BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= psy4836
         (69 letters)

Database: swissprot 
           539,616 sequences; 191,569,459 total letters

Searching..................................................done



>sp|Q7Z401|MYCPP_HUMAN C-myc promoter-binding protein OS=Homo sapiens GN=DENND4A PE=1
          SV=2
          Length = 1863

 Score = 53.1 bits (126), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 32/65 (49%), Positives = 37/65 (56%), Gaps = 1/65 (1%)

Query: 5  RVADYFVVCGLPDDQAEWEEETS-EHSHYKSNHNDAPITDLAVIFPTLGEFVPDGYDVIK 63
          RVADYFVV GL D     EEE     + +K      PITD++VI  +LGE VP  Y  I 
Sbjct: 8  RVADYFVVAGLTDVSKPLEEEIHFNDACHKVAKPKEPITDVSVIIKSLGEEVPQDYICID 67

Query: 64 STPTG 68
           TPTG
Sbjct: 68 VTPTG 72


>sp|A6H8H2|DEN4C_MOUSE DENN domain-containing protein 4C OS=Mus musculus GN=Dennd4c PE=1
          SV=1
          Length = 1906

 Score = 52.8 bits (125), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 28/64 (43%), Positives = 39/64 (60%), Gaps = 1/64 (1%)

Query: 5  RVADYFVVCGLPDDQAEWEEETSEHSHYKSNHNDAPITDLAVIFPTLGEFVPDGYDVIKS 64
          RV DYFVV GL D     ++E +  +   S    APITD+AVI  + GE VP+GY  +++
Sbjct: 8  RVTDYFVVAGLTDTSTLLDQEINR-TDTNSIGPKAPITDIAVIIKSAGETVPEGYTCVEA 66

Query: 65 TPTG 68
          TP+ 
Sbjct: 67 TPSA 70


>sp|O75064|DEN4B_HUMAN DENN domain-containing protein 4B OS=Homo sapiens GN=DENND4B PE=1
          SV=4
          Length = 1496

 Score = 45.4 bits (106), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 28/67 (41%), Positives = 35/67 (52%), Gaps = 3/67 (4%)

Query: 5  RVADYFVVCGLPDDQAEWEEET---SEHSHYKSNHNDAPITDLAVIFPTLGEFVPDGYDV 61
          R+ DYFVV GL  + A   EET         +      PITD+AVI   LGE VP GY  
Sbjct: 8  RLVDYFVVAGLAGNGAPIPEETWVPEPSGPLRPPRPAEPITDVAVIARALGEEVPQGYTC 67

Query: 62 IKSTPTG 68
          I+++  G
Sbjct: 68 IQASAGG 74


>sp|Q3U1Y4|DEN4B_MOUSE DENN domain-containing protein 4B OS=Mus musculus GN=Dennd4b PE=2
          SV=2
          Length = 1499

 Score = 43.1 bits (100), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 27/67 (40%), Positives = 34/67 (50%), Gaps = 3/67 (4%)

Query: 5  RVADYFVVCGLPDDQAEWEEET---SEHSHYKSNHNDAPITDLAVIFPTLGEFVPDGYDV 61
          R+ DYFVV GL  + A   EE          +      PITD+AVI   LGE VP GY  
Sbjct: 8  RLVDYFVVAGLAGNGAPIPEEKWVPEPTGPLRPPRPAEPITDVAVIARALGEEVPQGYTC 67

Query: 62 IKSTPTG 68
          I+++  G
Sbjct: 68 IQTSAGG 74


>sp|Q6UY61|L_SABVB RNA-directed RNA polymerase L OS=Sabia virus (isolate
           Human/Brasil/SPH114202/1990) GN=L PE=3 SV=1
          Length = 2212

 Score = 33.1 bits (74), Expect = 0.46,   Method: Composition-based stats.
 Identities = 13/37 (35%), Positives = 23/37 (62%)

Query: 29  HSHYKSNHNDAPITDLAVIFPTLGEFVPDGYDVIKST 65
           H +Y+    D  ++D  ++ PTL + VPDGY+++  T
Sbjct: 65  HHNYEQKFIDVILSDGGILCPTLPKVVPDGYNLMGKT 101


>sp|A0PJ24|L_BCNVU RNA-directed RNA polymerase L OS=Bear canyon virus (isolate
          Mouse/United States/AV A0070039/2000) GN=L PE=3 SV=1
          Length = 2216

 Score = 31.2 bits (69), Expect = 1.8,   Method: Composition-based stats.
 Identities = 15/35 (42%), Positives = 21/35 (60%)

Query: 31 HYKSNHNDAPITDLAVIFPTLGEFVPDGYDVIKST 65
          H K+   +  + D  ++ PTL + VPDGY VI ST
Sbjct: 62 HNKNKTVNQILRDHRIVGPTLPDVVPDGYRVIGST 96


  Database: swissprot
    Posted date:  Mar 23, 2013  2:32 AM
  Number of letters in database: 191,569,459
  Number of sequences in database:  539,616
  
Lambda     K      H
   0.315    0.135    0.419 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 30,288,158
Number of Sequences: 539616
Number of extensions: 1037774
Number of successful extensions: 1582
Number of sequences better than 100.0: 6
Number of HSP's better than 100.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 1571
Number of HSP's gapped (non-prelim): 7
length of query: 69
length of database: 191,569,459
effective HSP length: 41
effective length of query: 28
effective length of database: 169,445,203
effective search space: 4744465684
effective search space used: 4744465684
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 55 (25.8 bits)