Query psy4837
Match_columns 100
No_of_seqs 107 out of 420
Neff 4.0
Searched_HMMs 29240
Date Fri Aug 16 19:01:26 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy4837.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/4837hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1so9_A Cytochrome C oxidase as 100.0 1.5E-42 5.2E-47 257.7 4.2 87 3-89 48-139 (164)
2 2qsv_A Uncharacterized protein 94.5 0.042 1.4E-06 40.0 4.3 50 12-75 130-186 (220)
3 2e6j_A Hydin protein; PAPD, st 87.8 1 3.5E-05 28.5 4.9 58 12-77 21-83 (112)
4 2qsv_A Uncharacterized protein 82.2 1.7 5.9E-05 31.3 4.4 56 13-78 15-73 (220)
5 1suj_A CONE arrestin; sensory 76.0 3.8 0.00013 33.3 5.0 66 13-78 205-277 (392)
6 3ugu_A S-arrestin; arrestin fo 63.2 16 0.00055 29.8 6.1 64 13-78 224-296 (380)
7 3idu_A Uncharacterized protein 62.0 22 0.00074 24.3 5.8 51 12-71 28-78 (127)
8 3hrz_B Cobra venom factor; ser 50.5 33 0.0011 25.3 5.5 32 12-43 91-122 (252)
9 1yew_A Particulate methane mon 49.0 37 0.0013 27.9 5.9 58 14-71 261-330 (382)
10 3rfr_A PMOB; membrane, oxidore 39.8 66 0.0022 26.8 6.1 54 14-71 295-362 (419)
11 3isy_A Bsupi, intracellular pr 39.4 52 0.0018 22.4 4.7 59 15-73 16-87 (120)
12 4djm_A DRAB; chaperone, PILI; 38.3 41 0.0014 25.1 4.3 65 13-83 32-102 (239)
13 2yue_A Protein neuralized; str 36.4 12 0.00042 26.7 1.1 18 54-71 36-53 (168)
14 3imh_A Galactose-1-epimerase; 35.8 27 0.00091 27.2 3.1 45 7-64 260-304 (338)
15 2ys4_A Hydrocephalus-inducing 35.4 87 0.003 20.0 5.7 54 12-76 36-92 (122)
16 2e63_A KIAA1787 protein; struc 34.3 15 0.00053 26.2 1.4 18 54-71 37-54 (170)
17 1b3i_A PETE protein, protein ( 33.5 78 0.0027 18.9 5.9 50 9-71 19-70 (97)
18 1g4m_A Beta-arrestin1; sensory 33.3 53 0.0018 26.2 4.5 65 12-77 207-279 (393)
19 1pcs_A Plastocyanin; electron 31.2 87 0.003 18.7 4.8 52 9-71 19-71 (98)
20 2eyx_A V-CRK sarcoma virus CT1 29.6 43 0.0015 19.3 2.6 36 27-74 1-38 (67)
21 2dv6_A Nitrite reductase; elec 29.6 67 0.0023 24.8 4.4 22 9-32 55-76 (447)
22 2kfw_A FKBP-type peptidyl-prol 29.3 32 0.0011 24.9 2.4 79 11-93 1-83 (196)
23 2p26_A Integrin beta-2; hybrid 29.0 41 0.0014 25.8 3.1 24 3-26 75-98 (280)
24 2x41_A Beta-glucosidase; hydro 26.9 44 0.0015 28.5 3.2 57 16-74 614-676 (721)
25 3zyz_A Beta-D-glucoside glucoh 26.6 61 0.0021 27.8 4.0 51 16-74 612-673 (713)
26 3qbt_B Inositol polyphosphate 26.5 1.5E+02 0.0051 19.9 6.1 57 12-71 38-94 (140)
27 1iby_A Nitrosocyanin; RED copp 25.9 1.2E+02 0.0042 18.7 5.4 45 8-71 37-81 (112)
28 1plc_A Plastocyanin; electron 25.2 1.2E+02 0.004 18.2 4.2 18 9-30 17-34 (99)
29 3t3p_B Integrin beta-3; integr 23.7 95 0.0032 25.8 4.5 40 3-42 82-121 (472)
30 1byp_A Protein (plastocyanin); 23.6 1.1E+02 0.0038 18.3 3.9 18 9-30 17-34 (99)
31 2wtp_A ORF131 protein, CZCE; m 23.6 43 0.0015 23.6 2.1 26 2-29 64-89 (131)
32 2plt_A Plastocyanin; electron 23.4 1.2E+02 0.0043 17.9 4.4 53 9-71 18-71 (98)
33 3ucp_A UNDA; beta-barrel, C-ty 22.3 1.2E+02 0.0041 23.9 4.7 33 3-36 53-85 (874)
34 3cgm_A SLYD, peptidyl-prolyl C 22.2 46 0.0016 23.1 2.1 73 12-91 2-76 (158)
35 1v10_A Laccase; multicopper bl 21.1 2E+02 0.0067 23.1 5.8 61 9-74 212-276 (521)
36 2awg_A 38 kDa FK-506 binding p 20.7 96 0.0033 19.6 3.3 62 12-77 29-91 (118)
37 1hfu_A Laccase 1; oxidoreducta 20.4 2.1E+02 0.0071 22.8 5.8 61 9-74 185-249 (503)
38 3v4v_B Integrin beta-7; cell a 20.3 1.1E+02 0.0037 25.8 4.2 40 3-42 103-142 (503)
No 1
>1so9_A Cytochrome C oxidase assembly protein CTAG; immunoglobulin-like fold, copper protein, structural proteomics in europe, spine; NMR {Sinorhizobium meliloti} SCOP: b.146.1.1 PDB: 1sp0_A
Probab=100.00 E-value=1.5e-42 Score=257.69 Aligned_cols=87 Identities=37% Similarity=0.625 Sum_probs=84.8
Q ss_pred eeceeceEEEeecCCeEEEEEEEECCCCCcEEEEEeCcccccchhhcccceeeeeccccccCCCCeeec-----cCCCCC
Q psy4837 3 TTHRYLLTLHVYPGETALAFYTAKNPTNSPIVGISTYNVVPFDAGQYFNKIQCFCFEEQQLNPHEELQI-----FAPKKP 77 (100)
Q Consensus 3 ~~~p~q~~v~V~pGE~~~v~y~a~N~sd~~v~GqAvpsVsP~~A~~YF~KieCFCF~eQ~L~pgE~~~M-----vDP~i~ 77 (100)
..+|+|++|+|||||+++++|+|+|++|++++|||+|||+|++||.||||||||||+||+|+|||+++| |||+|+
T Consensus 48 ~F~P~q~~v~V~pGE~~~~~y~a~N~sd~~i~G~A~ynV~P~~a~~YF~KieCFCF~eQ~L~pgE~~~MPV~F~IDP~i~ 127 (164)
T 1so9_A 48 EFVPVQRDIDVRIGETVQIMYRAKNLASTPTTGQATFNVTPMAAGAYFNKVQCFCFTETTLEPGEEMEMPVVFFVDPEIV 127 (164)
T ss_dssp EEECSCSEEEECTTCCCCEEEEEEECSSSCEECCCEEEECSSSCSTTBTTSCCSSCSCCEECTTCEEEEEECCCBCGGGG
T ss_pred EEEeceeEEEEcCCCeEEEEEEEECCCCCcEEEEECceeCHHHHhhhccceeeEcccCcccCCCCeEeeeEEEEECCCcC
Confidence 468999999999999999999999999999999999999999999999999999999999999999999 999999
Q ss_pred CCCchhhhcccc
Q psy4837 78 HHNEHKMRSQIL 89 (100)
Q Consensus 78 ~d~~~~~~~~~~ 89 (100)
+|.++++++.|-
T Consensus 128 ~D~~~~~v~tIT 139 (164)
T 1so9_A 128 KPVETQGIKTLT 139 (164)
T ss_dssp SSTTTTTCCBCC
T ss_pred CCcccCCCCEEE
Confidence 999999999874
No 2
>2qsv_A Uncharacterized protein; MCSG, structural genomics, porphyromonas gingivalis W83, PSI protein structure initiative; 2.10A {Porphyromonas gingivalis}
Probab=94.49 E-value=0.042 Score=40.02 Aligned_cols=50 Identities=18% Similarity=0.238 Sum_probs=42.0
Q ss_pred EeecCCeEEEEEEEECCCCCcEEEEEeCcccccchhhcccceeeeecc----ccccCCCCeeec---cCCC
Q psy4837 12 HVYPGETALAFYTAKNPTNSPIVGISTYNVVPFDAGQYFNKIQCFCFE----EQQLNPHEELQI---FAPK 75 (100)
Q Consensus 12 ~V~pGE~~~v~y~a~N~sd~~v~GqAvpsVsP~~A~~YF~KieCFCF~----eQ~L~pgE~~~M---vDP~ 75 (100)
.+. |+.....|.++|..+.++.=..+ +..|-|+. ..+++|||+.++ ++|+
T Consensus 130 ~i~-g~~~~~~f~i~N~G~~pL~I~~v-------------~~scgct~~~~~~~~i~PGe~~~i~v~~~~~ 186 (220)
T 2qsv_A 130 QLD-GETTKAAIEIRNVGAGPLRLHSV-------------TTRNPALTAVPDRTEIKPGGSTLLRIAVDPQ 186 (220)
T ss_dssp ECT-TSCEEEEEEEEECSSSCEEEEEE-------------EECSTTEEEEESCSEECTTCEEEEEEEECHH
T ss_pred ccC-CCeEEEEEEEEECCCCCEEEEEE-------------EeCCCCEeeecCCccCCCCCEEEEEEEEecC
Confidence 456 99999999999999999986554 45799987 889999999998 6664
No 3
>2e6j_A Hydin protein; PAPD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=87.81 E-value=1 Score=28.53 Aligned_cols=58 Identities=21% Similarity=0.212 Sum_probs=40.2
Q ss_pred EeecCCeEEEEEEEECCCCCcEEEEEeCcccccchhhcccceeeeec--cccccCCCCeeec---cCCCCC
Q psy4837 12 HVYPGETALAFYTAKNPTNSPIVGISTYNVVPFDAGQYFNKIQCFCF--EEQQLNPHEELQI---FAPKKP 77 (100)
Q Consensus 12 ~V~pGE~~~v~y~a~N~sd~~v~GqAvpsVsP~~A~~YF~KieCFCF--~eQ~L~pgE~~~M---vDP~i~ 77 (100)
.|.-|+.....|.++|.++.+..=+..+..+ ..+ .||-+ .+-+|.||++..+ ++|+-+
T Consensus 21 ~v~~g~~~~~~~~l~N~g~~p~~~~~~~~~~--~~~------~~f~v~p~~g~i~pg~~~~i~V~f~~~~~ 83 (112)
T 2e6j_A 21 KVFTGSAHCYEAILYNKGSIDALFNMTPPTS--ALG------ACFVFSPKEGIIEPSGVQAIQISFSSIIL 83 (112)
T ss_dssp EEESSCCEEEEEEEEECCSSCEEEEECCCSS--HHH------HHCEEESSEEEECTTBCCEEEEEECCCCC
T ss_pred eEEECCEEEEEEEEEECCcceEEEEEecCCc--ccc------CcEEEECCcCEECCCCEEEEEEEEECCCc
Confidence 5778999999999999999876655433111 000 13433 3668999999988 888654
No 4
>2qsv_A Uncharacterized protein; MCSG, structural genomics, porphyromonas gingivalis W83, PSI protein structure initiative; 2.10A {Porphyromonas gingivalis}
Probab=82.17 E-value=1.7 Score=31.34 Aligned_cols=56 Identities=13% Similarity=0.207 Sum_probs=41.0
Q ss_pred eecCCeEEEEEEEECCCCCcEEEEEeCcccccchhhcccceeeeeccccccCCCCeeec---cCCCCCC
Q psy4837 13 VYPGETALAFYTAKNPTNSPIVGISTYNVVPFDAGQYFNKIQCFCFEEQQLNPHEELQI---FAPKKPH 78 (100)
Q Consensus 13 V~pGE~~~v~y~a~N~sd~~v~GqAvpsVsP~~A~~YF~KieCFCF~eQ~L~pgE~~~M---vDP~i~~ 78 (100)
|..|+.....|.++|.+++++.=..+ .+ | .||.- . -...+|+|||+.++ .|++-..
T Consensus 15 v~~g~~~~~~~~i~N~g~~pl~i~~~-~~-p----~~~~~-~---~~~~~I~PG~~g~I~vt~~~~~~~ 73 (220)
T 2qsv_A 15 SMPEDEGVVRLVVNNTDESDLQVAVV-SL-P----SFVSL-D---DRAFRLQAREPRELNLSLAVPRNM 73 (220)
T ss_dssp BCTTCCCEEEEEEEECSSSCEEEEEE-EC-C----TTEEC-S---CCEEEECSSSCEEEEEEECCCTTC
T ss_pred ccCCCcceEEEEEEeCCCCceEEEec-cC-C----CceEe-e---eCcceeCCCCceEEEEEEcchhcc
Confidence 67899999999999999999987765 11 2 22221 1 13589999998888 7776653
No 5
>1suj_A CONE arrestin; sensory transduction, signaling protein; 2.38A {Ambystoma tigrinum}
Probab=76.05 E-value=3.8 Score=33.29 Aligned_cols=66 Identities=17% Similarity=0.151 Sum_probs=42.9
Q ss_pred eecCCeEEEEEEEECCCCCcEEEEEeC--ccccc--chhhcccceeeeeccccccCCCCeeec---cCCCCCC
Q psy4837 13 VYPGETALAFYTAKNPTNSPIVGISTY--NVVPF--DAGQYFNKIQCFCFEEQQLNPHEELQI---FAPKKPH 78 (100)
Q Consensus 13 V~pGE~~~v~y~a~N~sd~~v~GqAvp--sVsP~--~A~~YF~KieCFCF~eQ~L~pgE~~~M---vDP~i~~ 78 (100)
-.|||.+.+...+.|.|++.+...-+- ..+=- .....|.|+-+-......+.||.+..- +-|.++.
T Consensus 205 Y~pGE~I~V~v~I~N~Ssk~Vk~Ikv~L~Q~~~v~l~s~~~~k~~Va~~e~~e~V~pgst~~k~~~L~P~l~~ 277 (392)
T 1suj_A 205 YYHGEPINVNVKINNTTGKIVKKIKIIVEQVTDVVLFSLDKYVKTVCAEETNDTVAANSTLSKTFSVTPMLAN 277 (392)
T ss_dssp EETTCCEEEEEEEEECSSSEEEEEEEEEEEEEEECSSSCCEEEEEEEEEECCCCBCTTEEEEEEEEECCCGGG
T ss_pred ccCCCEEEEEEEEECCCCCcEeEEEEEEEEEEEEEEecCCcEEEEEEEEecCCCcCCCCEEEEEEEEeccccC
Confidence 369999999999999999998863221 11110 112344555555544558899988554 5577774
No 6
>3ugu_A S-arrestin; arrestin fold, signal termination, GPCR, outer segment, SIGN protein; 1.85A {Bos taurus} PDB: 3ugx_A 1cf1_A 1ayr_A
Probab=63.24 E-value=16 Score=29.82 Aligned_cols=64 Identities=23% Similarity=0.342 Sum_probs=40.8
Q ss_pred eecCCeEEEEEEEECCCCCcEEEE-----EeCcccccchhhcccce-eeeeccccccCCCCeeec---cCCCCCC
Q psy4837 13 VYPGETALAFYTAKNPTNSPIVGI-----STYNVVPFDAGQYFNKI-QCFCFEEQQLNPHEELQI---FAPKKPH 78 (100)
Q Consensus 13 V~pGE~~~v~y~a~N~sd~~v~Gq-----AvpsVsP~~A~~YF~Ki-eCFCF~eQ~L~pgE~~~M---vDP~i~~ 78 (100)
-.|||.+.+...+.|.|++.+... ..-.+.-...+ .|+|. ..-.+.+ ++.||.+..- +-|-+..
T Consensus 224 Y~pGE~I~V~v~I~N~Ssk~Vk~Ikv~L~Q~~~v~l~s~~-~y~~~Va~~E~~e-pV~pgst~~k~~~l~P~l~~ 296 (380)
T 3ugu_A 224 YYHGEPIPVTVAVTNSTEKTVKKIKVLVEQVTNVVLYSSD-YYIKTVAAEEAQE-KVPPNSSLTKTLTLVPLLAN 296 (380)
T ss_dssp EETTCCEEEEEEEEECSSSCEEEEEEEEEEEEEECSSSCC-EEEEEEEEEECSC-CBCTTEEEEEEEEECCCGGG
T ss_pred CcCCCEEEEEEEEEcCCCCeEeEEEEEEEEEEEEEEecCC-eEEEEEEEeccCC-cCCCCCeEEeeEEEEEeccc
Confidence 468999999999999999998753 22233333334 44444 3233344 8899987443 6665544
No 7
>3idu_A Uncharacterized protein; all beta-protein, structural genomics, PSI-2, protein structure initiative; 1.70A {Pyrococcus furiosus} PDB: 2kl6_A
Probab=61.99 E-value=22 Score=24.25 Aligned_cols=51 Identities=20% Similarity=0.083 Sum_probs=36.9
Q ss_pred EeecCCeEEEEEEEECCCCCcEEEEEeCcccccchhhcccceeeeeccccccCCCCeeec
Q psy4837 12 HVYPGETALAFYTAKNPTNSPIVGISTYNVVPFDAGQYFNKIQCFCFEEQQLNPHEELQI 71 (100)
Q Consensus 12 ~V~pGE~~~v~y~a~N~sd~~v~GqAvpsVsP~~A~~YF~KieCFCF~eQ~L~pgE~~~M 71 (100)
.+.+|+.+++...++|....+..+.. ...|.+...+-=- ...|.||++...
T Consensus 28 ~v~~G~~~ti~vtV~N~G~~~a~~~~--------V~lyvng~~v~t~-~v~La~G~s~tv 78 (127)
T 3idu_A 28 VVGVNKLAEYEVHVKNLGGIGVPSTK--------VRVYINGTLYKNW-TVSLGPKEEKVL 78 (127)
T ss_dssp EECTTCCEEEEEEEEECSSSCEEEEE--------EEEEETTEEEEEE-EEEECTTCEEEE
T ss_pred cccCCCEEEEEEEEEECCCCccCCcE--------EEEEECCEEEeeE-EeccCCCCeEEE
Confidence 68899999999999999999876533 2345555544322 236999998665
No 8
>3hrz_B Cobra venom factor; serine protease, glycosilated, multi-domain, complement SYST convertase, complement alternate pathway; HET: NAG P6G; 2.20A {Naja kaouthia} PDB: 3frp_G* 3hs0_B*
Probab=50.52 E-value=33 Score=25.31 Aligned_cols=32 Identities=19% Similarity=-0.031 Sum_probs=28.6
Q ss_pred EeecCCeEEEEEEEECCCCCcEEEEEeCcccc
Q psy4837 12 HVYPGETALAFYTAKNPTNSPIVGISTYNVVP 43 (100)
Q Consensus 12 ~V~pGE~~~v~y~a~N~sd~~v~GqAvpsVsP 43 (100)
.|+.||...+-..+.|..++.+.++.....++
T Consensus 91 sv~rGE~~~l~~~V~Ny~~~~~~v~V~l~~~~ 122 (252)
T 3hrz_B 91 SVVKNEQVEIRAILHNYVNEDIYVRVELLYNP 122 (252)
T ss_dssp CEETTCCEEEEEEEEECSSSCEEEEEEECCCT
T ss_pred EEeeCCEEEEEEEEEcccCceEEEEEEEEcCC
Confidence 36799999999999999999999998877765
No 9
>1yew_A Particulate methane monooxygenase, B subunit; membrane protein, beta barrel, oxidoreductase; 2.80A {Methylococcus capsulatus} PDB: 3rgb_A
Probab=49.03 E-value=37 Score=27.92 Aligned_cols=58 Identities=21% Similarity=0.108 Sum_probs=36.6
Q ss_pred ecCCeEEEEEEEECCCCCcEEEEE--eC-------c---ccccchhhcccceeeeeccccccCCCCeeec
Q psy4837 14 YPGETALAFYTAKNPTNSPIVGIS--TY-------N---VVPFDAGQYFNKIQCFCFEEQQLNPHEELQI 71 (100)
Q Consensus 14 ~pGE~~~v~y~a~N~sd~~v~GqA--vp-------s---VsP~~A~~YF~KieCFCF~eQ~L~pgE~~~M 71 (100)
-||-.-++...++|.+|+++.-.- +- + ..+..-..+..+=.=---...+++|||++++
T Consensus 261 vpgR~l~~~~~VtN~g~~pvrlgeF~tA~vrFln~~~~~~~~~~P~~lla~~gL~vsd~~pI~PGETr~~ 330 (382)
T 1yew_A 261 VPGRAMRMKLTITNHGNSPIRLGEFYTASVRFLDSDVYKDTTGYPEDLLAEDGLSVSDNSPLAPGETRTV 330 (382)
T ss_dssp SSCSEEEEEEEEEECSSSCEEEEEEECSSCEEECTTTCCCCSCCCGGGEETTCEEESCCSCBCTTCEEEE
T ss_pred cCCcEEEEEEEEEcCCCCceEeeeEEeccEEEeCCcccccCCCChHHhhccCCceeCCCCCcCCCceeEE
Confidence 489999999999999999986431 11 1 2222222222221112345677999999998
No 10
>3rfr_A PMOB; membrane, oxidoreductase; 2.68A {Methylocystis SP} PDB: 3chx_A
Probab=39.75 E-value=66 Score=26.76 Aligned_cols=54 Identities=20% Similarity=0.217 Sum_probs=35.7
Q ss_pred ecCCeEEEEEEEECCCCCcEEEE---------EeCcccccc--hhhccc---ceeeeeccccccCCCCeeec
Q psy4837 14 YPGETALAFYTAKNPTNSPIVGI---------STYNVVPFD--AGQYFN---KIQCFCFEEQQLNPHEELQI 71 (100)
Q Consensus 14 ~pGE~~~v~y~a~N~sd~~v~Gq---------AvpsVsP~~--A~~YF~---KieCFCF~eQ~L~pgE~~~M 71 (100)
-||-.-++...++|.+|+++.-. .-++|.|.. -..|+- -+. -.. +++|||++++
T Consensus 295 vpgR~l~~~~~VtN~g~~pvrlgeF~tA~vrFlnp~v~~~~~~~p~~l~a~~GL~---s~~-pI~PGETrt~ 362 (419)
T 3rfr_A 295 VPGRELTINVKVKNGTSQPVRLGEYTAAGLRFLNPTVFTQKPDFPDYLLADRGLS---NDD-VIAPGESKEI 362 (419)
T ss_dssp SSSSEEEEEEEEECCSSSCBEEEEEECSSCEEECTTTCSSCCCCCTTTEESCCCC---CCC-CBCTTCEEEE
T ss_pred cCCcEEEEEEEEecCCCCceEEeeEEEccEEEeCcccccCCCCCchhhhhccCCC---CCC-CcCCCcceEE
Confidence 48999999999999999998643 123332322 112221 244 334 9999999998
No 11
>3isy_A Bsupi, intracellular proteinase inhibitor; intracellular proteinase inhibitor bsupi, beta sandwich, GRE structural genomics; HET: PG4; 2.61A {Bacillus subtilis}
Probab=39.38 E-value=52 Score=22.44 Aligned_cols=59 Identities=17% Similarity=0.162 Sum_probs=38.3
Q ss_pred cCCeEEEEEEEECCCCCcEEEEEeCc------ccccchhhcc--cceeeee--ccccccCCCCeeec---cC
Q psy4837 15 PGETALAFYTAKNPTNSPIVGISTYN------VVPFDAGQYF--NKIQCFC--FEEQQLNPHEELQI---FA 73 (100)
Q Consensus 15 pGE~~~v~y~a~N~sd~~v~GqAvps------VsP~~A~~YF--~KieCFC--F~eQ~L~pgE~~~M---vD 73 (100)
.|+...+.+.++|.+++++.-+-.=+ |.=.....-+ +.-.||= +...+|+|||++.+ +|
T Consensus 16 ~g~~v~~~ltv~N~s~~~v~l~f~Sgq~~Df~v~d~~G~~VwrwS~~~~FtQa~~~~tl~pGE~~~f~~~w~ 87 (120)
T 3isy_A 16 EPEQIKFNMSLKNQSERAIEFQFSTGQKFELVVYDSEHKERYRYSKEKMFTQAFQNLTLESGETYDFSDVWK 87 (120)
T ss_dssp CSSCEEEEEEEEECSSSCEEEEESSSCCEEEEEECTTCCEEEETTTTCCCCCCCEEEEECTTCEEEEEEEES
T ss_pred CCCeEEEEEEEEcCCCCcEEEEeCCCCEEEEEEECCCCCEEEEccccchhhhhhceEEECCCCEEEEEEEeC
Confidence 89999999999999999998763222 2110111222 3333332 33458999999999 66
No 12
>4djm_A DRAB; chaperone, PILI; 2.52A {Escherichia coli}
Probab=38.25 E-value=41 Score=25.09 Aligned_cols=65 Identities=15% Similarity=0.104 Sum_probs=40.5
Q ss_pred eecCCeEEEEEEEECCCCCcEEEEEeCcccccchhhcccceeeeec--cccccCCCCeeec----cCCCCCCCCchh
Q psy4837 13 VYPGETALAFYTAKNPTNSPIVGISTYNVVPFDAGQYFNKIQCFCF--EEQQLNPHEELQI----FAPKKPHHNEHK 83 (100)
Q Consensus 13 V~pGE~~~v~y~a~N~sd~~v~GqAvpsVsP~~A~~YF~KieCFCF--~eQ~L~pgE~~~M----vDP~i~~d~~~~ 83 (100)
+.++....+...++|.++.+...|+--.=..... +. =|== --++|+||++-.+ ....||.|+|.-
T Consensus 32 Iy~~~~k~~sl~l~N~~~~P~LvQsWv~~~~~~~-----~~-pfivtPPlfRlep~~~q~lRIi~~~~~LP~DRESl 102 (239)
T 4djm_A 32 VYNPASSGETLTVINDQDYPMLVQSEVLSEDQKS-----PA-PFVVTPPLFRLDGQQSSRLRIVRTGGEFPPDRESL 102 (239)
T ss_dssp EECTTSSCEEEEEEECSSSCEEEEEEEECTTSSS-----BC-SEEEESSEEEECTTEEEEEEEEECSCCCCSSSCEE
T ss_pred EEeCCCCEEEEEEEeCCCCcEEEEEEEEcCCCCc-----cC-CEEEcCCeEEECCCCceEEEEEECCCCCCCCceEE
Confidence 4566667889999999999999998432111110 00 0111 1235788887666 455688887764
No 13
>2yue_A Protein neuralized; structure genomics, NEUZ(NHR) domain, structural genomics, NPPSFA; NMR {Drosophila melanogaster}
Probab=36.41 E-value=12 Score=26.70 Aligned_cols=18 Identities=11% Similarity=0.357 Sum_probs=15.8
Q ss_pred eeeeccccccCCCCeeec
Q psy4837 54 QCFCFEEQQLNPHEELQI 71 (100)
Q Consensus 54 eCFCF~eQ~L~pgE~~~M 71 (100)
...||++.+|++||.+.+
T Consensus 36 ~givFS~RPl~~~E~~~v 53 (168)
T 2yue_A 36 RAITFSARPVRINERICV 53 (168)
T ss_dssp CCEEEESSCCCSSCCEEE
T ss_pred ceEEEECCCCcCCCEEEE
Confidence 367899999999999887
No 14
>3imh_A Galactose-1-epimerase; structural genomics, PSI-2, protein ST initiative, NEW YORK SGX research center for structural GEN nysgxrc; 1.76A {Lactobacillus acidophilus}
Probab=35.75 E-value=27 Score=27.18 Aligned_cols=45 Identities=18% Similarity=0.122 Sum_probs=29.6
Q ss_pred eceEEEeecCCeEEEEEEEECCCCCcEEEEEeCcccccchhhcccceeeeeccccccC
Q psy4837 7 YLLTLHVYPGETALAFYTAKNPTNSPIVGISTYNVVPFDAGQYFNKIQCFCFEEQQLN 64 (100)
Q Consensus 7 ~q~~v~V~pGE~~~v~y~a~N~sd~~v~GqAvpsVsP~~A~~YF~KieCFCF~eQ~L~ 64 (100)
..+.|+|.-.+....+|..-...+. + .+..+.|=.+||+|-|.+-
T Consensus 260 sg~~l~v~t~~p~~q~YTgn~l~~~------------g-~g~~~~~~~g~clE~q~~P 304 (338)
T 3imh_A 260 NKHRLIVKTNAPALVLYAGNHFNHT------------G-IVNNIGQYDGITFEAQCPP 304 (338)
T ss_dssp SSEEEEEEESSSEEEEECCTTCCSB------------T-TBTTCCTTSCEECEEESCC
T ss_pred CCeEEEEEeCCCEEEEeCCCCcCCC------------C-CCcccCccCEEEEEccCCC
Confidence 4567788888887777766433321 2 3456677889999977543
No 15
>2ys4_A Hydrocephalus-inducing protein homolog; hydin, PAPD-like, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=35.40 E-value=87 Score=20.01 Aligned_cols=54 Identities=19% Similarity=0.140 Sum_probs=36.8
Q ss_pred EeecCCeEEEEEEEECCCCCcEEEEEeCcccccchhhcccceeeeeccccccCCCCeeec---cCCCC
Q psy4837 12 HVYPGETALAFYTAKNPTNSPIVGISTYNVVPFDAGQYFNKIQCFCFEEQQLNPHEELQI---FAPKK 76 (100)
Q Consensus 12 ~V~pGE~~~v~y~a~N~sd~~v~GqAvpsVsP~~A~~YF~KieCFCF~eQ~L~pgE~~~M---vDP~i 76 (100)
.+..|+.....+.++|.++.+..=. +.+. ..|. +.-..-.|.|||+.++ .-|.-
T Consensus 36 ~~~v~~~~~~~~~l~N~g~~~~~f~----~~~~---~~F~----i~P~~g~L~pg~~~~i~V~F~P~~ 92 (122)
T 2ys4_A 36 TCPVKYSTQKILLVRNIGNKNAVFH----IKTC---RPFS----IEPAIGTLNVGESMQLEVEFEPQS 92 (122)
T ss_dssp SEESSSCEEEEEEEECCSSSCEEEE----EECC---TTEE----EESSEEEECTTCEEEEEEEECCSS
T ss_pred CeecCCeEEEEEEEEECCCCCEEEE----EecC---CCeE----EECCcCEECCCCEEEEEEEEEcCC
Confidence 3678999999999999999876432 2211 1222 2234568999999999 66663
No 16
>2e63_A KIAA1787 protein; structure genomics, neuralized domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=34.27 E-value=15 Score=26.19 Aligned_cols=18 Identities=6% Similarity=0.207 Sum_probs=15.8
Q ss_pred eeeeccccccCCCCeeec
Q psy4837 54 QCFCFEEQQLNPHEELQI 71 (100)
Q Consensus 54 eCFCF~eQ~L~pgE~~~M 71 (100)
...||++.+|++||.+.+
T Consensus 37 ~givFS~rPl~~~E~~~v 54 (170)
T 2e63_A 37 HGLVLSREPLRDGRVFTV 54 (170)
T ss_dssp SCCEEEEEEECTTCEEEE
T ss_pred ceEEEECCCCCCCCEEEE
Confidence 357999999999999887
No 17
>1b3i_A PETE protein, protein (plastocyanin); electron transport, type I copper protein, photosynthesis; NMR {Prochlorothrix hollandica} SCOP: b.6.1.1 PDB: 2b3i_A 2jxm_A*
Probab=33.49 E-value=78 Score=18.91 Aligned_cols=50 Identities=10% Similarity=0.050 Sum_probs=28.8
Q ss_pred eEEEeecCCeEEEEEEEECCC--CCcEEEEEeCcccccchhhcccceeeeeccccccCCCCeeec
Q psy4837 9 LTLHVYPGETALAFYTAKNPT--NSPIVGISTYNVVPFDAGQYFNKIQCFCFEEQQLNPHEELQI 71 (100)
Q Consensus 9 ~~v~V~pGE~~~v~y~a~N~s--d~~v~GqAvpsVsP~~A~~YF~KieCFCF~eQ~L~pgE~~~M 71 (100)
..++|++|+++ .|. |.. ...+.-.... . |..++.+ . ++...|.|||+.+.
T Consensus 19 ~~i~v~~G~~V--~~~--n~~~~~H~~~~~~~~-~-~~~~~~~-~------~~~~~~~~g~~~~~ 70 (97)
T 1b3i_A 19 KALSISAGDTV--EFV--MNKVGPHNVIFDKVP-A-GESAPAL-S------NTKLAIAPGSFYSV 70 (97)
T ss_dssp SEEEECTTCEE--EEE--ECSSCCCCBEEEECC-T-TSCHHHH-C------BCCCCCSCSCCEEE
T ss_pred CEEEECCCCEE--EEE--ECCCCCeEEEEeCCC-C-ccccccc-c------ccceecCCCCEEEE
Confidence 57899999974 343 654 3444332211 1 4333321 1 45678999998877
No 18
>1g4m_A Beta-arrestin1; sensory transduction, alternative splicing, signaling protein; 1.90A {Bos taurus} SCOP: b.1.18.11 b.1.18.11 PDB: 1g4r_A 3gd1_C 1jsy_A 1zsh_A* 2wtr_A 2wtr_B 3gc3_A 3p2d_A
Probab=33.29 E-value=53 Score=26.16 Aligned_cols=65 Identities=18% Similarity=0.220 Sum_probs=38.5
Q ss_pred EeecCCeEEEEEEEECCCCCcEEEEEe--Cc---ccccchhhcccceeeeeccccccCCCCeeec---cCCCCC
Q psy4837 12 HVYPGETALAFYTAKNPTNSPIVGIST--YN---VVPFDAGQYFNKIQCFCFEEQQLNPHEELQI---FAPKKP 77 (100)
Q Consensus 12 ~V~pGE~~~v~y~a~N~sd~~v~GqAv--ps---VsP~~A~~YF~KieCFCF~eQ~L~pgE~~~M---vDP~i~ 77 (100)
--.|||.+.+...+.|.|++.+...-+ .. +.=...+.|-+.+.-.-. ...+.||.+... +=|.++
T Consensus 207 ~Y~pGE~I~v~v~I~N~S~k~Vk~Ikv~L~Q~~~~~~~s~~~~k~~Va~~e~-~~~V~~gs~~~~~~~L~P~l~ 279 (393)
T 1g4m_A 207 IYYHGEPISVNVHVTNNTNKTVKKIKISVRQYADICLFNTAQYKCPVAMEEA-DDTVAPSSTFCKVYTLTPFLA 279 (393)
T ss_dssp EEETTCCEEEEEEEEECSSCCEEEEEEEEEEEEEECSSBCEEEEEEEEEEEE-CCCBCTTEEEEEEEEECCCGG
T ss_pred eEcCCCEEEEEEEEEcCCCCEEeEEEEEEEEEEEEEEecCCceEEEEEEEec-CCcCCCCCEEeeEEEEcCCCC
Confidence 457999999999999999999876322 11 011122333322222222 236888887544 555554
No 19
>1pcs_A Plastocyanin; electron transport; 2.15A {Synechocystis SP} SCOP: b.6.1.1 PDB: 1m9w_A 1j5c_A 1j5d_A 1jxd_A 1jxf_A
Probab=31.19 E-value=87 Score=18.73 Aligned_cols=52 Identities=21% Similarity=0.227 Sum_probs=27.3
Q ss_pred eEEEeecCCeEEEEEEEECCCCCcEEEEEeCcc-cccchhhcccceeeeeccccccCCCCeeec
Q psy4837 9 LTLHVYPGETALAFYTAKNPTNSPIVGISTYNV-VPFDAGQYFNKIQCFCFEEQQLNPHEELQI 71 (100)
Q Consensus 9 ~~v~V~pGE~~~v~y~a~N~sd~~v~GqAvpsV-sP~~A~~YF~KieCFCF~eQ~L~pgE~~~M 71 (100)
..++|++|++++ |. |.++.+ ....+..- .|+..+.-+. ++...|.|||+.+.
T Consensus 19 ~~i~v~~G~~V~--~~--n~~~~~-H~~~~~~~~~pg~~~~~~~------~~~~~~~pG~~~~~ 71 (98)
T 1pcs_A 19 STVTIKAGEEVK--WV--NNKLSP-HNIVFDADGVPADTAAKLS------HKGLLFAAGESFTS 71 (98)
T ss_dssp SEEEECTTCEEE--EE--ECSSCC-EEEEECCSSSCHHHHHHHC------EEEEECSTTCEEEE
T ss_pred CEEEECCCCEEE--EE--ECCCCC-cEEEEeCCCCCcccccccc------ccccccCCCCEEEE
Confidence 568999999765 33 654322 22222221 2311101111 34567899998876
No 20
>2eyx_A V-CRK sarcoma virus CT10 oncogene homolog isoform A; SH3, signaling protein; NMR {Homo sapiens}
Probab=29.65 E-value=43 Score=19.28 Aligned_cols=36 Identities=25% Similarity=0.213 Sum_probs=26.6
Q ss_pred CCCCCcEEEEEeCccccc--chhhcccceeeeeccccccCCCCeeeccCC
Q psy4837 27 NPTNSPIVGISTYNVVPF--DAGQYFNKIQCFCFEEQQLNPHEELQIFAP 74 (100)
Q Consensus 27 N~sd~~v~GqAvpsVsP~--~A~~YF~KieCFCF~eQ~L~pgE~~~MvDP 74 (100)
|..+.+...+|+|...|. ... +-.|+.|+.+..++.
T Consensus 1 ~~~~~~~~~~alydy~~~~~~~~------------eLs~~~Gd~i~v~~~ 38 (67)
T 2eyx_A 1 NLQNGPIYARVIQKRVPNAYDKT------------ALALEVGELVKVTKI 38 (67)
T ss_dssp CCTTCSCBEEECCCBCCCTTCSS------------BCCBCSSEEEEEEEE
T ss_pred CCCCCCEEEEEeEEECCCCCCCC------------ccccCCCCEEEEEEe
Confidence 456677788999999886 332 677899999888543
No 21
>2dv6_A Nitrite reductase; electron transfer, reduction, denitrification, oxidoreductase; 2.20A {Hyphomicrobium denitrificans}
Probab=29.59 E-value=67 Score=24.75 Aligned_cols=22 Identities=32% Similarity=0.199 Sum_probs=16.2
Q ss_pred eEEEeecCCeEEEEEEEECCCCCc
Q psy4837 9 LTLHVYPGETALAFYTAKNPTNSP 32 (100)
Q Consensus 9 ~~v~V~pGE~~~v~y~a~N~sd~~ 32 (100)
..++|++|++ +.+++.|..+..
T Consensus 55 p~i~v~~Gd~--v~~~~~N~~~~~ 76 (447)
T 2dv6_A 55 PTLVVHEGET--VQVNLVNGEGAQ 76 (447)
T ss_dssp CCEEEETTCE--EEEEEECSSSSC
T ss_pred CeEEEcCCCE--EEEEEEcCCCCc
Confidence 5689999986 455677887653
No 22
>2kfw_A FKBP-type peptidyl-prolyl CIS-trans isomerase SLYD; protein, cobalt, copper, cytoplasm, metal- binding, nickel, rotamase, zinc; NMR {Escherichia coli}
Probab=29.31 E-value=32 Score=24.94 Aligned_cols=79 Identities=11% Similarity=0.047 Sum_probs=42.2
Q ss_pred EEeecCCeEEEEEEEECCCCCcEEEEEeCcccccchhh-cccceeeeeccc--cccCCCCeeec-cCCCCCCCCchhhhc
Q psy4837 11 LHVYPGETALAFYTAKNPTNSPIVGISTYNVVPFDAGQ-YFNKIQCFCFEE--QQLNPHEELQI-FAPKKPHHNEHKMRS 86 (100)
Q Consensus 11 v~V~pGE~~~v~y~a~N~sd~~v~GqAvpsVsP~~A~~-YF~KieCFCF~e--Q~L~pgE~~~M-vDP~i~~d~~~~~~~ 86 (100)
|++..|..+++.|.+++...+.+-.. +.-.|...-. .=+=|.- |++ .-+++||++++ |.|+..--....+.-
T Consensus 1 M~i~~gd~V~v~Y~g~~~dG~~fdss--~~~~P~~f~lG~g~vipG--~eeaL~Gm~vGe~~~v~Ippe~aYGe~~~~lV 76 (196)
T 2kfw_A 1 MKVAKDLVVSLAYQVRTEDGVLVDES--PVSAPLDYLHGHGSLISG--LETALEGHEVGDKFDVAVGANDAYGQYDENLV 76 (196)
T ss_dssp CCCCSSCEEEEEEEEEETTTEEEEEC--CTTSCCEEESSSSSSCHH--HHHHHSSSCTTCEEEEECSTTTTSSCCCTTTC
T ss_pred CCCCCCCEEEEEEEEEECCCCEEEec--CCCCCEEEEECCCCcchH--HHHHHcCCCCCCEEEEEeCcHHhcCCCChhhE
Confidence 34789999999999997444433322 1112211000 0001222 233 34679999999 888775444444455
Q ss_pred cccccee
Q psy4837 87 QILPKVE 93 (100)
Q Consensus 87 ~~~~~~~ 93 (100)
|.+|+-.
T Consensus 77 ~~vp~~~ 83 (196)
T 2kfw_A 77 QRVPKDV 83 (196)
T ss_dssp EEECGGG
T ss_pred EEEEHHH
Confidence 5555443
No 23
>2p26_A Integrin beta-2; hybrid domain, PSI domain, I-EGF DOM cell adhesion; HET: NAG; 1.75A {Homo sapiens} PDB: 1yuk_B* 1yuk_A* 2p28_A*
Probab=29.04 E-value=41 Score=25.82 Aligned_cols=24 Identities=25% Similarity=0.196 Sum_probs=20.0
Q ss_pred eeceeceEEEeecCCeEEEEEEEE
Q psy4837 3 TTHRYLLTLHVYPGETALAFYTAK 26 (100)
Q Consensus 3 ~~~p~q~~v~V~pGE~~~v~y~a~ 26 (100)
-+.|..-+++++||+.+.....++
T Consensus 75 Qi~PQ~v~l~LRpGd~vsF~V~vr 98 (280)
T 2p26_A 75 QLSPQKVTLYLRPGQAAAFNVTFR 98 (280)
T ss_dssp SEECSEEEEEECTTCCEEEEEEEC
T ss_pred eeccceEEEEecCCCeEEEEEEEE
Confidence 467889999999999988776665
No 24
>2x41_A Beta-glucosidase; hydrolase, TIM barrel fold, fibronectin type III fold; HET: BGC; 2.05A {Thermotoga neapolitana} PDB: 2x40_A* 2x42_A*
Probab=26.86 E-value=44 Score=28.51 Aligned_cols=57 Identities=25% Similarity=0.338 Sum_probs=31.6
Q ss_pred CCeEEEEEEEECCCCCcEEEEE-eCccccc-chhhcccceeeeecccc-ccCCCCeeec---cCC
Q psy4837 16 GETALAFYTAKNPTNSPIVGIS-TYNVVPF-DAGQYFNKIQCFCFEEQ-QLNPHEELQI---FAP 74 (100)
Q Consensus 16 GE~~~v~y~a~N~sd~~v~GqA-vpsVsP~-~A~~YF~KieCFCF~eQ-~L~pgE~~~M---vDP 74 (100)
|+..++...++|+.++.=.=.+ +|-=.|. ....=-+.| -=|+.- .|+|||+... |++
T Consensus 614 ~~~~~v~v~VtNtG~~~G~eVvQlYv~~~~~~~~~P~k~L--~gF~kv~~L~pGes~~V~~~l~~ 676 (721)
T 2x41_A 614 GETLRVQYRIENTGGRAGKEVSQVYIKAPKGKIDKPFQEL--KAFHKTRLLNPGESEEVVLEIPV 676 (721)
T ss_dssp SSEEEEEEEEEECSSSCBCCEEEEEEECCCSSSCCCSCEE--EEEEECCCBCTTCEEEEEEEEEG
T ss_pred CCeEEEEEEEEECCCCCCcEEeeEEEccCCCCCCCchHHh--hcccccccCCCCCeEEEEEEECH
Confidence 7889999999999886421111 1111111 111111222 234454 6999999887 554
No 25
>3zyz_A Beta-D-glucoside glucohydrolase; HET: NAG BGC; 2.10A {Hypocrea jecorina} PDB: 3zz1_A* 4i8d_A*
Probab=26.63 E-value=61 Score=27.79 Aligned_cols=51 Identities=16% Similarity=0.118 Sum_probs=31.1
Q ss_pred CCeEEEEEEEECCCCCcEEEEE-eCc-------ccccchhhcccceeeeeccccccCCCCeeec---cCC
Q psy4837 16 GETALAFYTAKNPTNSPIVGIS-TYN-------VVPFDAGQYFNKIQCFCFEEQQLNPHEELQI---FAP 74 (100)
Q Consensus 16 GE~~~v~y~a~N~sd~~v~GqA-vps-------VsP~~A~~YF~KieCFCF~eQ~L~pgE~~~M---vDP 74 (100)
++..+|.+.++|+.++.=.=.+ +|- ..|.+.-+=|.|+ .|+|||++.. |++
T Consensus 612 ~~~~~vsv~VtNtG~~~G~EVvQlYv~~~~~~~~~P~k~L~gF~kv--------~L~pGes~~V~~~l~~ 673 (713)
T 3zyz_A 612 QNVATVTVDIANSGQVTGAEVAQLYITYPSSAPRTPPKQLRGFAKL--------NLTPGQSGTATFNIRR 673 (713)
T ss_dssp SEEEEEEEEEEECSSSCEEEEEEEEEECCTTSSSCCSCEEEEEEEE--------EECTTCEEEEEEEEEG
T ss_pred CCeEEEEEEEEeCCCCccceeeeeeeecCCCCCCchhHHhhhcccc--------eeCCCCeEEEEEEEcH
Confidence 5678999999999986422111 121 1233333334444 5999999887 554
No 26
>3qbt_B Inositol polyphosphate 5-phosphatase OCRL-1; protein transport, vesicular trafficking, GTPase, LOWE syndr immunoglobulin fold, RAB8A, endocytosis; HET: GNP; 2.00A {Homo sapiens}
Probab=26.48 E-value=1.5e+02 Score=19.87 Aligned_cols=57 Identities=18% Similarity=0.008 Sum_probs=37.6
Q ss_pred EeecCCeEEEEEEEECCCCCcEEEEEeCcccccchhhcccceeeeeccccccCCCCeeec
Q psy4837 12 HVYPGETALAFYTAKNPTNSPIVGISTYNVVPFDAGQYFNKIQCFCFEEQQLNPHEELQI 71 (100)
Q Consensus 12 ~V~pGE~~~v~y~a~N~sd~~v~GqAvpsVsP~~A~~YF~KieCFCF~eQ~L~pgE~~~M 71 (100)
.|+-|+...-.+.++|.+.-+..=..++. |. ...+....=.+--.+=+|.|||+...
T Consensus 38 ~v~~~~~~~~~l~I~Ntg~vpa~F~f~~~--~~-~~~~~~~wl~v~P~~G~L~Pge~~~I 94 (140)
T 3qbt_B 38 NVKFRQLQKEKFQISNNGQVPCHFSFIPK--LN-DSQYCKPWLRAEPFEGYLEPNETVDI 94 (140)
T ss_dssp EECBTCCEEEEEEEEECSSSCEEEEEECC--TT-CSSSSCTTEEEESCEEEECTTCEEEE
T ss_pred eceeeeeeeeEEEEEcCCccceEEEEecC--CC-chhhhhHhhhcCCcccccCCCCeeEE
Confidence 38889999999999999999887666532 11 11121111112234569999999988
No 27
>1iby_A Nitrosocyanin; RED copper, cupredoxin, beta hairpin, metal binding protein; 1.65A {Nitrosomonas europaea} SCOP: b.6.1.4 PDB: 1ibz_A 1ic0_A
Probab=25.86 E-value=1.2e+02 Score=18.69 Aligned_cols=45 Identities=22% Similarity=0.249 Sum_probs=30.4
Q ss_pred ceEEEeecCCeEEEEEEEECCCCCcEEEEEeCcccccchhhcccceeeeeccccccCCCCeeec
Q psy4837 8 LLTLHVYPGETALAFYTAKNPTNSPIVGISTYNVVPFDAGQYFNKIQCFCFEEQQLNPHEELQI 71 (100)
Q Consensus 8 q~~v~V~pGE~~~v~y~a~N~sd~~v~GqAvpsVsP~~A~~YF~KieCFCF~eQ~L~pgE~~~M 71 (100)
-..++|++|+..++ .++|..+. ..|..+++. + + +..+.|||+...
T Consensus 37 p~~i~v~~G~~V~~--~~~n~d~~-~H~~~i~~~-----~-----~------~~~i~pG~~~~~ 81 (112)
T 1iby_A 37 PETLVVKKGDAVKV--VVENKSPI-SEGFSIDAF-----G-----V------QEVIKAGETKTI 81 (112)
T ss_dssp SCEEEEETTCEEEE--EEEECSSS-CEEEEEGGG-----T-----E------EEEECTTCEEEE
T ss_pred CCEEEEeCCCEEEE--EEEECCCC-eEEEEEcCC-----C-----c------eeEeCCCCEEEE
Confidence 36789999987665 45666543 566666543 1 1 457999998887
No 28
>1plc_A Plastocyanin; electron transport; 1.33A {Populus nigra} SCOP: b.6.1.1 PDB: 1pnc_A 1pnd_A 1tkw_A* 2pcy_A 3pcy_A 4pcy_A 5pcy_A 6pcy_A 1jxg_A 1ag6_A 1ylb_B 2pcf_A* 1oow_A 1tef_A 9pcy_A 1teg_A 1byo_A
Probab=25.19 E-value=1.2e+02 Score=18.23 Aligned_cols=18 Identities=28% Similarity=0.591 Sum_probs=13.1
Q ss_pred eEEEeecCCeEEEEEEEECCCC
Q psy4837 9 LTLHVYPGETALAFYTAKNPTN 30 (100)
Q Consensus 9 ~~v~V~pGE~~~v~y~a~N~sd 30 (100)
..++|++|++++ | .|.++
T Consensus 17 ~~i~v~~G~tV~--~--~n~~~ 34 (99)
T 1plc_A 17 SEFSISPGEKIV--F--KNNAG 34 (99)
T ss_dssp SEEEECTTCEEE--E--EECSS
T ss_pred CEEEECCCCEEE--E--EECCC
Confidence 579999999653 3 67764
No 29
>3t3p_B Integrin beta-3; integrin, cell adhesion, blood clotting, fibrinogen, platele; HET: NAG BMA MAN; 2.20A {Homo sapiens} PDB: 3t3m_B* 3nig_B* 3nif_B* 3nid_B* 2vdr_B* 2vc2_B* 2vdk_B* 2vdm_B* 2vdn_B* 2vdl_B* 2vdp_B* 2vdq_B* 2vdo_B* 3fcu_B* 1txv_B* 1ty3_B* 1ty5_B* 1ty6_B* 1ty7_B* 1tye_B*
Probab=23.70 E-value=95 Score=25.79 Aligned_cols=40 Identities=8% Similarity=0.084 Sum_probs=32.0
Q ss_pred eeceeceEEEeecCCeEEEEEEEECCCCCcEEEEEeCccc
Q psy4837 3 TTHRYLLTLHVYPGETALAFYTAKNPTNSPIVGISTYNVV 42 (100)
Q Consensus 3 ~~~p~q~~v~V~pGE~~~v~y~a~N~sd~~v~GqAvpsVs 42 (100)
-+.|..-.++++|||..++...++=..+.|+--.-+.-+|
T Consensus 82 Qi~Pq~v~l~LRpG~~~~f~v~~~~~~~ypvDLy~LmDlS 121 (472)
T 3t3p_B 82 QVSPQRIALRLRPDDSKNFSIQVRQVEDYPVDIYYLMDLS 121 (472)
T ss_dssp CEECCEEEEEECTTCEEEEEEEEECCSSCCEEEEEEEECS
T ss_pred cccCcEEEEEecCCCcEEEEEEeecCCCCCceEEEEEccC
Confidence 4678889999999999999999998888887655444333
No 30
>1byp_A Protein (plastocyanin); electron transfer, photosynthesis, acidic patch, double mutant, electron transport; 1.75A {Silene latifolia subsp} SCOP: b.6.1.1 PDB: 1pla_A 1plb_A
Probab=23.57 E-value=1.1e+02 Score=18.28 Aligned_cols=18 Identities=28% Similarity=0.418 Sum_probs=12.9
Q ss_pred eEEEeecCCeEEEEEEEECCCC
Q psy4837 9 LTLHVYPGETALAFYTAKNPTN 30 (100)
Q Consensus 9 ~~v~V~pGE~~~v~y~a~N~sd 30 (100)
..++|++|++. .| .|.++
T Consensus 17 ~~i~v~~G~tV--~~--~n~~~ 34 (99)
T 1byp_A 17 SDLSIASGEKI--TF--KNNAG 34 (99)
T ss_dssp SEEEECTTEEE--EE--EECSS
T ss_pred CEEEECCCCEE--EE--EECCC
Confidence 57899999964 34 67763
No 31
>2wtp_A ORF131 protein, CZCE; metal binding protein, heavy metal, copper binding; HET: TRS; 1.50A {Ralstonia metallidurans CH34} PDB: 2wto_A*
Probab=23.57 E-value=43 Score=23.62 Aligned_cols=26 Identities=23% Similarity=0.243 Sum_probs=18.8
Q ss_pred eeeceeceEEEeecCCeEEEEEEEECCC
Q psy4837 2 ITTHRYLLTLHVYPGETALAFYTAKNPT 29 (100)
Q Consensus 2 ~~~~p~q~~v~V~pGE~~~v~y~a~N~s 29 (100)
|++.+..+.+.|..||++ -|.+.|.+
T Consensus 64 I~V~m~~k~InV~~GETV--rF~v~nkt 89 (131)
T 2wtp_A 64 IDVKPGMRYVNVDSGETV--AFRAGEKI 89 (131)
T ss_dssp EECCTTCCEEEEETTCEE--EEEETTEE
T ss_pred EEEccCCeEEEecCCCEE--EEEeCCcE
Confidence 556667788999999975 46676643
No 32
>2plt_A Plastocyanin; electron transport; 1.50A {Chlamydomonas reinhardtii} SCOP: b.6.1.1
Probab=23.38 E-value=1.2e+02 Score=17.93 Aligned_cols=53 Identities=23% Similarity=0.283 Sum_probs=27.7
Q ss_pred eEEEeecCCeEEEEEEEECCCCCcEEEEEeCcc-cccchhhcccceeeeeccccccCCCCeeec
Q psy4837 9 LTLHVYPGETALAFYTAKNPTNSPIVGISTYNV-VPFDAGQYFNKIQCFCFEEQQLNPHEELQI 71 (100)
Q Consensus 9 ~~v~V~pGE~~~v~y~a~N~sd~~v~GqAvpsV-sP~~A~~YF~KieCFCF~eQ~L~pgE~~~M 71 (100)
..++|++|++.+ | .|.++.+ ....+..- .|..+.. .++. ++...|.|||+.+.
T Consensus 18 ~~i~v~~G~~V~--~--~n~~~~~-H~~~~~~~~~p~~~~~--~~~~---~~~~~~~pG~~~~~ 71 (98)
T 2plt_A 18 KTLTIKSGETVN--F--VNNAGFP-HNIVFDEDAIPSGVNA--DAIS---RDDYLNAPGETYSV 71 (98)
T ss_dssp SEEEECTTCEEE--E--EECSSCC-EEEEECGGGSCTTCCH--HHHC---EEEEECSTTCEEEE
T ss_pred CEEEECCCCEEE--E--EECCCCc-eEEEEeCCCCCCcccc--cccc---ccceecCCCCEEEE
Confidence 468999999764 3 6776432 22222221 1211100 0011 24467899998877
No 33
>3ucp_A UNDA; beta-barrel, C-type cytochrome, electron transport, C-type H cell surface, transport protein; HET: HEC; 1.76A {Shewanella SP} PDB: 3ufh_A* 3ufk_A*
Probab=22.29 E-value=1.2e+02 Score=23.89 Aligned_cols=33 Identities=21% Similarity=0.277 Sum_probs=25.8
Q ss_pred eeceeceEEEeecCCeEEEEEEEECCCCCcEEEE
Q psy4837 3 TTHRYLLTLHVYPGETALAFYTAKNPTNSPIVGI 36 (100)
Q Consensus 3 ~~~p~q~~v~V~pGE~~~v~y~a~N~sd~~v~Gq 36 (100)
+|......+.+.-| ...|.|.++|..+.+++|-
T Consensus 53 ~~~~~~~~~~~~~g-~~~v~f~~~n~~g~~v~gl 85 (874)
T 3ucp_A 53 TLKATLEDVKIDNG-TVSVDIVLTNANGVPVTGL 85 (874)
T ss_dssp CCEEEEEEEEEETT-EEEEEEEEECTTCCBEECG
T ss_pred eEEEEeeeEEeeCC-cEEEEEEEECCCCCeeecc
Confidence 34556667777666 5889999999999999874
No 34
>3cgm_A SLYD, peptidyl-prolyl CIS-trans isomerase; chaperone function, two domain P rotamase; 2.41A {Thermus thermophilus} PDB: 3cgn_A 3luo_A*
Probab=22.17 E-value=46 Score=23.08 Aligned_cols=73 Identities=15% Similarity=0.040 Sum_probs=39.2
Q ss_pred EeecCCeEEEEEEEECCCCCcEEEEE-eCcccccchhhcccceeeeeccccccCCCCeeec-cCCCCCCCCchhhhcccc
Q psy4837 12 HVYPGETALAFYTAKNPTNSPIVGIS-TYNVVPFDAGQYFNKIQCFCFEEQQLNPHEELQI-FAPKKPHHNEHKMRSQIL 89 (100)
Q Consensus 12 ~V~pGE~~~v~y~a~N~sd~~v~GqA-vpsVsP~~A~~YF~KieCFCF~eQ~L~pgE~~~M-vDP~i~~d~~~~~~~~~~ 89 (100)
++..|..+++.|..+ ...+..-..- .+.+- .+ +=+..|--.=.-+++||++++ |.|+..--....++-|.+
T Consensus 2 ~i~~gd~V~v~Y~g~-~dG~~fdss~~~f~~G---~g---~vipG~e~aL~Gm~~Ge~~~v~ipp~~aYG~~~~~lv~~v 74 (158)
T 3cgm_A 2 KVGQDKVVTIRYTLQ-VEGEVLDQGELSYLHG---HR---NLIPGLEEALEGREEGEAFQAHVPAEKAYGPHDPEGVQVV 74 (158)
T ss_dssp BCCTTEEEEEEEEEE-ETTEEEEEEEEEEETT---SS---SSCHHHHHHHTTCBTTCEEEEEECGGGTTCCCCGGGEEEE
T ss_pred cCCCCCEEEEEEEEE-ECCEEEEeeEEEEEEC---CC---CcChHHHHHHcCCCCCCEEEEEECcHHHcCCCCcceEEEE
Confidence 477899999999999 5444443321 11111 01 112332222244689999999 777655433333444444
Q ss_pred cc
Q psy4837 90 PK 91 (100)
Q Consensus 90 ~~ 91 (100)
|+
T Consensus 75 ~~ 76 (158)
T 3cgm_A 75 PL 76 (158)
T ss_dssp EG
T ss_pred EH
Confidence 43
No 35
>1v10_A Laccase; multicopper blue oxidase, oxidase; 1.7A {Rigidoporus lignosus} SCOP: b.6.1.3 b.6.1.3 b.6.1.3
Probab=21.05 E-value=2e+02 Score=23.12 Aligned_cols=61 Identities=8% Similarity=0.052 Sum_probs=35.0
Q ss_pred eEEEeecCCeEEEEEEEECCCCCcEEEEEeCcccccc---hhhcccceeeeeccccccCCCCeeec-cCC
Q psy4837 9 LTLHVYPGETALAFYTAKNPTNSPIVGISTYNVVPFD---AGQYFNKIQCFCFEEQQLNPHEELQI-FAP 74 (100)
Q Consensus 9 ~~v~V~pGE~~~v~y~a~N~sd~~v~GqAvpsVsP~~---A~~YF~KieCFCF~eQ~L~pgE~~~M-vDP 74 (100)
..++|++|+.++ +++-|.+.....--.+-.-.=.. =|.|.+- .=-+...|.|||+.+. |+.
T Consensus 212 ~~~~v~~G~~~R--lRliNa~~~~~~~~~i~gh~~~vi~~DG~~~~p---~~~~~l~l~pgqR~dvlv~~ 276 (521)
T 1v10_A 212 AVVSVQSGKRYR--FRIVSTSCFPNYAFSIDGHRMTVIEVDGVSHQP---LTVDSLTIFAGQRYSVVVEA 276 (521)
T ss_dssp CEEEECTTCEEE--EEEEECCSSCCEEEEETTCCEEEEEETTEEEEE---EEESBEEECTTCEEEEEEEC
T ss_pred eEEEECCCCEEE--EEEEecCCcccEEEEECCCeEEEEecCCccccc---eeeeeEEEcccceEEEEEEc
Confidence 578999999876 77888887654333332211100 0112111 2235677889998888 543
No 36
>2awg_A 38 kDa FK-506 binding protein; FKBP-type, ppiase, BCL-2 inhibitor, SHH signalling antagonist, structural genomics consortium, SGC; 1.60A {Homo sapiens} PDB: 2f2d_A 3ey6_A
Probab=20.65 E-value=96 Score=19.62 Aligned_cols=62 Identities=10% Similarity=0.010 Sum_probs=36.4
Q ss_pred EeecCCeEEEEEEEECCCCCcEEEEEeCcccccchhhcccceeeeeccccccCCCCeeec-cCCCCC
Q psy4837 12 HVYPGETALAFYTAKNPTNSPIVGISTYNVVPFDAGQYFNKIQCFCFEEQQLNPHEELQI-FAPKKP 77 (100)
Q Consensus 12 ~V~pGE~~~v~y~a~N~sd~~v~GqAvpsVsP~~A~~YF~KieCFCF~eQ~L~pgE~~~M-vDP~i~ 77 (100)
.+..|..+.+.|..+....+.+-....+.+.-+. + .-+..|---=+-++.||++.+ |.|++.
T Consensus 29 ~~~~gd~V~v~y~g~~~dG~~~ds~~p~~f~lG~-~---~~i~g~e~~l~gm~~Ge~~~~~ip~~~a 91 (118)
T 2awg_A 29 RPVKGQVVTVHLQTSLENGTRVQEEPELVFTLGD-C---DVIQALDLSVPLMDVGETAMVTADSKYC 91 (118)
T ss_dssp CCCTTSEEEEEEEEECTTSCEEEEEEEEEEETTS-S---CSCHHHHHHGGGSCTTCEEEEEECGGGT
T ss_pred cCCCCCEEEEEEEEEECCCCEEECCCCEEEEECC-C---ChhHHHHHHHhCCCCCCEEEEEEChHHc
Confidence 4567889999999998666655542111111110 0 113333223356789999999 776664
No 37
>1hfu_A Laccase 1; oxidoreductase, blue multi-copper oxidase, type-2 copper depleted, signal, glycoprotein; HET: MAN NAG NDG; 1.68A {Coprinus cinereus} SCOP: b.6.1.3 b.6.1.3 b.6.1.3 PDB: 1a65_A*
Probab=20.37 E-value=2.1e+02 Score=22.79 Aligned_cols=61 Identities=10% Similarity=0.014 Sum_probs=35.4
Q ss_pred eEEEeecCCeEEEEEEEECCCCCcEEEEEeCcccccc---hhhcccceeeeeccccccCCCCeeec-cCC
Q psy4837 9 LTLHVYPGETALAFYTAKNPTNSPIVGISTYNVVPFD---AGQYFNKIQCFCFEEQQLNPHEELQI-FAP 74 (100)
Q Consensus 9 ~~v~V~pGE~~~v~y~a~N~sd~~v~GqAvpsVsP~~---A~~YF~KieCFCF~eQ~L~pgE~~~M-vDP 74 (100)
..++|.+|+.++ +++-|.+.....--++-.-.=.. =|.|..- .=-+...|.|||+.+. |+.
T Consensus 185 ~~~~v~~g~~~R--lRliN~~~~~~~~~~i~gh~~~vi~~DG~~~~p---~~~~~l~l~pgeR~dvlv~~ 249 (503)
T 1hfu_A 185 SIVNVEQGKKYR--MRLISLSCDPNWQFSIDGHELTIIEVDGELTEP---HTVDRLQIFTGQRYSFVLDA 249 (503)
T ss_dssp CEEEECTTCEEE--EEEEECCSSCCEEEEETTCCEEEEEETTEEEEE---EEESBEEECTTCEEEEEEEC
T ss_pred eEEEEcCCCEEE--EEEEecCCcccEEEEEcCceEEEEeccCccccc---cccCeEEEcccceEEEEEEc
Confidence 578999999876 77888887654333332211100 0112111 2245677899999888 554
No 38
>3v4v_B Integrin beta-7; cell adhesion, madcam-1, membrane; HET: NAG BMA MAN 0DU; 3.10A {Homo sapiens} PDB: 3v4p_B*
Probab=20.25 E-value=1.1e+02 Score=25.78 Aligned_cols=40 Identities=10% Similarity=0.036 Sum_probs=32.0
Q ss_pred eeceeceEEEeecCCeEEEEEEEECCCCCcEEEEEeCccc
Q psy4837 3 TTHRYLLTLHVYPGETALAFYTAKNPTNSPIVGISTYNVV 42 (100)
Q Consensus 3 ~~~p~q~~v~V~pGE~~~v~y~a~N~sd~~v~GqAvpsVs 42 (100)
-+.|..-.++++||+...+...++=..+.|+--.-+.-+|
T Consensus 103 Qi~PQ~v~l~LRpG~~~~f~v~~~~~~~yPVDLyyLmDlS 142 (503)
T 3v4v_B 103 QLAPQRVRVTLRPGEPQQLQVRFLRAEGYPVDLYYLMDLS 142 (503)
T ss_dssp CEECCEEEEECBTTBCEEEEEEEECCSSCCEEEEEEEECS
T ss_pred eecCceEEEEecCCCcEEEEEEEEccCCCceeEEEEEecC
Confidence 4678889999999999999999998888887655444333
Done!