BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy4842
(95 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3RHW|A Chain A, C. Elegans Glutamate-Gated Chloride Channel (Glucl) In
Complex With Fab And Ivermectin
pdb|3RHW|B Chain B, C. Elegans Glutamate-Gated Chloride Channel (Glucl) In
Complex With Fab And Ivermectin
pdb|3RHW|C Chain C, C. Elegans Glutamate-Gated Chloride Channel (Glucl) In
Complex With Fab And Ivermectin
pdb|3RHW|D Chain D, C. Elegans Glutamate-Gated Chloride Channel (Glucl) In
Complex With Fab And Ivermectin
pdb|3RHW|E Chain E, C. Elegans Glutamate-Gated Chloride Channel (Glucl) In
Complex With Fab And Ivermectin
pdb|3RI5|A Chain A, C. Elegans Glutamate-Gated Chloride Channel (Glucl) In
Complex With Fab, Ivermectin And Picrotoxin
pdb|3RI5|B Chain B, C. Elegans Glutamate-Gated Chloride Channel (Glucl) In
Complex With Fab, Ivermectin And Picrotoxin
pdb|3RI5|C Chain C, C. Elegans Glutamate-Gated Chloride Channel (Glucl) In
Complex With Fab, Ivermectin And Picrotoxin
pdb|3RI5|D Chain D, C. Elegans Glutamate-Gated Chloride Channel (Glucl) In
Complex With Fab, Ivermectin And Picrotoxin
pdb|3RI5|E Chain E, C. Elegans Glutamate-Gated Chloride Channel (Glucl) In
Complex With Fab, Ivermectin And Picrotoxin
pdb|3RIA|A Chain A, C. Elegans Glutamate-Gated Chloride Channel (Glucl) In
Complex With Fab, Ivermectin And Iodide.
pdb|3RIA|B Chain B, C. Elegans Glutamate-Gated Chloride Channel (Glucl) In
Complex With Fab, Ivermectin And Iodide.
pdb|3RIA|C Chain C, C. Elegans Glutamate-Gated Chloride Channel (Glucl) In
Complex With Fab, Ivermectin And Iodide.
pdb|3RIA|D Chain D, C. Elegans Glutamate-Gated Chloride Channel (Glucl) In
Complex With Fab, Ivermectin And Iodide.
pdb|3RIA|E Chain E, C. Elegans Glutamate-Gated Chloride Channel (Glucl) In
Complex With Fab, Ivermectin And Iodide.
pdb|3RIF|A Chain A, C. Elegans Glutamate-Gated Chloride Channel (Glucl) In
Complex With Fab, Ivermectin And Glutamate.
pdb|3RIF|B Chain B, C. Elegans Glutamate-Gated Chloride Channel (Glucl) In
Complex With Fab, Ivermectin And Glutamate.
pdb|3RIF|C Chain C, C. Elegans Glutamate-Gated Chloride Channel (Glucl) In
Complex With Fab, Ivermectin And Glutamate.
pdb|3RIF|D Chain D, C. Elegans Glutamate-Gated Chloride Channel (Glucl) In
Complex With Fab, Ivermectin And Glutamate.
pdb|3RIF|E Chain E, C. Elegans Glutamate-Gated Chloride Channel (Glucl) In
Complex With Fab, Ivermectin And Glutamate
Length = 347
Score = 62.0 bits (149), Expect = 9e-11, Method: Composition-based stats.
Identities = 30/96 (31%), Positives = 52/96 (54%), Gaps = 3/96 (3%)
Query: 1 MRYRWVDPRLAHNAKENYLGE---INLRDRVWTPHLYLVNEHDSRIMGSGRQDILISVQP 57
+R W+D RL++ K + + + + ++W P + NE + + ++LI +
Sbjct: 55 LRESWIDKRLSYGVKGDGQPDFVILTVGHQIWMPDTFFPNEKQAYKHTIDKPNVLIRIHN 114
Query: 58 DGTVLYSTRLKVTLLCLMNLKKFPFDEQECPLVLES 93
DGTVLYS R+ + L C M L+ +P D Q+C + L S
Sbjct: 115 DGTVLYSVRISLVLSCPMYLQYYPMDVQQCSIDLAS 150
>pdb|3TLT|A Chain A, The Glic Pentameric Ligand-Gated Ion Channel H11'f Mutant
In A Locally-Closed Conformation (Lc1 Subtype)
pdb|3TLT|B Chain B, The Glic Pentameric Ligand-Gated Ion Channel H11'f Mutant
In A Locally-Closed Conformation (Lc1 Subtype)
pdb|3TLT|C Chain C, The Glic Pentameric Ligand-Gated Ion Channel H11'f Mutant
In A Locally-Closed Conformation (Lc1 Subtype)
pdb|3TLT|D Chain D, The Glic Pentameric Ligand-Gated Ion Channel H11'f Mutant
In A Locally-Closed Conformation (Lc1 Subtype)
pdb|3TLT|E Chain E, The Glic Pentameric Ligand-Gated Ion Channel H11'f Mutant
In A Locally-Closed Conformation (Lc1 Subtype)
Length = 321
Score = 45.8 bits (107), Expect = 6e-06, Method: Composition-based stats.
Identities = 26/83 (31%), Positives = 42/83 (50%), Gaps = 7/83 (8%)
Query: 5 WVDPRLAHN-AKENYLGEINLRDRVWTPHLYLVNEHDSRIMGSGRQDIL-ISVQPDGTVL 62
W D RLA + + + + +W P + VN ++R D++ ISV PDGTV
Sbjct: 51 WKDRRLAFDPVRSGVRVKTYEPEAIWIPEIRFVNVENAR-----DADVVDISVSPDGTVQ 105
Query: 63 YSTRLKVTLLCLMNLKKFPFDEQ 85
Y R +L ++ +++PFD Q
Sbjct: 106 YLERFSARVLSPLDFRRYPFDSQ 128
>pdb|3UU3|A Chain A, The Glic Pentameric Ligand-Gated Ion Channel Loop2-20'
Oxidized Mutant In A Locally-Closed Conformation (Lc1
Subtype)
pdb|3UU3|B Chain B, The Glic Pentameric Ligand-Gated Ion Channel Loop2-20'
Oxidized Mutant In A Locally-Closed Conformation (Lc1
Subtype)
pdb|3UU3|C Chain C, The Glic Pentameric Ligand-Gated Ion Channel Loop2-20'
Oxidized Mutant In A Locally-Closed Conformation (Lc1
Subtype)
pdb|3UU3|D Chain D, The Glic Pentameric Ligand-Gated Ion Channel Loop2-20'
Oxidized Mutant In A Locally-Closed Conformation (Lc1
Subtype)
pdb|3UU3|E Chain E, The Glic Pentameric Ligand-Gated Ion Channel Loop2-20'
Oxidized Mutant In A Locally-Closed Conformation (Lc1
Subtype)
pdb|3UU5|A Chain A, The Glic Pentameric Ligand-Gated Ion Channel Loop2-20'
Mutant Reduced In Solution
pdb|3UU5|B Chain B, The Glic Pentameric Ligand-Gated Ion Channel Loop2-20'
Mutant Reduced In Solution
pdb|3UU5|C Chain C, The Glic Pentameric Ligand-Gated Ion Channel Loop2-20'
Mutant Reduced In Solution
pdb|3UU5|D Chain D, The Glic Pentameric Ligand-Gated Ion Channel Loop2-20'
Mutant Reduced In Solution
pdb|3UU5|E Chain E, The Glic Pentameric Ligand-Gated Ion Channel Loop2-20'
Mutant Reduced In Solution
Length = 321
Score = 45.4 bits (106), Expect = 7e-06, Method: Composition-based stats.
Identities = 26/83 (31%), Positives = 42/83 (50%), Gaps = 7/83 (8%)
Query: 5 WVDPRLAHN-AKENYLGEINLRDRVWTPHLYLVNEHDSRIMGSGRQDIL-ISVQPDGTVL 62
W D RLA + + + + +W P + VN ++R D++ ISV PDGTV
Sbjct: 51 WKDRRLAFDPVRSGVRVKTYEPEAIWIPEIRFVNVENAR-----DADVVDISVSPDGTVQ 105
Query: 63 YSTRLKVTLLCLMNLKKFPFDEQ 85
Y R +L ++ +++PFD Q
Sbjct: 106 YLERFSARVLSPLDFRRYPFDSQ 128
>pdb|3TLW|A Chain A, The Glic Pentameric Ligand-Gated Ion Channel Loop2-21'
Oxidized Mutant In A Locally-Closed Conformation (Lc2
Subtype)
pdb|3TLW|B Chain B, The Glic Pentameric Ligand-Gated Ion Channel Loop2-21'
Oxidized Mutant In A Locally-Closed Conformation (Lc2
Subtype)
pdb|3TLW|C Chain C, The Glic Pentameric Ligand-Gated Ion Channel Loop2-21'
Oxidized Mutant In A Locally-Closed Conformation (Lc2
Subtype)
pdb|3TLW|D Chain D, The Glic Pentameric Ligand-Gated Ion Channel Loop2-21'
Oxidized Mutant In A Locally-Closed Conformation (Lc2
Subtype)
pdb|3TLW|E Chain E, The Glic Pentameric Ligand-Gated Ion Channel Loop2-21'
Oxidized Mutant In A Locally-Closed Conformation (Lc2
Subtype)
pdb|3UU4|A Chain A, The Glic Pentameric Ligand-Gated Ion Channel Loop2-21'
Mutant Reduced In The Crystal In A Locally-Closed
Conformation (Lc1 Subtype)
pdb|3UU4|B Chain B, The Glic Pentameric Ligand-Gated Ion Channel Loop2-21'
Mutant Reduced In The Crystal In A Locally-Closed
Conformation (Lc1 Subtype)
pdb|3UU4|C Chain C, The Glic Pentameric Ligand-Gated Ion Channel Loop2-21'
Mutant Reduced In The Crystal In A Locally-Closed
Conformation (Lc1 Subtype)
pdb|3UU4|D Chain D, The Glic Pentameric Ligand-Gated Ion Channel Loop2-21'
Mutant Reduced In The Crystal In A Locally-Closed
Conformation (Lc1 Subtype)
pdb|3UU4|E Chain E, The Glic Pentameric Ligand-Gated Ion Channel Loop2-21'
Mutant Reduced In The Crystal In A Locally-Closed
Conformation (Lc1 Subtype)
pdb|3UUB|A Chain A, The Glic Pentameric Ligand-Gated Ion Channel Loop2-21'
Mutant Reduced In Solution
pdb|3UUB|B Chain B, The Glic Pentameric Ligand-Gated Ion Channel Loop2-21'
Mutant Reduced In Solution
pdb|3UUB|C Chain C, The Glic Pentameric Ligand-Gated Ion Channel Loop2-21'
Mutant Reduced In Solution
pdb|3UUB|D Chain D, The Glic Pentameric Ligand-Gated Ion Channel Loop2-21'
Mutant Reduced In Solution
pdb|3UUB|E Chain E, The Glic Pentameric Ligand-Gated Ion Channel Loop2-21'
Mutant Reduced In Solution
pdb|3UUB|F Chain F, The Glic Pentameric Ligand-Gated Ion Channel Loop2-21'
Mutant Reduced In Solution
pdb|3UUB|G Chain G, The Glic Pentameric Ligand-Gated Ion Channel Loop2-21'
Mutant Reduced In Solution
pdb|3UUB|H Chain H, The Glic Pentameric Ligand-Gated Ion Channel Loop2-21'
Mutant Reduced In Solution
pdb|3UUB|I Chain I, The Glic Pentameric Ligand-Gated Ion Channel Loop2-21'
Mutant Reduced In Solution
pdb|3UUB|J Chain J, The Glic Pentameric Ligand-Gated Ion Channel Loop2-21'
Mutant Reduced In Solution
Length = 321
Score = 45.4 bits (106), Expect = 7e-06, Method: Composition-based stats.
Identities = 26/83 (31%), Positives = 42/83 (50%), Gaps = 7/83 (8%)
Query: 5 WVDPRLAHN-AKENYLGEINLRDRVWTPHLYLVNEHDSRIMGSGRQDIL-ISVQPDGTVL 62
W D RLA + + + + +W P + VN ++R D++ ISV PDGTV
Sbjct: 51 WKDRRLAFDPVRSGVRVKTYEPEAIWIPEIRFVNVENAR-----DADVVDISVSPDGTVQ 105
Query: 63 YSTRLKVTLLCLMNLKKFPFDEQ 85
Y R +L ++ +++PFD Q
Sbjct: 106 YLERFSARVLSPLDFRRYPFDSQ 128
>pdb|3TLV|A Chain A, The Glic Pentameric Ligand-Gated Ion Channel Loop2-22'
Oxidized Mutant In A Locally-Closed Conformation (Lc3
Subtype)
pdb|3TLV|B Chain B, The Glic Pentameric Ligand-Gated Ion Channel Loop2-22'
Oxidized Mutant In A Locally-Closed Conformation (Lc3
Subtype)
pdb|3TLV|C Chain C, The Glic Pentameric Ligand-Gated Ion Channel Loop2-22'
Oxidized Mutant In A Locally-Closed Conformation (Lc3
Subtype)
pdb|3TLV|D Chain D, The Glic Pentameric Ligand-Gated Ion Channel Loop2-22'
Oxidized Mutant In A Locally-Closed Conformation (Lc3
Subtype)
pdb|3TLV|E Chain E, The Glic Pentameric Ligand-Gated Ion Channel Loop2-22'
Oxidized Mutant In A Locally-Closed Conformation (Lc3
Subtype)
pdb|3UU6|A Chain A, The Glic Pentameric Ligand-Gated Ion Channel Loop2-22'
Mutant Reduced In Solution
pdb|3UU6|B Chain B, The Glic Pentameric Ligand-Gated Ion Channel Loop2-22'
Mutant Reduced In Solution
pdb|3UU6|C Chain C, The Glic Pentameric Ligand-Gated Ion Channel Loop2-22'
Mutant Reduced In Solution
pdb|3UU6|D Chain D, The Glic Pentameric Ligand-Gated Ion Channel Loop2-22'
Mutant Reduced In Solution
pdb|3UU6|E Chain E, The Glic Pentameric Ligand-Gated Ion Channel Loop2-22'
Mutant Reduced In Solution
Length = 321
Score = 45.4 bits (106), Expect = 7e-06, Method: Composition-based stats.
Identities = 26/83 (31%), Positives = 42/83 (50%), Gaps = 7/83 (8%)
Query: 5 WVDPRLAHN-AKENYLGEINLRDRVWTPHLYLVNEHDSRIMGSGRQDIL-ISVQPDGTVL 62
W D RLA + + + + +W P + VN ++R D++ ISV PDGTV
Sbjct: 51 WKDRRLAFDPVRSGVRVKTYEPEAIWIPEIRFVNVENAR-----DADVVDISVSPDGTVQ 105
Query: 63 YSTRLKVTLLCLMNLKKFPFDEQ 85
Y R +L ++ +++PFD Q
Sbjct: 106 YLERFSARVLSPLDFRRYPFDSQ 128
>pdb|3TLU|A Chain A, The Glic Pentameric Ligand-Gated Ion Channel Loop2-24'
Oxidized Mutant In A Locally-Closed Conformation (Lc1
Subtype)
pdb|3TLU|B Chain B, The Glic Pentameric Ligand-Gated Ion Channel Loop2-24'
Oxidized Mutant In A Locally-Closed Conformation (Lc1
Subtype)
pdb|3TLU|C Chain C, The Glic Pentameric Ligand-Gated Ion Channel Loop2-24'
Oxidized Mutant In A Locally-Closed Conformation (Lc1
Subtype)
pdb|3TLU|D Chain D, The Glic Pentameric Ligand-Gated Ion Channel Loop2-24'
Oxidized Mutant In A Locally-Closed Conformation (Lc1
Subtype)
pdb|3TLU|E Chain E, The Glic Pentameric Ligand-Gated Ion Channel Loop2-24'
Oxidized Mutant In A Locally-Closed Conformation (Lc1
Subtype)
pdb|3UU8|A Chain A, The Glic Pentameric Ligand-Gated Ion Channel Loop2-24'
Mutant Reduced In Solution
pdb|3UU8|B Chain B, The Glic Pentameric Ligand-Gated Ion Channel Loop2-24'
Mutant Reduced In Solution
pdb|3UU8|C Chain C, The Glic Pentameric Ligand-Gated Ion Channel Loop2-24'
Mutant Reduced In Solution
pdb|3UU8|D Chain D, The Glic Pentameric Ligand-Gated Ion Channel Loop2-24'
Mutant Reduced In Solution
pdb|3UU8|E Chain E, The Glic Pentameric Ligand-Gated Ion Channel Loop2-24'
Mutant Reduced In Solution
Length = 321
Score = 45.4 bits (106), Expect = 7e-06, Method: Composition-based stats.
Identities = 26/83 (31%), Positives = 42/83 (50%), Gaps = 7/83 (8%)
Query: 5 WVDPRLAHN-AKENYLGEINLRDRVWTPHLYLVNEHDSRIMGSGRQDIL-ISVQPDGTVL 62
W D RLA + + + + +W P + VN ++R D++ ISV PDGTV
Sbjct: 51 WKDRRLAFDPVRSGVRVKTYEPEAIWIPEIRFVNVENAR-----DADVVDISVSPDGTVQ 105
Query: 63 YSTRLKVTLLCLMNLKKFPFDEQ 85
Y R +L ++ +++PFD Q
Sbjct: 106 YLERFSARVLSPLDFRRYPFDSQ 128
>pdb|3TLS|A Chain A, The Glic Pentameric Ligand-Gated Ion Channel E19'p Mutant
In A Locally-Closed Conformation (Lc2 Subtype)
pdb|3TLS|B Chain B, The Glic Pentameric Ligand-Gated Ion Channel E19'p Mutant
In A Locally-Closed Conformation (Lc2 Subtype)
pdb|3TLS|C Chain C, The Glic Pentameric Ligand-Gated Ion Channel E19'p Mutant
In A Locally-Closed Conformation (Lc2 Subtype)
pdb|3TLS|D Chain D, The Glic Pentameric Ligand-Gated Ion Channel E19'p Mutant
In A Locally-Closed Conformation (Lc2 Subtype)
pdb|3TLS|E Chain E, The Glic Pentameric Ligand-Gated Ion Channel E19'p Mutant
In A Locally-Closed Conformation (Lc2 Subtype)
Length = 321
Score = 45.4 bits (106), Expect = 7e-06, Method: Composition-based stats.
Identities = 26/83 (31%), Positives = 42/83 (50%), Gaps = 7/83 (8%)
Query: 5 WVDPRLAHN-AKENYLGEINLRDRVWTPHLYLVNEHDSRIMGSGRQDIL-ISVQPDGTVL 62
W D RLA + + + + +W P + VN ++R D++ ISV PDGTV
Sbjct: 51 WKDRRLAFDPVRSGVRVKTYEPEAIWIPEIRFVNVENAR-----DADVVDISVSPDGTVQ 105
Query: 63 YSTRLKVTLLCLMNLKKFPFDEQ 85
Y R +L ++ +++PFD Q
Sbjct: 106 YLERFSARVLSPLDFRRYPFDSQ 128
>pdb|4ILC|A Chain A, The Glic Pentameric Ligand-gated Ion Channel In Complex
With Sulfates
pdb|4ILC|B Chain B, The Glic Pentameric Ligand-gated Ion Channel In Complex
With Sulfates
pdb|4ILC|C Chain C, The Glic Pentameric Ligand-gated Ion Channel In Complex
With Sulfates
pdb|4ILC|D Chain D, The Glic Pentameric Ligand-gated Ion Channel In Complex
With Sulfates
pdb|4ILC|E Chain E, The Glic Pentameric Ligand-gated Ion Channel In Complex
With Sulfates
Length = 320
Score = 45.4 bits (106), Expect = 7e-06, Method: Composition-based stats.
Identities = 26/83 (31%), Positives = 42/83 (50%), Gaps = 7/83 (8%)
Query: 5 WVDPRLAHN-AKENYLGEINLRDRVWTPHLYLVNEHDSRIMGSGRQDIL-ISVQPDGTVL 62
W D RLA + + + + +W P + VN ++R D++ ISV PDGTV
Sbjct: 51 WKDRRLAFDPVRSGVRVKTYEPEAIWIPEIRFVNVENAR-----DADVVDISVSPDGTVQ 105
Query: 63 YSTRLKVTLLCLMNLKKFPFDEQ 85
Y R +L ++ +++PFD Q
Sbjct: 106 YLERFSARVLSPLDFRRYPFDSQ 128
>pdb|4IL9|A Chain A, The Pentameric Ligand-gated Ion Channel Glic A237f In
Complex With Bromide
pdb|4IL9|B Chain B, The Pentameric Ligand-gated Ion Channel Glic A237f In
Complex With Bromide
pdb|4IL9|C Chain C, The Pentameric Ligand-gated Ion Channel Glic A237f In
Complex With Bromide
pdb|4IL9|D Chain D, The Pentameric Ligand-gated Ion Channel Glic A237f In
Complex With Bromide
pdb|4IL9|E Chain E, The Pentameric Ligand-gated Ion Channel Glic A237f In
Complex With Bromide
pdb|4ILA|A Chain A, The Pentameric Ligand-gated Ion Channel Glic A237f In
Complex With Cesium
pdb|4ILA|B Chain B, The Pentameric Ligand-gated Ion Channel Glic A237f In
Complex With Cesium
pdb|4ILA|C Chain C, The Pentameric Ligand-gated Ion Channel Glic A237f In
Complex With Cesium
pdb|4ILA|D Chain D, The Pentameric Ligand-gated Ion Channel Glic A237f In
Complex With Cesium
pdb|4ILA|E Chain E, The Pentameric Ligand-gated Ion Channel Glic A237f In
Complex With Cesium
pdb|4ILB|A Chain A, The Pentameric Ligand-gated Ion Channel Glic A237f In
Complex With Rubidium
pdb|4ILB|B Chain B, The Pentameric Ligand-gated Ion Channel Glic A237f In
Complex With Rubidium
pdb|4ILB|C Chain C, The Pentameric Ligand-gated Ion Channel Glic A237f In
Complex With Rubidium
pdb|4ILB|D Chain D, The Pentameric Ligand-gated Ion Channel Glic A237f In
Complex With Rubidium
pdb|4ILB|E Chain E, The Pentameric Ligand-gated Ion Channel Glic A237f In
Complex With Rubidium
Length = 320
Score = 45.4 bits (106), Expect = 7e-06, Method: Composition-based stats.
Identities = 26/83 (31%), Positives = 42/83 (50%), Gaps = 7/83 (8%)
Query: 5 WVDPRLAHN-AKENYLGEINLRDRVWTPHLYLVNEHDSRIMGSGRQDIL-ISVQPDGTVL 62
W D RLA + + + + +W P + VN ++R D++ ISV PDGTV
Sbjct: 51 WKDRRLAFDPVRSGVRVKTYEPEAIWIPEIRFVNVENAR-----DADVVDISVSPDGTVQ 105
Query: 63 YSTRLKVTLLCLMNLKKFPFDEQ 85
Y R +L ++ +++PFD Q
Sbjct: 106 YLERFSARVLSPLDFRRYPFDSQ 128
>pdb|3EI0|A Chain A, Structure Of The E221a Mutant Of The Gloebacter Violaceus
Pentameric Ligand Gated Ion Channnel (Glic)
pdb|3EI0|B Chain B, Structure Of The E221a Mutant Of The Gloebacter Violaceus
Pentameric Ligand Gated Ion Channnel (Glic)
pdb|3EI0|C Chain C, Structure Of The E221a Mutant Of The Gloebacter Violaceus
Pentameric Ligand Gated Ion Channnel (Glic)
pdb|3EI0|D Chain D, Structure Of The E221a Mutant Of The Gloebacter Violaceus
Pentameric Ligand Gated Ion Channnel (Glic)
pdb|3EI0|E Chain E, Structure Of The E221a Mutant Of The Gloebacter Violaceus
Pentameric Ligand Gated Ion Channnel (Glic)
Length = 317
Score = 45.4 bits (106), Expect = 8e-06, Method: Composition-based stats.
Identities = 26/83 (31%), Positives = 42/83 (50%), Gaps = 7/83 (8%)
Query: 5 WVDPRLAHN-AKENYLGEINLRDRVWTPHLYLVNEHDSRIMGSGRQDIL-ISVQPDGTVL 62
W D RLA + + + + +W P + VN ++R D++ ISV PDGTV
Sbjct: 47 WKDRRLAFDPVRSGVRVKTYEPEAIWIPEIRFVNVENAR-----DADVVDISVSPDGTVQ 101
Query: 63 YSTRLKVTLLCLMNLKKFPFDEQ 85
Y R +L ++ +++PFD Q
Sbjct: 102 YLERFSARVLSPLDFRRYPFDSQ 124
>pdb|3P4W|A Chain A, Structure Of Desflurane Bound To A Pentameric Ligand-Gated
Ion Channel, Glic
pdb|3P4W|B Chain B, Structure Of Desflurane Bound To A Pentameric Ligand-Gated
Ion Channel, Glic
pdb|3P4W|C Chain C, Structure Of Desflurane Bound To A Pentameric Ligand-Gated
Ion Channel, Glic
pdb|3P4W|D Chain D, Structure Of Desflurane Bound To A Pentameric Ligand-Gated
Ion Channel, Glic
pdb|3P4W|E Chain E, Structure Of Desflurane Bound To A Pentameric Ligand-Gated
Ion Channel, Glic
pdb|3P50|A Chain A, Structure Of Propofol Bound To A Pentameric Ligand-Gated
Ion Channel, Glic
pdb|3P50|B Chain B, Structure Of Propofol Bound To A Pentameric Ligand-Gated
Ion Channel, Glic
pdb|3P50|C Chain C, Structure Of Propofol Bound To A Pentameric Ligand-Gated
Ion Channel, Glic
pdb|3P50|D Chain D, Structure Of Propofol Bound To A Pentameric Ligand-Gated
Ion Channel, Glic
pdb|3P50|E Chain E, Structure Of Propofol Bound To A Pentameric Ligand-Gated
Ion Channel, Glic
Length = 318
Score = 45.4 bits (106), Expect = 8e-06, Method: Composition-based stats.
Identities = 26/83 (31%), Positives = 42/83 (50%), Gaps = 7/83 (8%)
Query: 5 WVDPRLAHN-AKENYLGEINLRDRVWTPHLYLVNEHDSRIMGSGRQDIL-ISVQPDGTVL 62
W D RLA + + + + +W P + VN ++R D++ ISV PDGTV
Sbjct: 47 WKDRRLAFDPVRSGVRVKTYEPEAIWIPEIRFVNVENAR-----DADVVDISVSPDGTVQ 101
Query: 63 YSTRLKVTLLCLMNLKKFPFDEQ 85
Y R +L ++ +++PFD Q
Sbjct: 102 YLERFSARVLSPLDFRRYPFDSQ 124
>pdb|3EHZ|A Chain A, X-Ray Structure Of The Pentameric Ligand Gated Ion Channel
Of Gloebacter Violaceus (Glic) In A Presumptive Open
Conformation
pdb|3EHZ|B Chain B, X-Ray Structure Of The Pentameric Ligand Gated Ion Channel
Of Gloebacter Violaceus (Glic) In A Presumptive Open
Conformation
pdb|3EHZ|C Chain C, X-Ray Structure Of The Pentameric Ligand Gated Ion Channel
Of Gloebacter Violaceus (Glic) In A Presumptive Open
Conformation
pdb|3EHZ|D Chain D, X-Ray Structure Of The Pentameric Ligand Gated Ion Channel
Of Gloebacter Violaceus (Glic) In A Presumptive Open
Conformation
pdb|3EHZ|E Chain E, X-Ray Structure Of The Pentameric Ligand Gated Ion Channel
Of Gloebacter Violaceus (Glic) In A Presumptive Open
Conformation
pdb|2XQ3|A Chain A, Pentameric Ligand Gated Ion Channel Glic In Complex With
Br-Lidocaine
pdb|2XQ3|B Chain B, Pentameric Ligand Gated Ion Channel Glic In Complex With
Br-Lidocaine
pdb|2XQ3|C Chain C, Pentameric Ligand Gated Ion Channel Glic In Complex With
Br-Lidocaine
pdb|2XQ3|D Chain D, Pentameric Ligand Gated Ion Channel Glic In Complex With
Br-Lidocaine
pdb|2XQ3|E Chain E, Pentameric Ligand Gated Ion Channel Glic In Complex With
Br-Lidocaine
pdb|2XQ4|A Chain A, Pentameric Ligand Gated Ion Channel Glic In Complex With
Tetramethylarsonium (Tmas)
pdb|2XQ4|B Chain B, Pentameric Ligand Gated Ion Channel Glic In Complex With
Tetramethylarsonium (Tmas)
pdb|2XQ4|C Chain C, Pentameric Ligand Gated Ion Channel Glic In Complex With
Tetramethylarsonium (Tmas)
pdb|2XQ4|D Chain D, Pentameric Ligand Gated Ion Channel Glic In Complex With
Tetramethylarsonium (Tmas)
pdb|2XQ4|E Chain E, Pentameric Ligand Gated Ion Channel Glic In Complex With
Tetramethylarsonium (Tmas)
pdb|2XQ5|A Chain A, Pentameric Ligand Gated Ion Channel Glic In Complex With
Tetraethylarsonium (Teas)
pdb|2XQ5|B Chain B, Pentameric Ligand Gated Ion Channel Glic In Complex With
Tetraethylarsonium (Teas)
pdb|2XQ5|C Chain C, Pentameric Ligand Gated Ion Channel Glic In Complex With
Tetraethylarsonium (Teas)
pdb|2XQ5|D Chain D, Pentameric Ligand Gated Ion Channel Glic In Complex With
Tetraethylarsonium (Teas)
pdb|2XQ5|E Chain E, Pentameric Ligand Gated Ion Channel Glic In Complex With
Tetraethylarsonium (Teas)
pdb|2XQ6|A Chain A, Pentameric Ligand Gated Ion Channel Glic In Complex With
Cesium Ion (Cs+)
pdb|2XQ6|B Chain B, Pentameric Ligand Gated Ion Channel Glic In Complex With
Cesium Ion (Cs+)
pdb|2XQ6|C Chain C, Pentameric Ligand Gated Ion Channel Glic In Complex With
Cesium Ion (Cs+)
pdb|2XQ6|D Chain D, Pentameric Ligand Gated Ion Channel Glic In Complex With
Cesium Ion (Cs+)
pdb|2XQ6|E Chain E, Pentameric Ligand Gated Ion Channel Glic In Complex With
Cesium Ion (Cs+)
pdb|2XQ7|A Chain A, Pentameric Ligand Gated Ion Channel Glic In Complex With
Cadmium Ion (Cd2+)
pdb|2XQ7|B Chain B, Pentameric Ligand Gated Ion Channel Glic In Complex With
Cadmium Ion (Cd2+)
pdb|2XQ7|C Chain C, Pentameric Ligand Gated Ion Channel Glic In Complex With
Cadmium Ion (Cd2+)
pdb|2XQ7|D Chain D, Pentameric Ligand Gated Ion Channel Glic In Complex With
Cadmium Ion (Cd2+)
pdb|2XQ7|E Chain E, Pentameric Ligand Gated Ion Channel Glic In Complex With
Cadmium Ion (Cd2+)
pdb|2XQ8|A Chain A, Pentameric Ligand Gated Ion Channel Glic In Complex With
Zinc Ion (Zn2+)
pdb|2XQ8|B Chain B, Pentameric Ligand Gated Ion Channel Glic In Complex With
Zinc Ion (Zn2+)
pdb|2XQ8|C Chain C, Pentameric Ligand Gated Ion Channel Glic In Complex With
Zinc Ion (Zn2+)
pdb|2XQ8|D Chain D, Pentameric Ligand Gated Ion Channel Glic In Complex With
Zinc Ion (Zn2+)
pdb|2XQ8|E Chain E, Pentameric Ligand Gated Ion Channel Glic In Complex With
Zinc Ion (Zn2+)
pdb|2XQA|A Chain A, Pentameric Ligand Gated Ion Channel Glic In Complex With
Tetrabutylantimony (Tbsb)
pdb|2XQA|B Chain B, Pentameric Ligand Gated Ion Channel Glic In Complex With
Tetrabutylantimony (Tbsb)
pdb|2XQA|C Chain C, Pentameric Ligand Gated Ion Channel Glic In Complex With
Tetrabutylantimony (Tbsb)
pdb|2XQA|D Chain D, Pentameric Ligand Gated Ion Channel Glic In Complex With
Tetrabutylantimony (Tbsb)
pdb|2XQA|E Chain E, Pentameric Ligand Gated Ion Channel Glic In Complex With
Tetrabutylantimony (Tbsb)
pdb|4F8H|A Chain A, X-Ray Structure Of The Anesthetic Ketamine Bound To The
Glic Pentameric Ligand-Gated Ion Channel
pdb|4F8H|B Chain B, X-Ray Structure Of The Anesthetic Ketamine Bound To The
Glic Pentameric Ligand-Gated Ion Channel
pdb|4F8H|C Chain C, X-Ray Structure Of The Anesthetic Ketamine Bound To The
Glic Pentameric Ligand-Gated Ion Channel
pdb|4F8H|D Chain D, X-Ray Structure Of The Anesthetic Ketamine Bound To The
Glic Pentameric Ligand-Gated Ion Channel
pdb|4F8H|E Chain E, X-Ray Structure Of The Anesthetic Ketamine Bound To The
Glic Pentameric Ligand-Gated Ion Channel
Length = 317
Score = 45.4 bits (106), Expect = 8e-06, Method: Composition-based stats.
Identities = 26/83 (31%), Positives = 42/83 (50%), Gaps = 7/83 (8%)
Query: 5 WVDPRLAHN-AKENYLGEINLRDRVWTPHLYLVNEHDSRIMGSGRQDIL-ISVQPDGTVL 62
W D RLA + + + + +W P + VN ++R D++ ISV PDGTV
Sbjct: 47 WKDRRLAFDPVRSGVRVKTYEPEAIWIPEIRFVNVENAR-----DADVVDISVSPDGTVQ 101
Query: 63 YSTRLKVTLLCLMNLKKFPFDEQ 85
Y R +L ++ +++PFD Q
Sbjct: 102 YLERFSARVLSPLDFRRYPFDSQ 124
>pdb|2XQ9|A Chain A, Pentameric Ligand Gated Ion Channel Glic Mutant E221a In
Complex With Tetraethylarsonium (Teas)
pdb|2XQ9|B Chain B, Pentameric Ligand Gated Ion Channel Glic Mutant E221a In
Complex With Tetraethylarsonium (Teas)
pdb|2XQ9|C Chain C, Pentameric Ligand Gated Ion Channel Glic Mutant E221a In
Complex With Tetraethylarsonium (Teas)
pdb|2XQ9|D Chain D, Pentameric Ligand Gated Ion Channel Glic Mutant E221a In
Complex With Tetraethylarsonium (Teas)
pdb|2XQ9|E Chain E, Pentameric Ligand Gated Ion Channel Glic Mutant E221a In
Complex With Tetraethylarsonium (Teas)
Length = 317
Score = 45.4 bits (106), Expect = 8e-06, Method: Composition-based stats.
Identities = 26/83 (31%), Positives = 42/83 (50%), Gaps = 7/83 (8%)
Query: 5 WVDPRLAHN-AKENYLGEINLRDRVWTPHLYLVNEHDSRIMGSGRQDIL-ISVQPDGTVL 62
W D RLA + + + + +W P + VN ++R D++ ISV PDGTV
Sbjct: 47 WKDRRLAFDPVRSGVRVKTYEPEAIWIPEIRFVNVENAR-----DADVVDISVSPDGTVQ 101
Query: 63 YSTRLKVTLLCLMNLKKFPFDEQ 85
Y R +L ++ +++PFD Q
Sbjct: 102 YLERFSARVLSPLDFRRYPFDSQ 124
>pdb|3LSV|A Chain A, Structure Of The A237f Mutant Of The Pentameric Ligand
Gated Channel From Gloeobacter Violaceus
pdb|3LSV|B Chain B, Structure Of The A237f Mutant Of The Pentameric Ligand
Gated Channel From Gloeobacter Violaceus
pdb|3LSV|C Chain C, Structure Of The A237f Mutant Of The Pentameric Ligand
Gated Channel From Gloeobacter Violaceus
pdb|3LSV|D Chain D, Structure Of The A237f Mutant Of The Pentameric Ligand
Gated Channel From Gloeobacter Violaceus
pdb|3LSV|E Chain E, Structure Of The A237f Mutant Of The Pentameric Ligand
Gated Channel From Gloeobacter Violaceus
Length = 317
Score = 45.4 bits (106), Expect = 8e-06, Method: Composition-based stats.
Identities = 26/83 (31%), Positives = 42/83 (50%), Gaps = 7/83 (8%)
Query: 5 WVDPRLAHN-AKENYLGEINLRDRVWTPHLYLVNEHDSRIMGSGRQDIL-ISVQPDGTVL 62
W D RLA + + + + +W P + VN ++R D++ ISV PDGTV
Sbjct: 47 WKDRRLAFDPVRSGVRVKTYEPEAIWIPEIRFVNVENAR-----DADVVDISVSPDGTVQ 101
Query: 63 YSTRLKVTLLCLMNLKKFPFDEQ 85
Y R +L ++ +++PFD Q
Sbjct: 102 YLERFSARVLSPLDFRRYPFDSQ 124
>pdb|3EAM|A Chain A, An Open-Pore Structure Of A Bacterial Pentameric Ligand-
Gated Ion Channel
pdb|3EAM|B Chain B, An Open-Pore Structure Of A Bacterial Pentameric Ligand-
Gated Ion Channel
pdb|3EAM|C Chain C, An Open-Pore Structure Of A Bacterial Pentameric Ligand-
Gated Ion Channel
pdb|3EAM|D Chain D, An Open-Pore Structure Of A Bacterial Pentameric Ligand-
Gated Ion Channel
pdb|3EAM|E Chain E, An Open-Pore Structure Of A Bacterial Pentameric Ligand-
Gated Ion Channel
pdb|4HFI|A Chain A, The Glic Pentameric Ligand-gated Ion Channel At 2.4 A
Resolution
pdb|4HFI|B Chain B, The Glic Pentameric Ligand-gated Ion Channel At 2.4 A
Resolution
pdb|4HFI|C Chain C, The Glic Pentameric Ligand-gated Ion Channel At 2.4 A
Resolution
pdb|4HFI|D Chain D, The Glic Pentameric Ligand-gated Ion Channel At 2.4 A
Resolution
pdb|4HFI|E Chain E, The Glic Pentameric Ligand-gated Ion Channel At 2.4 A
Resolution
pdb|4IL4|A Chain A, The Pentameric Ligand-gated Ion Channel Glic In Complex
With Se-ddm
pdb|4IL4|B Chain B, The Pentameric Ligand-gated Ion Channel Glic In Complex
With Se-ddm
pdb|4IL4|C Chain C, The Pentameric Ligand-gated Ion Channel Glic In Complex
With Se-ddm
pdb|4IL4|D Chain D, The Pentameric Ligand-gated Ion Channel Glic In Complex
With Se-ddm
pdb|4IL4|E Chain E, The Pentameric Ligand-gated Ion Channel Glic In Complex
With Se-ddm
Length = 317
Score = 45.4 bits (106), Expect = 8e-06, Method: Composition-based stats.
Identities = 26/83 (31%), Positives = 42/83 (50%), Gaps = 7/83 (8%)
Query: 5 WVDPRLAHN-AKENYLGEINLRDRVWTPHLYLVNEHDSRIMGSGRQDIL-ISVQPDGTVL 62
W D RLA + + + + +W P + VN ++R D++ ISV PDGTV
Sbjct: 47 WKDRRLAFDPVRSGVRVKTYEPEAIWIPEIRFVNVENAR-----DADVVDISVSPDGTVQ 101
Query: 63 YSTRLKVTLLCLMNLKKFPFDEQ 85
Y R +L ++ +++PFD Q
Sbjct: 102 YLERFSARVLSPLDFRRYPFDSQ 124
>pdb|2BG9|C Chain C, Refined Structure Of The Nicotinic Acetylcholine Receptor
At 4a Resolution
Length = 369
Score = 41.2 bits (95), Expect = 2e-04, Method: Composition-based stats.
Identities = 29/91 (31%), Positives = 46/91 (50%), Gaps = 4/91 (4%)
Query: 1 MRYRWVDPRLAHNAKE-NYLGEINLR-DRVWTPHLYLVNEHDSRIMGSGRQDILISVQPD 58
M + W D RL NA E + + + LR + +W P + L N +D + + ++L V+P+
Sbjct: 58 MDHAWYDHRLTWNASEYSDISILRLRPELIWIPDIVLQNNNDGQYNVAYFCNVL--VRPN 115
Query: 59 GTVLYSTRLKVTLLCLMNLKKFPFDEQECPL 89
G V + C +N+ FPFD Q C L
Sbjct: 116 GYVTWLPPAIFRSSCPINVLYFPFDWQNCSL 146
>pdb|4AQ5|C Chain C, Gating Movement In Acetylcholine Receptor Analysed By
Time- Resolved Electron Cryo-Microscopy (Closed Class)
pdb|4AQ9|C Chain C, Gating Movement In Acetylcholine Receptor Analysed By
Time-Resolved Electron Cryo-Microscopy (Open Class)
Length = 522
Score = 40.4 bits (93), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 29/91 (31%), Positives = 46/91 (50%), Gaps = 4/91 (4%)
Query: 1 MRYRWVDPRLAHNAKE-NYLGEINLR-DRVWTPHLYLVNEHDSRIMGSGRQDILISVQPD 58
M + W D RL NA E + + + LR + +W P + L N +D + + ++L V+P+
Sbjct: 79 MDHAWYDHRLTWNASEYSDISILRLRPELIWIPDIVLQNNNDGQYNVAYFCNVL--VRPN 136
Query: 59 GTVLYSTRLKVTLLCLMNLKKFPFDEQECPL 89
G V + C +N+ FPFD Q C L
Sbjct: 137 GYVTWLPPAIFRSSCPINVLYFPFDWQNCSL 167
>pdb|3UQ5|A Chain A, X-Ray Structure Of A Pentameric Ligand Gated Ion Channel
From Erwinia Chrysanthemi (Elic) Mutant L240a F247l (L9a
F16l) In The Presence Of 10 Mm Cysteamine
pdb|3UQ5|B Chain B, X-Ray Structure Of A Pentameric Ligand Gated Ion Channel
From Erwinia Chrysanthemi (Elic) Mutant L240a F247l (L9a
F16l) In The Presence Of 10 Mm Cysteamine
pdb|3UQ5|C Chain C, X-Ray Structure Of A Pentameric Ligand Gated Ion Channel
From Erwinia Chrysanthemi (Elic) Mutant L240a F247l (L9a
F16l) In The Presence Of 10 Mm Cysteamine
pdb|3UQ5|D Chain D, X-Ray Structure Of A Pentameric Ligand Gated Ion Channel
From Erwinia Chrysanthemi (Elic) Mutant L240a F247l (L9a
F16l) In The Presence Of 10 Mm Cysteamine
pdb|3UQ5|E Chain E, X-Ray Structure Of A Pentameric Ligand Gated Ion Channel
From Erwinia Chrysanthemi (Elic) Mutant L240a F247l (L9a
F16l) In The Presence Of 10 Mm Cysteamine
pdb|3UQ5|F Chain F, X-Ray Structure Of A Pentameric Ligand Gated Ion Channel
From Erwinia Chrysanthemi (Elic) Mutant L240a F247l (L9a
F16l) In The Presence Of 10 Mm Cysteamine
pdb|3UQ5|G Chain G, X-Ray Structure Of A Pentameric Ligand Gated Ion Channel
From Erwinia Chrysanthemi (Elic) Mutant L240a F247l (L9a
F16l) In The Presence Of 10 Mm Cysteamine
pdb|3UQ5|H Chain H, X-Ray Structure Of A Pentameric Ligand Gated Ion Channel
From Erwinia Chrysanthemi (Elic) Mutant L240a F247l (L9a
F16l) In The Presence Of 10 Mm Cysteamine
pdb|3UQ5|I Chain I, X-Ray Structure Of A Pentameric Ligand Gated Ion Channel
From Erwinia Chrysanthemi (Elic) Mutant L240a F247l (L9a
F16l) In The Presence Of 10 Mm Cysteamine
pdb|3UQ5|J Chain J, X-Ray Structure Of A Pentameric Ligand Gated Ion Channel
From Erwinia Chrysanthemi (Elic) Mutant L240a F247l (L9a
F16l) In The Presence Of 10 Mm Cysteamine
Length = 324
Score = 38.5 bits (88), Expect = 9e-04, Method: Composition-based stats.
Identities = 25/77 (32%), Positives = 38/77 (49%), Gaps = 4/77 (5%)
Query: 16 ENYLGEINLRDRVWTPHLYLVNEHDSRIMGSGRQDILISVQPDGTVLYSTRLKVTLLCLM 75
EN E + + +W P L +N S G+ R + + PDG V+Y+ R + M
Sbjct: 61 ENTQIERWINNGLWVPALEFINVVGSPDTGNKR----LMLFPDGRVIYNARFLGSFSNDM 116
Query: 76 NLKKFPFDEQECPLVLE 92
+ + FPFD Q+ L LE
Sbjct: 117 DFRLFPFDRQQFVLELE 133
>pdb|3UQ7|A Chain A, X-Ray Structure Of A Pentameric Ligand Gated Ion Channel
From Erwinia Chrysanthemi (Elic) Mutant L240s F247l (L9s
F16l) In Presence Of 10 Mm Cysteamine
pdb|3UQ7|B Chain B, X-Ray Structure Of A Pentameric Ligand Gated Ion Channel
From Erwinia Chrysanthemi (Elic) Mutant L240s F247l (L9s
F16l) In Presence Of 10 Mm Cysteamine
pdb|3UQ7|C Chain C, X-Ray Structure Of A Pentameric Ligand Gated Ion Channel
From Erwinia Chrysanthemi (Elic) Mutant L240s F247l (L9s
F16l) In Presence Of 10 Mm Cysteamine
pdb|3UQ7|D Chain D, X-Ray Structure Of A Pentameric Ligand Gated Ion Channel
From Erwinia Chrysanthemi (Elic) Mutant L240s F247l (L9s
F16l) In Presence Of 10 Mm Cysteamine
pdb|3UQ7|E Chain E, X-Ray Structure Of A Pentameric Ligand Gated Ion Channel
From Erwinia Chrysanthemi (Elic) Mutant L240s F247l (L9s
F16l) In Presence Of 10 Mm Cysteamine
pdb|3UQ7|F Chain F, X-Ray Structure Of A Pentameric Ligand Gated Ion Channel
From Erwinia Chrysanthemi (Elic) Mutant L240s F247l (L9s
F16l) In Presence Of 10 Mm Cysteamine
pdb|3UQ7|G Chain G, X-Ray Structure Of A Pentameric Ligand Gated Ion Channel
From Erwinia Chrysanthemi (Elic) Mutant L240s F247l (L9s
F16l) In Presence Of 10 Mm Cysteamine
pdb|3UQ7|H Chain H, X-Ray Structure Of A Pentameric Ligand Gated Ion Channel
From Erwinia Chrysanthemi (Elic) Mutant L240s F247l (L9s
F16l) In Presence Of 10 Mm Cysteamine
pdb|3UQ7|I Chain I, X-Ray Structure Of A Pentameric Ligand Gated Ion Channel
From Erwinia Chrysanthemi (Elic) Mutant L240s F247l (L9s
F16l) In Presence Of 10 Mm Cysteamine
pdb|3UQ7|J Chain J, X-Ray Structure Of A Pentameric Ligand Gated Ion Channel
From Erwinia Chrysanthemi (Elic) Mutant L240s F247l (L9s
F16l) In Presence Of 10 Mm Cysteamine
Length = 324
Score = 38.5 bits (88), Expect = 9e-04, Method: Composition-based stats.
Identities = 25/77 (32%), Positives = 38/77 (49%), Gaps = 4/77 (5%)
Query: 16 ENYLGEINLRDRVWTPHLYLVNEHDSRIMGSGRQDILISVQPDGTVLYSTRLKVTLLCLM 75
EN E + + +W P L +N S G+ R + + PDG V+Y+ R + M
Sbjct: 61 ENTQIERWINNGLWVPALEFINVVGSPDTGNKR----LMLFPDGRVIYNARFLGSFSNDM 116
Query: 76 NLKKFPFDEQECPLVLE 92
+ + FPFD Q+ L LE
Sbjct: 117 DFRLFPFDRQQFVLELE 133
>pdb|3UQ4|A Chain A, X-Ray Structure Of A Pentameric Ligand Gated Ion Channel
From Erwinia Chrysanthemi (Elic) Mutant F247l (F16l)
pdb|3UQ4|B Chain B, X-Ray Structure Of A Pentameric Ligand Gated Ion Channel
From Erwinia Chrysanthemi (Elic) Mutant F247l (F16l)
pdb|3UQ4|C Chain C, X-Ray Structure Of A Pentameric Ligand Gated Ion Channel
From Erwinia Chrysanthemi (Elic) Mutant F247l (F16l)
pdb|3UQ4|D Chain D, X-Ray Structure Of A Pentameric Ligand Gated Ion Channel
From Erwinia Chrysanthemi (Elic) Mutant F247l (F16l)
pdb|3UQ4|E Chain E, X-Ray Structure Of A Pentameric Ligand Gated Ion Channel
From Erwinia Chrysanthemi (Elic) Mutant F247l (F16l)
pdb|3UQ4|F Chain F, X-Ray Structure Of A Pentameric Ligand Gated Ion Channel
From Erwinia Chrysanthemi (Elic) Mutant F247l (F16l)
pdb|3UQ4|G Chain G, X-Ray Structure Of A Pentameric Ligand Gated Ion Channel
From Erwinia Chrysanthemi (Elic) Mutant F247l (F16l)
pdb|3UQ4|H Chain H, X-Ray Structure Of A Pentameric Ligand Gated Ion Channel
From Erwinia Chrysanthemi (Elic) Mutant F247l (F16l)
pdb|3UQ4|I Chain I, X-Ray Structure Of A Pentameric Ligand Gated Ion Channel
From Erwinia Chrysanthemi (Elic) Mutant F247l (F16l)
pdb|3UQ4|J Chain J, X-Ray Structure Of A Pentameric Ligand Gated Ion Channel
From Erwinia Chrysanthemi (Elic) Mutant F247l (F16l)
Length = 324
Score = 38.5 bits (88), Expect = 0.001, Method: Composition-based stats.
Identities = 25/77 (32%), Positives = 38/77 (49%), Gaps = 4/77 (5%)
Query: 16 ENYLGEINLRDRVWTPHLYLVNEHDSRIMGSGRQDILISVQPDGTVLYSTRLKVTLLCLM 75
EN E + + +W P L +N S G+ R + + PDG V+Y+ R + M
Sbjct: 61 ENTQIERWINNGLWVPALEFINVVGSPDTGNKR----LMLFPDGRVIYNARFLGSFSNDM 116
Query: 76 NLKKFPFDEQECPLVLE 92
+ + FPFD Q+ L LE
Sbjct: 117 DFRLFPFDRQQFVLELE 133
>pdb|3RQU|A Chain A, Crystal Structure Of A Prokaryotic Pentameric Ligand-Gated
Ion Channel, Elic
pdb|3RQU|B Chain B, Crystal Structure Of A Prokaryotic Pentameric Ligand-Gated
Ion Channel, Elic
pdb|3RQU|C Chain C, Crystal Structure Of A Prokaryotic Pentameric Ligand-Gated
Ion Channel, Elic
pdb|3RQU|D Chain D, Crystal Structure Of A Prokaryotic Pentameric Ligand-Gated
Ion Channel, Elic
pdb|3RQU|E Chain E, Crystal Structure Of A Prokaryotic Pentameric Ligand-Gated
Ion Channel, Elic
pdb|3RQU|F Chain F, Crystal Structure Of A Prokaryotic Pentameric Ligand-Gated
Ion Channel, Elic
pdb|3RQU|G Chain G, Crystal Structure Of A Prokaryotic Pentameric Ligand-Gated
Ion Channel, Elic
pdb|3RQU|H Chain H, Crystal Structure Of A Prokaryotic Pentameric Ligand-Gated
Ion Channel, Elic
pdb|3RQU|I Chain I, Crystal Structure Of A Prokaryotic Pentameric Ligand-Gated
Ion Channel, Elic
pdb|3RQU|J Chain J, Crystal Structure Of A Prokaryotic Pentameric Ligand-Gated
Ion Channel, Elic
pdb|3RQW|A Chain A, Crystal Structure Of Acetylcholine Bound To A Prokaryotic
Pentameric Ligand-Gated Ion Channel, Elic
pdb|3RQW|B Chain B, Crystal Structure Of Acetylcholine Bound To A Prokaryotic
Pentameric Ligand-Gated Ion Channel, Elic
pdb|3RQW|C Chain C, Crystal Structure Of Acetylcholine Bound To A Prokaryotic
Pentameric Ligand-Gated Ion Channel, Elic
pdb|3RQW|D Chain D, Crystal Structure Of Acetylcholine Bound To A Prokaryotic
Pentameric Ligand-Gated Ion Channel, Elic
pdb|3RQW|E Chain E, Crystal Structure Of Acetylcholine Bound To A Prokaryotic
Pentameric Ligand-Gated Ion Channel, Elic
pdb|3RQW|F Chain F, Crystal Structure Of Acetylcholine Bound To A Prokaryotic
Pentameric Ligand-Gated Ion Channel, Elic
pdb|3RQW|G Chain G, Crystal Structure Of Acetylcholine Bound To A Prokaryotic
Pentameric Ligand-Gated Ion Channel, Elic
pdb|3RQW|H Chain H, Crystal Structure Of Acetylcholine Bound To A Prokaryotic
Pentameric Ligand-Gated Ion Channel, Elic
pdb|3RQW|I Chain I, Crystal Structure Of Acetylcholine Bound To A Prokaryotic
Pentameric Ligand-Gated Ion Channel, Elic
pdb|3RQW|J Chain J, Crystal Structure Of Acetylcholine Bound To A Prokaryotic
Pentameric Ligand-Gated Ion Channel, Elic
pdb|2YN6|A Chain A, Pentameric Ligand-Gated Ion Channel Elic In Complex With
Barium
pdb|2YN6|B Chain B, Pentameric Ligand-Gated Ion Channel Elic In Complex With
Barium
pdb|2YN6|C Chain C, Pentameric Ligand-Gated Ion Channel Elic In Complex With
Barium
pdb|2YN6|D Chain D, Pentameric Ligand-Gated Ion Channel Elic In Complex With
Barium
pdb|2YN6|E Chain E, Pentameric Ligand-Gated Ion Channel Elic In Complex With
Barium
Length = 322
Score = 38.5 bits (88), Expect = 0.001, Method: Composition-based stats.
Identities = 25/77 (32%), Positives = 38/77 (49%), Gaps = 4/77 (5%)
Query: 16 ENYLGEINLRDRVWTPHLYLVNEHDSRIMGSGRQDILISVQPDGTVLYSTRLKVTLLCLM 75
EN E + + +W P L +N S G+ R + + PDG V+Y+ R + M
Sbjct: 59 ENTQIERWINNGLWVPALEFINVVGSPDTGNKR----LMLFPDGRVIYNARFLGSFSNDM 114
Query: 76 NLKKFPFDEQECPLVLE 92
+ + FPFD Q+ L LE
Sbjct: 115 DFRLFPFDRQQFVLELE 131
>pdb|4A97|A Chain A, X-Ray Structure Of A Pentameric Ligand Gated Ion Channel
From Erwinia Chrysanthemi (Elic) In Complex With
Zopiclone
pdb|4A97|B Chain B, X-Ray Structure Of A Pentameric Ligand Gated Ion Channel
From Erwinia Chrysanthemi (Elic) In Complex With
Zopiclone
pdb|4A97|C Chain C, X-Ray Structure Of A Pentameric Ligand Gated Ion Channel
From Erwinia Chrysanthemi (Elic) In Complex With
Zopiclone
pdb|4A97|D Chain D, X-Ray Structure Of A Pentameric Ligand Gated Ion Channel
From Erwinia Chrysanthemi (Elic) In Complex With
Zopiclone
pdb|4A97|E Chain E, X-Ray Structure Of A Pentameric Ligand Gated Ion Channel
From Erwinia Chrysanthemi (Elic) In Complex With
Zopiclone
pdb|4A97|F Chain F, X-Ray Structure Of A Pentameric Ligand Gated Ion Channel
From Erwinia Chrysanthemi (Elic) In Complex With
Zopiclone
pdb|4A97|G Chain G, X-Ray Structure Of A Pentameric Ligand Gated Ion Channel
From Erwinia Chrysanthemi (Elic) In Complex With
Zopiclone
pdb|4A97|H Chain H, X-Ray Structure Of A Pentameric Ligand Gated Ion Channel
From Erwinia Chrysanthemi (Elic) In Complex With
Zopiclone
pdb|4A97|I Chain I, X-Ray Structure Of A Pentameric Ligand Gated Ion Channel
From Erwinia Chrysanthemi (Elic) In Complex With
Zopiclone
pdb|4A97|J Chain J, X-Ray Structure Of A Pentameric Ligand Gated Ion Channel
From Erwinia Chrysanthemi (Elic) In Complex With
Zopiclone
pdb|4A98|A Chain A, X-Ray Structure Of A Pentameric Ligand Gated Ion Channel
From Erwinia Chrysanthemi (Elic) In Complex With
Bromoflurazepam
pdb|4A98|B Chain B, X-Ray Structure Of A Pentameric Ligand Gated Ion Channel
From Erwinia Chrysanthemi (Elic) In Complex With
Bromoflurazepam
pdb|4A98|C Chain C, X-Ray Structure Of A Pentameric Ligand Gated Ion Channel
From Erwinia Chrysanthemi (Elic) In Complex With
Bromoflurazepam
pdb|4A98|D Chain D, X-Ray Structure Of A Pentameric Ligand Gated Ion Channel
From Erwinia Chrysanthemi (Elic) In Complex With
Bromoflurazepam
pdb|4A98|E Chain E, X-Ray Structure Of A Pentameric Ligand Gated Ion Channel
From Erwinia Chrysanthemi (Elic) In Complex With
Bromoflurazepam
pdb|4A98|F Chain F, X-Ray Structure Of A Pentameric Ligand Gated Ion Channel
From Erwinia Chrysanthemi (Elic) In Complex With
Bromoflurazepam
pdb|4A98|G Chain G, X-Ray Structure Of A Pentameric Ligand Gated Ion Channel
From Erwinia Chrysanthemi (Elic) In Complex With
Bromoflurazepam
pdb|4A98|H Chain H, X-Ray Structure Of A Pentameric Ligand Gated Ion Channel
From Erwinia Chrysanthemi (Elic) In Complex With
Bromoflurazepam
pdb|4A98|I Chain I, X-Ray Structure Of A Pentameric Ligand Gated Ion Channel
From Erwinia Chrysanthemi (Elic) In Complex With
Bromoflurazepam
pdb|4A98|J Chain J, X-Ray Structure Of A Pentameric Ligand Gated Ion Channel
From Erwinia Chrysanthemi (Elic) In Complex With
Bromoflurazepam
pdb|2YOE|A Chain A, X-Ray Structure Of A Pentameric Ligand Gated Ion Channel
From Erwinia Chrysanthemi (Elic) In Complex With Gaba
And Flurazepam
pdb|2YOE|B Chain B, X-Ray Structure Of A Pentameric Ligand Gated Ion Channel
From Erwinia Chrysanthemi (Elic) In Complex With Gaba
And Flurazepam
pdb|2YOE|C Chain C, X-Ray Structure Of A Pentameric Ligand Gated Ion Channel
From Erwinia Chrysanthemi (Elic) In Complex With Gaba
And Flurazepam
pdb|2YOE|D Chain D, X-Ray Structure Of A Pentameric Ligand Gated Ion Channel
From Erwinia Chrysanthemi (Elic) In Complex With Gaba
And Flurazepam
pdb|2YOE|E Chain E, X-Ray Structure Of A Pentameric Ligand Gated Ion Channel
From Erwinia Chrysanthemi (Elic) In Complex With Gaba
And Flurazepam
pdb|2YOE|F Chain F, X-Ray Structure Of A Pentameric Ligand Gated Ion Channel
From Erwinia Chrysanthemi (Elic) In Complex With Gaba
And Flurazepam
pdb|2YOE|G Chain G, X-Ray Structure Of A Pentameric Ligand Gated Ion Channel
From Erwinia Chrysanthemi (Elic) In Complex With Gaba
And Flurazepam
pdb|2YOE|H Chain H, X-Ray Structure Of A Pentameric Ligand Gated Ion Channel
From Erwinia Chrysanthemi (Elic) In Complex With Gaba
And Flurazepam
pdb|2YOE|I Chain I, X-Ray Structure Of A Pentameric Ligand Gated Ion Channel
From Erwinia Chrysanthemi (Elic) In Complex With Gaba
And Flurazepam
pdb|2YOE|J Chain J, X-Ray Structure Of A Pentameric Ligand Gated Ion Channel
From Erwinia Chrysanthemi (Elic) In Complex With Gaba
And Flurazepam
pdb|3ZKR|A Chain A, X-ray Structure Of A Pentameric Ligand Gated Ion Channel
From Erwinia Chrysanthemi (elic) In Complex With
Bromoform
pdb|3ZKR|B Chain B, X-ray Structure Of A Pentameric Ligand Gated Ion Channel
From Erwinia Chrysanthemi (elic) In Complex With
Bromoform
pdb|3ZKR|C Chain C, X-ray Structure Of A Pentameric Ligand Gated Ion Channel
From Erwinia Chrysanthemi (elic) In Complex With
Bromoform
pdb|3ZKR|D Chain D, X-ray Structure Of A Pentameric Ligand Gated Ion Channel
From Erwinia Chrysanthemi (elic) In Complex With
Bromoform
pdb|3ZKR|E Chain E, X-ray Structure Of A Pentameric Ligand Gated Ion Channel
From Erwinia Chrysanthemi (elic) In Complex With
Bromoform
pdb|3ZKR|F Chain F, X-ray Structure Of A Pentameric Ligand Gated Ion Channel
From Erwinia Chrysanthemi (elic) In Complex With
Bromoform
pdb|3ZKR|G Chain G, X-ray Structure Of A Pentameric Ligand Gated Ion Channel
From Erwinia Chrysanthemi (elic) In Complex With
Bromoform
pdb|3ZKR|H Chain H, X-ray Structure Of A Pentameric Ligand Gated Ion Channel
From Erwinia Chrysanthemi (elic) In Complex With
Bromoform
pdb|3ZKR|I Chain I, X-ray Structure Of A Pentameric Ligand Gated Ion Channel
From Erwinia Chrysanthemi (elic) In Complex With
Bromoform
pdb|3ZKR|J Chain J, X-ray Structure Of A Pentameric Ligand Gated Ion Channel
From Erwinia Chrysanthemi (elic) In Complex With
Bromoform
Length = 307
Score = 38.5 bits (88), Expect = 0.001, Method: Composition-based stats.
Identities = 25/77 (32%), Positives = 38/77 (49%), Gaps = 4/77 (5%)
Query: 16 ENYLGEINLRDRVWTPHLYLVNEHDSRIMGSGRQDILISVQPDGTVLYSTRLKVTLLCLM 75
EN E + + +W P L +N S G+ R + + PDG V+Y+ R + M
Sbjct: 49 ENTQIERWINNGLWVPALEFINVVGSPDTGNKR----LMLFPDGRVIYNARFLGSFSNDM 104
Query: 76 NLKKFPFDEQECPLVLE 92
+ + FPFD Q+ L LE
Sbjct: 105 DFRLFPFDRQQFVLELE 121
>pdb|2YKS|A Chain A, Pentameric Ligand Gated Ion Channel Elic Mutant F246a
pdb|2YKS|B Chain B, Pentameric Ligand Gated Ion Channel Elic Mutant F246a
pdb|2YKS|C Chain C, Pentameric Ligand Gated Ion Channel Elic Mutant F246a
pdb|2YKS|D Chain D, Pentameric Ligand Gated Ion Channel Elic Mutant F246a
pdb|2YKS|E Chain E, Pentameric Ligand Gated Ion Channel Elic Mutant F246a
pdb|2YKS|F Chain F, Pentameric Ligand Gated Ion Channel Elic Mutant F246a
pdb|2YKS|G Chain G, Pentameric Ligand Gated Ion Channel Elic Mutant F246a
pdb|2YKS|H Chain H, Pentameric Ligand Gated Ion Channel Elic Mutant F246a
pdb|2YKS|I Chain I, Pentameric Ligand Gated Ion Channel Elic Mutant F246a
pdb|2YKS|J Chain J, Pentameric Ligand Gated Ion Channel Elic Mutant F246a
Length = 321
Score = 38.5 bits (88), Expect = 0.001, Method: Composition-based stats.
Identities = 25/77 (32%), Positives = 38/77 (49%), Gaps = 4/77 (5%)
Query: 16 ENYLGEINLRDRVWTPHLYLVNEHDSRIMGSGRQDILISVQPDGTVLYSTRLKVTLLCLM 75
EN E + + +W P L +N S G+ R + + PDG V+Y+ R + M
Sbjct: 59 ENTQIERWINNGLWVPALEFINVVGSPDTGNKR----LMLFPDGRVIYNARFLGSFSNDM 114
Query: 76 NLKKFPFDEQECPLVLE 92
+ + FPFD Q+ L LE
Sbjct: 115 DFRLFPFDRQQFVLELE 131
>pdb|4AQ5|A Chain A, Gating Movement In Acetylcholine Receptor Analysed By
Time- Resolved Electron Cryo-Microscopy (Closed Class)
pdb|4AQ5|D Chain D, Gating Movement In Acetylcholine Receptor Analysed By
Time- Resolved Electron Cryo-Microscopy (Closed Class)
pdb|4AQ9|A Chain A, Gating Movement In Acetylcholine Receptor Analysed By
Time-Resolved Electron Cryo-Microscopy (Open Class)
pdb|4AQ9|D Chain D, Gating Movement In Acetylcholine Receptor Analysed By
Time-Resolved Electron Cryo-Microscopy (Open Class)
Length = 461
Score = 38.5 bits (88), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 27/94 (28%), Positives = 42/94 (44%), Gaps = 6/94 (6%)
Query: 1 MRYRWVDPRLAHNAKENYLGEINLR---DRVWTPHLYLVNEHDSRIMGSGRQDILISVQP 57
+R +W+D RL N + Y G +R D VW P L L N D +L+
Sbjct: 80 LRQQWIDVRLRWNPAD-YGGIKKIRLPSDDVWLPDLVLYNNADGDFAIVHMTKLLLDYT- 137
Query: 58 DGTVLYSTRLKVTLLCLMNLKKFPFDEQECPLVL 91
G ++++ C + + FPFD+Q C + L
Sbjct: 138 -GKIMWTPPAIFKSYCEIIVTHFPFDQQNCTMKL 170
>pdb|2VL0|A Chain A, X-Ray Structure Of A Pentameric Ligand Gated Ion Channel
From Erwinia Chrysanthemi (Elic)
pdb|2VL0|B Chain B, X-Ray Structure Of A Pentameric Ligand Gated Ion Channel
From Erwinia Chrysanthemi (Elic)
pdb|2VL0|C Chain C, X-Ray Structure Of A Pentameric Ligand Gated Ion Channel
From Erwinia Chrysanthemi (Elic)
pdb|2VL0|D Chain D, X-Ray Structure Of A Pentameric Ligand Gated Ion Channel
From Erwinia Chrysanthemi (Elic)
pdb|2VL0|E Chain E, X-Ray Structure Of A Pentameric Ligand Gated Ion Channel
From Erwinia Chrysanthemi (Elic)
pdb|2VL0|F Chain F, X-Ray Structure Of A Pentameric Ligand Gated Ion Channel
From Erwinia Chrysanthemi (Elic)
pdb|2VL0|G Chain G, X-Ray Structure Of A Pentameric Ligand Gated Ion Channel
From Erwinia Chrysanthemi (Elic)
pdb|2VL0|H Chain H, X-Ray Structure Of A Pentameric Ligand Gated Ion Channel
From Erwinia Chrysanthemi (Elic)
pdb|2VL0|I Chain I, X-Ray Structure Of A Pentameric Ligand Gated Ion Channel
From Erwinia Chrysanthemi (Elic)
pdb|2VL0|J Chain J, X-Ray Structure Of A Pentameric Ligand Gated Ion Channel
From Erwinia Chrysanthemi (Elic)
Length = 321
Score = 38.5 bits (88), Expect = 0.001, Method: Composition-based stats.
Identities = 25/77 (32%), Positives = 38/77 (49%), Gaps = 4/77 (5%)
Query: 16 ENYLGEINLRDRVWTPHLYLVNEHDSRIMGSGRQDILISVQPDGTVLYSTRLKVTLLCLM 75
EN E + + +W P L +N S G+ R + + PDG V+Y+ R + M
Sbjct: 59 ENTQIERWINNGLWVPALEFINVVGSPDTGNKR----LMLFPDGRVIYNARFLGSFSNDM 114
Query: 76 NLKKFPFDEQECPLVLE 92
+ + FPFD Q+ L LE
Sbjct: 115 DFRLFPFDRQQFVLELE 131
>pdb|2BG9|A Chain A, Refined Structure Of The Nicotinic Acetylcholine Receptor
At 4a Resolution.
pdb|2BG9|D Chain D, Refined Structure Of The Nicotinic Acetylcholine Receptor
At 4a Resolution
Length = 370
Score = 38.5 bits (88), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 27/94 (28%), Positives = 42/94 (44%), Gaps = 6/94 (6%)
Query: 1 MRYRWVDPRLAHNAKENYLGEINLR---DRVWTPHLYLVNEHDSRIMGSGRQDILISVQP 57
+R +W+D RL N + Y G +R D VW P L L N D +L+
Sbjct: 56 LRQQWIDVRLRWNPAD-YGGIKKIRLPSDDVWLPDLVLYNNADGDFAIVHMTKLLLDYT- 113
Query: 58 DGTVLYSTRLKVTLLCLMNLKKFPFDEQECPLVL 91
G ++++ C + + FPFD+Q C + L
Sbjct: 114 -GKIMWTPPAIFKSYCEIIVTHFPFDQQNCTMKL 146
>pdb|2BG9|B Chain B, Refined Structure Of The Nicotinic Acetylcholine Receptor
At 4a Resolution
Length = 370
Score = 37.0 bits (84), Expect = 0.003, Method: Composition-based stats.
Identities = 28/92 (30%), Positives = 41/92 (44%), Gaps = 6/92 (6%)
Query: 5 WVDPRLAHNAKENYLGEINLR---DRVWTPHLYLVNEHDSRIMGSGRQDILISVQPDGTV 61
W D RL + Y G +L D VW P + L+N +D + ++L VQ G V
Sbjct: 60 WTDYRLQWDPAA-YEGIKDLSIPSDDVWQPDIVLMNNNDGSFEITLHVNVL--VQHTGAV 116
Query: 62 LYSTRLKVTLLCLMNLKKFPFDEQECPLVLES 93
+ C + + FPFD Q C +V +S
Sbjct: 117 SWHPSAIYRSSCTIKVMYFPFDWQNCTMVFKS 148
>pdb|4AQ5|B Chain B, Gating Movement In Acetylcholine Receptor Analysed By
Time- Resolved Electron Cryo-Microscopy (Closed Class)
pdb|4AQ9|B Chain B, Gating Movement In Acetylcholine Receptor Analysed By
Time-Resolved Electron Cryo-Microscopy (Open Class)
Length = 493
Score = 37.0 bits (84), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 28/92 (30%), Positives = 41/92 (44%), Gaps = 6/92 (6%)
Query: 5 WVDPRLAHNAKENYLGEINLR---DRVWTPHLYLVNEHDSRIMGSGRQDILISVQPDGTV 61
W D RL + Y G +L D VW P + L+N +D + ++L VQ G V
Sbjct: 84 WTDYRLQWDPAA-YEGIKDLSIPSDDVWQPDIVLMNNNDGSFEITLHVNVL--VQHTGAV 140
Query: 62 LYSTRLKVTLLCLMNLKKFPFDEQECPLVLES 93
+ C + + FPFD Q C +V +S
Sbjct: 141 SWHPSAIYRSSCTIKVMYFPFDWQNCTMVFKS 172
>pdb|4AQ5|E Chain E, Gating Movement In Acetylcholine Receptor Analysed By
Time- Resolved Electron Cryo-Microscopy (Closed Class)
pdb|4AQ9|E Chain E, Gating Movement In Acetylcholine Receptor Analysed By
Time-Resolved Electron Cryo-Microscopy (Open Class)
Length = 488
Score = 34.3 bits (77), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 28/96 (29%), Positives = 44/96 (45%), Gaps = 6/96 (6%)
Query: 1 MRYRWVDPRLAHNAKENYLGEINLR---DRVWTPHLYLVNEHDSRIMGSGRQDILISVQP 57
+ +W D RL+ N E Y G +R + +W P + L N D + + ++L V
Sbjct: 55 IEIQWNDYRLSWNTSE-YEGIDLVRIPSELLWLPDVVLENNVDGQFEVAYYANVL--VYN 111
Query: 58 DGTVLYSTRLKVTLLCLMNLKKFPFDEQECPLVLES 93
DG++ + C + + FPFD Q C LV S
Sbjct: 112 DGSMYWLPPAIYRSTCPIAVTYFPFDWQNCSLVFRS 147
>pdb|2BG9|E Chain E, Refined Structure Of The Nicotinic Acetylcholine Receptor
At 4a Resolution
Length = 370
Score = 34.3 bits (77), Expect = 0.019, Method: Composition-based stats.
Identities = 28/93 (30%), Positives = 43/93 (46%), Gaps = 6/93 (6%)
Query: 4 RWVDPRLAHNAKENYLGEINLR---DRVWTPHLYLVNEHDSRIMGSGRQDILISVQPDGT 60
+W D RL+ N E Y G +R + +W P + L N D + + ++L V DG+
Sbjct: 58 QWNDYRLSWNTSE-YEGIDLVRIPSELLWLPDVVLENNVDGQFEVAYYANVL--VYNDGS 114
Query: 61 VLYSTRLKVTLLCLMNLKKFPFDEQECPLVLES 93
+ + C + + FPFD Q C LV S
Sbjct: 115 MYWLPPAIYRSTCPIAVTYFPFDWQNCSLVFRS 147
>pdb|2QC1|B Chain B, Crystal Structure Of The Extracellular Domain Of The
Nicotinic Acetylcholine Receptor 1 Subunit Bound To
Alpha-Bungarotoxin At 1.9 A Resolution
Length = 212
Score = 34.3 bits (77), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 23/94 (24%), Positives = 41/94 (43%), Gaps = 6/94 (6%)
Query: 1 MRYRWVDPRLAHNAKENYLGEINLR---DRVWTPHLYLVNEHDSRIMGSGRQDILISVQP 57
++ +WVD L N ++Y G + +++W P + L N D +L+
Sbjct: 57 LKQQWVDYNLKWNP-DDYGGVKKIHIPSEKIWRPDVVLYNNADGDFAIVKFTKVLLDYT- 114
Query: 58 DGTVLYSTRLKVTLLCLMNLKKFPFDEQECPLVL 91
G + ++ C + + FPFDEQ C + L
Sbjct: 115 -GHITWTPPAIFKSYCEIIVTHFPFDEQNCSMKL 147
>pdb|3IGQ|A Chain A, Crystal Structure Of The Extracellular Domain Of A
Bacterial Pentameric Ligand-Gated Ion Channel
pdb|3IGQ|B Chain B, Crystal Structure Of The Extracellular Domain Of A
Bacterial Pentameric Ligand-Gated Ion Channel
pdb|3IGQ|C Chain C, Crystal Structure Of The Extracellular Domain Of A
Bacterial Pentameric Ligand-Gated Ion Channel
pdb|3IGQ|D Chain D, Crystal Structure Of The Extracellular Domain Of A
Bacterial Pentameric Ligand-Gated Ion Channel
pdb|3IGQ|E Chain E, Crystal Structure Of The Extracellular Domain Of A
Bacterial Pentameric Ligand-Gated Ion Channel
pdb|3IGQ|F Chain F, Crystal Structure Of The Extracellular Domain Of A
Bacterial Pentameric Ligand-Gated Ion Channel
Length = 201
Score = 33.9 bits (76), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 24/83 (28%), Positives = 39/83 (46%), Gaps = 7/83 (8%)
Query: 5 WVDPRLAHN-AKENYLGEINLRDRVWTPHLYLVNEHDSRIMGSGRQDIL-ISVQPDGTVL 62
W D RLA + + + + +W P + VN ++R D++ ISV PDGTV
Sbjct: 47 WKDRRLAFDPVRSGVRVKTYEPEAIWIPEIRFVNVENAR-----DADVVDISVSPDGTVQ 101
Query: 63 YSTRLKVTLLCLMNLKKFPFDEQ 85
Y R +L ++ ++ D Q
Sbjct: 102 YLERFSARVLSPLDGRRTESDSQ 124
>pdb|4AOD|A Chain A, Biomphalaria Glabrata Acetylcholine-Binding Protein Type 1
(Bgachbp1)
pdb|4AOD|B Chain B, Biomphalaria Glabrata Acetylcholine-Binding Protein Type 1
(Bgachbp1)
pdb|4AOD|C Chain C, Biomphalaria Glabrata Acetylcholine-Binding Protein Type 1
(Bgachbp1)
pdb|4AOD|D Chain D, Biomphalaria Glabrata Acetylcholine-Binding Protein Type 1
(Bgachbp1)
pdb|4AOD|E Chain E, Biomphalaria Glabrata Acetylcholine-Binding Protein Type 1
(Bgachbp1)
Length = 205
Score = 31.6 bits (70), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 20/52 (38%), Positives = 29/52 (55%), Gaps = 4/52 (7%)
Query: 28 VWTPHLYLVNEHDSRIMGSGRQDILISVQPDGTVLYSTRLKVTLLC-LMNLK 78
+WTP +++ + + + S D L V DGTV Y +LKV L C L +LK
Sbjct: 84 IWTPDIFIFDSVGAPEIFS---DKLARVSQDGTVTYVPQLKVRLSCPLADLK 132
>pdb|3KOM|A Chain A, Crystal Structure Of Apo Transketolase From Francisella
Tularensis
pdb|3KOM|B Chain B, Crystal Structure Of Apo Transketolase From Francisella
Tularensis
Length = 663
Score = 26.6 bits (57), Expect = 3.4, Method: Composition-based stats.
Identities = 14/35 (40%), Positives = 18/35 (51%)
Query: 13 NAKENYLGEINLRDRVWTPHLYLVNEHDSRIMGSG 47
NA LGE L DR TP L +++ H +G G
Sbjct: 124 NAVGXALGEKLLSDRYNTPDLKVIDHHTYVFLGDG 158
>pdb|4HAO|A Chain A, Crystal Structure Of Inorganic PolyphosphateATP-Nad Kinase
From Yersinia Pestis Co92
pdb|4HAO|B Chain B, Crystal Structure Of Inorganic PolyphosphateATP-Nad Kinase
From Yersinia Pestis Co92
Length = 304
Score = 26.6 bits (57), Expect = 3.5, Method: Composition-based stats.
Identities = 20/59 (33%), Positives = 25/59 (42%), Gaps = 5/59 (8%)
Query: 40 DSRIMGSGRQDILISVQPDGTVLYSTR-----LKVTLLCLMNLKKFPFDEQECPLVLES 93
D R S R D LI P G+ YS L TL ++ + FP PLV+ S
Sbjct: 168 DDRFAFSQRSDGLIIATPTGSTAYSLSAGGPILTPTLDAIVLVPMFPHTLTARPLVISS 226
>pdb|1DZN|A Chain A, Asp170ser Mutant Of Vanillyl-Alcohol Oxidase
pdb|1DZN|B Chain B, Asp170ser Mutant Of Vanillyl-Alcohol Oxidase
Length = 560
Score = 25.4 bits (54), Expect = 9.2, Method: Compositional matrix adjust.
Identities = 10/24 (41%), Positives = 16/24 (66%)
Query: 6 VDPRLAHNAKENYLGEINLRDRVW 29
V+P + ++ NYL NLRD++W
Sbjct: 142 VEPGVTYHDLHNYLEANNLRDKLW 165
>pdb|1W1K|A Chain A, Structure Of The Octameric Flavoenzyme Vanillyl-Alcohol
Oxidase: Ile238thr Mutant
pdb|1W1K|B Chain B, Structure Of The Octameric Flavoenzyme Vanillyl-Alcohol
Oxidase: Ile238thr Mutant
Length = 560
Score = 25.4 bits (54), Expect = 9.4, Method: Compositional matrix adjust.
Identities = 10/24 (41%), Positives = 16/24 (66%)
Query: 6 VDPRLAHNAKENYLGEINLRDRVW 29
V+P + ++ NYL NLRD++W
Sbjct: 142 VEPGVTYHDLHNYLEANNLRDKLW 165
>pdb|1QLT|A Chain A, Structure Of The H422a Mutant Of The Flavoenzyme
Vanillyl-Alcohol Oxidase
pdb|1QLT|B Chain B, Structure Of The H422a Mutant Of The Flavoenzyme
Vanillyl-Alcohol Oxidase
pdb|1QLU|A Chain A, Structure Of The H422a Mutant Vanillyl-Alcohol Oxidase In
Complex With Isoeugenol
pdb|1QLU|B Chain B, Structure Of The H422a Mutant Vanillyl-Alcohol Oxidase In
Complex With Isoeugenol
Length = 560
Score = 25.4 bits (54), Expect = 9.4, Method: Compositional matrix adjust.
Identities = 10/24 (41%), Positives = 16/24 (66%)
Query: 6 VDPRLAHNAKENYLGEINLRDRVW 29
V+P + ++ NYL NLRD++W
Sbjct: 142 VEPGVTYHDLHNYLEANNLRDKLW 165
>pdb|1E0Y|A Chain A, Structure Of The D170sT457E DOUBLE MUTANT OF VANILLYL-
Alcohol Oxidase
pdb|1E0Y|B Chain B, Structure Of The D170sT457E DOUBLE MUTANT OF VANILLYL-
Alcohol Oxidase
Length = 560
Score = 25.0 bits (53), Expect = 9.5, Method: Compositional matrix adjust.
Identities = 10/24 (41%), Positives = 16/24 (66%)
Query: 6 VDPRLAHNAKENYLGEINLRDRVW 29
V+P + ++ NYL NLRD++W
Sbjct: 142 VEPGVTYHDLHNYLEANNLRDKLW 165
>pdb|2VAO|A Chain A, Structure Of The Octameric Flavoenzyme Vanillyl-Alcohol
Oxidase In Complex With Isoeugenol
pdb|2VAO|B Chain B, Structure Of The Octameric Flavoenzyme Vanillyl-Alcohol
Oxidase In Complex With Isoeugenol
pdb|1VAO|A Chain A, Structure Of The Octameric Flavoenzyme Vanillyl-alcohol
Oxidase
pdb|1VAO|B Chain B, Structure Of The Octameric Flavoenzyme Vanillyl-alcohol
Oxidase
pdb|1AHU|A Chain A, Structure Of The Octameric Flavoenzyme Vanillyl-Alcohol
Oxidase In Complex With P-Cresol
pdb|1AHU|B Chain B, Structure Of The Octameric Flavoenzyme Vanillyl-Alcohol
Oxidase In Complex With P-Cresol
pdb|1AHV|A Chain A, Structure Of The Octameric Flavoenzyme Vanillyl-Alcohol
Oxidase In Complex With 2-Nitro-P-Cresol
pdb|1AHV|B Chain B, Structure Of The Octameric Flavoenzyme Vanillyl-Alcohol
Oxidase In Complex With 2-Nitro-P-Cresol
pdb|1AHZ|A Chain A, Structure Of The Octameric Flavoenzyme Vanillyl-Alcohol
Oxidase In Complex With 4-(1-Heptenyl)phenol
pdb|1AHZ|B Chain B, Structure Of The Octameric Flavoenzyme Vanillyl-Alcohol
Oxidase In Complex With 4-(1-Heptenyl)phenol
Length = 560
Score = 25.0 bits (53), Expect = 9.5, Method: Compositional matrix adjust.
Identities = 10/24 (41%), Positives = 16/24 (66%)
Query: 6 VDPRLAHNAKENYLGEINLRDRVW 29
V+P + ++ NYL NLRD++W
Sbjct: 142 VEPGVTYHDLHNYLEANNLRDKLW 165
>pdb|1E8F|A Chain A, Structure Of The H61t Mutant Of The Flavoenzyme
Vanillyl-Alcohol Oxidase In The Apo Form
pdb|1E8F|B Chain B, Structure Of The H61t Mutant Of The Flavoenzyme
Vanillyl-Alcohol Oxidase In The Apo Form
pdb|1E8G|A Chain A, Structure Of The H61t Double Mutant Of Vanillyl-Alcohol
Oxidase In Complex With Fluoro-Cresol
pdb|1E8G|B Chain B, Structure Of The H61t Double Mutant Of Vanillyl-Alcohol
Oxidase In Complex With Fluoro-Cresol
pdb|1E8H|A Chain A, Structure Of The H61t Mutant Of The Flavoenzyme Vanillyl-
Alcohol Oxidase In The Apo Form Complexed By Adp
pdb|1E8H|B Chain B, Structure Of The H61t Mutant Of The Flavoenzyme Vanillyl-
Alcohol Oxidase In The Apo Form Complexed By Adp
Length = 560
Score = 25.0 bits (53), Expect = 9.5, Method: Compositional matrix adjust.
Identities = 10/24 (41%), Positives = 16/24 (66%)
Query: 6 VDPRLAHNAKENYLGEINLRDRVW 29
V+P + ++ NYL NLRD++W
Sbjct: 142 VEPGVTYHDLHNYLEANNLRDKLW 165
>pdb|1W1L|A Chain A, Structure Of The Octameric Flavoenzyme Vanillyl-Alcohol
Oxidase: Phe454tyr Mutant
pdb|1W1L|B Chain B, Structure Of The Octameric Flavoenzyme Vanillyl-Alcohol
Oxidase: Phe454tyr Mutant
Length = 560
Score = 25.0 bits (53), Expect = 9.5, Method: Compositional matrix adjust.
Identities = 10/24 (41%), Positives = 16/24 (66%)
Query: 6 VDPRLAHNAKENYLGEINLRDRVW 29
V+P + ++ NYL NLRD++W
Sbjct: 142 VEPGVTYHDLHNYLEANNLRDKLW 165
>pdb|1W1M|A Chain A, Structure Of The Octameric Flavoenzyme Vanillyl-alcohol
Oxidase: Glu502gly Mutant
pdb|1W1M|B Chain B, Structure Of The Octameric Flavoenzyme Vanillyl-alcohol
Oxidase: Glu502gly Mutant
Length = 560
Score = 25.0 bits (53), Expect = 9.5, Method: Compositional matrix adjust.
Identities = 10/24 (41%), Positives = 16/24 (66%)
Query: 6 VDPRLAHNAKENYLGEINLRDRVW 29
V+P + ++ NYL NLRD++W
Sbjct: 142 VEPGVTYHDLHNYLEANNLRDKLW 165
>pdb|1W1J|A Chain A, Structure Of The Octameric Flavoenzyme Vanillyl-Alcohol
Oxidase: The505ser Mutant
pdb|1W1J|B Chain B, Structure Of The Octameric Flavoenzyme Vanillyl-Alcohol
Oxidase: The505ser Mutant
Length = 560
Score = 25.0 bits (53), Expect = 9.6, Method: Compositional matrix adjust.
Identities = 10/24 (41%), Positives = 16/24 (66%)
Query: 6 VDPRLAHNAKENYLGEINLRDRVW 29
V+P + ++ NYL NLRD++W
Sbjct: 142 VEPGVTYHDLHNYLEANNLRDKLW 165
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.323 0.140 0.442
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 2,914,462
Number of Sequences: 62578
Number of extensions: 98834
Number of successful extensions: 146
Number of sequences better than 100.0: 44
Number of HSP's better than 100.0 without gapping: 38
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 106
Number of HSP's gapped (non-prelim): 44
length of query: 95
length of database: 14,973,337
effective HSP length: 62
effective length of query: 33
effective length of database: 11,093,501
effective search space: 366085533
effective search space used: 366085533
T: 11
A: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 45 (21.9 bits)