RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy4837
         (100 letters)



>d1so9a_ b.146.1.1 (A:) Cytochrome C oxidase assembly protein CtaG
          {Rhizobium meliloti (Sinorhizobium meliloti) [TaxId:
          382]}
          Length = 131

 Score = 79.9 bits (197), Expect = 2e-21
 Identities = 30/61 (49%), Positives = 38/61 (62%)

Query: 10 TLHVYPGETALAFYTAKNPTNSPIVGISTYNVVPFDAGQYFNKIQCFCFEEQQLNPHEEL 69
           + V  GET    Y AKN  ++P  G +T+NV P  AG YFNK+QCFCF E  L P EE+
Sbjct: 35 DIDVRIGETVQIMYRAKNLASTPTTGQATFNVTPMAAGAYFNKVQCFCFTETTLEPGEEM 94

Query: 70 Q 70
          +
Sbjct: 95 E 95


>g1pvc.1 b.121.4.1 (4:,2:) Poliovirus coat proteins {Poliovirus type
           3, strain Sabin [TaxId: 12086]}
          Length = 334

 Score = 25.9 bits (57), Expect = 0.85
 Identities = 14/63 (22%), Positives = 21/63 (33%)

Query: 3   TTHRYLLTLHVYPGETALAFYTAKNPTNSPIVGISTYNVVPFDAGQYFNKIQCFCFEEQQ 62
              RY    +  PGE    FY+  N  N+       +  V +  G        F +  Q 
Sbjct: 200 DKQRYTSYANANPGERGGKFYSQFNKDNAVTSPKREFCPVDYLLGCGVLLGNAFVYPHQI 259

Query: 63  LNP 65
           +N 
Sbjct: 260 INL 262


>d1pyfa_ c.1.7.1 (A:) Putative oxidoreductase IolS {Bacillus
           subtilis [TaxId: 1423]}
          Length = 311

 Score = 23.4 bits (49), Expect = 7.4
 Identities = 6/24 (25%), Positives = 9/24 (37%)

Query: 15  PGETALAFYTAKNPTNSPIVGIST 38
                LA+Y A+   +  I G   
Sbjct: 258 IPHIVLAWYLARPEIDILIPGAKR 281


>d1lqaa_ c.1.7.1 (A:) Tas protein {Escherichia coli [TaxId: 562]}
          Length = 346

 Score = 23.0 bits (48), Expect = 9.3
 Identities = 8/24 (33%), Positives = 13/24 (54%)

Query: 15  PGETALAFYTAKNPTNSPIVGIST 38
           P + ALAF   +    S ++G +T
Sbjct: 288 PAQMALAFVRRQPFVASTLLGATT 311


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.320    0.134    0.408 

Gapped
Lambda     K      H
   0.267   0.0635    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 370,904
Number of extensions: 14653
Number of successful extensions: 32
Number of sequences better than 10.0: 1
Number of HSP's gapped: 32
Number of HSP's successfully gapped: 8
Length of query: 100
Length of database: 2,407,596
Length adjustment: 62
Effective length of query: 38
Effective length of database: 1,556,336
Effective search space: 59140768
Effective search space used: 59140768
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 47 (22.1 bits)