Query psy4836
Match_columns 69
No_of_seqs 67 out of 69
Neff 3.6
Searched_HMMs 13730
Date Fri Aug 16 19:00:17 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy4836.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/4836hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1g26a_ g.3.16.1 (A:) N-termin 65.6 0.85 6.2E-05 22.8 0.6 11 54-64 9-19 (31)
2 d2o5aa1 d.218.1.12 (A:2-114) U 65.4 1 7.4E-05 27.1 1.1 10 5-14 31-40 (113)
3 d1hypa_ a.52.1.1 (A:) Soybean 63.6 0.85 6.2E-05 26.7 0.4 20 43-62 54-73 (75)
4 d1g7sa1 b.43.3.1 (A:228-328) I 61.6 2 0.00014 25.9 1.9 53 5-61 32-97 (101)
5 d2id1a1 d.218.1.12 (A:1-120) H 56.3 1.7 0.00013 26.2 1.0 13 5-17 32-44 (120)
6 d1sfra_ c.69.1.3 (A:) Antigen 40.9 5.3 0.00038 24.6 1.4 22 35-56 3-24 (288)
7 d1jz8a1 b.1.4.1 (A:220-333) be 39.7 7.5 0.00055 21.3 1.9 14 5-18 2-15 (114)
8 d2gu3a2 d.17.1.6 (A:34-98) Unc 24.9 10 0.00074 20.9 0.7 15 7-21 31-45 (65)
9 d1pina1 b.72.1.1 (A:6-39) Mito 24.4 28 0.002 16.4 2.3 15 54-68 1-15 (34)
10 d1yf2a1 d.287.1.2 (A:1-220) Bi 23.4 9.8 0.00071 22.4 0.4 11 51-62 13-23 (220)
11 d1jmqa_ b.72.1.1 (A:) Yap65 ww 21.1 17 0.0013 18.5 1.1 16 53-69 7-22 (46)
12 d1rzsa_ a.35.1.2 (A:) cro p22 21.0 9 0.00065 21.2 -0.1 9 50-58 29-37 (61)
No 1
>d1g26a_ g.3.16.1 (A:) N-terminal domain of granulin-1 {Human (Homo sapiens) [TaxId: 9606]}
Probab=65.57 E-value=0.85 Score=22.85 Aligned_cols=11 Identities=36% Similarity=0.824 Sum_probs=8.8
Q ss_pred CCCCceEEeee
Q psy4836 54 FVPDGYDVIKS 64 (69)
Q Consensus 54 ~vP~Gftcie~ 64 (69)
.||+||||--.
T Consensus 9 sCPdg~TCCrl 19 (31)
T d1g26a_ 9 ICPDGYTCCRL 19 (31)
T ss_dssp EECTTEEEEEC
T ss_pred ecCCCCeeEec
Confidence 48999999654
No 2
>d2o5aa1 d.218.1.12 (A:2-114) Uncharacterized protein BH1328 {Bacillus halodurans [TaxId: 86665]}
Probab=65.40 E-value=1 Score=27.10 Aligned_cols=10 Identities=40% Similarity=1.168 Sum_probs=6.9
Q ss_pred eeeeeEEEec
Q psy4836 5 RVADYFVVCG 14 (69)
Q Consensus 5 RvaDYFVVAG 14 (69)
-++||||||-
T Consensus 31 ~~~D~~VIat 40 (113)
T d2o5aa1 31 LIADFFLICH 40 (113)
T ss_dssp C--CEEEEEE
T ss_pred cccCEEEEEE
Confidence 6899999993
No 3
>d1hypa_ a.52.1.1 (A:) Soybean hydrophobic protein {Soybean (Glycine max) [TaxId: 3847]}
Probab=63.64 E-value=0.85 Score=26.68 Aligned_cols=20 Identities=20% Similarity=0.330 Sum_probs=15.1
Q ss_pred eEEEeeccCCCCCCCceEEe
Q psy4836 43 DLAVIFPTLGEFVPDGYDVI 62 (69)
Q Consensus 43 DiaVI~~slGE~vP~Gftci 62 (69)
++.++...=|-++|+||+|=
T Consensus 54 ~l~llln~Cgk~~P~gF~CP 73 (75)
T d1hypa_ 54 NLQLILNSCGRSYPSNATCP 73 (75)
T ss_dssp HHHHHHHHTTCSSCCCCCCS
T ss_pred hHHHHHHHcCCcCcCCCcCC
Confidence 44555556799999999983
No 4
>d1g7sa1 b.43.3.1 (A:228-328) Initiation factor IF2/eIF5b, domains 2 and 4 {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}
Probab=61.65 E-value=2 Score=25.86 Aligned_cols=53 Identities=17% Similarity=0.180 Sum_probs=32.6
Q ss_pred eeeeeEEEecCCCC----------Cccchhh--cccC-ccccCCCCCCCeeeEEEeeccCCCCCCCceEE
Q psy4836 5 RVADYFVVCGLPDD----------QAEWEEE--TSEH-SHYKSNHNDAPITDLAVIFPTLGEFVPDGYDV 61 (69)
Q Consensus 5 RvaDYFVVAGL~~~----------~~~L~e~--~~~~-~~~r~~~~~~PITDiaVI~~slGE~vP~Gftc 61 (69)
++-||||+.+..+. ++||+|- ..+. -+++...+..| |-|+++.| |.+|.|-..
T Consensus 32 k~GD~iv~g~~~G~i~~~iraLl~p~pl~emr~~~~~~~~vke~~aa~g---VkI~a~gL-e~v~aG~~~ 97 (101)
T d1g7sa1 32 RKDDTIAMMTSKDVISTRIRSLLKPRPLEEMRESRKKFQKVDEVVAAAG---IKIVAPGI-DDVMAGSPL 97 (101)
T ss_dssp ETTCEEEEEBSSSEEEEECCEEEEECCCC----CCCSEEECSEEESSEE---EEEECSSC-TTBCTTCEE
T ss_pred ccCCEEEEecCcCCEEEEeecccCCcchhhhhccccCCeECcEEeCCCc---eEEEcCCC-CcCCCCCEE
Confidence 66799999887653 4466553 1222 22445555544 57888988 888888654
No 5
>d2id1a1 d.218.1.12 (A:1-120) Hypothetical protein CV0518 {Chromobacterium violaceum [TaxId: 536]}
Probab=56.35 E-value=1.7 Score=26.25 Aligned_cols=13 Identities=8% Similarity=0.036 Sum_probs=10.1
Q ss_pred eeeeeEEEecCCC
Q psy4836 5 RVADYFVVCGLPD 17 (69)
Q Consensus 5 RvaDYFVVAGL~~ 17 (69)
-++||||||-=.-
T Consensus 32 ~~~D~~VI~Tg~S 44 (120)
T d2id1a1 32 SLFQRMIVATGDS 44 (120)
T ss_dssp SSCSEEEEEECSS
T ss_pred ccccEEEEEEecC
Confidence 6899999996443
No 6
>d1sfra_ c.69.1.3 (A:) Antigen 85a {Mycobacterium tuberculosis [TaxId: 1773]}
Probab=40.91 E-value=5.3 Score=24.61 Aligned_cols=22 Identities=23% Similarity=0.395 Sum_probs=19.3
Q ss_pred CCCCCCeeeEEEeeccCCCCCC
Q psy4836 35 NHNDAPITDLAVIFPTLGEFVP 56 (69)
Q Consensus 35 ~~~~~PITDiaVI~~slGE~vP 56 (69)
++|--||.++.|-.+++|+++|
T Consensus 3 ~~~~~~v~~~~~~s~~~~r~~~ 24 (288)
T d1sfra_ 3 SRPGLPVEYLQVPSPSMGRDIK 24 (288)
T ss_dssp SSTTCCCEEEEEEETTTTEEEE
T ss_pred CCCCCEEEEEEEECCCCCcEEE
Confidence 5667799999999999999985
No 7
>d1jz8a1 b.1.4.1 (A:220-333) beta-Galactosidase, domains 2 and 4 {Escherichia coli [TaxId: 562]}
Probab=39.71 E-value=7.5 Score=21.27 Aligned_cols=14 Identities=29% Similarity=0.665 Sum_probs=12.0
Q ss_pred eeeeeEEEecCCCC
Q psy4836 5 RVADYFVVCGLPDD 18 (69)
Q Consensus 5 RvaDYFVVAGL~~~ 18 (69)
||+||||..-|.++
T Consensus 2 ~I~D~~v~t~l~~~ 15 (114)
T d1jz8a1 2 QISDFHVATRFNDD 15 (114)
T ss_dssp EEEEEEEEEEECTT
T ss_pred eeEEEEEECccCCC
Confidence 79999999988654
No 8
>d2gu3a2 d.17.1.6 (A:34-98) Uncharacterized protein YpmB {Bacillus subtilis [TaxId: 1423]}
Probab=24.88 E-value=10 Score=20.92 Aligned_cols=15 Identities=27% Similarity=0.503 Sum_probs=11.9
Q ss_pred eeeEEEecCCCCCcc
Q psy4836 7 ADYFVVCGLPDDQAE 21 (69)
Q Consensus 7 aDYFVVAGL~~~~~~ 21 (69)
--|+||.|..+...+
T Consensus 31 ~tYyvv~G~n~~ge~ 45 (65)
T d2gu3a2 31 EKYYVVKGTDKKGTA 45 (65)
T ss_dssp SEEEEEEEEETTCCE
T ss_pred eEEEEEEeecCCCCE
Confidence 359999999887753
No 9
>d1pina1 b.72.1.1 (A:6-39) Mitotic rotamase PIN1 {Human (Homo sapiens) [TaxId: 9606]}
Probab=24.42 E-value=28 Score=16.36 Aligned_cols=15 Identities=27% Similarity=0.530 Sum_probs=10.2
Q ss_pred CCCCceEEeeeCCCC
Q psy4836 54 FVPDGYDVIKSTPTG 68 (69)
Q Consensus 54 ~vP~Gftcie~Tp~G 68 (69)
+.|+||+..-.--+|
T Consensus 1 ~LP~GW~~~~d~~~G 15 (34)
T d1pina1 1 KLPPGWEKRMSRSSG 15 (34)
T ss_dssp CCCTTEEEEECTTSC
T ss_pred CcCCCcEEEECCCCC
Confidence 479999886554444
No 10
>d1yf2a1 d.287.1.2 (A:1-220) Bipartite methylase S protein MJ0130 {Methanocaldococcus jannaschii [TaxId: 2190]}
Probab=23.43 E-value=9.8 Score=22.38 Aligned_cols=11 Identities=27% Similarity=1.195 Sum_probs=8.4
Q ss_pred CCCCCCCceEEe
Q psy4836 51 LGEFVPDGYDVI 62 (69)
Q Consensus 51 lGE~vP~Gftci 62 (69)
||| +|+||...
T Consensus 13 lg~-iP~~W~~~ 23 (220)
T d1yf2a1 13 IGE-IPEDWEIV 23 (220)
T ss_dssp SSS-CBSSCCCE
T ss_pred CCc-CCCCCEEE
Confidence 565 99999764
No 11
>d1jmqa_ b.72.1.1 (A:) Yap65 ww domain {Human (Homo sapiens) [TaxId: 9606]}
Probab=21.07 E-value=17 Score=18.49 Aligned_cols=16 Identities=25% Similarity=0.642 Sum_probs=11.4
Q ss_pred CCCCCceEEeeeCCCCC
Q psy4836 53 EFVPDGYDVIKSTPTGT 69 (69)
Q Consensus 53 E~vP~Gftcie~Tp~G~ 69 (69)
+..|.||++... +.|+
T Consensus 7 ~~LP~GWe~~~d-~~G~ 22 (46)
T d1jmqa_ 7 VPLPAGWEMAKT-SSGQ 22 (46)
T ss_dssp CCCCTTBCCBCC-SSCC
T ss_pred CCCCCCceEEEC-CCCC
Confidence 458999998774 5663
No 12
>d1rzsa_ a.35.1.2 (A:) cro p22 {Bacteriophage p22 [TaxId: 10754]}
Probab=21.01 E-value=9 Score=21.25 Aligned_cols=9 Identities=22% Similarity=0.527 Sum_probs=7.3
Q ss_pred cCCCCCCCc
Q psy4836 50 TLGEFVPDG 58 (69)
Q Consensus 50 slGE~vP~G 58 (69)
.|||.||++
T Consensus 29 qWGe~VPe~ 37 (61)
T d1rzsa_ 29 QWKEVIPEK 37 (61)
T ss_dssp HCCSBCCHH
T ss_pred HHhccCcHH
Confidence 479999975
Done!