Query psy484
Match_columns 195
No_of_seqs 131 out of 480
Neff 7.4
Searched_HMMs 46136
Date Fri Aug 16 19:05:03 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy484.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/484hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF03567 Sulfotransfer_2: Sulf 99.9 4.7E-23 1E-27 168.6 1.2 117 33-155 73-192 (253)
2 KOG4651|consensus 99.8 3.9E-22 8.5E-27 172.2 4.6 160 34-195 142-305 (324)
3 PLN02164 sulfotransferase 95.0 0.056 1.2E-06 47.6 6.0 88 40-156 165-260 (346)
4 PF00685 Sulfotransfer_1: Sulf 91.8 0.32 7E-06 39.4 4.9 88 40-156 104-197 (267)
5 KOG1584|consensus 88.2 0.87 1.9E-05 39.3 4.7 105 19-156 106-216 (297)
6 KOG3922|consensus 86.1 1.6 3.4E-05 38.0 5.0 85 45-149 165-268 (361)
7 PF06990 Gal-3-0_sulfotr: Gala 84.4 1.1 2.4E-05 40.3 3.5 36 24-60 133-168 (402)
8 KOG3704|consensus 68.9 5 0.00011 34.5 3.0 26 39-64 189-214 (360)
9 COG2921 Uncharacterized conser 54.3 19 0.00041 25.5 3.3 64 127-193 12-78 (90)
10 PF00036 EF-hand_1: EF hand; 34.8 40 0.00087 18.3 2.0 24 77-105 4-27 (29)
11 PF07380 Pneumo_M2: Pneumoviru 33.1 38 0.00083 23.5 2.1 30 112-159 53-82 (89)
12 PRK04998 hypothetical protein; 29.7 80 0.0017 21.9 3.4 27 127-153 12-39 (88)
13 PF09037 Sulphotransf: Stf0 su 29.6 66 0.0014 26.8 3.4 106 32-159 107-219 (245)
14 PF13469 Sulfotransfer_3: Sulf 27.1 52 0.0011 24.8 2.3 20 42-61 129-148 (215)
15 PRK02047 hypothetical protein; 25.9 1E+02 0.0022 21.7 3.4 27 127-153 13-40 (91)
16 PF10364 NKWYS: Putative capsu 25.6 2.1E+02 0.0044 22.1 5.2 57 136-193 72-130 (141)
17 PRK00341 hypothetical protein; 24.3 1.2E+02 0.0027 21.3 3.6 28 127-154 13-42 (91)
18 PF13833 EF-hand_8: EF-hand do 23.4 53 0.0011 19.9 1.4 27 75-106 27-53 (54)
19 PF09279 EF-hand_like: Phospho 22.7 32 0.00069 23.2 0.2 35 73-108 37-71 (83)
20 cd05022 S-100A13 S-100A13: S-1 22.5 82 0.0018 22.0 2.3 18 90-107 59-76 (89)
21 PF06757 Ins_allergen_rp: Inse 22.3 1.9E+02 0.0042 22.6 4.7 48 146-193 77-124 (179)
22 PF07443 HARP: HepA-related pr 21.4 72 0.0016 20.5 1.7 16 1-17 5-20 (55)
23 PF10413 Rhodopsin_N: Amino te 20.3 24 0.00053 20.5 -0.6 7 46-52 18-24 (36)
No 1
>PF03567 Sulfotransfer_2: Sulfotransferase family; InterPro: IPR005331 This entry consists of a number of carbohydrate sulphotransferases that transfer sulphate to carbohydrate groups in glycoproteins and glycolipids. These include: Carbohydrate sulphotransferases 8 and 9, which transfer sulphate to position 4 of non-reducing N-acetylgalactosamine (GalNAc) residues in both N-glycans and O-glycans []. They function in the biosynthesis of glycoprotein hormones lutropin and thyrotropin, by mediating sulphation of their carbohydrate structures. Carbohydrate sulphotransferase 10, which transfers sulphate to position 3 of the terminal glucuronic acid in both protein- and lipid-linked oligosaccharides []. It directs the biosynthesis of the HNK-1 carbohydrate structure, a sulphated glucuronyl-lactosaminyl residue carried by many neural recognition molecules, which is involved in cell interactions during ontogenetic development and in synaptic plasticity in the adult. Carbohydrate sulphotransferases 11 - 13, which catalyze the transfer of sulphate to position 4 of the GalNAc residue of chondroitin []. Chondroitin sulphate constitutes the predominant proteoglycan present in cartilage and is distributed on the surfaces of many cells and extracellular matrices. Some, thought not all, of these enzymes also transfer sulphate to dermatan. Carbohydrate sulphotransferase D4ST1, which transfers sulphate to position 4 of the GalNAc residue of dermatan sulphate []. Heparan sulphate 2-O-sulphotransferase (HS2ST). Heparan sulphate (HS) is a co-receptor for a number of growth factors, morphogens, and adhesion proteins. HS biosynthetic modifications may determine the strength and outcome of HS-ligand interactions. Mice that lack HS2ST undergo developmental failure only after midgestation,the most dramatic effect being the complete failure of kidney development []. Heparan-sulphate 6-O-sulphotransferase (HS6ST), which catalyses the transfer of sulphate from adenosine 3'-phosphate, 5'-phosphosulphate to the 6th position of the N -sulphoglucosamine residue in heparan sulphate []. Chondroitin 6-sulphotransferase catalyses the transfer of sulphate to position 6 of the N-acetylgalactosamine residue of chondroitin []. ; GO: 0008146 sulfotransferase activity, 0016021 integral to membrane; PDB: 3F5F_A.
Probab=99.86 E-value=4.7e-23 Score=168.59 Aligned_cols=117 Identities=32% Similarity=0.592 Sum_probs=69.3
Q ss_pred HHhhcCCCceEEEEecCchhhhHhHHHHHhhccCCchhhHhh-HHHHHHHhCCc--cccCCCCCCCCHHHHHHHHhcccC
Q psy484 33 ESAISAPSSVSFVIVRHPFERLLSAYRDKIYNSLPNTIHRAL-SSAILRKYRPL--AATKSTSRRATFEEFVLYLLDTFR 109 (195)
Q Consensus 33 ~~~l~~~~y~kf~~VRnP~~RlvSay~dK~~~~~~~~~~~~~-~~~i~~~y~~~--~~~~~~~~~~sF~eFv~~l~~~~~ 109 (195)
...++ +|++|+|||||++|++|+|.+|+..... ....+ +..+.+.++.. ..+. .....+|++|++++.+...
T Consensus 73 ~~~~~--~~~~~t~vRdP~~R~vS~y~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~f~~f~~~~~~~~~ 147 (253)
T PF03567_consen 73 DRILN--SYFKFTFVRDPVDRLVSAYYDKIRRGNR--RQCYWCGPNLRKFFRLPNCYEGF-DESDCSFEEFLDYLSDHWT 147 (253)
T ss_dssp ---------EEEEEE--HHHHHHHHHHHHHH-BSS--------S-SS--TT--------------S----HHHHHHTT-S
T ss_pred ccccc--ceEEEEEeCCHHHHHHHHHHHHHhcCcc--cccchhhhHHHhhhccccccccc-cccccchHHHHHHHhcCCc
Confidence 34566 7999999999999999999999975432 11111 22222322210 1112 3445999999999988652
Q ss_pred CCCCCCCcChHHhhhhcCCCCcccceEEcccccHHHHHHHHHHhCC
Q psy484 110 SNETGLDMHWAPVVQFCTPCLINFNVILKFETLQEDQRYLIELTGL 155 (195)
Q Consensus 110 ~~~~~~d~Hw~pq~~~c~pc~i~yDfIgk~E~l~eD~~~i~~~lg~ 155 (195)
. ....|.||+||..+|.+|...|||||++|++++|+..+++.+|+
T Consensus 148 ~-~~~~d~h~~p~~~~~~~~~~~~d~Vg~~E~~~~~~~~l~~~~~~ 192 (253)
T PF03567_consen 148 R-CSWMDRHWRPQCDFCQPCLRDYDFVGRLENFDEDLRRLLRLLGL 192 (253)
T ss_dssp T-T-GGG-SGSTHHHHHHHHHHTEEEEEEGGGHHHHHHHHHHH-HH
T ss_pred c-cccccccccchhhhhcccccccceeeecccHHHHHHHHHHhhhh
Confidence 1 22388999999999999999999999999999999999999999
No 2
>KOG4651|consensus
Probab=99.85 E-value=3.9e-22 Score=172.19 Aligned_cols=160 Identities=23% Similarity=0.255 Sum_probs=123.5
Q ss_pred HhhcCCCceEEEEecCchhhhHhHHHHHhhccCCchhhHhhHHHHHHHhCCccc-cC-CCCCCCCHHHHHHHHhcccCC-
Q psy484 34 SAISAPSSVSFVIVRHPFERLLSAYRDKIYNSLPNTIHRALSSAILRKYRPLAA-TK-STSRRATFEEFVLYLLDTFRS- 110 (195)
Q Consensus 34 ~~l~~~~y~kf~~VRnP~~RlvSay~dK~~~~~~~~~~~~~~~~i~~~y~~~~~-~~-~~~~~~sF~eFv~~l~~~~~~- 110 (195)
..++ +|+||+||||||+|+||||+||+++...-+..+..+..|++++.+... .. .....++|.+|+++.+++..-
T Consensus 142 ~~~~--~~~kfaFIRDP~eRFVS~y~dKcv~~~~cy~c~~~m~civ~k~y~~~~~~~~~~~~g~~~~~fv~~h~aP~tWn 219 (324)
T KOG4651|consen 142 KNLK--DTVKFAFIRDPFERFVSAYLDKCVNENNCYDCGTNMRCIVKKIYKRLKREAQNRGDGVTFEEFVDYHAAPQTWN 219 (324)
T ss_pred hccc--CeEEEEEecCcHHHHHHHHHHHHhccccccCCcccHHHHHHHHHHHhhhhhhcCCCCCcchHHHHHhcCccccc
Confidence 4555 999999999999999999999998754324556677888887655432 21 223458999999999998531
Q ss_pred CCCCCCcChHHhhhhcCCCCcccceEEcccccHHHHHHHHHHhCCCC-ccCCCcccCCCCCCcchhHHHhcccCCHHHHH
Q psy484 111 NETGLDMHWAPVVQFCTPCLINFNVILKFETLQEDQRYLIELTGLSH-LIKPEWINEGKGGSTNQMIGKFYSELSADQLY 189 (195)
Q Consensus 111 ~~~~~d~Hw~pq~~~c~pc~i~yDfIgk~E~l~eD~~~i~~~lg~~~-~~~p~~~~~~~~~s~~~~~~~yy~~~s~~~i~ 189 (195)
-+...|.||.+...+|+||.++|++||++|++.+|.....+.+|... .+.|.-...+.+.++.....+++.+++.....
T Consensus 220 c~f~~~~~~~~~i~~~~~~~~r~~~i~~L~~il~~q~v~~~~i~~i~~~~~~~~t~hst~~s~~r~~~~~~~~~d~~~r~ 299 (324)
T KOG4651|consen 220 CDFNKDIHKWELIKLGSDCEERYSFIGKLETILKDQGVPLELIEKISNELLPGETPHSTHKSSARLEAERQVREDPLIRQ 299 (324)
T ss_pred CCCCCCcchheeeecCCCHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHhcccCcCcCccCCCcHHHHHHHHhhCCHHHHH
Confidence 14678999999999999999999999999999999999999999765 34452111122344555677889999999999
Q ss_pred HHHhhC
Q psy484 190 QLYNVY 195 (195)
Q Consensus 190 ~Ly~~Y 195 (195)
.||++|
T Consensus 300 ~L~kiY 305 (324)
T KOG4651|consen 300 YLHKIY 305 (324)
T ss_pred HHHHHH
Confidence 999887
No 3
>PLN02164 sulfotransferase
Probab=95.04 E-value=0.056 Score=47.58 Aligned_cols=88 Identities=17% Similarity=0.140 Sum_probs=47.3
Q ss_pred CceEEEEecCchhhhHhHHHH--HhhccCCchhhHhhHHHHHHHhCCccccCCCCCCCCHHHHHHHHhcccCCCCCCCCc
Q psy484 40 SSVSFVIVRHPFERLLSAYRD--KIYNSLPNTIHRALSSAILRKYRPLAATKSTSRRATFEEFVLYLLDTFRSNETGLDM 117 (195)
Q Consensus 40 ~y~kf~~VRnP~~RlvSay~d--K~~~~~~~~~~~~~~~~i~~~y~~~~~~~~~~~~~sF~eFv~~l~~~~~~~~~~~d~ 117 (195)
+-.=+.++|||.|++||.|.. ++... .....||++|++...+.... ....-.
T Consensus 165 ~~KiIyv~RnPkDv~VS~yhf~~~~~~~-------------------------~~~~~s~ee~~e~f~~g~~~-~G~y~d 218 (346)
T PLN02164 165 GCKMVYIWRDPKDTFISMWTFLHKERSQ-------------------------QGPLNSLEESFDMFCRGLSV-YGPYLD 218 (346)
T ss_pred CceEEEEecCchhheeeHHHHHhhcccc-------------------------CCCCCCHHHHHHHHHcCCCC-CCcHHH
Confidence 444455999999999999952 22210 11234788888766553210 122223
Q ss_pred ChHHhhhhc--CCCCcccceEEcccccHHHHHHHHH----HhCCC
Q psy484 118 HWAPVVQFC--TPCLINFNVILKFETLQEDQRYLIE----LTGLS 156 (195)
Q Consensus 118 Hw~pq~~~c--~pc~i~yDfIgk~E~l~eD~~~i~~----~lg~~ 156 (195)
|-....... .|.+ =++.++|.|.+|....++ -||++
T Consensus 219 Hv~~yw~~~~~~p~~---VLfl~YEDmk~D~~~~v~ria~FLG~~ 260 (346)
T PLN02164 219 HVLGYWKAYQENPDR---ILFLKYETMRADPLPYVKRLAEFMGYG 260 (346)
T ss_pred HHHHHHHHhhcCCcc---EEEEEHHHHHHhHHHHHHHHHHHhCCC
Confidence 322222222 1211 156788888887755544 45653
No 4
>PF00685 Sulfotransfer_1: Sulfotransferase domain; InterPro: IPR000863 This family includes a range of sulphotransferase proteins including flavonyl 3-sulphotransferase, aryl sulphotransferase, alcohol sulphotransferase, oestrogen sulphotransferase and phenol-sulphating phenol sulphotransferase. These enzymes are responsible for the transfer of sulphate groups to specific compounds.; GO: 0008146 sulfotransferase activity; PDB: 3MGC_A 3MGB_A 3MG9_A 1G3M_B 1HY3_B 2QP4_A 3F3Y_C 1EFH_A 1OV4_A 1J99_A ....
Probab=91.80 E-value=0.32 Score=39.44 Aligned_cols=88 Identities=25% Similarity=0.407 Sum_probs=46.4
Q ss_pred CceEEEEecCchhhhHhHHHHHhhccCCchhhHhhHHHHHHHhCCccccCCCCCCCCHHHHHHHHhcccCCCCCCCCcCh
Q psy484 40 SSVSFVIVRHPFERLLSAYRDKIYNSLPNTIHRALSSAILRKYRPLAATKSTSRRATFEEFVLYLLDTFRSNETGLDMHW 119 (195)
Q Consensus 40 ~y~kf~~VRnP~~RlvSay~dK~~~~~~~~~~~~~~~~i~~~y~~~~~~~~~~~~~sF~eFv~~l~~~~~~~~~~~d~Hw 119 (195)
+..=+.+||||.++++|.|.......... .... .|++|++...... ..-.+|
T Consensus 104 ~~KiI~ivRdP~d~~~S~~~~~~~~~~~~----------------------~~~~-~~~~~~~~~~~~~-----~~~~~~ 155 (267)
T PF00685_consen 104 NAKIIYIVRDPRDVIVSRYKHSWRSNPFS----------------------DPGQ-RFEEFVDWFLQPR-----LLYGSW 155 (267)
T ss_dssp TEEEEEEE--HHHHHHHHHHHHHHBTTST----------------------THHS-HHHHHHHHHHTTH-----STTSCH
T ss_pred ccccceecccccchhHHHHHHHHhccccc----------------------ccch-hhhhhhhhhhccc-----cccccc
Confidence 43344499999999999997654332100 0011 4566666555321 112344
Q ss_pred HHhhh-hcCCCCcccc-eEEcccccHHH----HHHHHHHhCCC
Q psy484 120 APVVQ-FCTPCLINFN-VILKFETLQED----QRYLIELTGLS 156 (195)
Q Consensus 120 ~pq~~-~c~pc~i~yD-fIgk~E~l~eD----~~~i~~~lg~~ 156 (195)
..... .+.... .-+ ++.++|.|..| +..|++-||++
T Consensus 156 ~~~~~~~~~~~~-~~~~~~i~YEdl~~dp~~~l~~I~~FLgl~ 197 (267)
T PF00685_consen 156 ADHLKSWLSSFD-RDNVLIIRYEDLVADPEKELKRICDFLGLP 197 (267)
T ss_dssp HHHHHHHHHHTT-TSTEEEEEHHHHHHSHHHHHHHHHHHTTSS
T ss_pred cccccchhhhhc-cchhhhhcchhhhhhhhHHHHHHHHHHhhc
Confidence 43322 111110 111 57888988755 67778889998
No 5
>KOG1584|consensus
Probab=88.16 E-value=0.87 Score=39.27 Aligned_cols=105 Identities=23% Similarity=0.262 Sum_probs=60.0
Q ss_pred hhhhhCCCCCHHHHHHhhcCCCceEEE-EecCchhhhHhHHHHH-hhccCCchhhHhhHHHHHHHhCCccccCCCCCCCC
Q psy484 19 LARRKYPRPSLHDLESAISAPSSVSFV-IVRHPFERLLSAYRDK-IYNSLPNTIHRALSSAILRKYRPLAATKSTSRRAT 96 (195)
Q Consensus 19 l~r~~~~~~~~~e~~~~l~~~~y~kf~-~VRnP~~RlvSay~dK-~~~~~~~~~~~~~~~~i~~~y~~~~~~~~~~~~~s 96 (195)
|.+.|+|.....+ .+++ +--|++ ++|||-|=+||.|..- .... .....+
T Consensus 106 l~kTHlP~~lLp~--s~~~--~~cKvVYv~RNpKD~~VSy~hf~~~~~~-------------------------~~~~~~ 156 (297)
T KOG1584|consen 106 LFKTHLPFQLLPE--SLKE--SKCKVVYVCRNPKDVLVSYYHFNRMLKT-------------------------QPGPGT 156 (297)
T ss_pred ceeccCChhhcch--hhhc--CCCcEEEEecCccceeeeHHHHHhhhcc-------------------------CCCCCc
Confidence 4455555443221 2444 556777 9999999999999721 1111 122345
Q ss_pred HHHHHHHHhcccCCCCCCCCcChHHhhhhcCCCCcccceEEcccccHHHHHHHHH----HhCCC
Q psy484 97 FEEFVLYLLDTFRSNETGLDMHWAPVVQFCTPCLINFNVILKFETLQEDQRYLIE----LTGLS 156 (195)
Q Consensus 97 F~eFv~~l~~~~~~~~~~~d~Hw~pq~~~c~pc~i~yDfIgk~E~l~eD~~~i~~----~lg~~ 156 (195)
|++|++...+... ...+.=.|-.....+-.|-+|. ..++|.|.+|.....+ =||.+
T Consensus 157 ~e~~fe~F~~G~~-~~Gp~~dHVl~~W~~~~~~~VL---Fl~YEdmk~dp~~~ikrlaeFLg~~ 216 (297)
T KOG1584|consen 157 FEEFFESFCNGVV-PYGPWWDHVLGYWELEDPKNVL---FLKYEDMKADPKGEIKKLAEFLGCP 216 (297)
T ss_pred HHHHHHHHhCCcC-CcCChHHHHHHHHHhcCCCceE---EEEHHHhhhCHHHHHHHHHHHhCCC
Confidence 8988887776532 1233334544444444444332 2699999888755544 45654
No 6
>KOG3922|consensus
Probab=86.05 E-value=1.6 Score=37.96 Aligned_cols=85 Identities=25% Similarity=0.395 Sum_probs=50.8
Q ss_pred EEecCchhhhHhHHHHHhhccCCchhhHhhHHHHHHHhCCccccCCCCCCCCHHHHHHHHhcccCCCCCCCCcChHHhhh
Q psy484 45 VIVRHPFERLLSAYRDKIYNSLPNTIHRALSSAILRKYRPLAATKSTSRRATFEEFVLYLLDTFRSNETGLDMHWAPVVQ 124 (195)
Q Consensus 45 ~~VRnP~~RlvSay~dK~~~~~~~~~~~~~~~~i~~~y~~~~~~~~~~~~~sF~eFv~~l~~~~~~~~~~~d~Hw~pq~~ 124 (195)
-+||+|.+|++|.|-- ..- +.+| ++.+++ ...+...+|+|=| +.... ++....||...-.
T Consensus 165 NvIRdPveRllS~yyf--lRf-gd~y----r~~l~r--------~~~g~~~tfdeCv---l~g~~--dC~~~qlw~qipf 224 (361)
T KOG3922|consen 165 NVIRDPVERLLSYYYF--LRF-GDNY----REGLPR--------LPAGNKETFDECV---LEGGP--DCDPKQLWLQIPF 224 (361)
T ss_pred eeeccHHHHHHhHhhh--hcc-cccc----ccCccc--------CCCCCcccHHHHH---HCCCC--CCChHHheeecce
Confidence 4899999999999953 221 1222 222211 1234455777544 55442 5667779998777
Q ss_pred hcCC---CCc----------------ccceEEcccccHHHHHHH
Q psy484 125 FCTP---CLI----------------NFNVILKFETLQEDQRYL 149 (195)
Q Consensus 125 ~c~p---c~i----------------~yDfIgk~E~l~eD~~~i 149 (195)
+|.- |.- .|=.||-+|.|++-+..+
T Consensus 225 FCGh~~eC~e~gs~wALerAK~nv~e~y~LVGvtEel~d~l~LL 268 (361)
T KOG3922|consen 225 FCGHDYECTEPGSVWALERAKFNVEEEYLLVGVTEELEDFLSLL 268 (361)
T ss_pred ecCCCcccCCCCCHHHHHHHHHHHhhhheeeeeHHHHHHHHHHH
Confidence 7742 321 377889888876554433
No 7
>PF06990 Gal-3-0_sulfotr: Galactose-3-O-sulfotransferase ; InterPro: IPR009729 This family consists of several mammalian galactose-3-O-sulphotransferase proteins. Gal-3-O-sulphotransferase is thought to play a critical role in 3'-sulphation of N-acetyllactosamine in both O- and N-glycans [].; GO: 0001733 galactosylceramide sulfotransferase activity, 0009058 biosynthetic process, 0005794 Golgi apparatus, 0016021 integral to membrane
Probab=84.36 E-value=1.1 Score=40.32 Aligned_cols=36 Identities=14% Similarity=0.231 Sum_probs=29.4
Q ss_pred CCCCCHHHHHHhhcCCCceEEEEecCchhhhHhHHHH
Q psy484 24 YPRPSLHDLESAISAPSSVSFVIVRHPFERLLSAYRD 60 (195)
Q Consensus 24 ~~~~~~~e~~~~l~~~~y~kf~~VRnP~~RlvSay~d 60 (195)
.-+++.+++.+++.. +.+-|+|+|||.+++.|+|..
T Consensus 133 H~rfn~~~~~~lmP~-dt~yiTILRdP~~~feS~f~Y 168 (402)
T PF06990_consen 133 HMRFNRPEVRKLMPP-DTKYITILRDPVSHFESSFNY 168 (402)
T ss_pred hhccCHHHHHHhCCC-CCeEEEEEcCHHHHHHhHHHH
Confidence 346778889999973 456688999999999999974
No 8
>KOG3704|consensus
Probab=68.87 E-value=5 Score=34.49 Aligned_cols=26 Identities=31% Similarity=0.615 Sum_probs=20.7
Q ss_pred CCceEEEEecCchhhhHhHHHHHhhc
Q psy484 39 PSSVSFVIVRHPFERLLSAYRDKIYN 64 (195)
Q Consensus 39 ~~y~kf~~VRnP~~RlvSay~dK~~~ 64 (195)
++..-++|||||-+|.+|-|-+-+-+
T Consensus 189 pd~KLivvvR~PvtRaiSDyTQt~sk 214 (360)
T KOG3704|consen 189 PDTKLIVVVRDPVTRAISDYTQTLSK 214 (360)
T ss_pred CCceEEEEEcCchhhhHHHHHHHHhc
Confidence 35555679999999999999876653
No 9
>COG2921 Uncharacterized conserved protein [Function unknown]
Probab=54.25 E-value=19 Score=25.49 Aligned_cols=64 Identities=17% Similarity=0.354 Sum_probs=41.9
Q ss_pred CCCCcccceEEccc-ccHHHHHHHHHHhCCCCccCCC--cccCCCCCCcchhHHHhcccCCHHHHHHHHh
Q psy484 127 TPCLINFNVILKFE-TLQEDQRYLIELTGLSHLIKPE--WINEGKGGSTNQMIGKFYSELSADQLYQLYN 193 (195)
Q Consensus 127 ~pc~i~yDfIgk~E-~l~eD~~~i~~~lg~~~~~~p~--~~~~~~~~s~~~~~~~yy~~~s~~~i~~Ly~ 193 (195)
-||.+.|-.+|... .|+++.-.+.++-+-.... |+ ++.+++|...+ +.=-+.....+++..||+
T Consensus 12 FPc~F~~KVmG~a~~~l~~~vv~vvqr~ap~~~~-~~~~~k~SSkGnY~s--vsI~i~A~~~EQ~e~ly~ 78 (90)
T COG2921 12 FPCTFTYKVMGAAGPELEDQVVEVVQRHAPGDYT-PRVSWKPSSKGNYLS--VSITIRATNIEQVEALYR 78 (90)
T ss_pred CCccceeeehcccchhHHHHHHHHHHHHCCcccC-ceeeeccCCCCceEE--EEEEEEECCHHHHHHHHH
Confidence 48999999999875 4888888888777654333 33 24444443322 222366777888888875
No 10
>PF00036 EF-hand_1: EF hand; InterPro: IPR018248 Many calcium-binding proteins belong to the same evolutionary family and share a type of calcium-binding domain known as the EF-hand. This type of domain consists of a twelve residue loop flanked on both sides by a twelve residue alpha-helical domain. In an EF-hand loop the calcium ion is coordinated in a pentagonal bipyramidal configuration. The six residues involved in the binding are in positions 1, 3, 5, 7, 9 and 12; these residues are denoted by X, Y, Z, -Y, -X and -Z. The invariant Glu or Asp at position 12 provides two oxygens for liganding Ca (bidentate ligand).; PDB: 1BJF_A 1XFW_R 1XFV_O 2K0J_A 2F3Z_A 3BYA_A 1XFU_Q 2R28_B 1ZOT_B 3G43_D ....
Probab=34.84 E-value=40 Score=18.34 Aligned_cols=24 Identities=21% Similarity=0.346 Sum_probs=16.3
Q ss_pred HHHHHhCCccccCCCCCCCCHHHHHHHHh
Q psy484 77 AILRKYRPLAATKSTSRRATFEEFVLYLL 105 (195)
Q Consensus 77 ~i~~~y~~~~~~~~~~~~~sF~eFv~~l~ 105 (195)
++++.|-.+ ....+||+||+..+.
T Consensus 4 ~~F~~~D~d-----~dG~I~~~Ef~~~~~ 27 (29)
T PF00036_consen 4 EAFREFDKD-----GDGKIDFEEFKEMMK 27 (29)
T ss_dssp HHHHHHSTT-----SSSEEEHHHHHHHHH
T ss_pred HHHHHHCCC-----CCCcCCHHHHHHHHH
Confidence 445555544 456799999998764
No 11
>PF07380 Pneumo_M2: Pneumovirus M2 protein; InterPro: IPR009969 This family consists of several Pneumovirus M2 proteins. The M2-1 protein of respiratory syncytial virus (RSV) is a transcription processivity factor that is essential for virus replication [].
Probab=33.07 E-value=38 Score=23.52 Aligned_cols=30 Identities=20% Similarity=0.362 Sum_probs=22.3
Q ss_pred CCCCCcChHHhhhhcCCCCcccceEEcccccHHHHHHHHHHhCCCCcc
Q psy484 112 ETGLDMHWAPVVQFCTPCLINFNVILKFETLQEDQRYLIELTGLSHLI 159 (195)
Q Consensus 112 ~~~~d~Hw~pq~~~c~pc~i~yDfIgk~E~l~eD~~~i~~~lg~~~~~ 159 (195)
....++||.+|- |-++...+++.+|+...+
T Consensus 53 ~~fdeIhWTsq~------------------Lid~~q~fLqhlgis~di 82 (89)
T PF07380_consen 53 HMFDEIHWTSQD------------------LIDATQNFLQHLGISEDI 82 (89)
T ss_pred ccchhhccchHH------------------HHHHHHHHHHHcCCCcce
Confidence 345578999883 457888999999987644
No 12
>PRK04998 hypothetical protein; Provisional
Probab=29.67 E-value=80 Score=21.95 Aligned_cols=27 Identities=15% Similarity=0.282 Sum_probs=20.5
Q ss_pred CCCCcccceEEcc-cccHHHHHHHHHHh
Q psy484 127 TPCLINFNVILKF-ETLQEDQRYLIELT 153 (195)
Q Consensus 127 ~pc~i~yDfIgk~-E~l~eD~~~i~~~l 153 (195)
-||...|-+||.- +.+.+.+..++++-
T Consensus 12 fPc~~~~Kvig~~~~~~~~~v~~v~~~~ 39 (88)
T PRK04998 12 FPCSFTYKVMGLARPELVDQVVEVVQRH 39 (88)
T ss_pred CCCCceEEEEEeCcHhHHHHHHHHHHHh
Confidence 4899999999965 55777777777553
No 13
>PF09037 Sulphotransf: Stf0 sulphotransferase; InterPro: IPR024628 Members of this family are essential for the biosynthesis of sulpholipid-1 in prokaryotes. They adopt a structure that belongs to the sulphotransferase superfamily, consisting of a single domain with a core four-stranded parallel beta-sheet flanked by alpha-helices []. ; PDB: 1TEX_B.
Probab=29.64 E-value=66 Score=26.80 Aligned_cols=106 Identities=17% Similarity=0.265 Sum_probs=51.1
Q ss_pred HHHhhcCCCceEEEEe--cCchhhhHhHHHHHhhccCCchhhHh-hHHHHHHHhCCccccCCCCCCCCHHHHHHHHhccc
Q psy484 32 LESAISAPSSVSFVIV--RHPFERLLSAYRDKIYNSLPNTIHRA-LSSAILRKYRPLAATKSTSRRATFEEFVLYLLDTF 108 (195)
Q Consensus 32 ~~~~l~~~~y~kf~~V--RnP~~RlvSay~dK~~~~~~~~~~~~-~~~~i~~~y~~~~~~~~~~~~~sF~eFv~~l~~~~ 108 (195)
++..+. + .+|+++ ||-..++||-++..-.+ .|... -+...-+ -..+....++|++....+....
T Consensus 107 i~~~~~--~-~~~I~L~R~d~l~QAvS~~~A~qtg----~w~~~~~~~~~~r------~~~~~~~~yd~~~i~~~i~~i~ 173 (245)
T PF09037_consen 107 IEDLFG--D-VKFIHLRRRDLLRQAVSLWRARQTG----VWHQHADGTRDER------VSPPRKPRYDFEEIAHLIDRIE 173 (245)
T ss_dssp HHHHHT--S--EEEEEE-S-HHHHHHHHHHHHHHS---------------TT----------------HHHHHHHHHHHH
T ss_pred HHHHcC--C-eEEEEEEeCCHHHHHHHHHHHHhCC----CcccCCCCCcccc------ccccccceeCHHHHHHHHHHHH
Confidence 566777 6 677655 39999999999865332 12211 1110000 0001245677888777665532
Q ss_pred CCCCCCCCcChHHhhhhcCCCCcccceEEcccccHHH----HHHHHHHhCCCCcc
Q psy484 109 RSNETGLDMHWAPVVQFCTPCLINFNVILKFETLQED----QRYLIELTGLSHLI 159 (195)
Q Consensus 109 ~~~~~~~d~Hw~pq~~~c~pc~i~yDfIgk~E~l~eD----~~~i~~~lg~~~~~ 159 (195)
..+.-|......+. |.+ ...-+|.|..| +..|++.||++..+
T Consensus 174 -----~~~~~w~~~f~~~~---i~p-l~i~YEdL~~dp~~~~~~Vl~fLgv~~~~ 219 (245)
T PF09037_consen 174 -----DQEAFWRNWFARHG---IEP-LEITYEDLLADPQKTVARVLDFLGVDPPL 219 (245)
T ss_dssp -----HHHHHHHHHHHHTT-------EEEEHHHHHHHHHHHHHHHHHHTTS-GGG
T ss_pred -----HHHHHHHHHHHHcC---CCe-eEEEHHHHHhCHHHHHHHHHHHhCCCCcc
Confidence 23455665554432 333 23467887776 45678889997654
No 14
>PF13469 Sulfotransfer_3: Sulfotransferase family; PDB: 3AP1_B 3AP3_B 3AP2_B 3RNL_A 2Z6V_A 2ZQ5_A.
Probab=27.13 E-value=52 Score=24.75 Aligned_cols=20 Identities=30% Similarity=0.094 Sum_probs=13.6
Q ss_pred eEEEEecCchhhhHhHHHHH
Q psy484 42 VSFVIVRHPFERLLSAYRDK 61 (195)
Q Consensus 42 ~kf~~VRnP~~RlvSay~dK 61 (195)
.-+.+||||.+-+.|..+..
T Consensus 129 ~~V~i~RdP~~~~~S~~~~~ 148 (215)
T PF13469_consen 129 RFVHIVRDPRDVAASWLRMF 148 (215)
T ss_dssp EEEEEE--HHHHHHHHHHHC
T ss_pred eEEEEEeChHHHHhhHHHHh
Confidence 44569999999999976544
No 15
>PRK02047 hypothetical protein; Provisional
Probab=25.87 E-value=1e+02 Score=21.68 Aligned_cols=27 Identities=11% Similarity=0.129 Sum_probs=20.8
Q ss_pred CCCCcccceEEccc-ccHHHHHHHHHHh
Q psy484 127 TPCLINFNVILKFE-TLQEDQRYLIELT 153 (195)
Q Consensus 127 ~pc~i~yDfIgk~E-~l~eD~~~i~~~l 153 (195)
-||...|-+||.-+ .+.+.+..++..-
T Consensus 13 fPc~~~~KvIG~~~~~~~~~v~~iv~~~ 40 (91)
T PRK02047 13 YPSDFPIKVMGKAHPEFADTIFKVVSVH 40 (91)
T ss_pred CCCCCeEEEEEeCcHhHHHHHHHHHHHh
Confidence 48999999999544 5777778887654
No 16
>PF10364 NKWYS: Putative capsular polysaccharide synthesis protein; InterPro: IPR018831 This entry contains proteins of no known function. They are found predominantly in Vibrio and cyanobacterial species and are characterised by having a NKWYS sequence motif.
Probab=25.60 E-value=2.1e+02 Score=22.07 Aligned_cols=57 Identities=21% Similarity=0.355 Sum_probs=34.2
Q ss_pred EEcccccHHHHHHHHHHhCCCCccCCCcccCCCCCCcchhHHHhcc--cCCHHHHHHHHh
Q psy484 136 ILKFETLQEDQRYLIELTGLSHLIKPEWINEGKGGSTNQMIGKFYS--ELSADQLYQLYN 193 (195)
Q Consensus 136 Igk~E~l~eD~~~i~~~lg~~~~~~p~~~~~~~~~s~~~~~~~yy~--~~s~~~i~~Ly~ 193 (195)
|.|+|.|+.=-+.+.+-||++.-..++ .|.+.+......++++=. ++|++.+.++|.
T Consensus 72 lir~E~L~~~~~~i~efL~i~~f~l~~-~N~a~nK~Y~~iY~~fke~~~l~~~~leemY~ 130 (141)
T PF10364_consen 72 LIRCEKLDSLQEAIREFLGIDNFTLVN-SNEAKNKWYSNIYQEFKESYRLPREYLEEMYD 130 (141)
T ss_pred EEehhhhhhHHHHHHHHhCCCCcccee-cccccccchHHHHHHHHHhCCCCHHHHHHHHc
Confidence 589999999334555667987655443 344444333333443322 467888887774
No 17
>PRK00341 hypothetical protein; Provisional
Probab=24.30 E-value=1.2e+02 Score=21.26 Aligned_cols=28 Identities=14% Similarity=0.150 Sum_probs=21.6
Q ss_pred CCC-CcccceEEcc-cccHHHHHHHHHHhC
Q psy484 127 TPC-LINFNVILKF-ETLQEDQRYLIELTG 154 (195)
Q Consensus 127 ~pc-~i~yDfIgk~-E~l~eD~~~i~~~lg 154 (195)
-|| .+.|-.||.- +.+.+.+..|+++-.
T Consensus 13 FPc~~~~~KViG~~~~~~~~~V~~iv~~~~ 42 (91)
T PRK00341 13 FPCEDYPIKVIGDTGVGFKDLVIEILQKHA 42 (91)
T ss_pred CCCCCccEEEEEcCchhHHHHHHHHHHHhC
Confidence 489 6999999954 468888888886543
No 18
>PF13833 EF-hand_8: EF-hand domain pair; PDB: 3KF9_A 1TTX_A 1WLZ_A 1ALV_A 1NX3_A 1ALW_A 1NX2_A 1NX1_A 1NX0_A 1DF0_A ....
Probab=23.41 E-value=53 Score=19.86 Aligned_cols=27 Identities=15% Similarity=0.369 Sum_probs=18.3
Q ss_pred HHHHHHHhCCccccCCCCCCCCHHHHHHHHhc
Q psy484 75 SSAILRKYRPLAATKSTSRRATFEEFVLYLLD 106 (195)
Q Consensus 75 ~~~i~~~y~~~~~~~~~~~~~sF~eFv~~l~~ 106 (195)
...|+..+..+ ....++|+||+.++.+
T Consensus 27 ~~~l~~~~D~~-----~~G~I~~~EF~~~~~~ 53 (54)
T PF13833_consen 27 VDRLFREFDTD-----GDGYISFDEFISMMQR 53 (54)
T ss_dssp HHHHHHHHTTS-----SSSSEEHHHHHHHHHH
T ss_pred HHHHHHhcccC-----CCCCCCHHHHHHHHHh
Confidence 34555555433 5668999999998754
No 19
>PF09279 EF-hand_like: Phosphoinositide-specific phospholipase C, efhand-like; InterPro: IPR015359 This domain is predominantly found in the enzyme phosphoinositol-specific phospholipase C. It adopts a structure consisting of a core of four alpha helices, in an EF like fold, and is required for functioning of the enzyme []. ; PDB: 3OHM_B 3QR0_A 2ZKM_X 2FJU_B 3QR1_D 1DJW_B 1DJI_B 1DJG_B 1QAS_B 2ISD_B ....
Probab=22.69 E-value=32 Score=23.16 Aligned_cols=35 Identities=17% Similarity=0.355 Sum_probs=23.2
Q ss_pred hhHHHHHHHhCCccccCCCCCCCCHHHHHHHHhccc
Q psy484 73 ALSSAILRKYRPLAATKSTSRRATFEEFVLYLLDTF 108 (195)
Q Consensus 73 ~~~~~i~~~y~~~~~~~~~~~~~sF~eFv~~l~~~~ 108 (195)
.-...|+.+|..... ......+|+++|+.||.+..
T Consensus 37 ~~~~~li~~~~~~~~-~~~~~~lt~~gF~~fL~S~~ 71 (83)
T PF09279_consen 37 EQAKELIEKFEPDER-NRQKGQLTLEGFTRFLFSDE 71 (83)
T ss_dssp HHHHHHHHHHHHHHH-HHCTTEEEHHHHHHHHHSTT
T ss_pred HHHHHHHHHHccchh-hcccCCcCHHHHHHHHCCCc
Confidence 344566777644321 12357899999999999865
No 20
>cd05022 S-100A13 S-100A13: S-100A13 domain found in proteins similar to S100A13. S100A13 is a calcium-binding protein belonging to a large S100 vertebrate-specific protein family within the EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100A13 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100A13 is involved in the cellular export of interleukin-1 (IL-1) and of fibroblast growth factor-1 (FGF-1), which plays an important role in angiogenesis and tissue regeneration. Export is based on the CuII-dependent formation of multiprotein complexes containing the S100A13 protein. Assembly of these complexes occurs near the inner surface of the plasma membrane. Binding of two Ca(II) ions per monomer triggers key conformational changes leading to the creation of two identical and symmetrical Cu(II)-binding sites on the surface of the protein, close to the interface between the two monomers. These Cu
Probab=22.46 E-value=82 Score=21.97 Aligned_cols=18 Identities=22% Similarity=0.368 Sum_probs=14.6
Q ss_pred CCCCCCCHHHHHHHHhcc
Q psy484 90 STSRRATFEEFVLYLLDT 107 (195)
Q Consensus 90 ~~~~~~sF~eFv~~l~~~ 107 (195)
+....++|+||+..+...
T Consensus 59 d~DG~I~F~EF~~l~~~l 76 (89)
T cd05022 59 NQDSKLSFEEFWELIGEL 76 (89)
T ss_pred CCCCCCcHHHHHHHHHHH
Confidence 457789999999988764
No 21
>PF06757 Ins_allergen_rp: Insect allergen related repeat, nitrile-specifier detoxification; InterPro: IPR010629 This entry represents several insect specific allergen repeats. These repeats are commonly found in various proteins from cockroaches, fruit flies and mosquitos. It has been suggested that the repeat sequences have evolved by duplication of an ancestral amino acid domain, which may have arisen from the mitochondrial energy transfer proteins []. This family exemplifies a case of novel gene evolution. The case in point is the arms-race between plants and their infective insective herbivores in the area of the glucosinolate-myrosinase system. Brassicas have developed the glucosinolate-myrosinase system as chemical defence mechanism against the insects, and consequently the insects have adapted to produce a detoxifying molecule, nitrile-specifier protein (NSP). NSP is present in the Pieris rapae (Cabbage white butterfly). NSP is structurally different from and has no amino acid homology to any known detoxifying enzymes, and it appears to have arisen by a process of domain and gene duplication of a sequence of unknown function that is widespread in insect species and referred to as insect-allergen-repeat protein. Thus this family is found either as a single domain or as a multiple repeat-domain [].
Probab=22.32 E-value=1.9e+02 Score=22.61 Aligned_cols=48 Identities=25% Similarity=0.398 Sum_probs=30.6
Q ss_pred HHHHHHHhCCCCccCCCcccCCCCCCcchhHHHhcccCCHHHHHHHHh
Q psy484 146 QRYLIELTGLSHLIKPEWINEGKGGSTNQMIGKFYSELSADQLYQLYN 193 (195)
Q Consensus 146 ~~~i~~~lg~~~~~~p~~~~~~~~~s~~~~~~~yy~~~s~~~i~~Ly~ 193 (195)
++.+-..+|++....+...+..++..-++.+.+-.+-+|.+.+..||+
T Consensus 77 i~~i~~~l~~~~~~p~~~~~~~~~~g~~g~~~di~~~lP~~~l~aL~~ 124 (179)
T PF06757_consen 77 INQINDLLGLPPLNPTPSLSCSRGGGLNGFVDDILALLPRDKLRALYE 124 (179)
T ss_pred HHHHHHHHcCCcCCCCcccccccCCCHHHHHHHHHHHCCHHHHHHHHH
Confidence 344455567776543222111134445677899999999999999986
No 22
>PF07443 HARP: HepA-related protein (HARP); InterPro: IPR010003 This entry represents a conserved region approximately 60 residues long within eukaryotic HepA-related protein (HARP). This exhibits single-stranded DNA-dependent ATPase activity, and is ubiquitously expressed in human and mouse tissues []. Family members may contain more than one copy of this region.; GO: 0004386 helicase activity, 0005524 ATP binding, 0016818 hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides, 0016568 chromatin modification, 0005634 nucleus
Probab=21.42 E-value=72 Score=20.51 Aligned_cols=16 Identities=19% Similarity=0.395 Sum_probs=14.8
Q ss_pred CCCCHHHHHHhhcCcch
Q psy484 1 MSYSPQFLRRQSQAPVL 17 (195)
Q Consensus 1 ~~~~~~~~~~~~~~p~~ 17 (195)
.||.+++|.--|++| +
T Consensus 5 igy~~~lI~vFK~~p-S 20 (55)
T PF07443_consen 5 IGYHEELIAVFKQMP-S 20 (55)
T ss_pred ccCCHHHHHHHHcCc-c
Confidence 499999999999999 6
No 23
>PF10413 Rhodopsin_N: Amino terminal of the G-protein receptor rhodopsin; InterPro: IPR019477 Rhodopsin is the archetypal G-protein-coupled receptor. Such receptors participate in virtually all physiological processes as signalling molecules. They utilise heterotrimeric guanosine triphosphate (GTP)-binding proteins to transduce extracellular signals to intracellular events. Rhodopsin is important because of the pivotal role it plays in visual signal transduction. It is a dimeric transmembrane protein whose intradiskal surface consists of an N-terminal domain and three loops connecting six of the seven transmembrane helices. The N-terminal domain is a compact alpha-helical region with breaks and bends at proline residues outside the membrane []. This entry represents the N-terminal domain, while the transmembrane region is represented by (IPR000276 from INTERPRO). The N-terminal domain is extracellular is and is necessary for successful dimerisation and molecular stability []. ; PDB: 3PXO_A 4A4M_A 3OAX_A 2J4Y_A 2HPY_A 1F88_B 3PQR_A 1L9H_B 2I37_B 1GZM_B ....
Probab=20.32 E-value=24 Score=20.53 Aligned_cols=7 Identities=57% Similarity=1.298 Sum_probs=4.6
Q ss_pred EecCchh
Q psy484 46 IVRHPFE 52 (195)
Q Consensus 46 ~VRnP~~ 52 (195)
+||.||+
T Consensus 18 vVRsP~e 24 (36)
T PF10413_consen 18 VVRSPYE 24 (36)
T ss_dssp HHS-TTT
T ss_pred cccCCCc
Confidence 6888876
Done!