Query psy4837
Match_columns 100
No_of_seqs 107 out of 420
Neff 4.0
Searched_HMMs 13730
Date Fri Aug 16 19:01:35 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy4837.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/4837hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1so9a_ b.146.1.1 (A:) Cytochr 100.0 7.6E-41 5.6E-45 239.0 4.2 87 3-89 28-119 (131)
2 d1w8oa1 b.1.18.2 (A:403-505) S 86.8 0.23 1.7E-05 31.4 2.9 54 10-71 10-63 (103)
3 d2co7b1 b.1.11.1 (B:8-135) Per 58.0 17 0.0013 22.6 6.3 70 8-82 11-84 (128)
4 d1qnia1 b.6.1.4 (A:451-581) Ni 48.5 21 0.0015 22.5 5.5 45 9-71 51-97 (131)
5 d1cf1a2 b.1.18.11 (A:183-393) 48.0 29 0.0021 23.5 6.6 54 13-70 32-93 (211)
6 d1cr5a2 d.31.1.1 (A:108-210) C 45.2 5.1 0.00037 25.3 1.9 24 44-71 30-53 (103)
7 d1guia_ b.18.1.14 (A:) Carbohy 43.9 20 0.0015 21.5 4.7 34 10-43 66-99 (155)
8 d1fwxa1 b.6.1.4 (A:452-581) Ni 40.3 35 0.0026 21.3 5.7 31 9-41 52-84 (132)
9 d1gu3a_ b.18.1.14 (A:) Cellulo 38.8 15 0.0011 22.2 3.5 32 7-38 41-72 (142)
10 d1qcsa2 d.31.1.1 (A:86-201) C- 36.7 6.9 0.0005 25.1 1.5 32 44-79 30-77 (116)
11 d1tyeb1 b.1.15.1 (B:58-106,B:3 33.0 21 0.0015 23.0 3.5 26 2-27 24-49 (135)
12 d1g4ma2 b.1.18.11 (A:176-393) 29.1 37 0.0027 22.7 4.5 26 12-37 32-57 (218)
13 d3es6b1 b.1.18.23 (B:1-118) Pr 26.2 65 0.0047 19.5 5.1 46 12-57 17-63 (118)
14 d2vn6a1 b.2.2.2 (A:12-152) Coh 26.0 48 0.0035 20.2 4.4 32 4-35 2-34 (141)
15 d1cx1a_ b.18.1.14 (A:) Cellulo 25.9 30 0.0022 20.7 3.3 32 7-38 54-85 (153)
16 d2bw4a1 b.6.1.3 (A:8-164) Nitr 25.7 52 0.0038 20.9 4.6 50 10-71 65-115 (157)
17 d1vjja2 b.1.5.1 (A:479-593) Tr 25.4 32 0.0023 21.0 3.3 56 12-71 13-72 (115)
18 d1ex0a2 b.1.5.1 (A:516-627) Tr 24.1 35 0.0025 20.7 3.3 56 12-71 11-70 (112)
19 d1ppjg_ f.23.13.1 (G:) Ubiquin 23.7 13 0.00095 22.4 1.1 14 32-45 9-22 (75)
20 d2q3za2 b.1.5.1 (A:472-585) Tr 23.2 37 0.0027 20.7 3.3 65 12-80 11-88 (114)
21 d1fnla1 b.1.1.4 (A:3-86) Fc ga 21.8 24 0.0018 19.5 2.0 47 2-50 8-68 (84)
22 d1ujya_ b.34.2.1 (A:) Rac/CDC4 20.0 65 0.0047 18.0 3.8 34 28-73 6-39 (76)
No 1
>d1so9a_ b.146.1.1 (A:) Cytochrome C oxidase assembly protein CtaG {Rhizobium meliloti (Sinorhizobium meliloti) [TaxId: 382]}
Probab=100.00 E-value=7.6e-41 Score=238.96 Aligned_cols=87 Identities=37% Similarity=0.625 Sum_probs=84.5
Q ss_pred eeceeceEEEeecCCeEEEEEEEECCCCCcEEEEEeCcccccchhhcccceeeeeccccccCCCCeeec-----cCCCCC
Q psy4837 3 TTHRYLLTLHVYPGETALAFYTAKNPTNSPIVGISTYNVVPFDAGQYFNKIQCFCFEEQQLNPHEELQI-----FAPKKP 77 (100)
Q Consensus 3 ~~~p~q~~v~V~pGE~~~v~y~a~N~sd~~v~GqAvpsVsP~~A~~YF~KieCFCF~eQ~L~pgE~~~M-----vDP~i~ 77 (100)
..+|++++|.|||||.++++|+|+|+++++++|||+|||+|++||.||+|||||||++|+|+|||+++| |||+|+
T Consensus 28 ~F~P~~~~i~V~pGe~~~v~y~a~N~s~~~~~g~A~~nV~P~~a~~Yf~KieCFCF~~Q~L~pgE~~~mpv~F~IDP~i~ 107 (131)
T d1so9a_ 28 EFVPVQRDIDVRIGETVQIMYRAKNLASTPTTGQATFNVTPMAAGAYFNKVQCFCFTETTLEPGEEMEMPVVFFVDPEIV 107 (131)
T ss_dssp EEECSCSEEEECTTCCCCEEEEEEECSSSCEECCCEEEECSSSCSTTBTTSCCSSCSCCEECTTCEEEEEECCCBCGGGG
T ss_pred EEEecceEEEEeCCCeEEEEEEEECCCCCcEEEEEEeeeCHHHHhhheecCcEEEEeeeEECCCCEEEEeEEEEECCccc
Confidence 568999999999999999999999999999999999999999999999999999999999999999999 999999
Q ss_pred CCCchhhhcccc
Q psy4837 78 HHNEHKMRSQIL 89 (100)
Q Consensus 78 ~d~~~~~~~~~~ 89 (100)
+|.+.++++.|-
T Consensus 108 ~D~~~~~i~~iT 119 (131)
T d1so9a_ 108 KPVETQGIKTLT 119 (131)
T ss_dssp SSTTTTTCCBCC
T ss_pred cCCCcCCcCEEE
Confidence 999999999873
No 2
>d1w8oa1 b.1.18.2 (A:403-505) Sialidase, "linker" domain {Micromonospora viridifaciens [TaxId: 1881]}
Probab=86.77 E-value=0.23 Score=31.36 Aligned_cols=54 Identities=13% Similarity=0.016 Sum_probs=38.5
Q ss_pred EEEeecCCeEEEEEEEECCCCCcEEEEEeCcccccchhhcccceeeeeccccccCCCCeeec
Q psy4837 10 TLHVYPGETALAFYTAKNPTNSPIVGISTYNVVPFDAGQYFNKIQCFCFEEQQLNPHEELQI 71 (100)
Q Consensus 10 ~v~V~pGE~~~v~y~a~N~sd~~v~GqAvpsVsP~~A~~YF~KieCFCF~eQ~L~pgE~~~M 71 (100)
++.|.||+...+...++|..+.+.....+-.-.|.-... . .....|+|||+...
T Consensus 10 ~~~v~pG~~~~~~vtVtN~g~~~~~~~~~~~~~P~GW~v--~------~~~~~L~pG~s~~~ 63 (103)
T d1w8oa1 10 DVALEPGQQVTVPVAVTNQSGIAVPKPSLQLDASPDWQV--Q------GSVEPLMPGRQAKG 63 (103)
T ss_dssp CEEECTTCEEEEEEEEECCSSSCBSSCEEEEECCTTSEE--E------EEECCBCTTCEEEE
T ss_pred ceeeCCCCeEEEEEEEEeCCCCceeeeeEEEcCCCCccc--c------CcceeeCCCCcEEE
Confidence 578999999999999999998887643332234532211 1 33456999999988
No 3
>d2co7b1 b.1.11.1 (B:8-135) Periplasmic chaperone SafB {Salmonella typhimurium [TaxId: 90371]}
Probab=57.99 E-value=17 Score=22.62 Aligned_cols=70 Identities=20% Similarity=0.161 Sum_probs=45.9
Q ss_pred ceEEEeecCCeEEEEEEEECCCCCcEEEEEeCcccccchhhcccceeeeeccccccCCCCeeec----cCCCCCCCCch
Q psy4837 8 LLTLHVYPGETALAFYTAKNPTNSPIVGISTYNVVPFDAGQYFNKIQCFCFEEQQLNPHEELQI----FAPKKPHHNEH 82 (100)
Q Consensus 8 q~~v~V~pGE~~~v~y~a~N~sd~~v~GqAvpsVsP~~A~~YF~KieCFCF~eQ~L~pgE~~~M----vDP~i~~d~~~ 82 (100)
+..+..+-|+ ..+...+.|.++.+...|+--.-.++....-|- .==--..|+||++-.+ ....+|.|.|.
T Consensus 11 ~TRvi~~~~~-~~~sv~l~N~~~~p~lvQ~~v~~~~~~~~~~fi----vtPPl~rl~p~~~q~vRI~~~~~~lp~drEs 84 (128)
T d2co7b1 11 ATRVIYHAGT-AGATLSVSNPQNYPILVQSSVKAADKSSPAPFL----VMPPLFRLEANQQSQLRIVRTGGDMPTDRET 84 (128)
T ss_dssp CSEEEEETTS-SCEEEEEECCSSSCEEEEEEEEETTSSSBCSEE----EESSEEEECTTCEEEEEEEECCCCCCSSSCE
T ss_pred CeEEEEcCCC-CEEEEEEEeCCCCcEEEEEEEEcCCCCccCCEE----EeCceeEECCCCceEEEEEecCCCCCCCcEE
Confidence 4455555554 577899999999999999854433433332221 1122356899998766 67788888774
No 4
>d1qnia1 b.6.1.4 (A:451-581) Nitrous oxide reductase, C-terminal domain {Pseudomonas nautica [TaxId: 2743]}
Probab=48.45 E-value=21 Score=22.55 Aligned_cols=45 Identities=13% Similarity=0.177 Sum_probs=31.6
Q ss_pred eEEEeecCCeEEEEEEEECC--CCCcEEEEEeCcccccchhhcccceeeeeccccccCCCCeeec
Q psy4837 9 LTLHVYPGETALAFYTAKNP--TNSPIVGISTYNVVPFDAGQYFNKIQCFCFEEQQLNPHEELQI 71 (100)
Q Consensus 9 ~~v~V~pGE~~~v~y~a~N~--sd~~v~GqAvpsVsP~~A~~YF~KieCFCF~eQ~L~pgE~~~M 71 (100)
..++|+.|+. |.+.++|. +...+.|-+++..- -++.+.||++..+
T Consensus 51 ~~i~V~~Gd~--V~~~vtn~~~s~Dv~H~f~ip~~~----------------v~~~~~PG~t~~~ 97 (131)
T d1qnia1 51 TDFKVKEGDE--VTVYITNLDMVEDVTHGFCMVNHG----------------VSMEISPQQTASV 97 (131)
T ss_dssp SEEEEETTCE--EEEEEEECCCSTTCCEEEEETTTT----------------EEEEECTTCEEEE
T ss_pred ceEEecCCCE--EEEEEEccCCCCcceEEEEEeccC----------------cccccCCCceEEE
Confidence 5789999995 66777886 45667888887742 1244667877666
No 5
>d1cf1a2 b.1.18.11 (A:183-393) Arrestin {Cow (Bos taurus), visual arrestin [TaxId: 9913]}
Probab=48.05 E-value=29 Score=23.55 Aligned_cols=54 Identities=17% Similarity=0.238 Sum_probs=36.4
Q ss_pred eecCCeEEEEEEEECCCCCcEEEEE--------eCcccccchhhcccceeeeeccccccCCCCeee
Q psy4837 13 VYPGETALAFYTAKNPTNSPIVGIS--------TYNVVPFDAGQYFNKIQCFCFEEQQLNPHEELQ 70 (100)
Q Consensus 13 V~pGE~~~v~y~a~N~sd~~v~GqA--------vpsVsP~~A~~YF~KieCFCF~eQ~L~pgE~~~ 70 (100)
-.|||.+.+...+.|.|++.+...- +...+| +.|=+++ +-.-.++.+.||++..
T Consensus 32 Y~~Ge~I~v~v~i~N~s~~~v~~i~~~l~Q~~~~~~~s~---~~~~~~V-a~~e~~~~~~~~~t~~ 93 (211)
T d1cf1a2 32 YYHGEPIPVTVAVTNSTEKTVKKIKVLVEQVTNVVLYSS---DYYIKTV-AAEEAQEKVPPNSSLT 93 (211)
T ss_dssp EETTCCEEEEEEEEECSSSCEEEEEEEEEEEEEECSSSC---CEEEEEE-EEEEESCCBCTTEEEE
T ss_pred EcCCCEEEEEEEEEcCCCcceeeEEEEEEEEEEEEEecC---CceEEEE-EEEEecCccCCCcceE
Confidence 4699999999999999999988743 233333 3333333 3345566777887644
No 6
>d1cr5a2 d.31.1.1 (A:108-210) C-terminal domain of NSF-N, NSF-Nc {Baker's yeast (Saccharomyces cerevisiae), sec18p [TaxId: 4932]}
Probab=45.17 E-value=5.1 Score=25.26 Aligned_cols=24 Identities=25% Similarity=0.553 Sum_probs=20.9
Q ss_pred cchhhcccceeeeeccccccCCCCeeec
Q psy4837 44 FDAGQYFNKIQCFCFEEQQLNPHEELQI 71 (100)
Q Consensus 44 ~~A~~YF~KieCFCF~eQ~L~pgE~~~M 71 (100)
.+-|..|.+ ||+.|.|.||+.+-|
T Consensus 30 Dela~~F~~----~F~~Q~ft~gQ~l~f 53 (103)
T d1cr5a2 30 DELAKQFVR----CYESQIFSPTQYLIM 53 (103)
T ss_dssp HHHHHHHHH----HHTTCEECTTCEEEE
T ss_pred HHHHHHHHH----HhcCCCCCCCcEEEE
Confidence 566778876 799999999999988
No 7
>d1guia_ b.18.1.14 (A:) Carbohydrate binding module from laminarinase 16A {Thermotoga maritima [TaxId: 2336]}
Probab=43.94 E-value=20 Score=21.49 Aligned_cols=34 Identities=29% Similarity=0.263 Sum_probs=25.9
Q ss_pred EEEeecCCeEEEEEEEECCCCCcEEEEEeCcccc
Q psy4837 10 TLHVYPGETALAFYTAKNPTNSPIVGISTYNVVP 43 (100)
Q Consensus 10 ~v~V~pGE~~~v~y~a~N~sd~~v~GqAvpsVsP 43 (100)
.+.+.+|+.+++.|.++......+......+-.|
T Consensus 66 ~v~l~~g~~Y~lSf~~k~~~~~~~~~~~~~~~~~ 99 (155)
T d1guia_ 66 WIGLYRGKTYTISFKAKADTPRPINVKILQNHDP 99 (155)
T ss_dssp EEECCTTCEEEEEEEEEESSCEEEEEEEECSSTT
T ss_pred eeEecCCCEEEEEEEEEeCCCCcEEEEEEEcCCC
Confidence 5789999999999999987766665555554444
No 8
>d1fwxa1 b.6.1.4 (A:452-581) Nitrous oxide reductase, C-terminal domain {Paracoccus denitrificans [TaxId: 266]}
Probab=40.28 E-value=35 Score=21.26 Aligned_cols=31 Identities=16% Similarity=0.185 Sum_probs=22.5
Q ss_pred eEEEeecCCeEEEEEEEECCC--CCcEEEEEeCcc
Q psy4837 9 LTLHVYPGETALAFYTAKNPT--NSPIVGISTYNV 41 (100)
Q Consensus 9 ~~v~V~pGE~~~v~y~a~N~s--d~~v~GqAvpsV 41 (100)
..++|+.|+.+++. ++|.. ...+-|-+++..
T Consensus 52 ~~i~V~~Gd~V~~~--ltN~d~~~~v~H~~~i~~~ 84 (132)
T d1fwxa1 52 ESFTVKEGDEVTVI--VTNLDEIDDLTHGFTMGNY 84 (132)
T ss_dssp SEEEEETTCEEEEE--EEECCCSTTCCEEEEETTT
T ss_pred CEEEEcCCCEEEEE--EEcCCCCccceEeechhhh
Confidence 57899999987765 56655 346788887654
No 9
>d1gu3a_ b.18.1.14 (A:) Cellulose-binding domain of cellulase C {Cellulomonas fimi [TaxId: 1708]}
Probab=38.81 E-value=15 Score=22.19 Aligned_cols=32 Identities=22% Similarity=0.208 Sum_probs=25.4
Q ss_pred eceEEEeecCCeEEEEEEEECCCCCcEEEEEe
Q psy4837 7 YLLTLHVYPGETALAFYTAKNPTNSPIVGIST 38 (100)
Q Consensus 7 ~q~~v~V~pGE~~~v~y~a~N~sd~~v~GqAv 38 (100)
.|..+.+.+|+++++.|.|+....+.+.-+..
T Consensus 41 ~~~~~~l~~G~tY~lsf~ak~~~~~~~~~~~~ 72 (142)
T d1gu3a_ 41 VLNGVAIEEGTTYTLRYTATASTDVTVRALVG 72 (142)
T ss_dssp EEEEECBCTTCEEEEEEEEEESSCEECEEEEE
T ss_pred EEcceeecCCCEEEEEEEEEeCCCCCEEEEEE
Confidence 35568899999999999999887776655443
No 10
>d1qcsa2 d.31.1.1 (A:86-201) C-terminal domain of NSF-N, NSF-Nc {Hamster (Cricetulus griseus) [TaxId: 10029]}
Probab=36.70 E-value=6.9 Score=25.11 Aligned_cols=32 Identities=16% Similarity=0.188 Sum_probs=25.5
Q ss_pred cchhhcccceeeeeccccccCCCCeeec----------------cCCCCCCC
Q psy4837 44 FDAGQYFNKIQCFCFEEQQLNPHEELQI----------------FAPKKPHH 79 (100)
Q Consensus 44 ~~A~~YF~KieCFCF~eQ~L~pgE~~~M----------------vDP~i~~d 79 (100)
.+-|..|.+ ||+.|.|.||+..-| +|+.+.+.
T Consensus 30 Dela~~F~~----~F~~Qift~gQ~l~f~f~~~~l~l~Vk~v~~~D~~~~~~ 77 (116)
T d1qcsa2 30 DKMAAEFIQ----QFNNQAFSVGQQLVFSFNDKLFGLLVKDIEAMDPSILKG 77 (116)
T ss_dssp HHHHHHHHH----HHTTCEEETTCEEEEEETTEEEEEEEEEEEECCCCTTC-
T ss_pred HHHHHHHHH----HhCCCCcCCCcEEEEEeCCcEEEEEEEEEEEecchhccC
Confidence 556677766 789999999999988 88877764
No 11
>d1tyeb1 b.1.15.1 (B:58-106,B:355-440) Hybrid domain of integrin beta {Human (Homo sapiens) [TaxId: 9606]}
Probab=32.96 E-value=21 Score=23.05 Aligned_cols=26 Identities=8% Similarity=0.112 Sum_probs=21.6
Q ss_pred eeeceeceEEEeecCCeEEEEEEEEC
Q psy4837 2 ITTHRYLLTLHVYPGETALAFYTAKN 27 (100)
Q Consensus 2 ~~~~p~q~~v~V~pGE~~~v~y~a~N 27 (100)
+-+.|..-.++++||+.......++=
T Consensus 24 vQi~PQ~i~L~LRpG~~~~f~l~~r~ 49 (135)
T d1tyeb1 24 TQVSPQRIALRLRPDDSKNFSIQVRQ 49 (135)
T ss_dssp CCBSCSEEEEEECTTCEEEEEEEEEC
T ss_pred EEEeceEEEEEeCCCCcEEEEEEEEE
Confidence 34678899999999999988877764
No 12
>d1g4ma2 b.1.18.11 (A:176-393) Arrestin {Cow (Bos taurus), beta-arrestin 1 [TaxId: 9913]}
Probab=29.12 E-value=37 Score=22.72 Aligned_cols=26 Identities=27% Similarity=0.263 Sum_probs=22.5
Q ss_pred EeecCCeEEEEEEEECCCCCcEEEEE
Q psy4837 12 HVYPGETALAFYTAKNPTNSPIVGIS 37 (100)
Q Consensus 12 ~V~pGE~~~v~y~a~N~sd~~v~GqA 37 (100)
--.|||.+.+.-.+.|.|++.+.+..
T Consensus 32 ~y~~Ge~I~v~v~i~N~s~~~v~~i~ 57 (218)
T d1g4ma2 32 IYYHGEPISVNVHVTNNTNKTVKKIK 57 (218)
T ss_dssp EEETTCCEEEEEEEEECSSCCEEEEE
T ss_pred eEcCCCEEEEEEEEECCCCCEEeeEE
Confidence 34699999999999999999988743
No 13
>d3es6b1 b.1.18.23 (B:1-118) Prolactin-inducible protein, PIP {Human (Homo sapiens) [TaxId: 9606]}
Probab=26.23 E-value=65 Score=19.47 Aligned_cols=46 Identities=15% Similarity=0.218 Sum_probs=33.6
Q ss_pred EeecCCeEEEEEEEECCCCCcEEEEEeCcccccchhh-cccceeeee
Q psy4837 12 HVYPGETALAFYTAKNPTNSPIVGISTYNVVPFDAGQ-YFNKIQCFC 57 (100)
Q Consensus 12 ~V~pGE~~~v~y~a~N~sd~~v~GqAvpsVsP~~A~~-YF~KieCFC 57 (100)
.+..||...+.-.+.|..++.+.+++.-.-+....+. =..+.-|-|
T Consensus 17 sv~rge~~~i~~~V~Nyl~~~~~v~v~L~~s~~~~~~~~~~~~~cv~ 63 (118)
T d3es6b1 17 SVRPNDEVTAVLAVQTELKECMVVKTYLISSIPLQGAFNYKYTACLC 63 (118)
T ss_dssp EECSSCCEEEEEEEEECCSSCEEEEEEEEESSCCCSGGGCEEEEEEC
T ss_pred eEecCCEEEEEEEEEECccceEEEEEEEecCCCEEccCCCCcceEEC
Confidence 4789999999999999999999999987544432222 124455655
No 14
>d2vn6a1 b.2.2.2 (A:12-152) Cohesin domain {Clostridium cellulolyticum [TaxId: 1521]}
Probab=26.02 E-value=48 Score=20.16 Aligned_cols=32 Identities=16% Similarity=0.032 Sum_probs=25.1
Q ss_pred eceeceEEEeecCCeEEEEEEEECCCC-CcEEE
Q psy4837 4 THRYLLTLHVYPGETALAFYTAKNPTN-SPIVG 35 (100)
Q Consensus 4 ~~p~q~~v~V~pGE~~~v~y~a~N~sd-~~v~G 35 (100)
++..-.++...+|++..|--++.|..+ +.+.|
T Consensus 2 ~~~~i~~~s~~~G~tV~V~V~~~~v~~~~~i~~ 34 (141)
T d2vn6a1 2 LKVTVGTANGKPGDTVTVPVTFADVAKMKNVGT 34 (141)
T ss_dssp EEEEECEEEECTTCEEEEEEEEESTTTTTCBCE
T ss_pred EEEEeCcEEeCCCCEEEEEEEEEccCCCCceEE
Confidence 445567789999999999999999754 55544
No 15
>d1cx1a_ b.18.1.14 (A:) Cellulose-binding domain of cellulase C {Cellulomonas fimi [TaxId: 1708]}
Probab=25.87 E-value=30 Score=20.75 Aligned_cols=32 Identities=19% Similarity=0.196 Sum_probs=23.5
Q ss_pred eceEEEeecCCeEEEEEEEECCCCCcEEEEEe
Q psy4837 7 YLLTLHVYPGETALAFYTAKNPTNSPIVGIST 38 (100)
Q Consensus 7 ~q~~v~V~pGE~~~v~y~a~N~sd~~v~GqAv 38 (100)
.|+.+.+.+|+.+++.|.|+-..++.+..+.-
T Consensus 54 ~~~~v~l~~G~~Y~lsf~aka~~~~~~~v~v~ 85 (153)
T d1cx1a_ 54 VYNGVPVGEGESYVLSFTASATPDMPVRVLVG 85 (153)
T ss_dssp EECCCCBCTTSEEEEEEEEEESSCEEEEEEEE
T ss_pred EecceEEcCCCEEEEEEEEEECCCceEEEEEe
Confidence 35568899999999999999665555444333
No 16
>d2bw4a1 b.6.1.3 (A:8-164) Nitrite reductase, NIR {Alcaligenes xylosoxidans [TaxId: 85698]}
Probab=25.71 E-value=52 Score=20.90 Aligned_cols=50 Identities=20% Similarity=0.198 Sum_probs=28.7
Q ss_pred EEEeecCCeEEEEEEEECCCCCc-EEEEEeCcccccchhhcccceeeeeccccccCCCCeeec
Q psy4837 10 TLHVYPGETALAFYTAKNPTNSP-IVGISTYNVVPFDAGQYFNKIQCFCFEEQQLNPHEELQI 71 (100)
Q Consensus 10 ~v~V~pGE~~~v~y~a~N~sd~~-v~GqAvpsVsP~~A~~YF~KieCFCF~eQ~L~pgE~~~M 71 (100)
.++|+.|+..++.+. |..... ..|.-.....-+..+..+. .++|||+...
T Consensus 65 ~I~v~~GD~V~i~l~--N~~~~~~~Hg~~~h~~~~~~~~~~~~----------~i~PGet~ty 115 (157)
T d2bw4a1 65 LMVVHENDYVELRLI--NPDTNTLLHNIDFHAATGALGGGALT----------QVNPGEETTL 115 (157)
T ss_dssp EEEEETTCEEEEEEE--ECTTCCSCBCCEETTSCSGGGGGGGC----------CBCTTEEEEE
T ss_pred eEEEECCcEEEEEEE--eCCCCcceEeeeecccCCCcCCccee----------eECcCCEEeE
Confidence 489999999888875 643322 1233333322223333332 3789998877
No 17
>d1vjja2 b.1.5.1 (A:479-593) Transglutaminase, two C-terminal domains {Human (Homo sapiens), TGase E3 [TaxId: 9606]}
Probab=25.40 E-value=32 Score=20.98 Aligned_cols=56 Identities=14% Similarity=0.121 Sum_probs=37.9
Q ss_pred EeecCCeEEEEEEEECCCCCcEEEEEeCcccccchhhcccc-eeeeecc---ccccCCCCeeec
Q psy4837 12 HVYPGETALAFYTAKNPTNSPIVGISTYNVVPFDAGQYFNK-IQCFCFE---EQQLNPHEELQI 71 (100)
Q Consensus 12 ~V~pGE~~~v~y~a~N~sd~~v~GqAvpsVsP~~A~~YF~K-ieCFCF~---eQ~L~pgE~~~M 71 (100)
.+..|+-..+.-.++|.+++.-+.++..+.. +.||+- .-=.|.. .-+|+||++..+
T Consensus 13 ~~~iG~Df~v~l~~~N~s~~~~~v~l~l~a~----av~YtG~~~~~~~~~~~~v~L~p~~~~~v 72 (115)
T d1vjja2 13 MLAVGKEVNLVLLLKNLSRDTKTVTVNMTAW----TIIYNGTLVHEVWKDSATMSLDPEEEAEH 72 (115)
T ss_dssp CCBTTSCEEEEEEEEECSSSCEEEEEEEEEE----EECTTCCEEEEEEEEEEEEEECTTCEEEE
T ss_pred CCCCCCCEEEEEEEEECCCCCEEEEEEEEEE----EEEeCCcCchheEEeeEEEEECCCCeEEE
Confidence 5678999999999999999998887766543 222221 1111111 247999998877
No 18
>d1ex0a2 b.1.5.1 (A:516-627) Transglutaminase, two C-terminal domains {Human (Homo sapiens), blood isozyme [TaxId: 9606]}
Probab=24.12 E-value=35 Score=20.70 Aligned_cols=56 Identities=14% Similarity=0.020 Sum_probs=37.6
Q ss_pred EeecCCeEEEEEEEECCCCCcEEEEEeCcccc----cchhhcccceeeeeccccccCCCCeeec
Q psy4837 12 HVYPGETALAFYTAKNPTNSPIVGISTYNVVP----FDAGQYFNKIQCFCFEEQQLNPHEELQI 71 (100)
Q Consensus 12 ~V~pGE~~~v~y~a~N~sd~~v~GqAvpsVsP----~~A~~YF~KieCFCF~eQ~L~pgE~~~M 71 (100)
.+..|+-..+.=.++|.|++.-+.++..+..= +..+.-|.|.. + .-+|+|||+...
T Consensus 11 ~~~iG~df~v~i~~~N~s~~~~~v~l~l~a~~v~YtG~~~~~~~~~~-~---~v~L~p~~~~~v 70 (112)
T d1ex0a2 11 NAVLGKDFKLSITFRNNSHNRYTITAYLSANITFYTGVPKAEFKKET-F---DVTLEPLSFKKE 70 (112)
T ss_dssp CCBTTCCEEEEEEEEECSSSCEEEEEEEEEEEECTTSCEEEEEEEEE-E---EEEECTTEEEEE
T ss_pred CcccCCCEEEEEEEEECCCCCEEEEEEEEEEEEEeCCcCchheEEee-E---EEEECCCCEEEE
Confidence 36699999999999999999988887766532 11111121111 1 147899998777
No 19
>d1ppjg_ f.23.13.1 (G:) Ubiquinone-binding protein QP-C of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase) {Cow (Bos taurus) [TaxId: 9913]}
Probab=23.69 E-value=13 Score=22.36 Aligned_cols=14 Identities=29% Similarity=0.700 Sum_probs=12.0
Q ss_pred cEEEEEeCcccccc
Q psy4837 32 PIVGISTYNVVPFD 45 (100)
Q Consensus 32 ~v~GqAvpsVsP~~ 45 (100)
.+.|+.+|++||.+
T Consensus 9 k~rgiitYsLSPfe 22 (75)
T d1ppjg_ 9 RVRHVITYSLSPFE 22 (75)
T ss_dssp CCEEEEEEEECGGG
T ss_pred eeccEEEEEeChhh
Confidence 48899999999954
No 20
>d2q3za2 b.1.5.1 (A:472-585) Transglutaminase, two C-terminal domains {Human (Homo sapiens), tissue isozyme [TaxId: 9606]}
Probab=23.19 E-value=37 Score=20.68 Aligned_cols=65 Identities=18% Similarity=0.145 Sum_probs=46.2
Q ss_pred EeecCCeEEEEEEEECCCCCcEEEEEeCcccccchhhcccce---eeeecc--ccccCCCCeeec--------cCCCCCC
Q psy4837 12 HVYPGETALAFYTAKNPTNSPIVGISTYNVVPFDAGQYFNKI---QCFCFE--EQQLNPHEELQI--------FAPKKPH 78 (100)
Q Consensus 12 ~V~pGE~~~v~y~a~N~sd~~v~GqAvpsVsP~~A~~YF~Ki---eCFCF~--eQ~L~pgE~~~M--------vDP~i~~ 78 (100)
.+..|+-..+.-.++|.|+++-+.++..+. .+-||+-. +|-.-+ .-+|+|||+..+ --+.|.+
T Consensus 11 ~~~iG~Df~v~~~~~N~s~~~~~v~l~l~a----~~v~YtG~~~~~~~~k~~~~v~L~p~~~~~v~~~v~y~~Y~~~L~d 86 (114)
T d2q3za2 11 SMNMGSDFDVFAHITNNTAEEYVCRLLLCA----RTVSYNGILGPECGTKYLLNLTLEPFSEKSVPLCILYEKYRDCLTE 86 (114)
T ss_dssp CCBTTCCEEEEEEEEECSSSCEEEEEEEEE----EEECTTCCEEEEEEEEEEEEEEECTTEEEEEEEEECHHHHTTTCCT
T ss_pred CCcCCCCEEEEEEEEeCCCCCEEEEEEEEE----EEEEeCCcCcceeEEecceEEEECCCCEEEEEEEEcHHHhhccccc
Confidence 356899999999999999999888887654 35566544 343322 237999998887 3455665
Q ss_pred CC
Q psy4837 79 HN 80 (100)
Q Consensus 79 d~ 80 (100)
++
T Consensus 87 ~~ 88 (114)
T d2q3za2 87 SN 88 (114)
T ss_dssp TC
T ss_pred CC
Confidence 53
No 21
>d1fnla1 b.1.1.4 (A:3-86) Fc gamma receptor ectodomain (CD32) {Human (Homo sapiens), III [TaxId: 9606]}
Probab=21.85 E-value=24 Score=19.47 Aligned_cols=47 Identities=9% Similarity=0.010 Sum_probs=27.5
Q ss_pred eeeceeceEEEeecCCeEEEEEEEECCCCCc-EE-------------EEEeCcccccchhhcc
Q psy4837 2 ITTHRYLLTLHVYPGETALAFYTAKNPTNSP-IV-------------GISTYNVVPFDAGQYF 50 (100)
Q Consensus 2 ~~~~p~q~~v~V~pGE~~~v~y~a~N~sd~~-v~-------------GqAvpsVsP~~A~~YF 50 (100)
|+++|.. ..|..||.+++.=.+....... .. --.+.++++..+|.|.
T Consensus 8 i~~~P~~--~~v~~G~~vtL~C~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~ 68 (84)
T d1fnla1 8 VFLEPQW--YSVLEKDSVTLKCQGAYSPEDNSTQWFHNESLISSQASSYFIDAATVNDSGEYR 68 (84)
T ss_dssp EEEESCC--SEEETTCCEEEEEECCCBTTBCCCEEEETTEEEESSCSEEEESSCCGGGCEEEE
T ss_pred EEECCCC--cEEeCCCeEEEEEEeccCCCCeEEEEeeeceeeeecceeeEecCCcccCCEEEE
Confidence 5666643 4456688777655443322111 00 1257888999999987
No 22
>d1ujya_ b.34.2.1 (A:) Rac/CDC42 GEF 6 {Human (Homo sapiens) [TaxId: 9606]}
Probab=20.02 E-value=65 Score=17.99 Aligned_cols=34 Identities=6% Similarity=0.126 Sum_probs=27.1
Q ss_pred CCCCcEEEEEeCcccccchhhcccceeeeeccccccCCCCeeeccC
Q psy4837 28 PTNSPIVGISTYNVVPFDAGQYFNKIQCFCFEEQQLNPHEELQIFA 73 (100)
Q Consensus 28 ~sd~~v~GqAvpsVsP~~A~~YF~KieCFCF~eQ~L~pgE~~~MvD 73 (100)
....++..+|.|...|... +|-.|+.|+.+.+++
T Consensus 6 ~g~~~~~~rAlydy~a~~~------------~eLs~~~Gd~i~v~~ 39 (76)
T d1ujya_ 6 SGSHQLIVKARFNFKQTNE------------DELSVCKGDIIYVTR 39 (76)
T ss_dssp CSCCCEEEECCSCBCCSST------------TSCCBCSSCCEEESS
T ss_pred CCCCCEEEEECccCCCCCC------------CCccCCCCCEEEEeE
Confidence 4456788999999998654 378899999998865
Done!