RPS-BLAST 2.2.26 [Sep-21-2011]

Database: pdb70 
           27,921 sequences; 6,701,793 total letters

Searching..................................................done

Query= psy4836
         (69 letters)



>3tow_A Multivesicular BODY subunit 12B; beta prism, membrane binding
          domain, negatively charged MEMB protein transport;
          1.34A {Homo sapiens}
          Length = 152

 Score = 34.3 bits (78), Expect = 8e-04
 Identities = 11/30 (36%), Positives = 14/30 (46%), Gaps = 2/30 (6%)

Query: 39 APITDLAVIFPTLGEFVPDGYDVIKSTPTG 68
           PIT + V+        P GYDV+  T  G
Sbjct: 2  DPITGVGVV--ASRNRAPTGYDVVAQTADG 29


>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
           acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
           synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
          Length = 2006

 Score = 30.4 bits (68), Expect = 0.029
 Identities = 21/99 (21%), Positives = 26/99 (26%), Gaps = 48/99 (48%)

Query: 7   ADYFVVCGLP------------------DDQAEWEEETSE----------------HSHY 32
           A   VV G P                   DQ+      SE                HSH 
Sbjct: 374 AKNLVVSGPPQSLYGLNLTLRKAKAPSGLDQSR--IPFSERKLKFSNRFLPVASPFHSHL 431

Query: 33  KSNHNDAPITDLA---VIFPT--LGEFVP-----DGYDV 61
               +D    DL    V F    +   +P     DG D+
Sbjct: 432 LVPASDLINKDLVKNNVSFNAKDIQ--IPVYDTFDGSDL 468



 Score = 24.2 bits (52), Expect = 4.0
 Identities = 14/65 (21%), Positives = 21/65 (32%), Gaps = 14/65 (21%)

Query: 10  FVVCGLPDDQAE-WEEETSEH----SH-YKSNHNDA-------PITDLAVIFPTL-GEFV 55
             +  L  +Q + +  +T+ H         S  N A       P   L  +  TL     
Sbjct: 339 LSISNLTQEQVQDYVNKTNSHLPAGKQVEISLVNGAKNLVVSGPPQSLYGLNLTLRKAKA 398

Query: 56  PDGYD 60
           P G D
Sbjct: 399 PSGLD 403


>3jsb_A Protein L, RNA-directed RNA polymerase; viral protein, vizier,
           structural genomics, marseilles struc genomics program @
           AFMB; 2.13A {Lymphocytic choriomeningitis virus}
          Length = 204

 Score = 26.8 bits (59), Expect = 0.47
 Identities = 7/25 (28%), Positives = 15/25 (60%)

Query: 41  ITDLAVIFPTLGEFVPDGYDVIKST 65
           + +  ++ P L   +PDGY +I ++
Sbjct: 80  LVESGIVCPGLPLIIPDGYKLIDNS 104


>1juv_A DHFR, dihydrofolate reductase; complexed with NADPH,
           oxidoreductase; HET: NDP; 1.70A {Enterobacteria phage
           T4} SCOP: c.71.1.1
          Length = 193

 Score = 23.5 bits (51), Expect = 6.1
 Identities = 4/23 (17%), Positives = 7/23 (30%), Gaps = 1/23 (4%)

Query: 16  PDDQAEWEEETSEHSHYKSNHND 38
            DD ++  E    H +       
Sbjct: 165 LDDISKR-EMVETHWYKIDEVTT 186


  Database: pdb70
    Posted date:  Sep 4, 2012  3:40 AM
  Number of letters in database: 6,701,793
  Number of sequences in database:  27,921
  
Lambda     K      H
   0.315    0.135    0.419 

Gapped
Lambda     K      H
   0.267   0.0529    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 1,155,367
Number of extensions: 53014
Number of successful extensions: 115
Number of sequences better than 10.0: 1
Number of HSP's gapped: 115
Number of HSP's successfully gapped: 10
Length of query: 69
Length of database: 6,701,793
Length adjustment: 39
Effective length of query: 30
Effective length of database: 5,612,874
Effective search space: 168386220
Effective search space used: 168386220
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 51 (23.9 bits)