RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy484
         (195 letters)



>d1x6da1 b.36.1.2 (A:8-114) Interleukin 16 {Human (Homo sapiens)
           [TaxId: 9606]}
          Length = 107

 Score = 26.5 bits (58), Expect = 1.1
 Identities = 7/30 (23%), Positives = 13/30 (43%)

Query: 6   QFLRRQSQAPVLSLARRKYPRPSLHDLESA 35
             LR+  +     +  RK    ++ DL S+
Sbjct: 78  AILRQAREPRQAVIVTRKLTPEAMPDLNSS 107


>d1rtqa_ c.56.5.4 (A:) Aminopeptidase {Aeromonas proteolytica
           [TaxId: 671]}
          Length = 291

 Score = 26.4 bits (57), Expect = 2.5
 Identities = 6/83 (7%), Positives = 21/83 (25%), Gaps = 2/83 (2%)

Query: 103 YLLDTFRSNETGLDMHWAPVVQFCTPCLINFNVILKFETLQEDQRYLIELTGLSHLIKPE 162
           ++   ++       +  A V Q         +V++     +    +++    L   I   
Sbjct: 48  WIASEWQ--ALSASLPNASVKQVSHSGYNQKSVVMTITGSEAPDEWIVIGGHLDSTIGSH 105

Query: 163 WINEGKGGSTNQMIGKFYSELSA 185
              +      +       +    
Sbjct: 106 TNEQSVAPGADDDASGIAAVTEV 128


>d1y97a1 c.55.3.5 (A:1-228) Three prime repair exonuclease 2, TREX2
           {Human (Homo sapiens) [TaxId: 9606]}
          Length = 228

 Score = 24.9 bits (53), Expect = 7.2
 Identities = 12/71 (16%), Positives = 20/71 (28%), Gaps = 5/71 (7%)

Query: 92  SRRATFEEFVLYLLDTFRSNETGLDMHWAPVVQFCTPCLINFNVILKFETLQEDQRYLIE 151
           S     E FV   L+      TGL      + +     +   ++                
Sbjct: 2   SEAPRAETFVFLDLEA-----TGLPSVEPEIAELSLFAVHRSSLENPEHDESGALVLPRV 56

Query: 152 LTGLSHLIKPE 162
           L  L+  + PE
Sbjct: 57  LDKLTLCMCPE 67


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.322    0.135    0.397 

Gapped
Lambda     K      H
   0.267   0.0567    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 700,832
Number of extensions: 29946
Number of successful extensions: 55
Number of sequences better than 10.0: 1
Number of HSP's gapped: 55
Number of HSP's successfully gapped: 6
Length of query: 195
Length of database: 2,407,596
Length adjustment: 81
Effective length of query: 114
Effective length of database: 1,295,466
Effective search space: 147683124
Effective search space used: 147683124
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 50 (23.4 bits)