BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy484
(195 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2I1A|A Chain A, A Retroviral Protease-Like Domain In The Eukaryotic
Protein Ddi1
pdb|2I1A|B Chain B, A Retroviral Protease-Like Domain In The Eukaryotic
Protein Ddi1
pdb|2I1A|C Chain C, A Retroviral Protease-Like Domain In The Eukaryotic
Protein Ddi1
pdb|2I1A|D Chain D, A Retroviral Protease-Like Domain In The Eukaryotic
Protein Ddi1
Length = 148
Score = 30.0 bits (66), Expect = 0.83, Method: Compositional matrix adjust.
Identities = 11/28 (39%), Positives = 18/28 (64%)
Query: 153 TGLSHLIKPEWINEGKGGSTNQMIGKFY 180
TGLS +I +I E +G T ++IG+ +
Sbjct: 59 TGLSRMIDKRFIGEARGVGTGKIIGRIH 86
>pdb|2VKZ|G Chain G, Structure Of The Cerulenin-Inhibited Fungal Fatty Acid
Synthase Type I Multienzyme Complex
pdb|2VKZ|H Chain H, Structure Of The Cerulenin-Inhibited Fungal Fatty Acid
Synthase Type I Multienzyme Complex
pdb|2VKZ|I Chain I, Structure Of The Cerulenin-Inhibited Fungal Fatty Acid
Synthase Type I Multienzyme Complex
pdb|3HMJ|G Chain G, Saccharomyces Cerevisiae Fas Type I
pdb|3HMJ|H Chain H, Saccharomyces Cerevisiae Fas Type I
pdb|3HMJ|I Chain I, Saccharomyces Cerevisiae Fas Type I
pdb|2UV8|G Chain G, Crystal Structure Of Yeast Fatty Acid Synthase With Stalled
Acyl Carrier Protein At 3.1 Angstrom Resolution
pdb|2UV8|H Chain H, Crystal Structure Of Yeast Fatty Acid Synthase With Stalled
Acyl Carrier Protein At 3.1 Angstrom Resolution
pdb|2UV8|I Chain I, Crystal Structure Of Yeast Fatty Acid Synthase With Stalled
Acyl Carrier Protein At 3.1 Angstrom Resolution
Length = 2051
Score = 29.3 bits (64), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 37/128 (28%), Positives = 52/128 (40%), Gaps = 14/128 (10%)
Query: 63 YNSLPNTI-HRALSSAILRKYRPLAATKSTSRRATFEEFVLYLLDTFRSNETGLDMHWAP 121
Y +LP TI H SSA +R A S S R + +D N T L
Sbjct: 1572 YANLPGTITHGMFSSASVRALIENWAADSVSSRV--RGYTCQFVDMVLPN-TALKTSIQH 1628
Query: 122 VVQFCTPCLINFNVILKFETLQEDQRYLIELTGLSHLIKP--EWINEGKGGSTNQMIGKF 179
V +IN ++KFET ED ++ LTG + + +P ++ G+G M
Sbjct: 1629 V------GMINGRKLIKFETRNEDD--VVVLTGEAEIEQPVTTFVFTGQGSQEQGMGMDL 1680
Query: 180 YSELSADQ 187
Y A Q
Sbjct: 1681 YKTSKAAQ 1688
>pdb|4DDG|A Chain A, Crystal Structure Of Human Otub1UBCH5B~UBUB
pdb|4DDG|B Chain B, Crystal Structure Of Human Otub1UBCH5B~UBUB
pdb|4DDG|C Chain C, Crystal Structure Of Human Otub1UBCH5B~UBUB
pdb|4DDG|J Chain J, Crystal Structure Of Human Otub1UBCH5B~UBUB
pdb|4DDG|K Chain K, Crystal Structure Of Human Otub1UBCH5B~UBUB
pdb|4DDG|L Chain L, Crystal Structure Of Human Otub1UBCH5B~UBUB
pdb|4DDI|A Chain A, Crystal Structure Of Human Otub1UBCH5B~UBUB
pdb|4DDI|B Chain B, Crystal Structure Of Human Otub1UBCH5B~UBUB
pdb|4DDI|C Chain C, Crystal Structure Of Human Otub1UBCH5B~UBUB
Length = 399
Score = 27.7 bits (60), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 18/51 (35%), Positives = 30/51 (58%), Gaps = 4/51 (7%)
Query: 143 QEDQRYLIELT-GLSHLIKPEWINEGKGGSTNQMIGKFYSELSADQLYQLY 192
+ D ++I L LS I+ E+++ G+GG+TN I + E S ++Y LY
Sbjct: 342 ESDHIHIIALAQALSVSIQVEYMDRGEGGTTNPHI---FPEGSEPKVYLLY 389
>pdb|3VON|A Chain A, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|H Chain H, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|O Chain O, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|V Chain V, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|CC Chain c, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|JJ Chain j, Crystalstructure Of The Ubiquitin Protease
Length = 228
Score = 26.9 bits (58), Expect = 7.0, Method: Compositional matrix adjust.
Identities = 18/51 (35%), Positives = 30/51 (58%), Gaps = 4/51 (7%)
Query: 143 QEDQRYLIELT-GLSHLIKPEWINEGKGGSTNQMIGKFYSELSADQLYQLY 192
+ D ++I L LS I+ E+++ G+GG+TN I + E S ++Y LY
Sbjct: 171 ESDHIHIIALAQALSVSIQVEYMDRGEGGTTNPHI---FPEGSEPKVYLLY 218
>pdb|2Q5T|A Chain A, Full-Length Cholix Toxin From Vibrio Cholerae
pdb|3Q9O|A Chain A, Full-Length Cholix Toxin From Vibrio Cholerae In Complex
With Nad
Length = 642
Score = 26.9 bits (58), Expect = 7.1, Method: Compositional matrix adjust.
Identities = 26/96 (27%), Positives = 39/96 (40%), Gaps = 2/96 (2%)
Query: 10 RQSQAPVLSLARRKYPRPSLHDLESAISAPSSVS-FVIVRHPFERLLSAYRDKIYNSLPN 68
R P+ +LAR + PR DL A A + VS FV R F L S + + P
Sbjct: 284 RVCGVPLETLARSRKPRDLTDDLSCAYQAQNIVSLFVATRILFSHLDSVFTLNLDEQEPE 343
Query: 69 TIHRALSSAILRKYRPLAATKS-TSRRATFEEFVLY 103
R + + P T+ T R + ++V +
Sbjct: 344 VAERLSDLRRINENNPGMVTQVLTVARQIYNDYVTH 379
>pdb|2ZFY|A Chain A, Crystal Structure Of Human Otubain 1
Length = 234
Score = 26.9 bits (58), Expect = 7.2, Method: Compositional matrix adjust.
Identities = 18/51 (35%), Positives = 30/51 (58%), Gaps = 4/51 (7%)
Query: 143 QEDQRYLIELT-GLSHLIKPEWINEGKGGSTNQMIGKFYSELSADQLYQLY 192
+ D ++I L LS I+ E+++ G+GG+TN I + E S ++Y LY
Sbjct: 177 ESDHIHIIALAQALSVSIQVEYMDRGEGGTTNPHI---FPEGSEPKVYLLY 224
>pdb|4I6L|A Chain A, Crystal Structure Of Otub1 In Complex With Ubiquitin
Variant
Length = 229
Score = 26.9 bits (58), Expect = 7.7, Method: Compositional matrix adjust.
Identities = 18/51 (35%), Positives = 30/51 (58%), Gaps = 4/51 (7%)
Query: 143 QEDQRYLIELT-GLSHLIKPEWINEGKGGSTNQMIGKFYSELSADQLYQLY 192
+ D ++I L LS I+ E+++ G+GG+TN I + E S ++Y LY
Sbjct: 172 ESDHIHIIALAQALSVSIQVEYMDRGEGGTTNPHI---FPEGSEPKVYLLY 219
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.322 0.135 0.397
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,455,981
Number of Sequences: 62578
Number of extensions: 201960
Number of successful extensions: 361
Number of sequences better than 100.0: 8
Number of HSP's better than 100.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 7
Number of HSP's that attempted gapping in prelim test: 360
Number of HSP's gapped (non-prelim): 8
length of query: 195
length of database: 14,973,337
effective HSP length: 94
effective length of query: 101
effective length of database: 9,091,005
effective search space: 918191505
effective search space used: 918191505
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 49 (23.5 bits)