RPS-BLAST 2.2.26 [Sep-21-2011]

Database: pdb70 
           27,921 sequences; 6,701,793 total letters

Searching..................................................done

Query= psy4837
         (100 letters)



>1so9_A Cytochrome C oxidase assembly protein CTAG; immunoglobulin-like
           fold, copper protein, structural proteomics in europe,
           spine; NMR {Sinorhizobium meliloti} SCOP: b.146.1.1 PDB:
           1sp0_A
          Length = 164

 Score = 67.2 bits (163), Expect = 1e-15
 Identities = 30/62 (48%), Positives = 39/62 (62%)

Query: 10  TLHVYPGETALAFYTAKNPTNSPIVGISTYNVVPFDAGQYFNKIQCFCFEEQQLNPHEEL 69
            + V  GET    Y AKN  ++P  G +T+NV P  AG YFNK+QCFCF E  L P EE+
Sbjct: 55  DIDVRIGETVQIMYRAKNLASTPTTGQATFNVTPMAAGAYFNKVQCFCFTETTLEPGEEM 114

Query: 70  QI 71
           ++
Sbjct: 115 EM 116


>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
          photosynthetic reaction center, peripheral antenna;
          HET: CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
          Length = 154

 Score = 29.9 bits (66), Expect = 0.078
 Identities = 6/21 (28%), Positives = 11/21 (52%), Gaps = 2/21 (9%)

Query: 59 EEQQLNPHE-ELQIFAPKK-P 77
          E+Q L   +  L+++A    P
Sbjct: 18 EKQALKKLQASLKLYADDSAP 38



 Score = 27.6 bits (60), Expect = 0.59
 Identities = 4/21 (19%), Positives = 9/21 (42%), Gaps = 3/21 (14%)

Query: 17 ETALAFYTAKNPTNSPIVGIS 37
          + +L  Y      ++P + I 
Sbjct: 26 QASLKLYA---DDSAPALAIK 43


>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
           programmed cell death; HET: DTP; 6.90A {Drosophila
           melanogaster} PDB: 3iz8_A*
          Length = 1221

 Score = 28.3 bits (62), Expect = 0.41
 Identities = 18/109 (16%), Positives = 32/109 (29%), Gaps = 30/109 (27%)

Query: 1   MITTHRY---LLTL-HVYPGETALAF-------YTAKNPTNSPIVGISTYNVVPFDAGQY 49
           ++ +  Y   LL L +V   +   AF        T +    +  +  +T   +  D    
Sbjct: 237 LLKSKPYENCLLVLLNVQNAKAWNAFNLSCKILLTTRFKQVTDFLSAATTTHISLD---- 292

Query: 50  FNKIQCFCFEEQQLNPHEELQIFAPKKPHHNEHKMRSQILPKVEIANVS 98
                        L P E   +             R Q LP+ E+   +
Sbjct: 293 --------HHSMTLTPDEVKSLLL------KYLDCRPQDLPR-EVLTTN 326


>1ynp_A Oxidoreductase, AKR11C1; aldo-keto reductase, NADPH; HET: SUC;
           1.25A {Bacillus halodurans} PDB: 1ynq_A*
          Length = 317

 Score = 24.8 bits (55), Expect = 5.7
 Identities = 6/24 (25%), Positives = 10/24 (41%)

Query: 15  PGETALAFYTAKNPTNSPIVGIST 38
             E AL +  A +   +   G S+
Sbjct: 256 LHELALQYCLAHDVVATVAAGASS 279


>1pz1_A GSP69, general stress protein 69; beta-alpha barrel, aldo-keto
           reductase, TIM barrel, oxidoreductase; HET: NAP; 2.20A
           {Bacillus subtilis} SCOP: c.1.7.1
          Length = 333

 Score = 24.4 bits (54), Expect = 6.8
 Identities = 2/21 (9%), Positives = 7/21 (33%)

Query: 15  PGETALAFYTAKNPTNSPIVG 35
               A+ +   +   +  + G
Sbjct: 260 VIHLAVRWILDQPGADIALWG 280


  Database: pdb70
    Posted date:  Sep 4, 2012  3:40 AM
  Number of letters in database: 6,701,793
  Number of sequences in database:  27,921
  
Lambda     K      H
   0.320    0.134    0.408 

Gapped
Lambda     K      H
   0.267   0.0675    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 1,509,705
Number of extensions: 73614
Number of successful extensions: 143
Number of sequences better than 10.0: 1
Number of HSP's gapped: 143
Number of HSP's successfully gapped: 15
Length of query: 100
Length of database: 6,701,793
Length adjustment: 66
Effective length of query: 34
Effective length of database: 4,859,007
Effective search space: 165206238
Effective search space used: 165206238
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 51 (23.5 bits)