BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= psy4837
         (100 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|1SO9|A Chain A, Solution Structure Of Apocox11, 30 Structures
 pdb|1SP0|A Chain A, Solution Structure Of Apocox11
          Length = 164

 Score = 68.9 bits (167), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 30/61 (49%), Positives = 39/61 (63%)

Query: 11  LHVYPGETALAFYTAKNPTNSPIVGISTYNVVPFDAGQYFNKIQCFCFEEQQLNPHEELQ 70
           + V  GET    Y AKN  ++P  G +T+NV P  AG YFNK+QCFCF E  L P EE++
Sbjct: 56  IDVRIGETVQIMYRAKNLASTPTTGQATFNVTPMAAGAYFNKVQCFCFTETTLEPGEEME 115

Query: 71  I 71
           +
Sbjct: 116 M 116


>pdb|1QWO|A Chain A, Crystal Structure Of A Phosphorylated Phytase From
           Aspergillus Fumigatus, Revealing The Structural Basis
           For Its Heat Resilience And Catalytic Pathway
          Length = 442

 Score = 26.9 bits (58), Expect = 3.1,   Method: Composition-based stats.
 Identities = 16/44 (36%), Positives = 18/44 (40%), Gaps = 7/44 (15%)

Query: 19  ALAFYTAKNPTNSPIV-------GISTYNVVPFDAGQYFNKIQC 55
           AL  Y    P +   V       G S   VVPF A  YF  +QC
Sbjct: 346 ALGLYNGTEPLSRTSVESAKELDGYSASWVVPFGARAYFETMQC 389


>pdb|1SK9|A Chain A, Crystallographic Snapshots Of Aspergillus Fumigatus
           Phytase Revealing Its Enzymatic Dynamics
 pdb|1SKA|A Chain A, Crystallographic Snapshots Of Aspergillus Fumigatus
           Phytase Revealing Its Enzymatic Dynamics
 pdb|1SKB|A Chain A, Crystallographic Snapshots Of Aspergillus Fumigatus
           Phytase Revealing Its Enzymatic Dynamics
 pdb|1SK8|A Chain A, Crystallographic Snapshots Of Aspergillus Fumigatus
           Phytase Revealing Its Enzymatic Dynamics
          Length = 439

 Score = 26.6 bits (57), Expect = 3.5,   Method: Composition-based stats.
 Identities = 16/44 (36%), Positives = 18/44 (40%), Gaps = 7/44 (15%)

Query: 19  ALAFYTAKNPTNSPIV-------GISTYNVVPFDAGQYFNKIQC 55
           AL  Y    P +   V       G S   VVPF A  YF  +QC
Sbjct: 343 ALGLYNGTEPLSRTSVESAKELDGYSASWVVPFGARAYFETMQC 386


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.320    0.134    0.408 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,170,621
Number of Sequences: 62578
Number of extensions: 116326
Number of successful extensions: 196
Number of sequences better than 100.0: 5
Number of HSP's better than 100.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 194
Number of HSP's gapped (non-prelim): 5
length of query: 100
length of database: 14,973,337
effective HSP length: 66
effective length of query: 34
effective length of database: 10,843,189
effective search space: 368668426
effective search space used: 368668426
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 45 (21.9 bits)