 bits (69), Expect = 0.32
Identities = 40/290 (13%), Positives = 69/290 (23%), Gaps = 55/290 (18%)
Query: 180 LTPVALTSGPDGSLYV---GDFNLVRRLTPEGNVFTVLQLSATQVSYQYYLALSPADGHL 236
L+P + G++YV G + V +L TVL + + LA+ A
Sbjct: 14 LSPSGVAVDSAGNVYVTSEGMYGRVVKLATGSTGTTVLPFN--GLYQPQGLAVDGAGTVY 71
Query: 237 YISDAEKHQILRVLSLESVADPSI----NWEVAVGSGERCIPGDETNCGDNGPALAAKLS 292
+ L S P +AV + D N A +K
Sbjct: 72 VTDFNNRVVTLAAGSNNQTVLPFDGLNYPEGLAVDTQGAVYVADRGNNRVVKLAAGSKTQ 131
Query: 293 HPKGLAIKADKTMFIADGTNIRVVSPEGIIHTLIGHHKHHNIWSPFNCHRSFPASTAQLQ 352
D D + V+ + + +N + P A +
Sbjct: 132 TVLPFTGLNDPDGVAVDNSGNVYVTDTDNNRVVKLEAESNNQVVLPFTDITAPWGIAVDE 191
Query: 353 WPTGLALSPLDDSLHFIDDRVIFKLTNDLKVKIVAGIPLHCRTGDKDKRDFKDKQSKTKK 412
+ + + KL V
Sbjct: 192 A--------GTVYVTEHNTNQVVKLLAGSTTSTVLPFT---------------------- 221
Query: 413 STVQDDSVRASNMDLGSLTALAFSPTGDLYIADIDARKVNALRVIDSTGR 462
L + A+A +Y+AD +V + S
Sbjct: 222 -------------GLNTPLAVAVDSDRTVYVADRGNDRV---VKLTSLEH 255
Score = 29.1 bits (63), Expect = 2.2
Identities = 19/148 (12%), Positives = 39/148 (26%), Gaps = 2/148 (1%)
Query: 64 HVFTWNKRNVYKQKVYGVAQCKISIGYEHESCSSIVWETQTCTLQGFDVDISDIGGWSLD 123
+ + V A K + + + D + L+
Sbjct: 108 QGAVYVADRGNNRVVKLAAGSKTQTVLPFTGLNDPDGVAVDNSGNVYVTDTDNNRVVKLE 167
Query: 124 VHHHYNFHEGILQKGDGSSLHLKHEFPRTVSVVMGTGLQRPLVCKDCDGVARDARLLTPV 183
+ + + V+ + + L V L TP+
Sbjct: 168 AESNNQVVLPFTDITAPWGIAVDEAGTVYVTEHNTNQVVKLLAGSTTSTVLPFTGLNTPL 227
Query: 184 ALTSGPDGSLYVGDF--NLVRRLTPEGN 209
A+ D ++YV D + V +LT +
Sbjct: 228 AVAVDSDRTVYVADRGNDRVVKLTSLEH 255
>d1q7fa_ b.68.9.1 (A:) Brain tumor cg10719-pa {Fruit fly (Drosophila
melanogaster) [TaxId: 7227]}
Length = 279
Score = 33.9 bits (76), Expect = 0.056
Identities = 11/67 (16%), Positives = 25/67 (37%), Gaps = 2/67 (2%)
Query: 290 KLSHPKGLAIKADKTMFIADGTN--IRVVSPEGIIHTLIGHHKHHNIWSPFNCHRSFPAS 347
+ + P G+A+ A + +AD N I++ EG G + + + +
Sbjct: 21 QFTEPSGVAVNAQNDIIVADTNNHRIQIFDKEGRFKFQFGECGKRDSQLLYPNRVAVVRN 80
Query: 348 TAQLQWP 354
+ +
Sbjct: 81 SGDIIVT 87
Score = 28.8 bits (63), Expect = 2.4
Identities = 7/32 (21%), Positives = 17/32 (53%), Gaps = 3/32 (9%)
Query: 431 TALAFSPTGDLYIADIDARKVNALRVIDSTGR 462
+ +A + D+ +AD + ++ ++ D GR
Sbjct: 26 SGVAVNAQNDIIVADTNNHRI---QIFDKEGR 54
Score = 27.7 bits (60), Expect = 4.9
Identities = 27/277 (9%), Positives = 70/277 (25%), Gaps = 31/277 (11%)
Query: 175 RDARLLTPVALTSGPDGSLYVGDF--NLVRRLTPEGNVFTVLQLSATQVSYQYYLALSPA 232
+ + P + + V D + ++ EG + S Y P
Sbjct: 18 MEGQFTEPSGVAVNAQNDIIVADTNNHRIQIFDKEGRFKFQFGECGKRDSQLLY----PN 73
Query: 233 DGHLYISDAEKHQILRVLSLESVADPSINWEVAVGSGERCIPGDETNCGDNGPALAAKLS 292
+ + + R + + V + G + +
Sbjct: 74 RVAVVRNSGDIIVTERSPTHQIQIYNQYGQFVRKFGATILQHPRGVTVDNKGRIIVVECK 133
Query: 293 HPKGLAIKADKTMFIADGTNIRVVSPEGIIHTLIGHHKHHNIWSPFNCHRSFPASTAQLQ 352
+ + + + G + + P G++ + + ++ +
Sbjct: 134 VMRVIIFDQNGNVLHKFGCSKHLEFPNGVVVNDKQEIFISDNRAHCVKVFNYEGQYLRQI 193
Query: 353 WPTGLALSPLDDSLHFIDDRVIFKLTNDLKVKIVAGIPLHCRTGDKDKRDFKDKQSKTKK 412
G+ P+ ++ + +I N+ + I + G
Sbjct: 194 GGEGITNYPIGVGINSNGEILIADNHNNFNLTIFT------QDG-------------QLI 234
Query: 413 STVQDDSVRASNMDLGSLTALAFSPTGDLYIADIDAR 449
S + S + +A G + +A D R
Sbjct: 235 SAL------ESKVKHAQCFDVALMDDGSVVLASKDYR 265
Score = 27.3 bits (59), Expect = 6.1
Identities = 24/266 (9%), Positives = 67/266 (25%), Gaps = 35/266 (13%)
Query: 499 RFTSISALSVSPDGVVNVADQGSLHILALQHYLPTHDEHGEFKIPYPATNEIYVFNRYGQ 558
+FT S ++V+ + VAD + I +F++ G+
Sbjct: 21 QFTEPSGVAVNAQNDIIVADTN--------------------------NHRIQIFDKEGR 54
Query: 559 HITT--RDMTSGKPRYSFLYSKNTSFGKLSTITDASGNKINFLRDYSNVAQLQWPTGLAL 616
+T+ S + + ++ +
Sbjct: 55 FKFQFGECGKRDSQLLYPNRVAVVRNSGDIIVTERSPTHQIQIYNQYGQFVRKFGATILQ 114
Query: 617 SPLDDSLHFIDDRVIFKLTNDLKIRALKKGRFDVTYDYDHLDRLSVRKDNYGNITQFFYN 676
P ++ ++ + I + G + + + F +
Sbjct: 115 HPRGVTVDNKGRIIVVECKVMRVIIFDQNGNVLHKFGCSKHLE-FPNGVVVNDKQEIFIS 173
Query: 677 NHEYPTQVTHIYSPRYGKLISLVYDERGFLIFAQMFRHKYYIATDQCGTPVMVFNQYGET 736
++ Y +Y + I + + IA + + +F Q G+
Sbjct: 174 DNRAHCVKVFNYEGQYLRQIGGEGITNYPIGVGINSNGEILIADNHNNFNLTIFTQDGQL 233
Query: 737 VREI-----MRSPYGHIVYDSNPYIY 757
+ + + + + +
Sbjct: 234 ISALESKVKHAQCFD-VALMDDGSVV 258
>d1vema2 c.1.8.1 (A:1-417) Bacterial beta-amylase {Bacillus cereus
[TaxId: 1396]}
Length = 417
Score = 28.7 bits (64), Expect = 2.8
Identities = 11/101 (10%), Positives = 29/101 (28%), Gaps = 5/101 (4%)
Query: 652 YDYDHLDRLSVRKDNYGNITQFFYNNHEYPTQVT---HIYSPRYGKLISLVYDERGFLIF 708
+D+ + R + N G + H+ V ++ P + + + D+ +
Sbjct: 63 FDFSYAQRFAQSVKNAGMKMIPIISTHQCGGNVGDDCNVPIPSW--VWNQKSDDSLYFKS 120
Query: 709 AQMFRHKYYIATDQCGTPVMVFNQYGETVREIMRSPYGHIV 749
+K + + + M+ I
Sbjct: 121 ETGTVNKETLNPLASDVIRKEYGELYTAFAAAMKPYKDVIA 161
>d1pjxa_ b.68.6.1 (A:) Diisopropylfluorophosphatase
(phosphotriesterase, DFP) {Squid (Loligo vulgaris)
[TaxId: 6622]}
Length = 314
Score = 28.5 bits (62), Expect = 3.4
Identities = 30/293 (10%), Positives = 67/293 (22%), Gaps = 47/293 (16%)
Query: 189 PDGSLYVGDFNL---------VRRLTPEGNVFTVLQLSATQVSYQYYLALS-PADGHLYI 238
+G Y+ + + R+ + TV+ D +
Sbjct: 27 KNGDFYIVAPEVEVNGKPAGEILRIDLKTGKKTVICKPEVNGYGGIPAGCQCDRDANQLF 86
Query: 239 SDAEKHQILRVLSLESVADPSINWEVAVGSGERCIPGDETNCGDNGPALAAKLSHPKG-L 297
+ +L V +E N ++ P G +
Sbjct: 87 VADMRLGLLVV-------QTDGTFEEIAKKDSEGRRMQGCNDCAFDYEGNLWITAPAGEV 139
Query: 298 AIKADKTMFIADGTNIRVVSPEGIIHTLIGHHKHHN--IWSPFNCHRSFPASTAQLQWPT 355
A +I + +G + + + N N R + A+
Sbjct: 140 APADYTRSMQEKFGSIYCFTTDGQMIQVDTAFQFPNGIAVRHMNDGRPYQLIVAETPTKK 199
Query: 356 GLALSPLDDSLHFIDDRVIFKLTNDLKVKIVAGIPLHCRTGDKDKRDFKDKQSKTKKSTV 415
+ + + +V + G D DF + + +
Sbjct: 200 LWS-YDIKGPAKIENKKVWGHIP-------------GTHEGGADGMDFDEDNNLL-VANW 244
Query: 416 QDDSVRASNMDLGSL-----------TALAFSPTGD-LYIADIDARKVNALRV 456
+ D G + L F P +++ + + V
Sbjct: 245 GSSHIEVFGPDGGQPKMRIRCPFEKPSNLHFKPQTKTIFVTEHENNAVWKFEW 297
>d1ohwa_ c.67.1.4 (A:) 4-aminobutyrate aminotransferase,
GABA-aminotransferase {Pig (Sus scrofa) [TaxId: 9823]}
Length = 461
Score = 27.3 bits (59), Expect = 7.4
Identities = 13/109 (11%), Positives = 31/109 (28%), Gaps = 3/109 (2%)
Query: 64 HVFTWNKRNVYKQKVYGVAQCKISIGYEHESCSSIVWETQTCTLQGFDVDISDIGGWSLD 123
+ V ++ ++ G+ H+ + D + + ++
Sbjct: 300 FWAHEHWGLDDPADVMTFSKKMMTGGFFHKEEFRPNAPYRIFNTWLGDPSKNLLLAEVIN 359
Query: 124 VHHHYNFHEGILQKGD---GSSLHLKHEFPRTVSVVMGTGLQRPLVCKD 169
+ + G L L+ +P+ +S V G G D
Sbjct: 360 IIKREDLLSNAAHAGKVLLTGLLDLQARYPQFISRVRGRGTFCSFDTPD 408
>d1mdah_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain
{Paracoccus denitrificans [TaxId: 266]}
Length = 368
Score = 27.3 bits (59), Expect = 8.1
Identities = 22/248 (8%), Positives = 50/248 (20%), Gaps = 30/248 (12%)
Query: 222 SYQYYLALSPADGHLYISDAEKHQILRVLSLESVADPSINWEVAVGSGERCIPGDE---- 277
+ + + L + SV S + S PG
Sbjct: 124 PRVHIIGNCASSACLLFFLFGSSAAAGL----SVPGASDDQLTKSASCFHIHPGAAATHY 179
Query: 278 TNCGDNGPALAAKLSHPKGLAIKADKTMFIADGTNIRVVSPEGIIHTLIGHHKHHNIWSP 337
A + + P I + + ++ + +
Sbjct: 180 LGSCPASLAASDLAAAPAAAGIVGAQCTGAQNCSSQAAQANYPGMLVWAVASSILQG--- 236
Query: 338 FNCHRSFPASTAQLQWPTGLALSPLDDSLHFIDDRVIFKLTNDLKVKIVAGIPLHCRTGD 397
PA+ A ++ S + + ++
Sbjct: 237 -----DIPAAGATMKAAIDGNESGRKADNFRSAGFQMVAKLKNTDGIMIL--------TV 283
Query: 398 KDKRDFKDKQSKTKKSTVQDDSVRASNMDLGSLTALAFSPTGD--LYIADIDARKVNALR 455
+ R T T + A+ + G Y L
Sbjct: 284 EHSRSCLAAAENTSSVTASVGQTSGPISNGHDSDAIIAAQDGASDNYANSAGT---EVLD 340
Query: 456 VID-STGR 462
+ D ++ +
Sbjct: 341 IYDAASDQ 348
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.320 0.136 0.414
Gapped
Lambda K H
0.267 0.0415 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 2,917,451
Number of extensions: 139649
Number of successful extensions: 370
Number of sequences better than 10.0: 1
Number of HSP's gapped: 363
Number of HSP's successfully gapped: 23
Length of query: 770
Length of database: 2,407,596
Length adjustment: 92
Effective length of query: 678
Effective length of database: 1,144,436
Effective search space: 775927608
Effective search space used: 775927608
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 57 (26.5 bits)