RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy4833
         (141 letters)



>d1zq1c2 d.74.4.1 (C:277-407) Glutamyl-tRNA(gln) amidotransferase
           subunit E, GatE, insert domain {Pyrococcus abyssi
           [TaxId: 29292]}
          Length = 131

 Score = 25.3 bits (55), Expect = 1.8
 Identities = 8/29 (27%), Positives = 12/29 (41%)

Query: 87  VKMQLSDASDIFREVASGVTPSYAPKGNS 115
           +K +  D +DIF    S +      KG  
Sbjct: 6   IKEEFYDVTDIFENTKSKIIARVIKKGGK 34


>d1g6ea_ b.11.1.6 (A:) Antifungal protein AFP1 {Streptomyces
          tendae, tu901 [TaxId: 1932]}
          Length = 87

 Score = 24.2 bits (52), Expect = 3.2
 Identities = 12/31 (38%), Positives = 17/31 (54%), Gaps = 3/31 (9%)

Query: 44 GGGWFDMLVNGGGAVTLQFQRSPYRPQTRTV 74
          G  W +   +G   VTLQFQR+   P+  T+
Sbjct: 38 GVNWVE---SGNNVVTLQFQRNLSDPRLETI 65


>d2d6fc2 d.74.4.1 (C:271-395) Glutamyl-tRNA(gln) amidotransferase
           subunit E, GatE, insert domain {Methanobacterium
           thermoautotrophicum [TaxId: 145262]}
          Length = 125

 Score = 24.6 bits (53), Expect = 3.3
 Identities = 5/19 (26%), Positives = 12/19 (63%)

Query: 87  VKMQLSDASDIFREVASGV 105
           V+ ++ D S++F +  S +
Sbjct: 3   VEDKIFDVSEVFADTESRI 21


>d1c0pa2 d.16.1.3 (A:1194-1288) D-aminoacid oxidase {Rhodotorula
          gracilis [TaxId: 5286]}
          Length = 95

 Score = 23.9 bits (51), Expect = 4.9
 Identities = 9/36 (25%), Positives = 14/36 (38%), Gaps = 2/36 (5%)

Query: 11 VRGQVLSVQGLGITGIRVSVDKDSGRFGFTLTRGGG 46
          +RGQ + V+         S D       + + R GG
Sbjct: 4  IRGQTVLVKSPCKRCTMDSSDP--ASPAYIIPRPGG 37


>d2fyta1 c.66.1.6 (A:238-548) Protein arginine N-methyltransferase
           3, PRMT3 {Human (Homo sapiens) [TaxId: 9606]}
          Length = 311

 Score = 24.1 bits (51), Expect = 7.2
 Identities = 10/39 (25%), Positives = 14/39 (35%), Gaps = 5/39 (12%)

Query: 46  GWFDMLVNGGGAVTLQFQRSPYRPQTRTVFIPWNQIVVL 84
           G+FD+         + F   P   +T      W Q V L
Sbjct: 233 GYFDIYFEKNCHNRVVFSTGPQSTKTH-----WKQTVFL 266


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.319    0.136    0.408 

Gapped
Lambda     K      H
   0.267   0.0696    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 511,767
Number of extensions: 21636
Number of successful extensions: 62
Number of sequences better than 10.0: 1
Number of HSP's gapped: 62
Number of HSP's successfully gapped: 20
Length of query: 141
Length of database: 2,407,596
Length adjustment: 77
Effective length of query: 64
Effective length of database: 1,350,386
Effective search space: 86424704
Effective search space used: 86424704
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 48 (22.3 bits)