Query psy4833
Match_columns 141
No_of_seqs 132 out of 414
Neff 4.2
Searched_HMMs 29240
Date Fri Aug 16 18:56:23 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy4833.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/4833hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1uwy_A Carboxypeptidase M; met 99.3 2.9E-12 9.8E-17 109.9 7.4 79 9-92 296-380 (426)
2 1h8l_A Carboxypeptidase GP180 99.2 1.6E-11 5.5E-16 103.3 8.7 78 8-90 300-378 (380)
3 2nsm_A Carboxypeptidase N cata 99.2 1.8E-11 6.1E-16 105.1 7.4 79 9-93 321-400 (439)
4 3mn8_A LP15968P; catalytic dom 99.2 1.9E-11 6.4E-16 105.6 6.9 79 9-92 337-419 (435)
5 3th1_A Chlorocatechol 1,2-diox 97.6 0.00031 1.1E-08 58.0 8.7 73 5-78 96-209 (260)
6 2boy_A 3-chlorocatechol 1,2-di 97.5 0.0011 3.6E-08 54.6 10.7 50 6-55 100-165 (254)
7 2xsu_A Catechol 1,2 dioxygenas 97.5 0.00032 1.1E-08 59.3 7.7 72 8-79 136-247 (312)
8 2azq_A Catechol 1,2-dioxygenas 97.1 0.0028 9.5E-08 53.5 9.9 73 6-78 130-242 (311)
9 3e8v_A Possible transglutamina 97.1 0.0013 4.4E-08 46.2 6.6 42 11-53 3-49 (82)
10 1dmh_A 1,2-CTD, catechol 1,2-d 97.1 0.002 6.8E-08 54.5 8.3 44 8-51 133-193 (311)
11 2bum_A Protocatechuate 3,4-dio 97.0 0.0046 1.6E-07 49.3 9.6 46 6-51 50-116 (209)
12 3hhy_A 1,2-CTD, catechol 1,2-d 97.0 0.0061 2.1E-07 50.8 10.7 45 7-51 130-189 (280)
13 3t63_M 3,4-PCD, protocatechuat 97.0 0.0021 7.3E-08 52.5 7.5 45 7-51 76-140 (238)
14 2bum_B Protocatechuate 3,4-dio 97.0 0.0031 1.1E-07 51.5 8.4 50 6-55 76-146 (241)
15 3o5u_A Chlorocatechol 1,2-diox 96.9 0.0074 2.5E-07 49.8 10.1 45 6-51 101-162 (257)
16 1nkg_A Rhamnogalacturonase B; 96.9 0.0027 9.1E-08 56.6 7.9 77 8-92 257-337 (508)
17 3n9t_A PNPC; phospholipid bind 96.9 0.0038 1.3E-07 52.3 8.3 47 5-51 126-187 (290)
18 1tmx_A Hydroxyquinol 1,2-dioxy 96.8 0.0031 1.1E-07 52.9 7.5 47 5-51 130-190 (293)
19 3kcp_A Cellulosomal-scaffoldin 96.7 0.0025 8.4E-08 54.4 6.2 64 8-74 157-229 (321)
20 3t63_A 3,4-PCD, protocatechuat 96.7 0.01 3.5E-07 47.1 9.1 74 6-80 46-149 (200)
21 1cwv_A Invasin; integrin-bindi 94.4 0.19 6.4E-06 44.0 9.0 63 4-66 23-90 (492)
22 3irp_X URO-adherence factor A; 92.3 0.14 4.7E-06 44.6 4.7 55 9-64 306-371 (429)
23 1cwv_A Invasin; integrin-bindi 91.4 0.6 2.1E-05 40.7 7.8 63 6-68 123-187 (492)
24 1f00_I Intimin; immunoglobulin 90.8 0.44 1.5E-05 39.4 6.0 49 4-53 16-66 (282)
25 1ti6_B Pyrogallol hydroxytrans 89.5 1.2 4E-05 36.1 7.4 69 18-89 205-274 (274)
26 3uaf_A TTR-52; beta barrel/san 88.6 0.98 3.3E-05 32.9 5.8 45 7-53 3-57 (117)
27 3qva_A Transthyretin-like prot 85.8 0.61 2.1E-05 34.3 3.3 55 9-63 10-68 (116)
28 2hr0_A Complement C3 beta chai 84.2 2.4 8.3E-05 37.1 6.9 60 3-64 342-404 (645)
29 2ww8_A RRGA, cell WALL surface 81.5 7.2 0.00025 36.7 9.3 74 11-85 50-130 (893)
30 3hrz_A Cobra venom factor; ser 81.4 4.8 0.00016 35.9 7.8 59 4-65 333-394 (627)
31 3g3l_A Putative uncharacterize 79.8 2.3 8E-05 35.4 4.9 82 6-95 12-98 (327)
32 4ank_A Transthyretin; hormone 79.0 1.6 5.5E-05 33.1 3.4 55 9-63 30-94 (147)
33 3l48_A Outer membrane usher pr 78.0 11 0.00036 26.0 7.2 50 10-64 9-60 (94)
34 3tkv_A FDEC fragment B, attach 76.8 0.5 1.7E-05 40.2 0.0 63 4-67 3-73 (414)
35 2h0e_A Transthyretin-like prot 75.4 1.2 4.1E-05 32.8 1.7 55 9-63 9-70 (121)
36 2g2n_A Transthyretin-like prot 75.0 2.7 9.2E-05 30.6 3.5 54 10-63 5-67 (114)
37 4fxt_A Uncharacterized protein 74.3 14 0.00047 29.3 7.8 68 2-74 2-84 (202)
38 1f86_A Transthyretin Thr119Met 73.2 2.4 8.2E-05 30.9 2.8 53 11-63 3-65 (115)
39 3kpt_A Collagen adhesion prote 72.3 2.8 9.7E-05 34.8 3.5 53 16-68 15-71 (355)
40 2h4e_A Transthyretin; amyloid, 71.7 2.9 0.0001 30.9 3.1 55 9-63 10-74 (127)
41 3iwv_A 5-hydroxyisourate hydro 71.4 1.6 5.4E-05 33.0 1.6 55 9-63 26-91 (138)
42 3kpt_A Collagen adhesion prote 71.2 12 0.00042 30.9 7.1 73 7-79 245-342 (355)
43 1oo2_A Transthyretin; retinol- 70.6 3.1 0.00011 30.5 3.0 53 11-63 4-66 (119)
44 2x5p_A FBA2, fibronectin bindi 70.5 14 0.00048 26.6 6.5 53 2-56 21-75 (121)
45 3tkv_A FDEC fragment B, attach 70.0 5.3 0.00018 33.8 4.7 46 8-53 313-367 (414)
46 4eiu_A Uncharacterized hypothe 68.3 26 0.00088 28.8 8.3 58 2-63 4-76 (249)
47 3prx_B Cobra venom factor; imm 66.1 15 0.0005 36.8 7.5 59 4-65 355-416 (1642)
48 3hn5_A Putative exported prote 65.2 15 0.0005 29.5 6.2 85 2-90 5-105 (215)
49 2pz4_A Protein GBS052; SPAB, G 64.9 5.4 0.00018 31.1 3.5 42 16-57 25-90 (239)
50 3cu7_A Complement C5; Mg domai 64.3 8.3 0.00028 38.0 5.3 61 3-64 363-437 (1676)
51 4acq_A Alpha-2-macroglobulin; 63.2 14 0.00049 36.2 6.8 63 3-65 336-403 (1451)
52 2pz4_A Protein GBS052; SPAB, G 62.7 26 0.00089 27.1 7.1 61 21-81 141-221 (239)
53 1xpn_A Hypothetical protein PA 53.1 17 0.00059 28.1 4.4 19 39-57 110-129 (170)
54 2b39_A C3; thioester, immune d 52.3 7.8 0.00027 38.2 2.9 57 5-64 365-424 (1661)
55 3rfz_B Outer membrane usher pr 51.7 14 0.00046 34.5 4.3 57 2-64 744-802 (843)
56 2x9x_A RRGB, cell WALL surface 40.1 65 0.0022 27.6 6.5 25 9-33 260-288 (444)
57 3qec_A Putative carbohydrate b 39.8 17 0.00059 27.4 2.5 19 39-57 90-109 (150)
58 3mkv_A Putative amidohydrolase 39.6 81 0.0028 22.8 6.1 26 8-33 5-32 (426)
59 2xet_A CAF1A usher, F1 capsule 36.8 30 0.001 22.9 3.1 35 14-51 7-43 (89)
60 3pdd_A Glycoside hydrolase, fa 36.4 1.3E+02 0.0045 22.3 7.8 30 4-34 106-135 (190)
61 1kmo_A FECA, iron(III) dicitra 36.3 7.5 0.00026 33.4 0.0 36 10-53 72-107 (774)
62 2pn5_A TEP1R, thioester-contai 36.0 1.4E+02 0.0047 28.5 8.6 61 3-64 318-383 (1325)
63 4fxk_A Complement C4 beta chai 33.4 1E+02 0.0035 26.3 6.6 61 4-65 360-432 (656)
64 3pf2_A Cell WALL surface ancho 33.3 44 0.0015 27.5 4.2 26 7-32 176-206 (319)
65 2hbp_A Cytoskeleton assembly c 27.5 23 0.00078 23.8 1.2 44 40-93 7-50 (68)
66 3qdh_A Fimbrial structural sub 27.4 65 0.0022 26.0 4.2 46 6-51 152-224 (290)
67 3mtw_A L-arginine carboxypepti 25.5 76 0.0026 22.9 3.9 26 9-34 4-31 (403)
68 2p9r_A Alpha-2-M, alpha-2-macr 23.9 1.5E+02 0.0053 19.2 6.2 62 3-64 13-84 (102)
69 4at0_A 3-ketosteroid-delta4-5a 23.7 29 0.001 29.1 1.5 15 12-26 457-471 (510)
70 3bid_A UPF0339 protein NMB1088 22.1 1.1E+02 0.0037 19.8 3.7 29 40-70 5-34 (64)
71 2y1v_A RRGB, cell WALL surface 21.9 2E+02 0.0068 25.6 6.6 25 9-33 415-443 (605)
72 3hr6_A SPAA, putative surface- 21.8 1.1E+02 0.0039 26.1 4.8 45 7-51 301-365 (436)
No 1
>1uwy_A Carboxypeptidase M; metallopeptidase, GPI-anchor, metalloprotease, zinc, lipoprotein, hydrolase, structural proteomics in europe, spine; HET: NAG; 3.0A {Homo sapiens} SCOP: b.3.2.1 c.56.5.1
Probab=99.31 E-value=2.9e-12 Score=109.94 Aligned_cols=79 Identities=19% Similarity=0.259 Sum_probs=65.0
Q ss_pred EEEEEEEECCCCCeeeeEEEEeccCCCeeec--eEecCCceEEEEecCCCcEEEEEEecCccceEEEEEccCcc----EE
Q psy4833 9 AVVRGQVLSVQGLGITGIRVSVDKDSGRFGF--TLTRGGGWFDMLVNGGGAVTLQFQRSPYRPQTRTVFIPWNQ----IV 82 (141)
Q Consensus 9 ~~IrG~V~D~~GePL~GVsV~Vkgt~~~~G~--TiTD~DG~FsL~V~~g~~~tL~FSyiGY~sqe~~V~~~~n~----~~ 82 (141)
..|+|+|+|++|+||+||+|.++|.. . + ++||.||.|.+.++.| ..+|.||++||+++++.|.+..++ ..
T Consensus 296 ~~I~G~V~D~~g~pi~gA~V~v~g~~-~--~~~~~Td~~G~y~~~l~~G-~Y~l~vs~~Gy~~~~~~v~v~~~~~~~~~~ 371 (426)
T 1uwy_A 296 LGVKGQVFDQNGNPLPNVIVEVQDRK-H--ICPYRTNKYGEYYLLLLPG-SYIINVTVPGHDPHITKVIIPEKSQNFSAL 371 (426)
T ss_dssp CSEEEEEECTTSCBCCSCEEEETTCC-C--SSCCBCCTTCEEEECCCSE-EEEEEEECSSSCCEEEEEEECSSCSSSSCE
T ss_pred ceeEEEEECCCCCccCceEEEEEecc-c--cceeEeCCCCEEEeccCCe-eEEEEEEEcCcccEEEEEEEeCCCccccce
Confidence 46999999999999999999999987 3 6 8999999999987765 457999999999999888887664 22
Q ss_pred EeCCeEEEec
Q psy4833 83 VLPPVKMQLS 92 (141)
Q Consensus 83 ~~~~v~m~~~ 92 (141)
.+ ++.|...
T Consensus 372 ~~-~~~L~~~ 380 (426)
T 1uwy_A 372 KK-DILLPFQ 380 (426)
T ss_dssp EC-CEECSSC
T ss_pred EE-EEEEecC
Confidence 22 6666543
No 2
>1h8l_A Carboxypeptidase GP180 residues 503-882; hydrolase, zinc-dependent protease; HET: NAG BMA NDG GEM; 2.6A {Lophonetta specularioides} SCOP: b.3.2.1 c.56.5.1 PDB: 1qmu_A*
Probab=99.25 E-value=1.6e-11 Score=103.25 Aligned_cols=78 Identities=23% Similarity=0.224 Sum_probs=65.9
Q ss_pred eEEEEEEEECC-CCCeeeeEEEEeccCCCeeeceEecCCceEEEEecCCCcEEEEEEecCccceEEEEEccCccEEEeCC
Q psy4833 8 VAVVRGQVLSV-QGLGITGIRVSVDKDSGRFGFTLTRGGGWFDMLVNGGGAVTLQFQRSPYRPQTRTVFIPWNQIVVLPP 86 (141)
Q Consensus 8 ~~~IrG~V~D~-~GePL~GVsV~Vkgt~~~~G~TiTD~DG~FsL~V~~g~~~tL~FSyiGY~sqe~~V~~~~n~~~~~~~ 86 (141)
...|+|+|+|. +|+||+||+|.+++.. . + ++||.+|.|.+.++.| ..+|.+|++||++++..|.+..++...+ +
T Consensus 300 ~~~i~G~V~D~~~g~pi~~A~V~v~~~~-~-~-~~Td~~G~y~~~l~~G-~Y~l~vs~~Gy~~~~~~v~v~~~~~~~~-~ 374 (380)
T 1h8l_A 300 HRGIWGFVLDATDGRGILNATISVADIN-H-P-VTTYKDGDYWRLLVQG-TYKVTASARGYDPVTKTVEVDSKGGVQV-N 374 (380)
T ss_dssp GCEEEEEEEETTTCSBCTTCEEEETTEE-E-E-EECCTTSEEEECCCSE-EEEEEEECTTBCCEEEEEEECSSCEEEC-C
T ss_pred cccceEEEEeCCCCCccCceEEEEecCc-c-e-eEECCCEEEEEecCCC-cEEEEEEEcCccceEEEEEEcCCCeEEE-E
Confidence 35799999997 8999999999999886 4 5 9999999999987766 5689999999999999999887765444 5
Q ss_pred eEEE
Q psy4833 87 VKMQ 90 (141)
Q Consensus 87 v~m~ 90 (141)
+.|.
T Consensus 375 ~~L~ 378 (380)
T 1h8l_A 375 FTLS 378 (380)
T ss_dssp EEEC
T ss_pred EEec
Confidence 5553
No 3
>2nsm_A Carboxypeptidase N catalytic chain; caroxypeptidase, zinc peptidase, transthyretin-like domain, processing, peptide modification, hydrolase; HET: NAG; 2.10A {Homo sapiens}
Probab=99.21 E-value=1.8e-11 Score=105.08 Aligned_cols=79 Identities=22% Similarity=0.212 Sum_probs=66.1
Q ss_pred EEEEEEEECCCCCeeeeEEEEeccCCCeeeceEecCCceEEEEecCCCcEEEEEEecCccceEEEEEc-cCccEEEeCCe
Q psy4833 9 AVVRGQVLSVQGLGITGIRVSVDKDSGRFGFTLTRGGGWFDMLVNGGGAVTLQFQRSPYRPQTRTVFI-PWNQIVVLPPV 87 (141)
Q Consensus 9 ~~IrG~V~D~~GePL~GVsV~Vkgt~~~~G~TiTD~DG~FsL~V~~g~~~tL~FSyiGY~sqe~~V~~-~~n~~~~~~~v 87 (141)
..|+|+|+|.+|+||+||+|.|+|.. . + ++||.+|.|.+.++.|. .+|.+|++||+++++.|.+ +.++... ++
T Consensus 321 ~~i~G~V~D~~g~pi~gA~V~v~~~~-~-~-~~Td~~G~y~~~l~~G~-Y~l~vs~~Gy~~~~~~v~v~~~~~~~~--~~ 394 (439)
T 2nsm_A 321 QGIKGMVLDQNYNNLANAVISVSGIN-H-D-VTSGDHGDYFRLLLPGI-YTVSATAPGYDPETVTVTVGPAEPTLV--NF 394 (439)
T ss_dssp CSEEEEEECTTSCBCTTCEEEETTEE-E-E-EECCTTSEEEECCCSEE-EEEEEECTTEECEEEEEEECSSSCEEC--CE
T ss_pred cceEEEEEcCCCCCccceEEEEEccc-c-e-eEECCCCeEEEccCCee-EEEEEEecCceeEEEEEEEecCCcceE--eE
Confidence 46999999999999999999999886 4 5 99999999998877664 6899999999999999888 5555443 88
Q ss_pred EEEecC
Q psy4833 88 KMQLSD 93 (141)
Q Consensus 88 ~m~~~d 93 (141)
.|....
T Consensus 395 ~L~~~~ 400 (439)
T 2nsm_A 395 HLKRSI 400 (439)
T ss_dssp ECEEC-
T ss_pred EEccCC
Confidence 887543
No 4
>3mn8_A LP15968P; catalytic domain of alpha/beta-hydrolase fold, C-terminal, A transthyretin-like domain, hydrolase; HET: NAG GEM; 2.70A {Drosophila melanogaster}
Probab=99.20 E-value=1.9e-11 Score=105.60 Aligned_cols=79 Identities=18% Similarity=0.170 Sum_probs=62.1
Q ss_pred EEEEEEEECCCCCeeeeEEEEeccC-CCeeeceEecCCceEEEEecCCCcEEEEEEecCc-cceEEEEEccCcc--EEEe
Q psy4833 9 AVVRGQVLSVQGLGITGIRVSVDKD-SGRFGFTLTRGGGWFDMLVNGGGAVTLQFQRSPY-RPQTRTVFIPWNQ--IVVL 84 (141)
Q Consensus 9 ~~IrG~V~D~~GePL~GVsV~Vkgt-~~~~G~TiTD~DG~FsL~V~~g~~~tL~FSyiGY-~sqe~~V~~~~n~--~~~~ 84 (141)
..|+|+|+|++|+||+||+|.|+|. . . + +.||.+|.|.+.++.|. .+|.+|++|| ++++..|.+..++ ...+
T Consensus 337 ~gv~G~V~D~~G~pi~gA~V~v~g~~~-~-~-~~Td~~G~y~~~l~pG~-Y~l~vs~~Gy~~~~~~~v~v~~~~~~~~~~ 412 (435)
T 3mn8_A 337 IGIKGLVTDASGFPIADANVYVAGLEE-K-P-MRTSKRGEYWRLLTPGL-YSVHASAFGYQTSAPQQVRVTNDNQEALRL 412 (435)
T ss_dssp SSEEEEEECSSSCBCTTCEEEETTCTT-S-C-EECCTTCEEEECCCSEE-EEEEEEBTTBCCCCCEEEEECCCSSSCEEC
T ss_pred ceeEEEEECCCCCccCceEEEEecccc-c-c-eEeCCCCeEEEecCCCc-EEEEEEEcccccceEEEEEEecCCcceeEE
Confidence 3599999999999999999999995 6 3 5 99999999999877664 6899999999 5666666666543 2222
Q ss_pred CCeEEEec
Q psy4833 85 PPVKMQLS 92 (141)
Q Consensus 85 ~~v~m~~~ 92 (141)
++.|.+.
T Consensus 413 -~~~L~~~ 419 (435)
T 3mn8_A 413 -DFKLAPV 419 (435)
T ss_dssp -CEECCBC
T ss_pred -EEEEeec
Confidence 6676654
No 5
>3th1_A Chlorocatechol 1,2-dioxygenase; catechol 1,2-dioxygenase family, oxidoreductase, iron bindin; HET: 3PH GOL; 3.40A {Pseudomonas putida}
Probab=97.55 E-value=0.00031 Score=58.05 Aligned_cols=73 Identities=19% Similarity=0.243 Sum_probs=53.5
Q ss_pred CcceEEEEEEEECCCCCeeeeEEEEec-----c-----------CCCeeeceEecCCceEEEE-ecCC------------
Q psy4833 5 ELRVAVVRGQVLSVQGLGITGIRVSVD-----K-----------DSGRFGFTLTRGGGWFDML-VNGG------------ 55 (141)
Q Consensus 5 ~~r~~~IrG~V~D~~GePL~GVsV~Vk-----g-----------t~~~~G~TiTD~DG~FsL~-V~~g------------ 55 (141)
+.....|+|+|+|.+|+||+||.|-|= | .. ..|...||+||+|.+. +.++
T Consensus 96 ~G~pl~v~G~V~D~~G~Pv~gA~VeiWqad~~G~Y~~~~~~~~~~~-~RG~~~TD~~G~y~F~TI~P~~Ypip~dGp~g~ 174 (260)
T 3th1_A 96 DHKPLIIRGTVRSDTGELLAGAVIDVWHSTPDGLYSGIHDNIPVDY-YRGKLVTDSQGNYRVRTTMPVPYQIPYEGPTGR 174 (260)
T ss_dssp TCCEEEEEEEEEETTSCBCSSCEEEEEECCTTSCCTTTSTTCCTTB-TEEEEECCTTSEEEEEEECCCCEECCCSSHHHH
T ss_pred CCCEEEEEEEEECCCCCCcCCcEEEEEecCCCCcccCcCCCCCCCC-CceEEEeCCCCEEEEEEECCCCCCCCCCCcHHH
Confidence 345789999999999999999999882 1 11 2377999999999996 3332
Q ss_pred ------------CcEEEEEEecCccceEEEEEccC
Q psy4833 56 ------------GAVTLQFQRSPYRPQTRTVFIPW 78 (141)
Q Consensus 56 ------------~~~tL~FSyiGY~sqe~~V~~~~ 78 (141)
..+-+.++.-||+...-+++.+.
T Consensus 175 ll~~~gr~~~RpaHIHf~v~a~g~~~L~Tqiyf~g 209 (260)
T 3th1_A 175 LLGHLGSHTWRPAHVHFKVRKDGFEPLTTQYYFEG 209 (260)
T ss_dssp HHHHTTCCSEECCEEEEEEECTTSCCEEEEEEETT
T ss_pred HHHhcCCCCCCCCeEEEEEEeCCcCeeEEeEecCC
Confidence 22446677778876666666654
No 6
>2boy_A 3-chlorocatechol 1,2-dioxygenase; beta barrel, oxidoreductase; HET: BHO LPP; 1.9A {Rhodococcus opacus}
Probab=97.46 E-value=0.0011 Score=54.64 Aligned_cols=50 Identities=18% Similarity=0.266 Sum_probs=38.9
Q ss_pred cceEEEEEEEECCCCCeeeeEEEEeccCC--C-------------eeeceEecCCceEEEE-ecCC
Q psy4833 6 LRVAVVRGQVLSVQGLGITGIRVSVDKDS--G-------------RFGFTLTRGGGWFDML-VNGG 55 (141)
Q Consensus 6 ~r~~~IrG~V~D~~GePL~GVsV~Vkgt~--~-------------~~G~TiTD~DG~FsL~-V~~g 55 (141)
...+.|+|+|+|.+|+||+||.|-+=... + ..|...||+||+|.+. +.++
T Consensus 100 G~~l~l~G~V~D~~G~Pv~~A~VeiWqada~G~Y~~~~~~~~~~~~rGr~~Td~~G~y~F~TI~Pg 165 (254)
T 2boy_A 100 GDTLIFRGEVVDQEGAPLADVLLDMWQADAAGEYSFINPTLPDYLFRGKIRTDENGRFTLRTIVPA 165 (254)
T ss_dssp SCEEEEEEEEECTTSCBCCSCEEEEECCCTTSCCBTTBTTSCTTTTEEEEECCTTSEEEEEEECCC
T ss_pred CCEEEEEEEEECCCCCCCCCCEEEEEcCCCCCccCCcCCCCCCCCCeeEEEeCCCceEEEEEECCc
Confidence 45689999999999999999999993211 0 1256899999999997 4433
No 7
>2xsu_A Catechol 1,2 dioxygenase; oxidoreductase; HET: PIE; 1.60A {Acinetobacter radioresistens} PDB: 2xsr_A* 2xsv_A*
Probab=97.45 E-value=0.00032 Score=59.35 Aligned_cols=72 Identities=24% Similarity=0.194 Sum_probs=52.7
Q ss_pred eEEEEEEEECCCCCeeeeEEEEeccCC---------------CeeeceEecCCceEEEE-ecCCCc--------------
Q psy4833 8 VAVVRGQVLSVQGLGITGIRVSVDKDS---------------GRFGFTLTRGGGWFDML-VNGGGA-------------- 57 (141)
Q Consensus 8 ~~~IrG~V~D~~GePL~GVsV~Vkgt~---------------~~~G~TiTD~DG~FsL~-V~~g~~-------------- 57 (141)
.+.|+|+|+|.+|+||+||.|.|=... +..|...||+||+|.+. +.++..
T Consensus 136 ~l~v~G~V~D~~G~Pv~gA~VeiWqada~G~Y~~~~~~~~~~~~rGr~~TD~~G~y~F~TI~Pg~Y~ip~dGp~G~lL~~ 215 (312)
T 2xsu_A 136 TLIIEGTVTDTEGNIIEGAKVEVWHANSLGNYSFFDKSQSDFNLRRTILTDVNGKYVALTTMPVGYGCPPEGTTQALLNK 215 (312)
T ss_dssp EEEEEEEEEETTSCBCTTCEEEEECCCTTSCCBTTBTTSCTTTTEEEEECCTTSEEEEEEECCCCEECCTTSHHHHHHHH
T ss_pred eEEEEEEEECCCCCCCCCCEEEEEecCCCCcccCCCCCCCCCCCeeEEEeCCCceEEEEEECcCcccCCCCCcHHHHHHH
Confidence 789999999999999999999994211 01256899999999986 443432
Q ss_pred ----------EEEEEEecCccceEEEEEccCc
Q psy4833 58 ----------VTLQFQRSPYRPQTRTVFIPWN 79 (141)
Q Consensus 58 ----------~tL~FSyiGY~sqe~~V~~~~n 79 (141)
+-+.++--||....-+++++..
T Consensus 216 ~grh~~RpaHIH~~V~a~G~~~L~Tqlyf~~d 247 (312)
T 2xsu_A 216 LGRHGNRPSHVHYFVSAPGYRKLTTQFNIEGD 247 (312)
T ss_dssp TTCCCEECCEEEEEEECTTBCCEEEEEEETTC
T ss_pred hhccCCCCceEEEEEEcCCccceEEEEecCCC
Confidence 1256677788777667777643
No 8
>2azq_A Catechol 1,2-dioxygenase; CTD, lipid, isozyme, intradiol, oxido; HET: PCF; 2.65A {Pseudomonas putida}
Probab=97.13 E-value=0.0028 Score=53.52 Aligned_cols=73 Identities=19% Similarity=0.189 Sum_probs=52.4
Q ss_pred cceEEEEEEEECCCCCeeeeEEEEeccCC--C-------------eeeceEecCCceEEEE-ecCCC-------------
Q psy4833 6 LRVAVVRGQVLSVQGLGITGIRVSVDKDS--G-------------RFGFTLTRGGGWFDML-VNGGG------------- 56 (141)
Q Consensus 6 ~r~~~IrG~V~D~~GePL~GVsV~Vkgt~--~-------------~~G~TiTD~DG~FsL~-V~~g~------------- 56 (141)
...+.|+|+|+|.+|+||+||.|-|=... + ..|...||+||+|.+. +.++.
T Consensus 130 G~~l~v~G~V~D~~G~Pv~gA~VeiWqada~G~Y~~~~~~~~~f~~rGr~~TD~~G~y~F~TI~Pg~Y~~p~dGp~g~lL 209 (311)
T 2azq_A 130 GVVMFLQGQVFDANGKPLAGATVDLWHANTQGTYSYFDSTQSEFNLRRRIITDAEGRYRARSIVPSGYGCDPQGPTQECL 209 (311)
T ss_dssp CCEEEEEEEEECSSSCBCTTCEEEEECCCTTSCCBTTBTTSCTTTTEEEEECCTTCEEEEEEECCCCEECCTTSHHHHHH
T ss_pred CcEEEEEEEEEcCCCCCCCCceeEEEecCCCCccCCCCCCCCCCCCeeEEEeCCCceEEEEEEcCCCcCCCCCCcHHHHH
Confidence 46789999999999999999999883111 0 1256899999999996 33332
Q ss_pred -----------cEEEEEEecCccceEEEEEccC
Q psy4833 57 -----------AVTLQFQRSPYRPQTRTVFIPW 78 (141)
Q Consensus 57 -----------~~tL~FSyiGY~sqe~~V~~~~ 78 (141)
.+-+.++--||....-+++++.
T Consensus 210 ~~~grh~~RpaHIHf~V~a~G~~~L~Tqlyf~~ 242 (311)
T 2azq_A 210 DLLGRHGQRPAHVHFFISAFGHRHLTTQINFAG 242 (311)
T ss_dssp HHHTCCCEECCEEEEEEECTTBCCEEEEEEETT
T ss_pred HhhhccCCCCceEEEEEEcCCcceEEEEEecCC
Confidence 2235666778876666666664
No 9
>3e8v_A Possible transglutaminase-family protein; structural genomics, unknown function, PSI-2, protein structure initiative; 2.40A {Bacteroides fragilis nctc 9343}
Probab=97.13 E-value=0.0013 Score=46.23 Aligned_cols=42 Identities=14% Similarity=0.137 Sum_probs=32.9
Q ss_pred EEEEEECCCCCeeeeEEEEec--cCCCee---eceEecCCceEEEEec
Q psy4833 11 VRGQVLSVQGLGITGIRVSVD--KDSGRF---GFTLTRGGGWFDMLVN 53 (141)
Q Consensus 11 IrG~V~D~~GePL~GVsV~Vk--gt~~~~---G~TiTD~DG~FsL~V~ 53 (141)
+.=+|+|.+|.|.+||.|.++ |.. ++ ....||++|.|+|.+-
T Consensus 3 ~~v~V~d~~GkPV~gA~Vefe~yNya-e~~~~~~~~TD~~G~~s~~~G 49 (82)
T 3e8v_A 3 GSVLVTDAEGQPVADATVEFKVYNYA-EFYTVATKHTDRSGHASLTAG 49 (82)
T ss_dssp EEEEEECTTSCBCTTCEEEEEEEETT-EEEEEEEEECCTTSEEEEECC
T ss_pred EEEEEEcCCCCCCCCCEEEEEEEEch-heeEEEEEEECCCceEEEEEc
Confidence 344799999999999999886 433 22 2368999999999984
No 10
>1dmh_A 1,2-CTD, catechol 1,2-dioxygenase; aromatic hydrocarbon degradation, alpha/beta FO metalloenzyme, substrate, oxidoreductase; HET: LIO; 1.70A {Acinetobacter SP} SCOP: b.3.6.1 PDB: 1dlq_A* 1dlm_A* 1dlt_A*
Probab=97.06 E-value=0.002 Score=54.47 Aligned_cols=44 Identities=11% Similarity=0.217 Sum_probs=35.9
Q ss_pred eEEEEEEEECCCCCeeeeEEEEeccC-----------------CCeeeceEecCCceEEEE
Q psy4833 8 VAVVRGQVLSVQGLGITGIRVSVDKD-----------------SGRFGFTLTRGGGWFDML 51 (141)
Q Consensus 8 ~~~IrG~V~D~~GePL~GVsV~Vkgt-----------------~~~~G~TiTD~DG~FsL~ 51 (141)
.+.|+|+|+|.+|+||+||.|-|=.. .+..|...||+||+|.+.
T Consensus 133 ~l~l~G~V~D~~G~Pv~~A~VeiWqada~G~Ys~~~~~~~~~~~~~RGr~~TD~~G~y~F~ 193 (311)
T 1dmh_A 133 TLILHGTIFDADGKPLPNAKVEIWHANTKGFYSHFDPTGEQQAFNMRRSIITDENGQYRVR 193 (311)
T ss_dssp EEEEEEEEECTTSCBCTTCEEEEEECCTTSCCTTSCTTSCCSTTTTEEEEECCTTSEEEEE
T ss_pred eEEEEEEEEcCCCCCCCCcEEEEEccCCCcccCCcCCcccCCCCCCeeEEEeCCCceEEEE
Confidence 69999999999999999999988211 002256899999999996
No 11
>2bum_A Protocatechuate 3,4-dioxygenase alpha chain; oxidoreductase, aromatic degradation, non-heme iron, beta-SA mixed alpha/beta structure; 1.80A {Acinetobacter SP} SCOP: b.3.6.1 PDB: 1eo2_A 1eob_A* 1eoc_A* 1eoa_A 2buq_A 2bur_A* 2but_A 2buu_A* 2buv_A* 2buw_A* 1eo9_A 2bux_A 2buy_A 2buz_A* 2bv0_A*
Probab=97.01 E-value=0.0046 Score=49.30 Aligned_cols=46 Identities=20% Similarity=0.295 Sum_probs=36.6
Q ss_pred cceEEEEEEEECCCCCeeeeEEEEeccC------------------CC--eeeceEe-cCCceEEEE
Q psy4833 6 LRVAVVRGQVLSVQGLGITGIRVSVDKD------------------SG--RFGFTLT-RGGGWFDML 51 (141)
Q Consensus 6 ~r~~~IrG~V~D~~GePL~GVsV~Vkgt------------------~~--~~G~TiT-D~DG~FsL~ 51 (141)
...+.|+|+|+|.+|+||+||.|-|=.. ++ ..|...| |++|+|.+.
T Consensus 50 G~~l~v~G~V~D~~G~Pv~~A~VeiWqada~G~Y~~~~~~~~~~~~~~f~~rGr~~T~d~~G~y~F~ 116 (209)
T 2bum_A 50 GQRIRLEGQVFDGLGLPLRDVLIEIWQADTNGVYPSQADTQGKQVDPNFLGWGRTGADFGTGFWSFN 116 (209)
T ss_dssp SCEEEEEECEECTTSCBCSSCEEEEECCCTTSCCSSTTCCSCSCCCTTCCCEEEEECCTTTCCEEEE
T ss_pred CCEEEEEEEEECCCCCCCCCCEEEEEecCCCCcccCccCCcccccCCCccceeEEeeeCCCcEEEEE
Confidence 4468999999999999999999988211 10 1266889 999999997
No 12
>3hhy_A 1,2-CTD, catechol 1,2-dioxygenase; beta-sandwich, aromatic hydrocarbons catabolism, dioxygenase metal-binding, oxidoreductase; HET: 6PL; 1.55A {Rhodococcus opacus} PDB: 3hhx_A* 3hgi_A* 3hj8_A* 3hjq_A* 3hjs_A* 3i4v_A* 3hkp_A* 3i51_A* 3i4y_A*
Probab=97.01 E-value=0.0061 Score=50.85 Aligned_cols=45 Identities=22% Similarity=0.387 Sum_probs=36.5
Q ss_pred ceEEEEEEEECCCCCeeeeEEEEeccC-------------C--CeeeceEecCCceEEEE
Q psy4833 7 RVAVVRGQVLSVQGLGITGIRVSVDKD-------------S--GRFGFTLTRGGGWFDML 51 (141)
Q Consensus 7 r~~~IrG~V~D~~GePL~GVsV~Vkgt-------------~--~~~G~TiTD~DG~FsL~ 51 (141)
..+.|+|+|+|.+|+||+||.|-|=.. + +..|...||+||+|.+.
T Consensus 130 ~pl~l~G~V~D~~G~Pv~~A~VeiWqada~G~Ys~~~~~~~~~~lRGr~~TD~dG~y~F~ 189 (280)
T 3hhy_A 130 TPLVFSGQVTDLDGNGLAGAKVELWHADNDGYYSQFAPHLPEWNLRGTIIADEEGRYEIT 189 (280)
T ss_dssp CEEEEEEEEECTTSCBCSSCEEEEECCCTTSCCTTSSTTSCTTTTEEEEECCTTSEEEEE
T ss_pred eEEEEEEEEECCCCCCCCCcEEEEEecCCCCCCCCCCCCCCCCcceEEEEeCCCceEEEE
Confidence 478999999999999999999987211 0 02377899999999996
No 13
>3t63_M 3,4-PCD, protocatechuate 3,4-dioxygenase beta chain; iron III dependent non-heme intradiol dioxygenase, oxidoredu; HET: GOL; 1.54A {Pseudomonas putida} PDB: 3mi1_M* 3mv4_M* 3mi5_M* 3mfl_M* 3mv6_M* 3t67_M 3pca_M* 3pcb_M* 2pcd_M* 3pce_M* 3pcf_M* 3pcc_M* 3pch_M* 3pci_M* 3pcj_M* 3pck_M* 3pcl_M* 3pcm_M* 3pcn_M* 3pcg_M ...
Probab=96.98 E-value=0.0021 Score=52.47 Aligned_cols=45 Identities=24% Similarity=0.392 Sum_probs=36.0
Q ss_pred ceEEEEEEEECCCCCeeeeEEEEec-----c-------------CC--CeeeceEecCCceEEEE
Q psy4833 7 RVAVVRGQVLSVQGLGITGIRVSVD-----K-------------DS--GRFGFTLTRGGGWFDML 51 (141)
Q Consensus 7 r~~~IrG~V~D~~GePL~GVsV~Vk-----g-------------t~--~~~G~TiTD~DG~FsL~ 51 (141)
..+.|+|+|+|.+|+||+||.|-|= | .+ +..|...||+||+|.+.
T Consensus 76 ~~i~l~G~V~D~~G~Pv~~A~VEiWqada~G~Y~~~~d~~~~~~~~~f~~rGr~~TD~~G~y~F~ 140 (238)
T 3t63_M 76 ERIIVAGRVVDQYGKPVPNTLVEMWQANAGGRYRHKNDRYLAPLDPNFGGVGRCLTDSDGYYSFR 140 (238)
T ss_dssp CEEEEEEEEEETTSCBCTTCEEEEEECCTTSCCSSTTCCCSSCCCTTCCCEEEEECCTTSEEEEE
T ss_pred cEEEEEEEEECCCCCCCCCCEEEEEecCCCCCCCCccccccccCCCCcCceeEEEECCCceEEEE
Confidence 5689999999999999999999872 1 00 02266899999999997
No 14
>2bum_B Protocatechuate 3,4-dioxygenase beta chain; oxidoreductase, aromatic degradation, non-heme iron, beta-SA mixed alpha/beta structure; 1.80A {Acinetobacter SP} SCOP: b.3.6.1 PDB: 1eo2_B 1eoa_B 1eob_B* 1eoc_B* 1eo9_B 2buq_B 2bur_B* 2bux_B 2buy_B 2buz_B* 2bv0_B* 2buu_B* 2but_B* 2buv_B* 2buw_B*
Probab=96.96 E-value=0.0031 Score=51.47 Aligned_cols=50 Identities=22% Similarity=0.267 Sum_probs=38.2
Q ss_pred cceEEEEEEEECCCCCeeeeEEEEeccC------------------CC--eeeceEecCCceEEEE-ecCC
Q psy4833 6 LRVAVVRGQVLSVQGLGITGIRVSVDKD------------------SG--RFGFTLTRGGGWFDML-VNGG 55 (141)
Q Consensus 6 ~r~~~IrG~V~D~~GePL~GVsV~Vkgt------------------~~--~~G~TiTD~DG~FsL~-V~~g 55 (141)
...+.|+|+|+|.+|+||+||.|-|=.. ++ ..|...||+||+|.+. +..+
T Consensus 76 G~~i~v~G~V~D~~G~Pv~~A~VeiWqada~G~Y~~~~~~~~~~~~~~f~~rGr~~TD~~G~y~F~TI~Pg 146 (241)
T 2bum_B 76 GERVIVHGYVRDQFGRPVKNALVEVWQANASGRYRHPNDQYIGAMDPNFGGCGRMLTDDNGYYVFRTIKPG 146 (241)
T ss_dssp SCEEEEEEEEEETTSCBCCSCEEEEECCCTTSCCSSTTCCCSSCCCTTCCCEEEEECCTTSEEEEEEECCC
T ss_pred CcEEEEEEEEECCCCCCCCCcEEEEEecCCCceeCCCCCCcccccCCCccceeEEEeCCCceEEEEEecCC
Confidence 3468999999999999999999988311 10 1266899999999997 3334
No 15
>3o5u_A Chlorocatechol 1,2-dioxygenase; beta barrel,oxidoreductase, oxidoreductase; HET: MYY DHB; 2.35A {Rhodococcus opacus} PDB: 3o32_A* 1s9a_A* 3o6j_A* 3o6r_A*
Probab=96.89 E-value=0.0074 Score=49.76 Aligned_cols=45 Identities=20% Similarity=0.121 Sum_probs=37.0
Q ss_pred cceEEEEEEEECCCCCeeeeEEEEecc-----------------CCCeeeceEecCCceEEEE
Q psy4833 6 LRVAVVRGQVLSVQGLGITGIRVSVDK-----------------DSGRFGFTLTRGGGWFDML 51 (141)
Q Consensus 6 ~r~~~IrG~V~D~~GePL~GVsV~Vkg-----------------t~~~~G~TiTD~DG~FsL~ 51 (141)
...+.|+|+|+|.+|+||+||.|-+=. .. ..|...||+||+|.+.
T Consensus 101 G~~l~l~G~V~D~~G~Pv~~A~VeiWqada~G~Ys~~~~~~~~~~~-~RGr~~TD~~G~y~F~ 162 (257)
T 3o5u_A 101 GDRMRFTGSVRDTSGTPITGAVIDVWHSTNDGNYSFFSPALPDQYL-LRGRVVPAEDGSIEFH 162 (257)
T ss_dssp SCEEEEEEEEECTTCCBCTTCEEEEECCCTTSCCTTSCTTSCSSCT-TEEEECCCTTSEEEEE
T ss_pred CCEEEEEEEEECCCCCCCCCcEEEEEecCCCCCCCCcCCCCCcccC-ceeEEEeCCCceEEEE
Confidence 357899999999999999999998721 11 2377899999999997
No 16
>1nkg_A Rhamnogalacturonase B; polysaccharide lyase, carbohydrate active enzyme, pectin, LY; 1.50A {Aspergillus aculeatus} SCOP: b.3.1.2 b.18.1.25 b.30.5.10 PDB: 2xhn_A* 3njv_A* 3njx_A
Probab=96.88 E-value=0.0027 Score=56.64 Aligned_cols=77 Identities=18% Similarity=0.187 Sum_probs=60.3
Q ss_pred eEEEEEEEECCCCCeeeeEEEEe---ccCCCeeeceEecCCceEEEE-ecCCCcEEEEEEecCccceEEEEEccCccEEE
Q psy4833 8 VAVVRGQVLSVQGLGITGIRVSV---DKDSGRFGFTLTRGGGWFDML-VNGGGAVTLQFQRSPYRPQTRTVFIPWNQIVV 83 (141)
Q Consensus 8 ~~~IrG~V~D~~GePL~GVsV~V---kgt~~~~G~TiTD~DG~FsL~-V~~g~~~tL~FSyiGY~sqe~~V~~~~n~~~~ 83 (141)
.-+|+|+|. |.|...+.|.. |+.. +. |.||.+|+|+|. |.+| ..+|.....||..++..|.+..++...
T Consensus 257 RGtVsG~V~---G~~~~~~avv~~~~k~~q--yw-t~td~~G~FtI~~V~pG-tY~L~a~~~G~~~~~~~VtV~aG~t~~ 329 (508)
T 1nkg_A 257 RGKVAGTAS---GADSSMDWVVHWYNDAAQ--YW-TYTSSSGSFTSPAMKPG-TYTMVYYQGEYAVATSSVTVSAGSTTT 329 (508)
T ss_dssp CBEEEEEEE---SSCTTSCEEEEEECSSCE--EE-EECCTTCEEECCCBCSE-EEEEEEEETTEEEEEEEEEECTTCEEE
T ss_pred ccEEEEEEc---CccCCceEEEEEcCCCce--eE-EEECCCCcEEeCCcCCc-eEEEEEEECceEEEEeEEEEcCCCeeE
Confidence 358999998 77644444555 6665 55 999999999996 6666 468999999999889999999888888
Q ss_pred eCCeEEEec
Q psy4833 84 LPPVKMQLS 92 (141)
Q Consensus 84 ~~~v~m~~~ 92 (141)
+. +++.+.
T Consensus 330 l~-i~~~~~ 337 (508)
T 1nkg_A 330 KN-ISGSVK 337 (508)
T ss_dssp CC-EECCCC
T ss_pred ee-eEEecC
Confidence 76 776644
No 17
>3n9t_A PNPC; phospholipid binds, N-terminal helix tunnel, oxidoreductase; HET: HGX FLC; 2.00A {Pseudomonas putida}
Probab=96.87 E-value=0.0038 Score=52.32 Aligned_cols=47 Identities=28% Similarity=0.316 Sum_probs=37.5
Q ss_pred CcceEEEEEEEECCCCCeeeeEEEEeccCC---------------CeeeceEecCCceEEEE
Q psy4833 5 ELRVAVVRGQVLSVQGLGITGIRVSVDKDS---------------GRFGFTLTRGGGWFDML 51 (141)
Q Consensus 5 ~~r~~~IrG~V~D~~GePL~GVsV~Vkgt~---------------~~~G~TiTD~DG~FsL~ 51 (141)
+...+.|+|+|+|.+|+||+||.|-+=... +..|...||+||+|.+.
T Consensus 126 ~G~~l~l~G~V~D~~G~Pv~~A~VeiWqada~G~Y~~~~~~~~~~~lRGr~~TD~~G~y~F~ 187 (290)
T 3n9t_A 126 DGVPALVYGRVLDVQGRPVVGAVLDVWQTADNGMYSGQDPDQPFGNLRGRYRSDNDGCFAIQ 187 (290)
T ss_dssp CSCEEEEEEEEEETTSCBCSSCEEEEECCCTTSCCTTTSTTSCTTTTEEEEECCTTSEEEEE
T ss_pred CCCeEEEEEEEECCCCCCCCCCEEEEEccCCCCCcCCCCCCCCCCCceeEEEeCCCceEEEE
Confidence 345789999999999999999999882110 12377899999999996
No 18
>1tmx_A Hydroxyquinol 1,2-dioxygenase; beta barrel, oxidoreductase; HET: HGX; 1.75A {Pimelobacter simplex}
Probab=96.83 E-value=0.0031 Score=52.87 Aligned_cols=47 Identities=17% Similarity=0.181 Sum_probs=37.5
Q ss_pred CcceEEEEEEEECCCCCeeeeEEEEeccCC--------------CeeeceEecCCceEEEE
Q psy4833 5 ELRVAVVRGQVLSVQGLGITGIRVSVDKDS--------------GRFGFTLTRGGGWFDML 51 (141)
Q Consensus 5 ~~r~~~IrG~V~D~~GePL~GVsV~Vkgt~--------------~~~G~TiTD~DG~FsL~ 51 (141)
+...+.|+|+|+|.+|+||+||.|-|=... +..|...||+||+|.+.
T Consensus 130 ~G~~l~v~G~V~D~~G~Pv~~A~VEiWqada~G~Y~~~~~~~~~~~rGr~~TD~~G~y~F~ 190 (293)
T 1tmx_A 130 AGEPCWVEGTVTDTDGNPVPDARIEVWEADDDGFYDVQYDDDRTAARAHLLSGPDGGYAFW 190 (293)
T ss_dssp CSCEEEEEEEEEETTSCBCTTCEEEEECCCTTSCCGGGSSSCCCCSEEEEECCTTSEEEEE
T ss_pred CCCEEEEEEEEECCCCCCCCCceeEEEecCCCCcccCCccCCCCCceeEEEeCCCceEEEE
Confidence 345689999999999999999999883111 11266899999999996
No 19
>3kcp_A Cellulosomal-scaffolding protein A; dockerin, X-module, carbohydrate metabolism, cell WALL biogenesis/degradation; 1.94A {Clostridium thermocellum atcc 27405} PDB: 3p0d_C 4fl4_C 2b59_B
Probab=96.73 E-value=0.0025 Score=54.37 Aligned_cols=64 Identities=22% Similarity=0.338 Sum_probs=50.6
Q ss_pred eEEEEEEEECC-------CCCeeeeEEEEeccCCCeeeceEecCCceEEEE-ecCCC-cEEEEEEecCccceEEEE
Q psy4833 8 VAVVRGQVLSV-------QGLGITGIRVSVDKDSGRFGFTLTRGGGWFDML-VNGGG-AVTLQFQRSPYRPQTRTV 74 (141)
Q Consensus 8 ~~~IrG~V~D~-------~GePL~GVsV~Vkgt~~~~G~TiTD~DG~FsL~-V~~g~-~~tL~FSyiGY~sqe~~V 74 (141)
..+|+|-|..+ ....-.|++|.+.|+. ..++||.+|+|.|. ++.+. ..+|+|+.-||.+.+++-
T Consensus 157 ~~~vsGYi~~~~~~~~~~~~~~~~G~~V~i~gt~---~sa~tD~~G~f~I~~vp~~~~~ytl~i~~~g~l~~~i~~ 229 (321)
T 3kcp_A 157 GYKVSGYILPDFSFDATVAPLVKAGFKVEIVGTE---LYAVTDANGYFEITGVPANASGYTLKISRATYLDRVIAN 229 (321)
T ss_dssp SEEEEEEEEESSCCCTTTHHHHHSCCEEEETTSS---CEEECCTTSEEEEEEECCEEEEEEEEEECTEECCEEEEE
T ss_pred CceEEEEEccccccccccchhccCCcEEEEEecc---ceeEECCCceEEEeccCCCCccEEEEEeecCceeeeeee
Confidence 46788877542 2446679999999998 36899999999995 77542 368999999999998873
No 20
>3t63_A 3,4-PCD, protocatechuate 3,4-dioxygenase alpha chain; iron III dependent non-heme intradiol dioxygenase, oxidoredu; HET: GOL; 1.54A {Pseudomonas putida} PDB: 1ykl_A* 1ykm_A* 1ykn_A* 1yko_A* 1ykp_A* 2pcd_A 1ykk_A* 3lmx_A* 3lxv_A* 3mfl_A* 3mi1_A* 3mi5_A* 3lkt_A* 3mv6_A* 3pca_A* 3pcb_A* 3pcc_A* 3pcd_A 3pce_A* 3pcf_A* ...
Probab=96.68 E-value=0.01 Score=47.11 Aligned_cols=74 Identities=16% Similarity=0.133 Sum_probs=51.5
Q ss_pred cceEEEEEEEECCCCCeeeeEEEEeccC----------------CCeeeceEecCC-ceEEEE-ecCC-----------C
Q psy4833 6 LRVAVVRGQVLSVQGLGITGIRVSVDKD----------------SGRFGFTLTRGG-GWFDML-VNGG-----------G 56 (141)
Q Consensus 6 ~r~~~IrG~V~D~~GePL~GVsV~Vkgt----------------~~~~G~TiTD~D-G~FsL~-V~~g-----------~ 56 (141)
...+.|+|+|+|.+|+||+||.|-|=.. . ..|...||+| |+|.+. +.++ .
T Consensus 46 G~~l~v~G~V~D~~G~Pv~~A~VeiWqada~G~Y~~~~~~~~~f~-~rGr~~TD~~~G~~~F~TI~Pg~Y~~~~g~~rp~ 124 (200)
T 3t63_A 46 GEHILLLGQVYDGNGHLVRDSFLEVWQADANGEYQDAYNLENAFN-SFGRTATTFDAGEWTLHTVKPGVVNNAAGVPMAP 124 (200)
T ss_dssp SCEEEEEECEECTTSCBCSSCEEEEEECCTTSCCCCBCCTTSSBC-SEEEEECCSSCCSEEEEEECCCCEECTTSCEECS
T ss_pred CCEEEEEEEEECCCCCCCCCCEEEEEccCCCCCcCCCCCCCCCcc-ccceEecCCCCCEEEEEEECCcCcCCCCCCccCC
Confidence 3468999999999999999999987211 1 2367899999 999996 3322 2
Q ss_pred cEEEEEEecCccc-eEEEEEccCcc
Q psy4833 57 AVTLQFQRSPYRP-QTRTVFIPWNQ 80 (141)
Q Consensus 57 ~~tL~FSyiGY~s-qe~~V~~~~n~ 80 (141)
.+-+.+..-||.. ..-+++++...
T Consensus 125 HIH~~V~a~G~~~~L~Tqlyf~~d~ 149 (200)
T 3t63_A 125 HINISLFARGINIHLHTRLYFDDEA 149 (200)
T ss_dssp CEEEEEECTTCSSCEEEEEEEGGGH
T ss_pred EEEEEEeCCCCccceEEeEEcCCCc
Confidence 2445556667764 55556665433
No 21
>1cwv_A Invasin; integrin-binding protein, INV gene, structural protein; HET: CIT; 2.30A {Yersinia pseudotuberculosis} SCOP: b.1.14.1 b.1.14.1 b.1.14.1 b.1.14.1 d.169.1.3
Probab=94.39 E-value=0.19 Score=43.95 Aligned_cols=63 Identities=14% Similarity=0.181 Sum_probs=45.7
Q ss_pred CCcceEEEEEEEECCCCCeeeeEEEEeccCCCee---eceEecCCceEEEEecC--CCcEEEEEEecC
Q psy4833 4 DELRVAVVRGQVLSVQGLGITGIRVSVDKDSGRF---GFTLTRGGGWFDMLVNG--GGAVTLQFQRSP 66 (141)
Q Consensus 4 d~~r~~~IrG~V~D~~GePL~GVsV~Vkgt~~~~---G~TiTD~DG~FsL~V~~--g~~~tL~FSyiG 66 (141)
|..-..+++-+|+|.+|.||+|..|.+.-..+.. +...||.+|.+.+.+.+ .+..++..+.-|
T Consensus 23 dG~~~~~ltatV~D~~Gnpv~g~~Vtf~~~~g~~~~~~t~~Td~~G~a~~tltst~aG~~~VtAt~~g 90 (492)
T 1cwv_A 23 NGKTAITVEFTVADFEGKPLAGQEVVITTNNGALPNKITEKTDANGVARIALTNTTDGVTVVTAEVEG 90 (492)
T ss_dssp SSSSCEEEEEEEECTTSCBCCSCEEEEECCTTCBSCEEEEECCTTSEEEEEEBCSSCEEEEEEEEETT
T ss_pred CCCceEEEEEEEEcCCCCCCCCCEEEEEECCCccccccceeeCCCceEEEEEEcCcceEEEEEEEECC
Confidence 4455678999999999999999999997432110 22579999999998752 234466667666
No 22
>3irp_X URO-adherence factor A; DEV-IGG fold, cell WALL, hemagglutinin, peptidoglycan-anchor secreted, virulence, cell adhesion; 1.50A {Staphylococcus saprophyticus subsp} PDB: 3irz_A 3is0_X 3is1_X
Probab=92.32 E-value=0.14 Score=44.57 Aligned_cols=55 Identities=22% Similarity=0.299 Sum_probs=38.5
Q ss_pred EEEEEEEE-C--------CCCCeeeeEEEEeccCCC-eeeceEecCCceEEEE-ecCCCcEEEEEEe
Q psy4833 9 AVVRGQVL-S--------VQGLGITGIRVSVDKDSG-RFGFTLTRGGGWFDML-VNGGGAVTLQFQR 64 (141)
Q Consensus 9 ~~IrG~V~-D--------~~GePL~GVsV~Vkgt~~-~~G~TiTD~DG~FsL~-V~~g~~~tL~FSy 64 (141)
..|.|.|- | +.+.||+||.|.+....+ ..+.+.||++|.|.+. ++.| ..+++|..
T Consensus 306 ~~igg~Vw~D~n~nG~~D~~e~gl~gv~v~L~d~~G~~v~tttTd~~G~Y~F~~L~~G-~Y~V~~~~ 371 (429)
T 3irp_X 306 GGFGGYVWFDKNNDGVQNDSNAAAAGITVNLLDPTGIRLATTTTDITGHYNFDNLTNG-NYLVEFVM 371 (429)
T ss_dssp EEEEEEEEECTTSSSSSCCSSCBCTTCEEEEECTTSCEEEEEECCTTSEEEEEEEESE-EEEEEECC
T ss_pred EEEccEEEEeCCCCCCcCcCCCCcCCeEEEEEcCCCCEEEEEEeCCCCeEEeCCCCCC-cEEEEEEC
Confidence 56778873 3 234699999999874332 2356899999999997 4555 45677754
No 23
>1cwv_A Invasin; integrin-binding protein, INV gene, structural protein; HET: CIT; 2.30A {Yersinia pseudotuberculosis} SCOP: b.1.14.1 b.1.14.1 b.1.14.1 b.1.14.1 d.169.1.3
Probab=91.42 E-value=0.6 Score=40.74 Aligned_cols=63 Identities=16% Similarity=0.216 Sum_probs=44.7
Q ss_pred cceEEEEEEEECCCCCeeeeEEEEeccCCCeeeceEecCCceEEEEecC--CCcEEEEEEecCcc
Q psy4833 6 LRVAVVRGQVLSVQGLGITGIRVSVDKDSGRFGFTLTRGGGWFDMLVNG--GGAVTLQFQRSPYR 68 (141)
Q Consensus 6 ~r~~~IrG~V~D~~GePL~GVsV~Vkgt~~~~G~TiTD~DG~FsL~V~~--g~~~tL~FSyiGY~ 68 (141)
....+++=+|+|.+|.||+|+.|.+.-..+......||.+|.+.+.+.. .+..++..+.-|..
T Consensus 123 ~~~~tltatv~Da~GNpv~g~~Vtf~~~~g~~~~~Ttd~~G~at~tlts~~aG~~tVtA~v~g~~ 187 (492)
T 1cwv_A 123 LMASTITLELKDTYGDPQAGANVAFDTTLGNMGVITDHNDGTYSAPLTSTTLGVATVTVKVDGAA 187 (492)
T ss_dssp SCCEEEEEECBBTTSCBCCSCCEEEEESSSEECCCEECSSSEEEEEEECSSCEEEEEEEEETTEE
T ss_pred ceeEEEEEEEEcCCCCCcCCcEEEEEECCCceeeeEecCCcEEEEEEEccCceEEEEEEEECCcc
Confidence 3467889999999999999999999755322232344799999998753 23456766666654
No 24
>1f00_I Intimin; immunoglobulin-like fold, C-type lectin-like fold, cell adhesion; 1.90A {Escherichia coli} SCOP: b.1.14.1 b.1.14.1 d.169.1.3 PDB: 1f02_I 1e5u_I
Probab=90.79 E-value=0.44 Score=39.42 Aligned_cols=49 Identities=10% Similarity=0.167 Sum_probs=38.1
Q ss_pred CCcceEEEEEEEECCCCCeeeeEEEEeccCCCee--eceEecCCceEEEEec
Q psy4833 4 DELRVAVVRGQVLSVQGLGITGIRVSVDKDSGRF--GFTLTRGGGWFDMLVN 53 (141)
Q Consensus 4 d~~r~~~IrG~V~D~~GePL~GVsV~Vkgt~~~~--G~TiTD~DG~FsL~V~ 53 (141)
|..-..+++=+|+| +|.||+|..|.+.-+.+.+ ....||.||...+.+.
T Consensus 16 dG~d~~t~tatV~D-~gnpv~g~~V~fs~~~G~l~~~~~~Td~~G~atvtlt 66 (282)
T 1f00_I 16 NGQDAITYTVKVMK-GDKPVSNQEVTFTTTLGKLSNSTEKTDTNGYAKVTLT 66 (282)
T ss_dssp SSCCCEEEEEEEEE-TTEECTTCEEEEEESSSEESCSEEECCTTSEEEEEEE
T ss_pred cCcceEEEEEEEEE-CCcccCCcEEEEEcCCCccccceeEECCCcEEEEEEE
Confidence 45567789999999 9999999999997554100 1267999999999875
No 25
>1ti6_B Pyrogallol hydroxytransferase small subunit; molybdenum binding enzyme, MGD-cofactors, DMSO-reductase family, 4Fe-4S-cluster; HET: MGD BTT; 2.00A {Pelobacter acidigallici} SCOP: b.3.5.1 d.58.1.5 PDB: 1ti2_B* 1ti4_B* 1vld_N* 1vle_N* 1vlf_N*
Probab=89.51 E-value=1.2 Score=36.10 Aligned_cols=69 Identities=23% Similarity=0.219 Sum_probs=52.9
Q ss_pred CCCCeeeeEEEEeccCCCeeeceEecCCceEEEE-ecCCCcEEEEEEecCccceEEEEEccCccEEEeCCeEE
Q psy4833 18 VQGLGITGIRVSVDKDSGRFGFTLTRGGGWFDML-VNGGGAVTLQFQRSPYRPQTRTVFIPWNQIVVLPPVKM 89 (141)
Q Consensus 18 ~~GePL~GVsV~Vkgt~~~~G~TiTD~DG~FsL~-V~~g~~~tL~FSyiGY~sqe~~V~~~~n~~~~~~~v~m 89 (141)
.+++.+.++.|-+.....+...+.||..|.|-+. ++.| ..+|.+..-|| +...++.+ .+..+.+++|.|
T Consensus 205 a~~~~~~~~~vpl~~~~~~va~~~~d~~G~f~~~~l~~G-~y~v~v~a~g~-p~~~~~~~-~~~~~~lg~v~l 274 (274)
T 1ti6_B 205 VQGDCFEGAKVVLKSGGKEVASAETNFFGEFKFDALDNG-EYTVEIDADGK-SYSDTVVI-DDKSVDLGFIKL 274 (274)
T ss_dssp ETTEECTTCEEEEEETTEEEEEEECCTTSEEEEEEECSE-EEEEEEEETTE-EEEEEEEE-SSSCEEEEEEEC
T ss_pred cccccccCCEEEEEcCCcEEEEEeecCcCcEEEeccCCc-ceEEEEecCCC-CccceeEE-ccCccccceeeC
Confidence 5677888877777633212345889999999995 4545 46899999999 99999998 888889988865
No 26
>3uaf_A TTR-52; beta barrel/sandwich, cell engulfment, secreted, protein BIN; 2.01A {Caenorhabditis elegans}
Probab=88.61 E-value=0.98 Score=32.86 Aligned_cols=45 Identities=13% Similarity=0.158 Sum_probs=32.8
Q ss_pred ceEEEEEEEECCCCCe--eeeEEEEecc--------CCCeeeceEecCCceEEEEec
Q psy4833 7 RVAVVRGQVLSVQGLG--ITGIRVSVDK--------DSGRFGFTLTRGGGWFDMLVN 53 (141)
Q Consensus 7 r~~~IrG~V~D~~GeP--L~GVsV~Vkg--------t~~~~G~TiTD~DG~FsL~V~ 53 (141)
+.+.|+|+++= .|+| +.+|.|++-. .. .++.+.||.+|+|.|.-.
T Consensus 3 qsV~V~G~L~C-~~~Pa~~~~V~V~L~d~~~~~~d~Dd-ll~~~~Td~~G~F~l~G~ 57 (117)
T 3uaf_A 3 SCLMATGVLKC-PTDPEAVKKVHIDLWDAAAAAAESDD-LMGRTWSDRNGNFQVTGC 57 (117)
T ss_dssp EEEEEEEEEEC-TTCGGGGSSCEEEEEEHHHHHTTSCC-EEEEEECCTTSEEEEEEE
T ss_pred EEEEEEEEEEe-CCccCCCCCEEEEEEecccccCCchH-hheeeEECCCCEEEEEEE
Confidence 45789999974 4777 5578886642 12 346789999999999854
No 27
>3qva_A Transthyretin-like protein; transthyretin-related protein, 5-hydroxyisourate hydrolase,; HET: PO4; 1.75A {Klebsiella pneumoniae subsp}
Probab=85.78 E-value=0.61 Score=34.28 Aligned_cols=55 Identities=16% Similarity=0.324 Sum_probs=38.9
Q ss_pred EEEEEEEECC-CCCeeeeEEEEeccCCCeeeceEecCCceEEEEec---CCCcEEEEEE
Q psy4833 9 AVVRGQVLSV-QGLGITGIRVSVDKDSGRFGFTLTRGGGWFDMLVN---GGGAVTLQFQ 63 (141)
Q Consensus 9 ~~IrG~V~D~-~GePL~GVsV~Vkgt~~~~G~TiTD~DG~FsL~V~---~g~~~tL~FS 63 (141)
..|+=.|+|. .|.|-+||.|.+-.-...++...||+||+..+-.+ ..+...|+|-
T Consensus 10 ~~lstHVLDt~~G~PAagv~V~L~~~~~~l~~~~Tn~DGR~~~l~~~~~~~G~Y~L~F~ 68 (116)
T 3qva_A 10 STLSTHILDISTGTPAEGVTVSLSREGETLANLVTNAQGRIATFSAAPLPAGRYCLTAE 68 (116)
T ss_dssp BCEEEEEEETTTTEECTTCEEEEEETTEEEEEEECCTTSEECCSCSSCBCSSEEEEEEC
T ss_pred CCeeeEEeecCCCcCCCCCEEEEEEccEeEEEeccCCCCCccccccccCCCceEEEEEe
Confidence 4578899995 79999999999854211346689999999864211 1244678874
No 28
>2hr0_A Complement C3 beta chain; complement component C3B, immune system; HET: THC; 2.26A {Homo sapiens} PDB: 2i07_A* 2wii_A* 2win_A* 2xwj_A* 3l3o_A* 3l5n_A* 3nms_A* 3nsa_A* 3ohx_A* 3t4a_A 2a74_A* 2a73_A* 2qki_A* 3g6j_A 2ice_A* 2icf_A* 2xwb_A*
Probab=84.25 E-value=2.4 Score=37.13 Aligned_cols=60 Identities=13% Similarity=0.094 Sum_probs=40.3
Q ss_pred cCCcceEEEEEEEECCCCCeeeeEEEEeccCCCeeeceEecCCc--eEEEEecC-CCcEEEEEEe
Q psy4833 3 DDELRVAVVRGQVLSVQGLGITGIRVSVDKDSGRFGFTLTRGGG--WFDMLVNG-GGAVTLQFQR 64 (141)
Q Consensus 3 ~d~~r~~~IrG~V~D~~GePL~GVsV~Vkgt~~~~G~TiTD~DG--~FsL~V~~-g~~~tL~FSy 64 (141)
|.+.....+.=+++|.+|.|++|+.|.+.... .+. ..||.+| .|.|..+. .+.+.|++.+
T Consensus 342 ~~~g~~~~~~v~~~~~dG~p~~~~~v~l~~~~-~~~-~~t~~~G~~~~~i~~~~~~g~y~l~v~~ 404 (645)
T 2hr0_A 342 FKPGMPFDLMVFVTNPDGSPAYRVPVAVQGED-TVQ-SLTQGDGVAKLSINTHPSQKPLSITVRT 404 (645)
T ss_dssp CCTTSEEEEEEEEECSSSSBCSCCCEEESSSC-CSC-CCCCTTSEEEEEEECCSCSSCEEEEEEE
T ss_pred cCCCCcEEEEEEEEcCCCCccCCEEEEEecCc-cee-eEECCCCcEEEEEECCCCCeEEEEEEEE
Confidence 34555666666789999999999999986431 112 5678888 66666553 2445566655
No 29
>2ww8_A RRGA, cell WALL surface anchor family protein; IGG, pilus, CNA_B, adhesin, integrin, cell adhesion; HET: EPE; 1.90A {Streptococcus pneumoniae}
Probab=81.47 E-value=7.2 Score=36.67 Aligned_cols=74 Identities=14% Similarity=0.050 Sum_probs=50.0
Q ss_pred EEEEEECCCCCeeeeEEEEeccCCC--eeeceEecCCceEEEE-ecCCCcEEEEEEe--cCcc--ceEEEEEccCccEEE
Q psy4833 11 VRGQVLSVQGLGITGIRVSVDKDSG--RFGFTLTRGGGWFDML-VNGGGAVTLQFQR--SPYR--PQTRTVFIPWNQIVV 83 (141)
Q Consensus 11 IrG~V~D~~GePL~GVsV~Vkgt~~--~~G~TiTD~DG~FsL~-V~~g~~~tL~FSy--iGY~--sqe~~V~~~~n~~~~ 83 (141)
|+-+-+|++|+||+||...+....+ ......||.||.+.+. +..|. .+|.=.. -||. .....|.+..+..+.
T Consensus 50 ~~i~K~d~~~~~L~GA~F~l~~~~~~~~~~~~tTd~~G~~~~~~L~~G~-Y~l~Et~AP~GY~l~~~~~~v~v~~~g~~~ 128 (893)
T 2ww8_A 50 VVIKETGEGGALLGDAVFELKNNTDGTTVSQRTEAQTGEAIFSNIKPGT-YTLTEAQPPVGYKPSTKQWTVEVEKNGRTT 128 (893)
T ss_dssp EEEEEECSTTCBCCCCEEEEEETTTCCEEEEECCTTTCEEEEEEECSEE-EEEEEEECCTTBCCCCCEEEEEECTTCCEE
T ss_pred EEEEEECCCCCccCCCEEEEEECCCCeEEEEEEECCCCeEEECCCCCCc-EEEEEccCCCceecCCccEEEEECCCceEE
Confidence 3334478999999999999875541 1222568999999995 66564 4565555 5886 345677777665555
Q ss_pred eC
Q psy4833 84 LP 85 (141)
Q Consensus 84 ~~ 85 (141)
+.
T Consensus 129 v~ 130 (893)
T 2ww8_A 129 VQ 130 (893)
T ss_dssp ET
T ss_pred Ee
Confidence 44
No 30
>3hrz_A Cobra venom factor; serine protease, glycosilated, multi-domain, complement SYST convertase, complement alternate pathway; HET: NAG P6G; 2.20A {Naja kaouthia} PDB: 3frp_A* 3hs0_A*
Probab=81.35 E-value=4.8 Score=35.90 Aligned_cols=59 Identities=10% Similarity=0.000 Sum_probs=42.7
Q ss_pred CCcceEEEEEEEECCCCCeeeeEEEEeccCCCeeeceEecCCceEEEEec--C-CCcEEEEEEec
Q psy4833 4 DELRVAVVRGQVLSVQGLGITGIRVSVDKDSGRFGFTLTRGGGWFDMLVN--G-GGAVTLQFQRS 65 (141)
Q Consensus 4 d~~r~~~IrG~V~D~~GePL~GVsV~Vkgt~~~~G~TiTD~DG~FsL~V~--~-g~~~tL~FSyi 65 (141)
-|.-...++=+|+|.+|.|++++.|.+.... . . ..||.||.-.+.++ . ...+.|.+.+-
T Consensus 333 kpG~p~~~~v~v~~~dg~P~~~~~V~v~~~~-~-~-~~td~~G~a~f~i~t~~~~~~l~i~~~~~ 394 (627)
T 3hrz_A 333 KPGMPYELTVYVTNPDGSPAAHVPVVSEAFH-S-M-GTTLSDGTAKLILNIPLNAQSLPITVRTN 394 (627)
T ss_dssp CTTSCEEEEEEEECTTSCBCTTCEEEEGGGT-E-E-EECCTTSEEEEEECCCTTCSEEEEEEEEC
T ss_pred cCCCcEEEEEEEECCCCCcCCCceEEEEcCc-c-e-eEECCCCeEEEEEECCCCCcEEEEEEEeC
Confidence 3555667777899999999999999987554 2 3 67999998777653 2 24455666664
No 31
>3g3l_A Putative uncharacterized membrane-associated PROT; YP_211325.1, putative membrane-associated protein of unknown function; 2.20A {Bacteroides fragilis nctc 9343}
Probab=79.82 E-value=2.3 Score=35.36 Aligned_cols=82 Identities=17% Similarity=0.213 Sum_probs=58.3
Q ss_pred cceEEEEEEEECC-CCCeeeeEEEEeccCCCeeeceEecCCceEEEEecCCCcEEEEEEecCccceEEEEEcc----Ccc
Q psy4833 6 LRVAVVRGQVLSV-QGLGITGIRVSVDKDSGRFGFTLTRGGGWFDMLVNGGGAVTLQFQRSPYRPQTRTVFIP----WNQ 80 (141)
Q Consensus 6 ~r~~~IrG~V~D~-~GePL~GVsV~Vkgt~~~~G~TiTD~DG~FsL~V~~g~~~tL~FSyiGY~sqe~~V~~~----~n~ 80 (141)
.-+..|-|.|+|. .|+.|.=++|.+.|.. . + .--+..|.|. .+ + ..|++|.-||-+..++|+++ .+.
T Consensus 12 pAKYyIaGtiTdatTGq~LttAtVTlgg~s-V-t-~~fN~~v~yk--ae-g--yslvVsa~gYy~v~kqVYLnqvsdGqt 83 (327)
T 3g3l_A 12 EAKYYIAGTITDATTGQELTTAKVTLGDKS-V-T-SSFNEQVNYK--AE-G--YALVVSADGYYPVKRQVYLNQVSDGQT 83 (327)
T ss_dssp CCEEEEEEEEEETTTCCBCTTCEEEETTEE-E-C-SEEEEEECCC--TT-C--EEEEEECTTBCCEEEEECCCCCCTTCE
T ss_pred cceEEEEEEeeeccccceEEEEEEEECCeE-E-e-eeccceeeEe--ec-C--ceEEEEecCceeeEEEEEcccccCCce
Confidence 4568999999996 6999999999998876 3 3 3223335443 12 3 35899999999999999997 234
Q ss_pred EEEeCCeEEEecCCC
Q psy4833 81 IVVLPPVKMQLSDAS 95 (141)
Q Consensus 81 ~~~~~~v~m~~~d~~ 95 (141)
.+.--|+.|...+..
T Consensus 84 sVatvdvALvsvea~ 98 (327)
T 3g3l_A 84 SVATVNVALVSVEAA 98 (327)
T ss_dssp EEEEEEEEECBTTCC
T ss_pred EEEEEEEEEEEEeec
Confidence 455556666666553
No 32
>4ank_A Transthyretin; hormone binding protein, thyroxine transport protein, hormon amyloidosis inhibition; 1.70A {Homo sapiens}
Probab=78.98 E-value=1.6 Score=33.10 Aligned_cols=55 Identities=20% Similarity=0.225 Sum_probs=36.9
Q ss_pred EEEEEEEECC-CCCeeeeEEEEecc---CC--CeeeceEecCCceEEEEecC----CCcEEEEEE
Q psy4833 9 AVVRGQVLSV-QGLGITGIRVSVDK---DS--GRFGFTLTRGGGWFDMLVNG----GGAVTLQFQ 63 (141)
Q Consensus 9 ~~IrG~V~D~-~GePL~GVsV~Vkg---t~--~~~G~TiTD~DG~FsL~V~~----g~~~tL~FS 63 (141)
.-|+=.|+|. +|.|-.|+.|.+-. .. ..+....||+|||-.=..++ .+...|+|.
T Consensus 30 ~PLTtHVLDt~~G~PA~gv~V~L~~~~~~~~~~~l~~~~Td~DGR~~~ll~~~~~~~G~Y~L~F~ 94 (147)
T 4ank_A 30 CPLMVKVLDAVRGSPAINVAVHVFRKAADDTWEPFASGKTSESGELHGLTTEEEFVEGIYKVEID 94 (147)
T ss_dssp CCEEEEEEETTTTEECCSCEEEEEEECTTSCEEEEEEEECCTTSEECCSCCTTTCCSEEEEEEEC
T ss_pred CCeEEEEEeCCCCcCCCCCEEEEEEECCCCCeEEEEEEEeCCCCCCCCCCCccccCCceEEEEEE
Confidence 3478889995 89999999998831 11 12355899999997522221 234567774
No 33
>3l48_A Outer membrane usher protein PAPC; IG fold, greek KEY, cell outer membrane, fimbrium, transmembrane, transport, transport protein; 2.10A {Escherichia coli} PDB: 2kt6_A
Probab=77.95 E-value=11 Score=26.05 Aligned_cols=50 Identities=18% Similarity=0.132 Sum_probs=31.6
Q ss_pred EEEEEEECCCCCeee-eEEEEeccCCCeeeceEecCCceEEEE-ecCCCcEEEEEEe
Q psy4833 10 VVRGQVLSVQGLGIT-GIRVSVDKDSGRFGFTLTRGGGWFDML-VNGGGAVTLQFQR 64 (141)
Q Consensus 10 ~IrG~V~D~~GePL~-GVsV~Vkgt~~~~G~TiTD~DG~FsL~-V~~g~~~tL~FSy 64 (141)
.+-=++.+++|+||| |+.|...+.. . - .+...+|.--|. ++..+ +|.+..
T Consensus 9 ~~ll~l~~~dG~plPfGA~V~d~~g~-~-~-giVG~~G~vyl~gl~~~g--~L~V~W 60 (94)
T 3l48_A 9 RLFAILRLADGSQPPFGASVTSEKGR-E-L-GMVADEGLAWLSGVTPGE--TLSVNW 60 (94)
T ss_dssp CEEEEEEETTSCCCCTTCEEECTTCC-E-E-EEBCGGGEEEESSCCTTC--EEEEEC
T ss_pred EEEEEEECCCCCcCCCccEEEcCCCc-e-E-EEECCCCEEEEECCCCCC--EEEEEE
Confidence 333458899999999 8988655433 2 2 466778876665 33334 365554
No 34
>3tkv_A FDEC fragment B, attaching and effacing protein, pathogenesis FACT; invasin, intimin, adhesion vaccination, bacterial immunoglob domain; 1.90A {Escherichia coli} PDB: 4e9l_A
Probab=76.75 E-value=0.5 Score=40.16 Aligned_cols=63 Identities=16% Similarity=0.194 Sum_probs=0.0
Q ss_pred CCcceEEEEEEEECCCCCeeeeEEEEec------cCCCeeeceEecCCceEEEEecCC--CcEEEEEEecCc
Q psy4833 4 DELRVAVVRGQVLSVQGLGITGIRVSVD------KDSGRFGFTLTRGGGWFDMLVNGG--GAVTLQFQRSPY 67 (141)
Q Consensus 4 d~~r~~~IrG~V~D~~GePL~GVsV~Vk------gt~~~~G~TiTD~DG~FsL~V~~g--~~~tL~FSyiGY 67 (141)
|..-..+++-+|.|.+|+||+|+.|.+. +.. .++.+.++.||.|.+.+.+. +..++.-+.-|+
T Consensus 3 dG~~~~tlta~v~D~~Gnpv~g~~V~~~~~~~~~~~~-tl~~~~~~~~G~~t~tlTst~aG~~~VtA~~~~~ 73 (414)
T 3tkv_A 3 DGQQAYTLTLTAVDSEGNPVTGEASRLRLVPQDTNGV-TVGAISEIKPGVYSATVSSTRAGNVVVRAFSEQY 73 (414)
T ss_dssp ------------------------------------------------------------------------
T ss_pred CCccceEEEEEEECCCCCCCCCceeEEEEeecCCCCc-eEcccEEcCCcEEEEEEEccCcceEEEEEEEcCc
Confidence 3445678888999999999999999884 111 22435566799999987532 233455555444
No 35
>2h0e_A Transthyretin-like protein PUCM; beta sandwitch, hydrolase, HIU; 2.20A {Bacillus subtilis} PDB: 2h0f_A* 2h0j_A*
Probab=75.44 E-value=1.2 Score=32.85 Aligned_cols=55 Identities=13% Similarity=0.256 Sum_probs=37.8
Q ss_pred EEEEEEEECC-CCCeeeeEEEEeccC-CCeeeceEecCCceEEE---Eec--CCCcEEEEEE
Q psy4833 9 AVVRGQVLSV-QGLGITGIRVSVDKD-SGRFGFTLTRGGGWFDM---LVN--GGGAVTLQFQ 63 (141)
Q Consensus 9 ~~IrG~V~D~-~GePL~GVsV~Vkgt-~~~~G~TiTD~DG~FsL---~V~--~g~~~tL~FS 63 (141)
..|+=.|+|. .|.|-+|+.|.+-.- ...++...||+||+..- ... ..+...|+|-
T Consensus 9 ~~lstHVLDt~~G~PAagv~V~L~~~~~~~l~~~~Tn~DGR~~~~~~~~~~~~~G~Y~l~F~ 70 (121)
T 2h0e_A 9 GKLTTHILDLTCGKPAANVKIGLKRLGESIMKEVYTNNDGRVDVPLLAGEELMSGEYVMEFH 70 (121)
T ss_dssp CEEECCEEETTTTEECTTCEEEEEETTSCCCEEEECCTTSSCSSCSEEGGGCCSEEEEEEEC
T ss_pred CCeeEEEecCCCcCCCCCCEEEEEECCceEEEEEecCCCCCccCCcCCCCCcCceEEEEEEE
Confidence 3577789995 799999999999541 11346689999999742 211 1245578774
No 36
>2g2n_A Transthyretin-like protein; transthyretin-related protein, unknown functi; 1.65A {Escherichia coli} PDB: 2g2p_A 2igl_A 2gpz_A
Probab=74.96 E-value=2.7 Score=30.62 Aligned_cols=54 Identities=17% Similarity=0.266 Sum_probs=36.5
Q ss_pred EEEEEEECC-CCCeeeeEEEEecc-CC---CeeeceEecCCceEEEEecC----CCcEEEEEE
Q psy4833 10 VVRGQVLSV-QGLGITGIRVSVDK-DS---GRFGFTLTRGGGWFDMLVNG----GGAVTLQFQ 63 (141)
Q Consensus 10 ~IrG~V~D~-~GePL~GVsV~Vkg-t~---~~~G~TiTD~DG~FsL~V~~----g~~~tL~FS 63 (141)
.|+=.|+|. .|.|-+|+.|.+-. .. ..++...||+||+..-..++ .+...|+|-
T Consensus 5 ~lstHVLDt~~G~PAagv~V~L~~~~~~~~~~l~~~~Tn~DGR~~~l~~~~~~~~G~Y~l~F~ 67 (114)
T 2g2n_A 5 ILSVHILNQQTGKPAADVTVTLEKKADNGWLQLNTAKTDKDGRIKALWPEQTATTGDYRVVFK 67 (114)
T ss_dssp CEEEEEEETTTTEECCSCEEEEEEECSSSEEEEEEEECCTTSEESCCSCSSCCCSEEEEEEEC
T ss_pred CeEEEEecCCCcCCCCCCEEEEEEeCCCCcEEEEEEecCCCCccccccCCCCCCceEEEEEEE
Confidence 466789995 79999999999843 11 02456889999997432121 234567774
No 37
>4fxt_A Uncharacterized protein; PF12866 family, DUF3823, structural genomics, joint center F structural genomics, JCSG, protein structure initiative; 2.77A {Bacteroides ovatus}
Probab=74.30 E-value=14 Score=29.25 Aligned_cols=68 Identities=13% Similarity=0.133 Sum_probs=37.6
Q ss_pred CcCCcceEEEEEEEECCCCCeee----eEEEEeccCCCeee-----ceEecCCceEEEEecCCCcEEEEEE----ec--C
Q psy4833 2 TDDELRVAVVRGQVLSVQGLGIT----GIRVSVDKDSGRFG-----FTLTRGGGWFDMLVNGGGAVTLQFQ----RS--P 66 (141)
Q Consensus 2 ~~d~~r~~~IrG~V~D~~GePL~----GVsV~Vkgt~~~~G-----~TiTD~DG~FsL~V~~g~~~tL~FS----yi--G 66 (141)
||| +-.+.++|+|+ .+||||. |+.|++-... ++ ..-...||.|+-.+=.|. ..|... |+ +
T Consensus 2 NYD-~P~a~l~G~iv-~tgE~i~~~~~gv~i~l~e~g--~~~~~~~~~~v~qDGtf~~~lF~G~-Yki~~~~nGpf~~~~ 76 (202)
T 4fxt_A 2 NFE-EPKATLTGKAI-YDGEAVGVRSGSSEFALFQDG--YALKGSIPVYIAQDGSYSVSLFNGD-YKLVRMGNAPWERPS 76 (202)
T ss_dssp -----CEEEEEEEEE-ETTEECBCCTTTEEEEEECCC------CCEEEEBCTTSEEEEEEESEE-EEEEEEETCSBCCCS
T ss_pred CCC-CCCceEEEEEE-ECCCEeeecCCceEEEEEEcc--cCCCCCeeEEEcCCCcEEEEEEcce-eEEEECCCCCcccCC
Confidence 455 45689999999 6798885 7888774332 11 133455888883333343 345443 33 5
Q ss_pred ccceEEEE
Q psy4833 67 YRPQTRTV 74 (141)
Q Consensus 67 Y~sqe~~V 74 (141)
..++++.|
T Consensus 77 ~dti~v~i 84 (202)
T 4fxt_A 77 NDTIYITV 84 (202)
T ss_dssp SCEEEEEE
T ss_pred CceEEEEE
Confidence 55555554
No 38
>1f86_A Transthyretin Thr119Met variant; protein stability, X-RAY amyloidogenesis, transport protein; HET: T44; 1.10A {Homo sapiens} SCOP: b.3.4.1 PDB: 1fhn_A 1bze_A 1fh2_A 1bzd_A 3fcb_A* 3fc8_A* 3cfm_A 3cfn_A* 3cfq_A* 3cft_A* 3m1o_A* 1bmz_A 1bm7_A 1e3f_A* 1e5a_A* 1e4h_A 1ict_A* 1tt6_A* 1tta_A 1tyr_A* ...
Probab=73.15 E-value=2.4 Score=30.87 Aligned_cols=53 Identities=19% Similarity=0.216 Sum_probs=36.2
Q ss_pred EEEEEECC-CCCeeeeEEEEeccC---C--CeeeceEecCCceEEEEecC----CCcEEEEEE
Q psy4833 11 VRGQVLSV-QGLGITGIRVSVDKD---S--GRFGFTLTRGGGWFDMLVNG----GGAVTLQFQ 63 (141)
Q Consensus 11 IrG~V~D~-~GePL~GVsV~Vkgt---~--~~~G~TiTD~DG~FsL~V~~----g~~~tL~FS 63 (141)
|+=.|+|. .|.|-+|+.|.+-.. . ..++...||+||+..-..++ .+...|+|-
T Consensus 3 lstHVLDt~~G~PAagv~V~L~~~~~~~~~~~l~~~~Tn~DGR~~~l~~~~~~~~G~Y~l~F~ 65 (115)
T 1f86_A 3 LMVKVLDAVRGSPAINVAVHVFRKAADDTWEPFASGKTSESGELHGLTTEEEFVEGIYKVEID 65 (115)
T ss_dssp EEEEEEETTTTEECTTCEEEEEEECTTSCEEEEEEEECCTTSEECCSCCTTTCCSEEEEEEEC
T ss_pred eeEEEccCCCCCcCCCCEEEEEEcCCCCCcEEEEEeecCCCccccCcCCCCCCcceEEEEEEE
Confidence 56679995 799999999998321 1 13456899999998522221 245678774
No 39
>3kpt_A Collagen adhesion protein; intramolecular amide bond, pilin subunit, beta sheet; 2.10A {Bacillus cereus atcc 14579} PDB: 3rkp_A
Probab=72.33 E-value=2.8 Score=34.78 Aligned_cols=53 Identities=17% Similarity=0.144 Sum_probs=34.9
Q ss_pred ECCCCCeeeeEEEEeccCCC-ee-eceEecCCceEEEE-ecCCCcEEEEEE-ecCcc
Q psy4833 16 LSVQGLGITGIRVSVDKDSG-RF-GFTLTRGGGWFDML-VNGGGAVTLQFQ-RSPYR 68 (141)
Q Consensus 16 ~D~~GePL~GVsV~Vkgt~~-~~-G~TiTD~DG~FsL~-V~~g~~~tL~FS-yiGY~ 68 (141)
+|++|.||+||...+....+ .. +...||.||.+.+. +..|.....+.. =-||.
T Consensus 15 ~d~~~~~L~GA~F~l~~~~g~~~~~~~tTd~~G~~~~~~L~~G~Y~~~Et~aP~GY~ 71 (355)
T 3kpt_A 15 TGVNEKAMAGAVFSLFKKDGTEVKKELATDANGHIRVQGLEYGEYYFQETKAPKGYV 71 (355)
T ss_dssp ECGGGCBCCSCEEEEEETTSCEEEEEEECCTTSEEEEEEEESEEEEEEEEECCTTBC
T ss_pred ECCCCCCcCCcEEEEEECCCCEEEEEEEECCCCeEEECCcCCceEEEEEEeCCCCeE
Confidence 58889999999999864431 11 22478999999995 555654323333 24776
No 40
>2h4e_A Transthyretin; amyloid, sulfite, familial amyloidotic polyne transport protein; HET: CSU; 1.45A {Homo sapiens} SCOP: b.3.4.1 PDB: 2wqa_A* 1zcr_A 1zd6_A 2trh_A 1bz8_A 2qpf_A 1tfp_A
Probab=71.65 E-value=2.9 Score=30.95 Aligned_cols=55 Identities=20% Similarity=0.219 Sum_probs=37.7
Q ss_pred EEEEEEEECC-CCCeeeeEEEEecc---CC--CeeeceEecCCceEEEEecC----CCcEEEEEE
Q psy4833 9 AVVRGQVLSV-QGLGITGIRVSVDK---DS--GRFGFTLTRGGGWFDMLVNG----GGAVTLQFQ 63 (141)
Q Consensus 9 ~~IrG~V~D~-~GePL~GVsV~Vkg---t~--~~~G~TiTD~DG~FsL~V~~----g~~~tL~FS 63 (141)
..|+=.|+|. .|.|-+|+.|.+-. .. ..++...||+||+..-..++ .+...|+|-
T Consensus 10 ~~LStHVLDt~~G~PAagv~V~L~~~~~~~~w~~l~~~~Tn~DGR~~~ll~~~~~~~G~Y~L~F~ 74 (127)
T 2h4e_A 10 XPLMVKVLDAVRGSPAINVAVHVFRKAADDTWEPFASGKTSESGELHGLTTEEEFVEGIYKVEID 74 (127)
T ss_dssp CCEEEEEEETTTTEECTTCEEEEEEECTTSCEEEEEEEECCTTSEECCSCCTTTCCSEEEEEEEC
T ss_pred CCEEEEEecCCCcCCCCCCEEEEEEeCCCCCeEEEEEeecCCCccccCcCCCCCccceEEEEEEE
Confidence 3477789995 79999999999942 11 13456899999998522221 245678774
No 41
>3iwv_A 5-hydroxyisourate hydrolase; transthyretin, molecular evolution, URIC acid degradation, T hormones, peroxisome, purine metabolism; 1.68A {Danio rerio} PDB: 3iwu_A 3q1e_A 2h6u_A 2h1x_A
Probab=71.45 E-value=1.6 Score=33.00 Aligned_cols=55 Identities=15% Similarity=0.283 Sum_probs=36.8
Q ss_pred EEEEEEEECC-CCCeeeeEEEEeccC------CCeeeceEecCCceEE-EEec---CCCcEEEEEE
Q psy4833 9 AVVRGQVLSV-QGLGITGIRVSVDKD------SGRFGFTLTRGGGWFD-MLVN---GGGAVTLQFQ 63 (141)
Q Consensus 9 ~~IrG~V~D~-~GePL~GVsV~Vkgt------~~~~G~TiTD~DG~Fs-L~V~---~g~~~tL~FS 63 (141)
..|+=.|+|. .|.|-+||.|.+-.- ...++...||+||+-. +... ..+...|+|-
T Consensus 26 ~~LTtHVLDt~~G~PAagv~V~L~~~~~~~~~w~~l~~~~Tn~DGR~~~ll~~~~~~~G~Y~L~F~ 91 (138)
T 3iwv_A 26 SPLSTHVLNIAQGVPGANMTIVLHRLDPVSSAWNILTTGITNDDGRCPGLITKENFIAGVYKMRFE 91 (138)
T ss_dssp CCEECCEEETTTTEECTTCEEEEEEECSSSCCEEEEEEEECCTTSCCTTSSCTTTCCSEEEEEEEC
T ss_pred CCceEEEeecCCccCCCCCEEEEEEECCCCCCcEEEEEEecCCCCCcCCccCcccCCCceEEEEEe
Confidence 3477789995 799999999998421 1123557999999986 2111 1244678874
No 42
>3kpt_A Collagen adhesion protein; intramolecular amide bond, pilin subunit, beta sheet; 2.10A {Bacillus cereus atcc 14579} PDB: 3rkp_A
Probab=71.19 E-value=12 Score=30.88 Aligned_cols=73 Identities=14% Similarity=0.165 Sum_probs=44.3
Q ss_pred ceEEEEEEE----ECC-CCCeeeeEEEEeccCCC-eee------ceEecCCceEEEE-ecCCCcEEEEEE---ec-----
Q psy4833 7 RVAVVRGQV----LSV-QGLGITGIRVSVDKDSG-RFG------FTLTRGGGWFDML-VNGGGAVTLQFQ---RS----- 65 (141)
Q Consensus 7 r~~~IrG~V----~D~-~GePL~GVsV~Vkgt~~-~~G------~TiTD~DG~FsL~-V~~g~~~tL~FS---yi----- 65 (141)
.+.+.+|.+ +|. +|.+|.||...+....+ .+. ...||.||.|.+. ++.|....-+.. |+
T Consensus 245 ~v~~~tg~i~i~K~d~~~~~~L~GA~F~l~~~~g~~~~~~~~~~~~~td~~G~~~~~~L~~G~Y~l~E~~aP~~~~~~~~ 324 (355)
T 3kpt_A 245 VVIPTTGIIELTKIDSANKNKMKGAEFVLKDNNGKIVVVAGKEVTGVSDENGVIKWSNIPYGDYQIFETKAPTYTKEDGT 324 (355)
T ss_dssp EEEECEEEEEEEEEETTTCCBCSCCEEEEEETTSCBCBSSSSBCEEECCTTSEEEEEEEESSEEEEEEEECCEEECTTCC
T ss_pred eeeecccceEEEEEeCCCCcccCCCEEEEEeCCCCEEEeccceEEEEECCCCeEEECcCCCceEEEEEEECCCCcccccc
Confidence 344566655 464 59999999999864321 111 2468999999997 565653223332 22
Q ss_pred --Ccc--ceEEEEEccCc
Q psy4833 66 --PYR--PQTRTVFIPWN 79 (141)
Q Consensus 66 --GY~--sqe~~V~~~~n 79 (141)
||. ...+.+.+..+
T Consensus 325 ~~GY~~~~~~~~~~i~~~ 342 (355)
T 3kpt_A 325 KTSYQLLKDPIDVKISEN 342 (355)
T ss_dssp EEECCCCCSCEEEECBTT
T ss_pred cCCcccCCCcEEEEEccC
Confidence 776 34556666543
No 43
>1oo2_A Transthyretin; retinol-binding protein, tetramer, transport protein; 1.56A {Sparus aurata} SCOP: b.3.4.1 PDB: 1sn2_A 1sn0_A 1sn5_A*
Probab=70.57 E-value=3.1 Score=30.46 Aligned_cols=53 Identities=15% Similarity=0.298 Sum_probs=35.7
Q ss_pred EEEEEECC-CCCeeeeEEEEeccC---C--CeeeceEecCCceEEEEec----CCCcEEEEEE
Q psy4833 11 VRGQVLSV-QGLGITGIRVSVDKD---S--GRFGFTLTRGGGWFDMLVN----GGGAVTLQFQ 63 (141)
Q Consensus 11 IrG~V~D~-~GePL~GVsV~Vkgt---~--~~~G~TiTD~DG~FsL~V~----~g~~~tL~FS 63 (141)
|+=.|+|. .|.|-+|+.|.+-.. . ..++...||+||+..-..+ ..+...|+|-
T Consensus 4 lstHVLDt~~G~PAagv~V~L~~~~~~~~~~~l~~~~Tn~DGR~~~l~~~~~~~~G~Y~l~F~ 66 (119)
T 1oo2_A 4 LMVKILDAVKGTPAGSVALKVSQKTADGGWTQIATGVTDATGEIHNLITEQQFPAGVYRVEFD 66 (119)
T ss_dssp EEEEEEETTTTEECTTCEEEEEEECTTSCEEEEEEEECCTTSCCTTCSCGGGCCSEEEEEEEC
T ss_pred eeEEEecCCCcCCCCCCEEEEEEeCCCCCcEEEEEEecCCCCcccCcCCCCCCCceEEEEEEE
Confidence 56679995 799999999999421 1 1345689999999842111 1245678774
No 44
>2x5p_A FBA2, fibronectin binding protein; protein binding; 1.60A {Streptococcus pyogenes}
Probab=70.47 E-value=14 Score=26.58 Aligned_cols=53 Identities=17% Similarity=0.232 Sum_probs=29.8
Q ss_pred CcCCcceEEEEEEEECCCCCeeeeEEEEeccCCC-eeeceEecCCceEEEE-ecCCC
Q psy4833 2 TDDELRVAVVRGQVLSVQGLGITGIRVSVDKDSG-RFGFTLTRGGGWFDML-VNGGG 56 (141)
Q Consensus 2 ~~d~~r~~~IrG~V~D~~GePL~GVsV~Vkgt~~-~~G~TiTD~DG~FsL~-V~~g~ 56 (141)
++++...-.|+=.=+|.+|++|+||...+....+ ... +.+ .||.+.+. ++.|.
T Consensus 21 ti~~~~~~~v~i~K~D~~g~~L~GA~F~l~~~~g~~v~-~~~-sdG~~~~~~L~~G~ 75 (121)
T 2x5p_A 21 TIEEDSATHIKFSKRDIDGKELAGATMELRDSSGKTIS-TWI-SDGQVKDFYLMPGK 75 (121)
T ss_dssp ----CCCEEEEEEEECTTCCBCCCCEEEEECTTSCEEE-EEE-CCSSCEEEEECSEE
T ss_pred EEecCCcEEEEEEEECCCCCCcCCCEEEEEECCCCEEE-EEE-eCCEEEEcccCCcE
Confidence 3444445555554478889999999999975431 112 222 36777764 44443
No 45
>3tkv_A FDEC fragment B, attaching and effacing protein, pathogenesis FACT; invasin, intimin, adhesion vaccination, bacterial immunoglob domain; 1.90A {Escherichia coli} PDB: 4e9l_A
Probab=69.97 E-value=5.3 Score=33.83 Aligned_cols=46 Identities=17% Similarity=0.187 Sum_probs=35.1
Q ss_pred eEEEEEEEECCCCCeeeeEEEEeccCCC---------eeeceEecCCceEEEEec
Q psy4833 8 VAVVRGQVLSVQGLGITGIRVSVDKDSG---------RFGFTLTRGGGWFDMLVN 53 (141)
Q Consensus 8 ~~~IrG~V~D~~GePL~GVsV~Vkgt~~---------~~G~TiTD~DG~FsL~V~ 53 (141)
..+++=+|.|.+|.||+|..|.+.-..+ ..+...||.||.|...+.
T Consensus 313 ~~~vt~tv~D~~GNpv~g~~V~f~~~~g~~~~~~~~~t~~~~tt~~~G~~~~tlt 367 (414)
T 3tkv_A 313 TTELTFTMKDAYGNPVTGLKPDAPVFSGAASTGSERPSAGNWTEKGNGVYVSTLT 367 (414)
T ss_dssp EEEEEEECBBTTSCBCCSCCCCCCEEESGGGCSSSCCEECCCEEEETTEEEEEEE
T ss_pred eEEEEEEEEeCCCCCCCCcEEEEEecccceeeccCCCccceeEECCCCEEEEEEE
Confidence 4678889999999999999987652110 113467889999999987
No 46
>4eiu_A Uncharacterized hypothetical protein; PF12866 family protein, DUF3823, structural genomics, joint for structural genomics, JCSG; HET: PGE; 1.90A {Bacteroides uniformis}
Probab=68.28 E-value=26 Score=28.75 Aligned_cols=58 Identities=21% Similarity=0.288 Sum_probs=33.6
Q ss_pred CcCCcceEEEEEEEECC-CCCeee------eEEEEeccCCCeee-------ceEecCCceEE-EEecCCCcEEEEEE
Q psy4833 2 TDDELRVAVVRGQVLSV-QGLGIT------GIRVSVDKDSGRFG-------FTLTRGGGWFD-MLVNGGGAVTLQFQ 63 (141)
Q Consensus 2 ~~d~~r~~~IrG~V~D~-~GePL~------GVsV~Vkgt~~~~G-------~TiTD~DG~Fs-L~V~~g~~~tL~FS 63 (141)
||| +-..+++|+|+|. +|||+. |+.|++-... +| ..-...||.|+ -.+=.|. ..|.+.
T Consensus 4 NYD-eP~s~l~G~ivd~~tGE~i~~~~g~~gv~i~l~E~g--~~~~~~~~~~~~v~~DGtf~Nt~lF~G~-Yki~~~ 76 (249)
T 4eiu_A 4 NYE-EPSETIWGEVVDEATGKRVLTDQGSEGIRVRLTELS--WGDNVQHNPDFYCMMDGTFQNTKIFKGE-YNVRID 76 (249)
T ss_dssp -----CCEEEEEEEEETTTCCBCCCCSSTTSCEEEEEECC--SSCCBCCSCCEECCTTSEEEEEEECSEE-EEEEEE
T ss_pred CCC-CCcceeEEEEEECCCCCEeeeccCCCceEEEEEecc--cccCCCccCCEEECCCCceeeeeEEcce-eEEEeC
Confidence 344 3457899999995 899985 5788775332 11 12445688888 4443333 344444
No 47
>3prx_B Cobra venom factor; immune system, complement, immune SYS complex; HET: NAG; 4.30A {Naja kaouthia} PDB: 3pvm_B*
Probab=66.10 E-value=15 Score=36.79 Aligned_cols=59 Identities=10% Similarity=0.000 Sum_probs=42.9
Q ss_pred CCcceEEEEEEEECCCCCeeeeEEEEeccCCCeeeceEecCCceEEEEec--C-CCcEEEEEEec
Q psy4833 4 DELRVAVVRGQVLSVQGLGITGIRVSVDKDSGRFGFTLTRGGGWFDMLVN--G-GGAVTLQFQRS 65 (141)
Q Consensus 4 d~~r~~~IrG~V~D~~GePL~GVsV~Vkgt~~~~G~TiTD~DG~FsL~V~--~-g~~~tL~FSyi 65 (141)
-|.....++=+|+|.+|.|++++.|.+.... . . ..||.||.-.+.++ . ...+.|.+++.
T Consensus 355 kpG~p~~~~v~v~~~dg~P~~~~~V~v~~~~-~-~-~tTd~~G~a~f~i~t~~~~~~l~i~~~~~ 416 (1642)
T 3prx_B 355 KPGMPYELTVYVTNPDGSPAAHVPVVSEAFH-S-M-GTTLSDGTAKLILNIPLNAQSLPITVRTN 416 (1642)
T ss_dssp CTTSCEEEEEEEECTTSCBCCSCEEEEGGGT-E-E-EECCTTSEEEEEECCCTTCCCCEEEEECC
T ss_pred CCCCCEEEEEEEECCCCCCCCCceEEEEecc-c-e-eeeCCCceEEEEEECCCCCcEEEEEEEEc
Confidence 3555666777889999999999999997554 2 3 67999998777764 2 24456777764
No 48
>3hn5_A Putative exported protein BF0290; YP_210027.1, structural genomics, joint center for S genomics, JCSG; HET: MSE; 1.70A {Bacteroides fragilis nctc 9343}
Probab=65.24 E-value=15 Score=29.47 Aligned_cols=85 Identities=13% Similarity=0.130 Sum_probs=43.4
Q ss_pred CcCCcceEEEEEEEECCCCCeee-----eEEEEeccCCC----eeeceEecCCceEEEEecCCCcEEEEEE-----ec--
Q psy4833 2 TDDELRVAVVRGQVLSVQGLGIT-----GIRVSVDKDSG----RFGFTLTRGGGWFDMLVNGGGAVTLQFQ-----RS-- 65 (141)
Q Consensus 2 ~~d~~r~~~IrG~V~D~~GePL~-----GVsV~Vkgt~~----~~G~TiTD~DG~FsL~V~~g~~~tL~FS-----yi-- 65 (141)
||| +-.+.++|+|+ .+||||. |+.|++-...- ... .-...||.|+-.+=.|. ..|.+. |+
T Consensus 5 NYD-eP~a~l~G~iv-~tGE~i~~~~~~gv~i~l~E~gy~~~~~~~-~~v~qDGtf~~~lF~G~-Yki~~~~gnGPf~~~ 80 (215)
T 3hn5_A 5 NYD-APESMLTGRVM-YNGEALQLRGNEAVQLQLYQHGYAKHDPIN-VYVNQDGMYSANLFDGE-YQMITKSGNGPWTSE 80 (215)
T ss_dssp ------CEEEEEEEE-ETTEECCCCCTTSCEEEEESSCGGGCCCEE-EEBCTTSEEEEEECSEE-EEEEECTTCSSBCST
T ss_pred CCC-CCCceEEEEEE-ECCCEeeecCCCceEEEEEEcccCCCCCee-EEEcCCCcEEEEEECce-eEEEEecCCCCcccC
Confidence 344 44678999999 6788885 57777743320 011 33455888883333443 345543 34
Q ss_pred CccceEEEEEccCccEEEeCCeEEE
Q psy4833 66 PYRPQTRTVFIPWNQIVVLPPVKMQ 90 (141)
Q Consensus 66 GY~sqe~~V~~~~n~~~~~~~v~m~ 90 (141)
+..++++.|.-....-+.+.+-.|+
T Consensus 81 ~~dti~v~i~G~t~~DfeVtPYl~I 105 (215)
T 3hn5_A 81 GRDTINVTVAGNTVQDVEVTPYYLV 105 (215)
T ss_dssp TCCCEEEEESSSEECCEECCBSEEE
T ss_pred CCCeEEEEECCCeEEeEEEeeeEEE
Confidence 5555666554333333333333343
No 49
>2pz4_A Protein GBS052; SPAB, GRAM-positive pilins, adhesions, IGG-like domain, cell adhesion; 1.80A {Streptococcus agalactiae} PDB: 3phs_A
Probab=64.94 E-value=5.4 Score=31.08 Aligned_cols=42 Identities=14% Similarity=0.029 Sum_probs=29.1
Q ss_pred ECCCCCeeeeEEEEeccCCC-----------------------eeeceEecCCceEEEE-ecCCCc
Q psy4833 16 LSVQGLGITGIRVSVDKDSG-----------------------RFGFTLTRGGGWFDML-VNGGGA 57 (141)
Q Consensus 16 ~D~~GePL~GVsV~Vkgt~~-----------------------~~G~TiTD~DG~FsL~-V~~g~~ 57 (141)
.+++|.||.||...+....+ ..+...||.||.+.+. ++.|..
T Consensus 25 ~~~~g~~L~Ga~F~l~~~~~~~~~~~~~~w~~~~~~~l~~~~~~~~~~tTd~~G~~~~~~L~~G~Y 90 (239)
T 2pz4_A 25 APKEGTPIEGVLYQLYQLKSTEDGDLLAHWNSLTITELKKQAQQVFEATTNQQGKATFNQLPDGIY 90 (239)
T ss_dssp CCSSCEECSSCEEEEEEESCCCCTTHHHHHHTSCHHHHHHHEEEEEEEECCTTSEEEEEEEESEEE
T ss_pred cCCCCCCcCCcEEEEEEecCcccccccchhhhhchhhhhccCCceeEEEECCCCeEEECCCCCeeE
Confidence 46789999999988854210 0122579999999986 665643
No 50
>3cu7_A Complement C5; Mg domain, inflammation, anaphylatoxin, cleavage of basic residues, complement alternate pathway, glycoprotein, immune response; HET: NAG; 3.10A {Homo sapiens} PDB: 3kls_A* 3km9_A* 4e0s_A* 3prx_A* 3pvm_A* 4a5w_A* 1xwe_A
Probab=64.26 E-value=8.3 Score=37.95 Aligned_cols=61 Identities=11% Similarity=0.051 Sum_probs=39.5
Q ss_pred cCCcceEEEEEEEECCCCCeeeeEEEEeccCCCe-----------eeceEecCCc--eEEEEecCCC-cEEEEEEe
Q psy4833 3 DDELRVAVVRGQVLSVQGLGITGIRVSVDKDSGR-----------FGFTLTRGGG--WFDMLVNGGG-AVTLQFQR 64 (141)
Q Consensus 3 ~d~~r~~~IrG~V~D~~GePL~GVsV~Vkgt~~~-----------~G~TiTD~DG--~FsL~V~~g~-~~tL~FSy 64 (141)
|.+.....++=+++|.+|.|++|+.|.+.... . .....||++| .|+|..+.+. .+.|++.+
T Consensus 363 ~k~g~p~~~~v~~~~~dG~p~~~~~v~l~~~~-~~~~~~~~~~~~~~~~~t~~~G~~~~~~~~~~~~~~~~l~v~~ 437 (1676)
T 3cu7_A 363 LKPGIPYPIKVQVKDSLDQLVGGVPVTLNAQT-IDVNQETSDLDPSKSVTRVDDGVASFVLNLPSGVTVLEFNVKT 437 (1676)
T ss_dssp ECSSSCEEEEEEEEETTCCBCCSCEEEEEEEE-EETTSCEEECCCEEEECCSSSCEEEEEECCCTTEEEEEEEEEE
T ss_pred ccCCCcEEEEEEEEcCCCCccCcceEEEeccc-cccccccccccccceeEECCCCeEEEEEECCCCCeEEEEEEEE
Confidence 34555667777889999999999999886432 1 0125678899 5555555442 33456554
No 51
>4acq_A Alpha-2-macroglobulin; hydrolase inhibitor, proteinase inhibitor, irreversible PROT inhibitor, conformational change, blood plasma inhibitor; HET: MEQ NAG MAN; 4.30A {Homo sapiens}
Probab=63.18 E-value=14 Score=36.17 Aligned_cols=63 Identities=11% Similarity=0.131 Sum_probs=41.6
Q ss_pred cCCcceEEEEEEEECCCCCeeeeEEEEeccCCCe-eeceEecCCceEEEEecC----CCcEEEEEEec
Q psy4833 3 DDELRVAVVRGQVLSVQGLGITGIRVSVDKDSGR-FGFTLTRGGGWFDMLVNG----GGAVTLQFQRS 65 (141)
Q Consensus 3 ~d~~r~~~IrG~V~D~~GePL~GVsV~Vkgt~~~-~G~TiTD~DG~FsL~V~~----g~~~tL~FSyi 65 (141)
|-|.-...++=+|+|.+|.|++++.|.+.-.... .....||.||...+.++. ...+.|+++|.
T Consensus 336 fkPG~pf~~~v~v~~~dg~P~~~~~v~v~~~~~~~~~~~~t~~~G~a~f~i~~~~~~~~~l~i~~~~~ 403 (1451)
T 4acq_A 336 FRQGIPFFGQVRLVDGKGVPIPNKVIFIRGNEANYYSNATTDEHGLVQFSINTTNVMGTSLTVRVNYK 403 (1451)
T ss_dssp ECSSSCCEEEEEEECTTSCBCCSCBCEEEETTTCCCCCCBCCTTSEEEEECCCCSSSCEEEEEESCCC
T ss_pred ccCCCcEEEEEEEEcCCCCcCCCceEEEEecccceeeeeEeCCCCcEEEEEeCCCCCCcEEEEEEEEe
Confidence 4455666777789999999999998887643100 012568999988887652 23345655544
No 52
>2pz4_A Protein GBS052; SPAB, GRAM-positive pilins, adhesions, IGG-like domain, cell adhesion; 1.80A {Streptococcus agalactiae} PDB: 3phs_A
Probab=62.70 E-value=26 Score=27.12 Aligned_cols=61 Identities=18% Similarity=0.210 Sum_probs=39.4
Q ss_pred CeeeeEEEEeccCCCe-e---------------eceEecCCceEEEE-ecCCCcEEEEEEe-cCccc--eEEEEEccCcc
Q psy4833 21 LGITGIRVSVDKDSGR-F---------------GFTLTRGGGWFDML-VNGGGAVTLQFQR-SPYRP--QTRTVFIPWNQ 80 (141)
Q Consensus 21 ePL~GVsV~Vkgt~~~-~---------------G~TiTD~DG~FsL~-V~~g~~~tL~FSy-iGY~s--qe~~V~~~~n~ 80 (141)
.+|.||...+....+. . ....||.||.|.+. ++.|.....+..- -||.. ..+.+.+..+.
T Consensus 141 ~~L~GA~F~l~~~~g~~~~~~~~g~~~~~~~~~~~~~Td~~G~~~~~~L~~G~Y~l~EtkAP~GY~l~~~~~~f~i~~~~ 220 (239)
T 2pz4_A 141 KPLAGVVFELYEKNGRTPIRVKNGVHSQDIDAAKHLETDSSGHIRISGLIHGDYVLKEIETQSGYQIGQAETAVTIEKSK 220 (239)
T ss_dssp EECCSCEEEEEETTCSSCBCEETTEECCSTTCBSCEECCTTSEEEEEEEESEEEEEEEEECCTTBCCCCSEEEEEECTTS
T ss_pred cccCCCEEEEEeCCCCEEEeecccceecccccceEEEECCCCeEEECCCCCceEEEEEEECCCCcCcCCccEEEEEeCCC
Confidence 8999999998542211 0 23679999999986 5656543344443 58863 34677777666
Q ss_pred E
Q psy4833 81 I 81 (141)
Q Consensus 81 ~ 81 (141)
.
T Consensus 221 ~ 221 (239)
T 2pz4_A 221 T 221 (239)
T ss_dssp E
T ss_pred e
Confidence 3
No 53
>1xpn_A Hypothetical protein PA1324; B-barrel, structural genomics, northeast structural genomics consortium, NESG, protein structure initiative; NMR {Pseudomonas aeruginosa} SCOP: b.3.7.1
Probab=53.14 E-value=17 Score=28.08 Aligned_cols=19 Identities=26% Similarity=0.303 Sum_probs=15.7
Q ss_pred ceEecCCceEEEE-ecCCCc
Q psy4833 39 FTLTRGGGWFDML-VNGGGA 57 (141)
Q Consensus 39 ~TiTD~DG~FsL~-V~~g~~ 57 (141)
.|++|.+|+|.+. ++.|..
T Consensus 110 ~t~~D~~G~F~F~~Lp~G~Y 129 (170)
T 1xpn_A 110 EATTDQNGRFDFDHIPNGTY 129 (170)
T ss_dssp EEEECSSCEEEECSCCSEEE
T ss_pred EEEecCCCcEEecCCCCccE
Confidence 3899999999997 776754
No 54
>2b39_A C3; thioester, immune defense, immune system; HET: NAG BMA; 3.00A {Bos taurus}
Probab=52.28 E-value=7.8 Score=38.16 Aligned_cols=57 Identities=14% Similarity=0.101 Sum_probs=35.8
Q ss_pred CcceEEEEEEEECCCCCeeeeEEEEeccCCCeeeceEecCCc--eEEEEecC-CCcEEEEEEe
Q psy4833 5 ELRVAVVRGQVLSVQGLGITGIRVSVDKDSGRFGFTLTRGGG--WFDMLVNG-GGAVTLQFQR 64 (141)
Q Consensus 5 ~~r~~~IrG~V~D~~GePL~GVsV~Vkgt~~~~G~TiTD~DG--~FsL~V~~-g~~~tL~FSy 64 (141)
+.....+.=+++|.+|.|++|+.|.+.... +- ..||.+| .|+|..+. .+.+.|++.+
T Consensus 365 ~g~~~~~~v~~~~~dG~p~~~~~v~v~~~~--~~-~~t~~~G~~~~~i~~~~~~g~y~l~v~~ 424 (1661)
T 2b39_A 365 PAMPFDLMVYVTNPDGSPARHIPVVTQGSN--VQ-SLTQDDGVAKLSINTQNKRDPLTITVRT 424 (1661)
T ss_dssp SSEEEECCBBCBBTTTBCCSSCCEEETTCC--CC-CCCSSSCBCCCEEEECSCCSCEEEEEEE
T ss_pred CCCcEEEEEEEEcCCCCCcCCceEEEeccc--eE-EEECCCCeEEEEEECCCCCcEEEEEEEE
Confidence 333444444678999999999999987543 22 4567777 56666543 2344555544
No 55
>3rfz_B Outer membrane usher protein, type 1 fimbrial SYN; beta-barrel, pilus assembly, outer-membrane, cell adhesion-T protein-chaperone complex; 2.80A {Escherichia coli} PDB: 3ohn_A 1zdv_A
Probab=51.73 E-value=14 Score=34.47 Aligned_cols=57 Identities=9% Similarity=0.019 Sum_probs=39.1
Q ss_pred CcCCcceEEEEEEEECCCCCeee-eEEEEeccCCCeeeceEecCCceEEEE-ecCCCcEEEEEEe
Q psy4833 2 TDDELRVAVVRGQVLSVQGLGIT-GIRVSVDKDSGRFGFTLTRGGGWFDML-VNGGGAVTLQFQR 64 (141)
Q Consensus 2 ~~d~~r~~~IrG~V~D~~GePL~-GVsV~Vkgt~~~~G~TiTD~DG~FsL~-V~~g~~~tL~FSy 64 (141)
.|+-.+...+-.++.++ |+||| |+.|.-.+.. . . .+...+|.+-|. ++..+ +|.+..
T Consensus 744 ~F~~~~g~~~l~~l~~~-G~~lPfGa~V~~~~~~-~-~-giVg~~G~vyl~gl~~~~--~L~V~w 802 (843)
T 3rfz_B 744 EFKARVGIKLLMTLTHN-NKPLPFGAMVTSESSQ-S-S-GIVADNGQVYLSGMPLAG--KVQVKW 802 (843)
T ss_dssp ECCEEESEEEEEEEEET-TEECCTTCEEEESSSS-C-E-EECCGGGEEEEEEECSEE--EEEEES
T ss_pred EEEEEeeEEEEEEEeeC-CCCCCCceEEEcCCCc-E-E-EEEcCCCEEEEEcCCCCc--EEEEEE
Confidence 35555666677789999 99999 9998754333 2 2 688889999886 44333 355544
No 56
>2x9x_A RRGB, cell WALL surface anchor family protein; cell adhesion; 1.50A {Streptococcus pneumoniae} PDB: 2x9w_A 2x9y_A
Probab=40.14 E-value=65 Score=27.60 Aligned_cols=25 Identities=12% Similarity=0.121 Sum_probs=18.7
Q ss_pred EEEEEEE----ECCCCCeeeeEEEEeccC
Q psy4833 9 AVVRGQV----LSVQGLGITGIRVSVDKD 33 (141)
Q Consensus 9 ~~IrG~V----~D~~GePL~GVsV~Vkgt 33 (141)
.+++|.| +|.+|.||+||.-.+...
T Consensus 260 ~v~~g~v~~~KvD~~~~~L~GA~F~l~~~ 288 (444)
T 2x9x_A 260 KVVTYGKKFVKVNDKDNRLAGAEFVIANA 288 (444)
T ss_dssp EEECEEEEEEEECTTCCBCSCCEEEEESS
T ss_pred eEEeeeEEEEEECCCCCCcCCcEEEEEec
Confidence 4456644 688889999999988643
No 57
>3qec_A Putative carbohydrate binding protein; suramin binding, heparin binding, possible carbohydrate TRAN biofilm formation; HET: PGE; 2.61A {Pseudomonas aeruginosa}
Probab=39.82 E-value=17 Score=27.40 Aligned_cols=19 Identities=26% Similarity=0.303 Sum_probs=15.8
Q ss_pred ceEecCCceEEEE-ecCCCc
Q psy4833 39 FTLTRGGGWFDML-VNGGGA 57 (141)
Q Consensus 39 ~TiTD~DG~FsL~-V~~g~~ 57 (141)
.|++|.+|+|.+. ++.|..
T Consensus 90 ~t~cD~~G~F~F~~Lp~G~Y 109 (150)
T 3qec_A 90 EATTDQNGRFDFDHIPNGTY 109 (150)
T ss_dssp EEECCTTSEEEEEEECSEEE
T ss_pred EEEeCCCCcEEECCCCCccE
Confidence 3899999999996 777764
No 58
>3mkv_A Putative amidohydrolase; sargasso SEA, structural genomics, protein structure initiat NEW YORK structural genomix research consortium, nysgxrc; HET: KCX; 2.40A {Undefined}
Probab=39.58 E-value=81 Score=22.77 Aligned_cols=26 Identities=15% Similarity=0.317 Sum_probs=20.4
Q ss_pred eEEEE-EEEECC-CCCeeeeEEEEeccC
Q psy4833 8 VAVVR-GQVLSV-QGLGITGIRVSVDKD 33 (141)
Q Consensus 8 ~~~Ir-G~V~D~-~GePL~GVsV~Vkgt 33 (141)
..+|+ |+|+|. .|+++.++.|.|++.
T Consensus 5 ~lli~ng~i~d~~~~~~~~~~dV~I~~G 32 (426)
T 3mkv_A 5 TFLFRNGALLDPDHPDLLQGFEILIEDG 32 (426)
T ss_dssp EEEEEEEEECCTTSSSCEEEEEEEEETT
T ss_pred cEEEECeEEEeCCCCcEecCcEEEEECC
Confidence 45666 599996 578999999999865
No 59
>2xet_A CAF1A usher, F1 capsule-anchoring protein; transport protein; 1.60A {Yersinia pestis}
Probab=36.83 E-value=30 Score=22.92 Aligned_cols=35 Identities=9% Similarity=0.005 Sum_probs=20.3
Q ss_pred EEECCCCCeee-eEEE-EeccCCCeeeceEecCCceEEEE
Q psy4833 14 QVLSVQGLGIT-GIRV-SVDKDSGRFGFTLTRGGGWFDML 51 (141)
Q Consensus 14 ~V~D~~GePL~-GVsV-~Vkgt~~~~G~TiTD~DG~FsL~ 51 (141)
++.+.+|+||| |+.| .-.+.. . -.+...+|.--|.
T Consensus 7 ~l~~~dG~~lPfGa~V~~~~~g~-~--~giVg~~G~vyl~ 43 (89)
T 2xet_A 7 HLKRSDNKPVPFGSIVTIEGQSS-S--SGIVGDNSGVYLT 43 (89)
T ss_dssp EEEETTSCBCCTTCEEEETTCCS-C--CEECCTTSEEEEE
T ss_pred EEEcCCCCcCCCccEEEECCCCC-E--EEEEcCCCEEEEE
Confidence 46788999986 6666 432221 1 1455667765554
No 60
>3pdd_A Glycoside hydrolase, family 9; CBHA, beta-sandwich, cellulosome, unknown function; 1.72A {Clostridium thermocellum} PDB: 3pdg_A
Probab=36.36 E-value=1.3e+02 Score=22.35 Aligned_cols=30 Identities=13% Similarity=0.139 Sum_probs=22.8
Q ss_pred CCcceEEEEEEEECCCCCeeeeEEEEeccCC
Q psy4833 4 DELRVAVVRGQVLSVQGLGITGIRVSVDKDS 34 (141)
Q Consensus 4 d~~r~~~IrG~V~D~~GePL~GVsV~Vkgt~ 34 (141)
.....++|++...|.+| .+..|.+.+.|..
T Consensus 106 ~~~~~vtl~~~AsD~~g-~V~~Ve~~~dg~~ 135 (190)
T 3pdd_A 106 YGNEFLKITATASDSDG-KISRVDFLVDGEV 135 (190)
T ss_dssp BTTSEEEEEEEEECSSS-CEEEEEEEETTEE
T ss_pred ecCCeEEEEEEEECCCC-cEEEEEEEECCEE
Confidence 34567889999998877 5888888887643
No 61
>1kmo_A FECA, iron(III) dicitrate transport protein FECA; membrane protein, iron transporter, TONB-dependent receptor, siderophore; HET: LDA HTO; 2.00A {Escherichia coli K12} SCOP: f.4.3.3 PDB: 1kmp_A* 1po0_A* 1pnz_A* 1po3_A* 2d1u_A 1zzv_A
Probab=36.33 E-value=7.5 Score=33.41 Aligned_cols=36 Identities=11% Similarity=0.084 Sum_probs=0.0
Q ss_pred EEEEEEECCCCCeeeeEEEEeccCCCeeeceEecCCceEEEEec
Q psy4833 10 VVRGQVLSVQGLGITGIRVSVDKDSGRFGFTLTRGGGWFDMLVN 53 (141)
Q Consensus 10 ~IrG~V~D~~GePL~GVsV~Vkgt~~~~G~TiTD~DG~FsL~V~ 53 (141)
.++|.+. |++|+++.++|+. . + ++++.+|.|.|.+.
T Consensus 72 ~~~G~~~-----~~~~~~~~l~gt~-~-~-~~~~~~g~~~l~~~ 107 (774)
T 1kmo_A 72 GLHGDYD-----VESGLQQLLDGSG-L-Q-VKPLGNNSWTLEPA 107 (774)
T ss_dssp --------------------------------------------
T ss_pred ceecccC-----HHHHHHHHhcCCC-c-E-EEEcCCCcEEEecC
Confidence 4566554 8899999999998 4 5 88999999999754
No 62
>2pn5_A TEP1R, thioester-containing protein I; FULL-length mature peptide, immune system; HET: NAG; 2.70A {Anopheles gambiae}
Probab=35.99 E-value=1.4e+02 Score=28.48 Aligned_cols=61 Identities=15% Similarity=0.055 Sum_probs=37.2
Q ss_pred cCCcceEEEEEEEECCCCCeeeeEE--EEeccCCCeeeceEecCCceEEEEec--C-CCcEEEEEEe
Q psy4833 3 DDELRVAVVRGQVLSVQGLGITGIR--VSVDKDSGRFGFTLTRGGGWFDMLVN--G-GGAVTLQFQR 64 (141)
Q Consensus 3 ~d~~r~~~IrG~V~D~~GePL~GVs--V~Vkgt~~~~G~TiTD~DG~FsL~V~--~-g~~~tL~FSy 64 (141)
|.+.....+.=+++|.+|.|++|.. |.+.... ......||.||...+.++ . +....|++.+
T Consensus 318 ~~~g~~~~~~v~~~~~dG~p~~~~~~~v~~~~~~-~~~~~~t~~~G~~~~~~~~~~~g~y~~l~v~~ 383 (1325)
T 2pn5_A 318 FRPGLPFKCALQFTHHDGTPAKGISGKVEVSDVR-FETTTTSDNDGLIKLELQPSEGTEQLSIHFNA 383 (1325)
T ss_dssp BCTTSCEEEEEEEECTTSCBCTTCEEEEEEGGGT-EEEEEECCTTSEEEEEECCCTTCCEEEEEEEC
T ss_pred ccCCCCEEEEEEEECCCCCcCCCCceeEEEEEec-ceEEEEeCCCCcEEEEEECCCCCeEEEEEEEE
Confidence 4455566777788999999999865 5443222 112256888997666543 2 3333366553
No 63
>4fxk_A Complement C4 beta chain; immune system, proteolytic cascade; HET: NAG BMA; 3.60A {Homo sapiens} PDB: 4fxg_A*
Probab=33.41 E-value=1e+02 Score=26.31 Aligned_cols=61 Identities=16% Similarity=0.107 Sum_probs=36.0
Q ss_pred CCcceEEEEEEEECCCCCeeeeEEEEeccCCC---------eeeceEecCCceEEEEec---CCCcEEEEEEec
Q psy4833 4 DELRVAVVRGQVLSVQGLGITGIRVSVDKDSG---------RFGFTLTRGGGWFDMLVN---GGGAVTLQFQRS 65 (141)
Q Consensus 4 d~~r~~~IrG~V~D~~GePL~GVsV~Vkgt~~---------~~G~TiTD~DG~FsL~V~---~g~~~tL~FSyi 65 (141)
.+.....++=.++|.+|.|+.|+.|.++-... . ....+|.+|.+.+.+. +.+.+.|.+++-
T Consensus 360 kpg~p~~~~v~v~~~dG~P~~~~~v~v~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~p~~~~~~~~~v~~~ 432 (656)
T 4fxk_A 360 VPGAPFLLQALVREMSGSPASGIPVKVSATVSSPGSVPEVQD-IQQNTDGSGQVSIPIIIPQTISELQLSVSAG 432 (656)
T ss_dssp CTTSBCCEEEEEECSSSSCCCSCCEEEEEEEECGGGCEEEEE-EEECCCTTSEEEECCBCCTTCSEEEEEEEES
T ss_pred cCCCcEEEEEEEECCCCCCCCCceEEEEEEEeccceEEeeeE-EEEEecCCceEEEEEeCCCCCcEEEEEEEeC
Confidence 34445566667899999999998887752210 1 1134566777766542 223344555543
No 64
>3pf2_A Cell WALL surface anchor family protein; pilus shaft component, IGG-DEV fold, IGG-REV fold, CNA A TYP type, IG-like fold; 1.70A {Streptococcus agalactiae serogroup V} PDB: 3pg2_A
Probab=33.32 E-value=44 Score=27.49 Aligned_cols=26 Identities=12% Similarity=0.095 Sum_probs=18.3
Q ss_pred ceEEEEEEE----ECC-CCCeeeeEEEEecc
Q psy4833 7 RVAVVRGQV----LSV-QGLGITGIRVSVDK 32 (141)
Q Consensus 7 r~~~IrG~V----~D~-~GePL~GVsV~Vkg 32 (141)
.+.+.+|.+ +|. ++.+|.||.-.+..
T Consensus 176 ~~~v~tg~~~i~KvD~~~~~~L~GA~F~L~~ 206 (319)
T 3pf2_A 176 KPEVHTGGKRFVKKDSTETQTLGGAEFDLLA 206 (319)
T ss_dssp CCEEECEEEEEEEEETTSCSBCCCCEEEEEE
T ss_pred ceEEEEeeEEEEEeCCCCCcccCCCEEEEEe
Confidence 345666744 465 68999999988843
No 65
>2hbp_A Cytoskeleton assembly control protein SLA1; SHD1, NPFX(1,2)D, endocytosis, protein binding; NMR {Saccharomyces cerevisiae}
Probab=27.53 E-value=23 Score=23.84 Aligned_cols=44 Identities=9% Similarity=-0.004 Sum_probs=31.0
Q ss_pred eEecCCceEEEEecCCCcEEEEEEecCccceEEEEEccCccEEEeCCeEEEecC
Q psy4833 40 TLTRGGGWFDMLVNGGGAVTLQFQRSPYRPQTRTVFIPWNQIVVLPPVKMQLSD 93 (141)
Q Consensus 40 TiTD~DG~FsL~V~~g~~~tL~FSyiGY~sqe~~V~~~~n~~~~~~~v~m~~~d 93 (141)
+=||..|.|++.+ .|+|+..-.+.+.-..+..+-+|--.|...|
T Consensus 7 tWtDrtG~F~VeA----------~flg~~dgki~LhK~nGv~I~VP~~klS~~D 50 (68)
T 2hbp_A 7 LWVDRSGTFKVDA----------EFIGCAKGKIHLHKANGVKIAVAADKLSNED 50 (68)
T ss_dssp EEEBSSSCCEEEE----------EEEEEETTEEEEECTTSCEEEEETTSBCHHH
T ss_pred EEEcCCCCeEEEE----------EEEEEeCCEEEEEecCCcEEEeEhHHcCHHH
Confidence 7789999998874 3466666666666677777777666665554
No 66
>3qdh_A Fimbrial structural subunit; isopeptide bonds, actinomyces type 2 fimbriae, CNAA/DEV-IGG CNAB/IGG-REV fold, cell ahdesion, pilin; 1.90A {Actinomyces naeslundii}
Probab=27.38 E-value=65 Score=26.00 Aligned_cols=46 Identities=15% Similarity=0.194 Sum_probs=26.2
Q ss_pred cceEEEEEEE----ECCCC-----CeeeeEEEEeccCCCe-------------e-----eceEecCCceEEEE
Q psy4833 6 LRVAVVRGQV----LSVQG-----LGITGIRVSVDKDSGR-------------F-----GFTLTRGGGWFDML 51 (141)
Q Consensus 6 ~r~~~IrG~V----~D~~G-----ePL~GVsV~Vkgt~~~-------------~-----G~TiTD~DG~FsL~ 51 (141)
..+.+-.|.+ +|.++ .+|.||.-.+....+. . ....||.||.|.|.
T Consensus 152 ~~v~~~~g~i~i~KvD~~~~~~~~~~L~GA~F~L~~~~~~~~~~~~~~~~g~~i~~~~~~~~tTd~~G~~~~~ 224 (290)
T 3qdh_A 152 NEVTSRWGDLLIKKVDNHQQGQDKAGLQGAQFQLYKAKNAYAGTCTKDKEGDPIAINGETTLTTDAQGAINVK 224 (290)
T ss_dssp CCEEEEEEEEEEEEC----------CCTTCEEEEEEESSTTCSSCCSCEESSCCCBTTBSSEECCTTSEEEEE
T ss_pred CcEEEEEeeEEEEEECCCCCcccCcccCCCEEEEEECCCcccceeeccccCceEecCCceEEEECCCCEEEEe
Confidence 3455556744 46655 8999999887542200 0 12468999999986
No 67
>3mtw_A L-arginine carboxypeptidase CC2672; hydrolase; HET: KCX M3R; 1.70A {Caulobacter vibrioides}
Probab=25.54 E-value=76 Score=22.88 Aligned_cols=26 Identities=19% Similarity=0.208 Sum_probs=20.0
Q ss_pred EEEE-EEEEC-CCCCeeeeEEEEeccCC
Q psy4833 9 AVVR-GQVLS-VQGLGITGIRVSVDKDS 34 (141)
Q Consensus 9 ~~Ir-G~V~D-~~GePL~GVsV~Vkgt~ 34 (141)
..|+ ++|+| .+|+.+....|.|++..
T Consensus 4 ~aI~narviD~~~g~~i~~~~V~I~dG~ 31 (403)
T 3mtw_A 4 KAVSAARLLDVASGKYVDNPLVIVTDGR 31 (403)
T ss_dssp EEEEEEEEEETTTTEEEESEEEEEETTE
T ss_pred EEEEceEEEECCCCcEecCcEEEEECCE
Confidence 3444 59999 57999998999998653
No 68
>2p9r_A Alpha-2-M, alpha-2-macroglobulin; human alpha2-macroglobulin, Mg2 domain, X-RAY, signaling protein; 2.30A {Homo sapiens}
Probab=23.94 E-value=1.5e+02 Score=19.22 Aligned_cols=62 Identities=13% Similarity=0.146 Sum_probs=37.1
Q ss_pred cCCcceEEEEEEEECCCCCeeeeE--EEEeccCCC-eee--ceEecCCceEEEEe--cC---CCcEEEEEEe
Q psy4833 3 DDELRVAVVRGQVLSVQGLGITGI--RVSVDKDSG-RFG--FTLTRGGGWFDMLV--NG---GGAVTLQFQR 64 (141)
Q Consensus 3 ~d~~r~~~IrG~V~D~~GePL~GV--sV~Vkgt~~-~~G--~TiTD~DG~FsL~V--~~---g~~~tL~FSy 64 (141)
|-|...+.+++.++|.+..|+.+- .|.+.+..+ .+. ...++.+|.|+... +. .+..+|++..
T Consensus 13 YrPGetV~~~~~~~~~~~~p~~~~~~~v~l~dp~g~~v~~~~~~~~~~G~~~~~f~Lp~~~~~G~y~i~~~~ 84 (102)
T 2p9r_A 13 YKPGQTVKFRVVSMDENFHPLNELIPLVYIQDPKGNRIAQWQSFQLEGGLKQFSFPLSSEPFQGSYKVVVQK 84 (102)
T ss_dssp ECTTCEEEEEEEEECGGGCBCCCEEEEEEEECTTSCEEEEEEEEECBTTEEEEEEECCSSCCCEEEEEEEEC
T ss_pred cCCCCEEEEEEEEECCCCcCCCCCceEEEEECCCCCEEEEEEeecCCCCEEEEEEECCCCCCCeeEEEEEEE
Confidence 456678889999999888888664 566654331 111 13456677776643 22 2344565544
No 69
>4at0_A 3-ketosteroid-delta4-5alpha-dehydrogenase; oxidoreductase, dehydogenase, steroid catabolism; HET: FAD; 1.60A {Rhodococcus jostii} PDB: 4at2_A*
Probab=23.74 E-value=29 Score=29.09 Aligned_cols=15 Identities=40% Similarity=0.643 Sum_probs=12.8
Q ss_pred EEEEECCCCCeeeeE
Q psy4833 12 RGQVLSVQGLGITGI 26 (141)
Q Consensus 12 rG~V~D~~GePL~GV 26 (141)
.++|+|.+|+||+|-
T Consensus 457 ~~~Vl~~~g~~I~GL 471 (510)
T 4at0_A 457 NSEVLHVSGEPIPGL 471 (510)
T ss_dssp TCEEEBTTSSEEEEE
T ss_pred CCceECCCCCCcCCe
Confidence 468999999999994
No 70
>3bid_A UPF0339 protein NMB1088; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.70A {Neisseria meningitidis MC58} SCOP: d.348.1.1
Probab=22.06 E-value=1.1e+02 Score=19.78 Aligned_cols=29 Identities=10% Similarity=0.152 Sum_probs=19.6
Q ss_pred eEecCCceEEEEec-CCCcEEEEEEecCccce
Q psy4833 40 TLTRGGGWFDMLVN-GGGAVTLQFQRSPYRPQ 70 (141)
Q Consensus 40 TiTD~DG~FsL~V~-~g~~~tL~FSyiGY~sq 70 (141)
.-.|.||.|.+.+. +++. +..|--||.++
T Consensus 5 i~~~~~G~frfrLka~NGe--vI~sSe~Y~sk 34 (64)
T 3bid_A 5 IYKDAKGEYRWRLKAANHE--IIAQGEGYTSK 34 (64)
T ss_dssp EEECTTSCEEEEEECTTSC--EEEECCCBSCH
T ss_pred EEECCCCCEEEEEEeCCCC--EEEECCCcCCH
Confidence 45688998888754 2443 33399999875
No 71
>2y1v_A RRGB, cell WALL surface anchor family protein; structural protein, major pilin, pilus assembly; 2.39A {Streptococcus pneumoniae} PDB: 3rpk_A
Probab=21.88 E-value=2e+02 Score=25.64 Aligned_cols=25 Identities=12% Similarity=0.121 Sum_probs=18.9
Q ss_pred EEEEEEE----ECCCCCeeeeEEEEeccC
Q psy4833 9 AVVRGQV----LSVQGLGITGIRVSVDKD 33 (141)
Q Consensus 9 ~~IrG~V----~D~~GePL~GVsV~Vkgt 33 (141)
.+++|.| +|++|.+|.||.-.+...
T Consensus 415 ~v~tg~v~~~KvD~~~~~L~GA~F~l~~~ 443 (605)
T 2y1v_A 415 KVVTYGKKFVKVNDKDNRLAGAEFVIANA 443 (605)
T ss_dssp EEECEEEEEEEECTTCCBCCCCEEEEESS
T ss_pred eEEeeeEEEEEECCCCCCcCCCEEEEEec
Confidence 4556755 688889999999888543
No 72
>3hr6_A SPAA, putative surface-anchored fimbrial subunit; multiple IG-like domains, cell WALL, peptidoglycan-anchor, structural protein; 1.60A {Corynebacterium diphtheriae} PDB: 3htl_X*
Probab=21.81 E-value=1.1e+02 Score=26.08 Aligned_cols=45 Identities=13% Similarity=-0.084 Sum_probs=29.5
Q ss_pred ceEEEEEEE----ECCC--CCeeeeEEEEeccCCCe--------------eeceEecCCceEEEE
Q psy4833 7 RVAVVRGQV----LSVQ--GLGITGIRVSVDKDSGR--------------FGFTLTRGGGWFDML 51 (141)
Q Consensus 7 r~~~IrG~V----~D~~--GePL~GVsV~Vkgt~~~--------------~G~TiTD~DG~FsL~ 51 (141)
.+.+-.|.+ +|++ +.+|.||.-.+....+. .....||.||.|.|.
T Consensus 301 ~V~~~tG~i~i~Kvd~~d~~~~L~GA~F~L~~~~~~~~~~~~~~~~~~~~~~~~tTd~~G~~~~~ 365 (436)
T 3hr6_A 301 RVSSKFGQITIEKSFDGNTPGADRTATFQLHRCEADGSLVKSDPPISLDGKQEFVTGQDGKAVLS 365 (436)
T ss_dssp CEEEEEEEEEEEEEETTBCCCTTCCCEEEEEEECTTSCBCTTCCCCCBTTBCCEECCTTSEEEEE
T ss_pred cEEEEEeeEEEEEeCCCCCCcccCCCEEEEEECCCCccccccCCceeeccceEEEeCCCcEEEEe
Confidence 455677844 4653 89999999887432200 012478999999885
Done!