Query psy4842
Match_columns 95
No_of_seqs 157 out of 1047
Neff 9.5
Searched_HMMs 29240
Date Fri Aug 16 19:08:40 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy4842.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/4842hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2qc1_B Acetylcholine receptor 100.0 6.1E-34 2.1E-38 179.5 7.6 92 1-95 57-151 (212)
2 4aoe_A Acetylcholine-binding p 100.0 6.6E-33 2.3E-37 174.0 8.3 89 1-95 56-147 (205)
3 3sq6_A ACHBP, neuronal acetylc 100.0 5.4E-33 1.8E-37 174.4 7.6 88 1-95 54-146 (204)
4 3igq_A GLR4197 protein; plgic 100.0 6.8E-33 2.3E-37 173.6 6.6 91 1-95 43-134 (201)
5 4aod_A Acetylcholine-binding p 100.0 1.5E-32 5.2E-37 172.4 8.2 89 1-95 56-147 (205)
6 3rhw_A Avermectin-sensitive gl 100.0 2.4E-32 8.2E-37 182.4 7.6 94 1-95 55-152 (347)
7 2bg9_B Acetylcholine receptor 100.0 1.3E-31 4.6E-36 180.2 9.5 92 1-95 56-150 (370)
8 2bg9_C Acetylcholine receptor 100.0 1.1E-31 3.9E-36 180.5 8.3 92 1-95 58-152 (369)
9 2bg9_A Acetylcholine receptor 100.0 1.3E-31 4.3E-36 180.3 7.6 92 1-95 56-150 (370)
10 2bg9_E Acetylcholine receptor 100.0 1.2E-31 4.2E-36 180.4 7.5 92 1-95 55-149 (370)
11 3tlw_A GLR4197 protein, GLIC; 100.0 2.9E-31 9.9E-36 175.6 8.4 90 1-95 47-138 (321)
12 4aq5_A Acetylcholine receptor 100.0 2.9E-31 9.8E-36 182.7 7.0 92 1-95 80-174 (461)
13 4aq5_C Acetylcholine receptor 100.0 1E-30 3.5E-35 182.1 8.6 92 1-95 79-173 (522)
14 4aq5_B Acetylcholine receptor 100.0 1.6E-30 5.3E-35 180.2 8.1 92 1-95 80-174 (493)
15 4aq5_E Acetylcholine receptor 100.0 7E-31 2.4E-35 181.8 6.2 92 1-95 55-149 (488)
16 2bj0_A Acetylcholine-binding p 100.0 6.2E-30 2.1E-34 160.3 7.7 89 1-95 52-143 (203)
17 4afh_A ACHBP; acetylcholine-bi 100.0 6.4E-30 2.2E-34 162.8 6.4 87 1-95 65-154 (230)
18 3rqw_A ELIC pentameric ligand 100.0 4.3E-29 1.5E-33 165.3 8.7 91 1-95 39-134 (322)
19 2wn9_A Soluble acetylcholine r 100.0 5.4E-29 1.9E-33 158.4 5.7 87 1-95 65-157 (228)
20 1uw6_A Acetylcholine-binding p 99.9 6.2E-28 2.1E-32 151.9 7.2 87 1-95 55-145 (211)
21 3ol0_A De novo designed monome 28.9 36 0.0012 16.0 1.7 14 51-64 17-30 (48)
22 3jtz_A Integrase; four strande 26.8 75 0.0025 16.5 3.3 18 51-68 26-43 (88)
23 1i31_A Clathrin coat assembly 25.2 1.2E+02 0.0039 19.7 4.2 36 51-91 60-95 (314)
24 3ju0_A Phage integrase; four s 24.5 93 0.0032 16.9 3.3 18 51-68 26-43 (108)
25 1ux6_A Thrombospondin-1; extra 22.5 1.8E+02 0.0062 19.5 7.2 66 3-73 272-347 (350)
26 1wmv_A WWOX, WW domain contain 22.2 25 0.00087 16.7 0.5 13 3-15 36-48 (54)
27 1jmq_A YAP65, 65 kDa YES-assoc 22.1 19 0.00065 16.3 0.0 9 4-12 34-42 (46)
28 3l81_A AP-4 complex subunit MU 21.8 1.7E+02 0.0058 18.9 5.6 37 50-91 42-78 (301)
29 4en2_M AP-1 complex subunit MU 20.9 1.6E+02 0.0054 18.6 4.2 34 53-91 24-57 (266)
No 1
>2qc1_B Acetylcholine receptor subunit alpha; nicotinic acetylcholine receptor, glycosylated protein, beta sandwich, Cys-loop, buried hydrophilic residues; HET: NAG MAN; 1.94A {Mus musculus} PDB: 1l4w_B 1ljz_B
Probab=100.00 E-value=6.1e-34 Score=179.50 Aligned_cols=92 Identities=24% Similarity=0.499 Sum_probs=81.3
Q ss_pred CceEEeCCCcccCCCCccccccc---ccCceeecceEEeecccceeeccCcceeEEEEcCCCeEEEeecceEEEEecccC
Q psy4842 1 MRYRWVDPRLAHNAKENYLGEIN---LRDRVWTPHLYLVNEHDSRIMGSGRQDILISVQPDGTVLYSTRLKVTLLCLMNL 77 (95)
Q Consensus 1 l~~~W~D~rL~w~~~~~~~~~~~---~~~~iW~P~i~~~n~~~~~~~~~~~~~~~~~i~~~G~v~~~~~~~~~~~C~~d~ 77 (95)
++|.|.|+||+|+|+ +++++.. +.++||+||++++|++++.++.... ..++|++||+|.+.+++++++.|+||+
T Consensus 57 ~~~~W~D~rL~w~~~-~~~~i~~l~~~~~~iW~PDi~~~N~~~~~~~~~~~--~~~~v~~~G~V~~~~~~~~~~~C~mdl 133 (212)
T 2qc1_B 57 LKQQWVDYNLKWNPD-DYGGVKKIHIPSEKIWRPDVVLYNNADGDFAIVKF--TKVLLDYTGHITWTPPAIFKSYCEIIV 133 (212)
T ss_dssp EEEEEECTTCCCCGG-GGTTCCEEEECGGGSCCCCEEECCBTTTSSCEECC--CCEEEETTCEEEECCEEEEEEEEEECC
T ss_pred EeeEEECCCcccChh-hcCCeeEEEcchhhccCCceeccccccccccccce--eeEEEECCeeEEEEeeeEEEEEcccee
Confidence 468999999999996 7776544 4799999999999999887665433 458899999999999999999999999
Q ss_pred cccCCCCceeeeEEeecC
Q psy4842 78 KKFPFDEQECPLVLESCK 95 (95)
Q Consensus 78 ~~fPfD~q~C~l~~~S~~ 95 (95)
++||||+|+|+|+||||+
T Consensus 134 ~~FPfD~Q~C~l~f~S~~ 151 (212)
T 2qc1_B 134 THFPFDEQNCSMKLGTRT 151 (212)
T ss_dssp SSSSCCEEEEEEEEEESS
T ss_pred ecCCCCceEEeEEEEccc
Confidence 999999999999999996
No 2
>4aoe_A Acetylcholine-binding protein type 2; ligand gated ION channel, LGI Cys-loop receptor, ACHBP, ACHR, acetylcholin receptor; 5.80A {Biomphalaria glabrata}
Probab=99.98 E-value=6.6e-33 Score=173.99 Aligned_cols=89 Identities=19% Similarity=0.357 Sum_probs=76.7
Q ss_pred CceEEeCCCcccCCCCccccc---ccccCceeecceEEeecccceeeccCcceeEEEEcCCCeEEEeecceEEEEecccC
Q psy4842 1 MRYRWVDPRLAHNAKENYLGE---INLRDRVWTPHLYLVNEHDSRIMGSGRQDILISVQPDGTVLYSTRLKVTLLCLMNL 77 (95)
Q Consensus 1 l~~~W~D~rL~w~~~~~~~~~---~~~~~~iW~P~i~~~n~~~~~~~~~~~~~~~~~i~~~G~v~~~~~~~~~~~C~~d~ 77 (95)
++|+|+|+||+|+++ ++++ ..+.++||+||++++|+++.... ..+..++|++||+|.|.++++++++|+||
T Consensus 56 l~~~W~D~rL~W~~~--~~~i~~i~v~~~~IW~PDi~l~N~~~~~~~---~~~~~v~v~~~G~V~~~~~~~~~s~C~~d- 129 (205)
T 4aoe_A 56 LVISWKDRSLSWSNE--CTTFNELTLPSKYIWLPHIEVYNSIGKPGI---HSDQLVRVYKDGTVTFVPQYTIRFSCALE- 129 (205)
T ss_dssp EEEEEECCCCCCSCC--CSCCCEEEEEGGGSCCCCCEETTBSSCCEE---CSCCEEEEETTSEEEECCEEEEEEECCCT-
T ss_pred EEEEEECCccccCCc--CCCccEEEeCHHHhccccEEEecccccccc---ccceEEEEeCCcEEEEeCcEEEEEecccC-
Confidence 478999999999974 5554 44579999999999999876432 23456889999999999999999999999
Q ss_pred cccCCCCceeeeEEeecC
Q psy4842 78 KKFPFDEQECPLVLESCK 95 (95)
Q Consensus 78 ~~fPfD~q~C~l~~~S~~ 95 (95)
..||||+|+|.|+||||+
T Consensus 130 ~~fPfD~Q~C~l~fgSw~ 147 (205)
T 4aoe_A 130 NVTTEQGAACTLKFGPWT 147 (205)
T ss_dssp TSSSSSCEEEEEEEECSS
T ss_pred cCCCccCCeEEEEEECcc
Confidence 899999999999999996
No 3
>3sq6_A ACHBP, neuronal acetylcholine receptor subunit alpha-7, acetylcholine-binding protein; nicotinic receptor; HET: EPJ NAG; 2.80A {Homo sapiens} SCOP: b.96.1.1 PDB: 3sq9_A*
Probab=99.98 E-value=5.4e-33 Score=174.36 Aligned_cols=88 Identities=22% Similarity=0.346 Sum_probs=77.8
Q ss_pred CceEEeCCCcccCCCCccccccc---ccCceeecceEEeeccc--ceeeccCcceeEEEEcCCCeEEEeecceEEEEecc
Q psy4842 1 MRYRWVDPRLAHNAKENYLGEIN---LRDRVWTPHLYLVNEHD--SRIMGSGRQDILISVQPDGTVLYSTRLKVTLLCLM 75 (95)
Q Consensus 1 l~~~W~D~rL~w~~~~~~~~~~~---~~~~iW~P~i~~~n~~~--~~~~~~~~~~~~~~i~~~G~v~~~~~~~~~~~C~~ 75 (95)
++|.|+|+||+|+|+ +++++.. +.++||+||++++|+++ +.++.. .++|++||+|.+.+++++++.|+|
T Consensus 54 ~~~~W~D~rL~w~~~-~~~~i~~i~~~~~~iW~PDi~~~N~~~~~~~~~~~-----~v~v~~~G~V~~~~~~~~~~~C~m 127 (204)
T 3sq6_A 54 LQMSWTDHYLQWNVS-EYPGVKQVSVPISSLWVPDLAAYNAISKPEVLTPQ-----LALVNSSGHVQYLPSIRQRFSCDV 127 (204)
T ss_dssp EEEEEECGGGCCCTT-TSSSCCEEEEEGGGSCCCCEEETTBSSCCEECSCC-----EEEEETTSEEEECCEEEEEEECCC
T ss_pred eeeEEECCCcccChH-HcCCccEEEcCHHHCcCCCEEeEcccccCCccccc-----EEEEEeCCEEEEecCeeEEEeccc
Confidence 468999999999997 7776554 47999999999999998 554321 688999999999999999999999
Q ss_pred cCcccCCCCceeeeEEeecC
Q psy4842 76 NLKKFPFDEQECPLVLESCK 95 (95)
Q Consensus 76 d~~~fPfD~q~C~l~~~S~~ 95 (95)
++ +||||+|+|+|+||||+
T Consensus 128 dl-~fPfD~Q~C~l~f~S~~ 146 (204)
T 3sq6_A 128 SG-VDTESGATCKLKFGSWT 146 (204)
T ss_dssp GG-GSSSSCEEEEEEEEESS
T ss_pred cc-cCCCCCcEEEEEEEeec
Confidence 99 99999999999999996
No 4
>3igq_A GLR4197 protein; plgic Cys-loop, membrane protein, transport protein; 2.30A {Gloeobacter violaceus}
Probab=99.98 E-value=6.8e-33 Score=173.58 Aligned_cols=91 Identities=26% Similarity=0.406 Sum_probs=72.6
Q ss_pred CceEEeCCCcccCCC-CcccccccccCceeecceEEeecccceeeccCcceeEEEEcCCCeEEEeecceEEEEecccCcc
Q psy4842 1 MRYRWVDPRLAHNAK-ENYLGEINLRDRVWTPHLYLVNEHDSRIMGSGRQDILISVQPDGTVLYSTRLKVTLLCLMNLKK 79 (95)
Q Consensus 1 l~~~W~D~rL~w~~~-~~~~~~~~~~~~iW~P~i~~~n~~~~~~~~~~~~~~~~~i~~~G~v~~~~~~~~~~~C~~d~~~ 79 (95)
++|.|.|+||+|+++ ..+..+..+.++||+||++++|+++... ..+..++|++||+|.+.+++++++.|+||+++
T Consensus 43 l~~~W~D~rL~w~~~~~~i~~~~~~~~~IW~PDi~l~N~~~~~~----~~~~~v~v~~~G~V~~~~~~~~~s~C~mdl~~ 118 (201)
T 3igq_A 43 LSLSWKDRRLAFDPVRSGVRVKTYEPEAIWIPEIRFVNVENARD----ADVVDISVSPDGTVQYLERFSARVLSPLDGRR 118 (201)
T ss_dssp EEEEEECGGGCCCHHHHTCSCEECCGGGSCCCCEEESSBSSSCE----EEEEEEEECTTCEEEEEEEEEEEEECCCC---
T ss_pred EeeEEECCccCCCCcCCCEeEecccccCcCccCEEEEccccccc----ccceEEEEeCCCcEEEecceeEEEecCccccc
Confidence 468999999999997 2233344558999999999999977642 34567899999999999999999999999999
Q ss_pred cCCCCceeeeEEeecC
Q psy4842 80 FPFDEQECPLVLESCK 95 (95)
Q Consensus 80 fPfD~q~C~l~~~S~~ 95 (95)
||||+|+|+|+||||+
T Consensus 119 FPfD~Q~C~l~f~S~~ 134 (201)
T 3igq_A 119 TESDSQTLHIYLIVRS 134 (201)
T ss_dssp ---CEEEEEEEEEECC
T ss_pred CCCCccEeeEEEeccC
Confidence 9999999999999996
No 5
>4aod_A Acetylcholine-binding protein type 1; ligand gated ION channel, LGI Cys-loop receptor, ACHBP, ACHR, acetylcholine receptor; 6.00A {Biomphalaria glabrata}
Probab=99.98 E-value=1.5e-32 Score=172.38 Aligned_cols=89 Identities=26% Similarity=0.366 Sum_probs=76.9
Q ss_pred CceEEeCCCcccCCCCcccccc---cccCceeecceEEeecccceeeccCcceeEEEEcCCCeEEEeecceEEEEecccC
Q psy4842 1 MRYRWVDPRLAHNAKENYLGEI---NLRDRVWTPHLYLVNEHDSRIMGSGRQDILISVQPDGTVLYSTRLKVTLLCLMNL 77 (95)
Q Consensus 1 l~~~W~D~rL~w~~~~~~~~~~---~~~~~iW~P~i~~~n~~~~~~~~~~~~~~~~~i~~~G~v~~~~~~~~~~~C~~d~ 77 (95)
++|.|+|+||+|+++ ++++. .+.++||+||++++|+++... ...+..+.|++||+|.|.++++++++|+|++
T Consensus 56 l~~~W~D~rL~W~~~--~~~i~~i~v~~~~IW~PDi~l~N~~~~~~---~~~~~~~~v~~~G~V~~~~~~~~~s~C~~d~ 130 (205)
T 4aod_A 56 TTLVWKDRCLNWFNE--FTSFKELTVPIAEIWTPDIFIFDSVGAPE---IFSDKLARVSQDGTVTYVPQLKVRLSCPLAD 130 (205)
T ss_dssp EEEEEECCCCCCSCC--CSCCCEEEEEGGGSCCCCEEETTBSSCCE---ECSCCEEEEETTSEEEECCEEEEEEECCCTT
T ss_pred EEEEEECCceeeCCc--CCCccEeeccHHhcCcCCEEEEcccccce---eecceEEEEecCCEEEEeccEEEEEEecCcc
Confidence 478999999999974 55554 457999999999999987643 2334568899999999999999999999999
Q ss_pred cccCCCCceeeeEEeecC
Q psy4842 78 KKFPFDEQECPLVLESCK 95 (95)
Q Consensus 78 ~~fPfD~q~C~l~~~S~~ 95 (95)
.+|||| |+|.|+||||+
T Consensus 131 ~~fPfD-Q~C~l~fgSw~ 147 (205)
T 4aod_A 131 LKLETG-VTCSLKSGSWT 147 (205)
T ss_dssp SSSSSC-EEEEEEEEESS
T ss_pred ccCCCC-cEEEEEEECcc
Confidence 999999 99999999996
No 6
>3rhw_A Avermectin-sensitive glutamate-gated chloride CHA alpha; membrane protein, transport protein, Cys-loop receptor, LIGA ION channel, neurotransmitter receptor; HET: NAG IVM LMT UND; 3.26A {Caenorhabditis elegans} PDB: 3ri5_A* 3ria_A* 3rif_A*
Probab=99.97 E-value=2.4e-32 Score=182.44 Aligned_cols=94 Identities=32% Similarity=0.607 Sum_probs=84.6
Q ss_pred CceEEeCCCcccCCCCccccccc----ccCceeecceEEeecccceeeccCcceeEEEEcCCCeEEEeecceEEEEeccc
Q psy4842 1 MRYRWVDPRLAHNAKENYLGEIN----LRDRVWTPHLYLVNEHDSRIMGSGRQDILISVQPDGTVLYSTRLKVTLLCLMN 76 (95)
Q Consensus 1 l~~~W~D~rL~w~~~~~~~~~~~----~~~~iW~P~i~~~n~~~~~~~~~~~~~~~~~i~~~G~v~~~~~~~~~~~C~~d 76 (95)
++|+|+|+||+|||+ +++++.. +.++||+||++++|++++.++.....+..++|++||+|.|.++++.++.|+||
T Consensus 55 l~~~W~D~rL~w~p~-~~~~~~~l~~~~~~~IW~PDi~l~N~~~~~~~~~~~~n~~v~i~~~G~V~~~~~~~~~s~C~~d 133 (347)
T 3rhw_A 55 LRESWIDKRLSYGVK-GDGQPDFVILTVGHQIWMPDTFFPNEKQAYKHTIDKPNVLIRIHNDGTVLYSVRISLVLSCPMY 133 (347)
T ss_dssp EEEEEECGGGCSSTT-CSSSCSEEECCTTCCCCCCCEECTTEEEEEECCSSSCSEEEEEETTSEEEEEEEEEEEEECCCC
T ss_pred EeeEEECcccCCCCc-cCCCceEEEecchhceecCCEeeeccccccccccccccEEEEEeCCCCEEEecceEEEEEeeee
Confidence 478999999999997 6655442 46999999999999999888877777888899999999999999999999999
Q ss_pred CcccCCCCceeeeEEeecC
Q psy4842 77 LKKFPFDEQECPLVLESCK 95 (95)
Q Consensus 77 ~~~fPfD~q~C~l~~~S~~ 95 (95)
+++||||+|+|+|+||||+
T Consensus 134 l~~FPfD~Q~C~l~f~S~~ 152 (347)
T 3rhw_A 134 LQYYPMDVQQCSIDLASYA 152 (347)
T ss_dssp CTTGGGCEEEEEEEEEESS
T ss_pred eccCCCcceeEEEEeccCc
Confidence 9999999999999999985
No 7
>2bg9_B Acetylcholine receptor protein, beta chain; ION channel/receptor, ION channel, electron microscopy, ION transport, postsynaptic membrane; 4.00A {Torpedo marmorata}
Probab=99.97 E-value=1.3e-31 Score=180.20 Aligned_cols=92 Identities=28% Similarity=0.526 Sum_probs=81.7
Q ss_pred CceEEeCCCcccCCCCccccccc---ccCceeecceEEeecccceeeccCcceeEEEEcCCCeEEEeecceEEEEecccC
Q psy4842 1 MRYRWVDPRLAHNAKENYLGEIN---LRDRVWTPHLYLVNEHDSRIMGSGRQDILISVQPDGTVLYSTRLKVTLLCLMNL 77 (95)
Q Consensus 1 l~~~W~D~rL~w~~~~~~~~~~~---~~~~iW~P~i~~~n~~~~~~~~~~~~~~~~~i~~~G~v~~~~~~~~~~~C~~d~ 77 (95)
++|+|+|+||+|+|+ +++++.. +.++||+||++++|++++.++.....+ +.|++||+|.+.+++++++.|+||+
T Consensus 56 l~~~W~D~rL~w~~~-~~~~i~~l~v~~~~IW~PDi~~~N~~~~~~~~~~~~~--~~v~~~G~V~~~~~~~~~~~C~mdl 132 (370)
T 2bg9_B 56 LNLAWTDYRLQWDPA-AYEGIKDLSIPSDDVWQPDIVLMNNNDGSFEITLHVN--VLVQHTGAVSWHPSAIYRSSCTIKV 132 (370)
T ss_dssp CEEEEECTTSCCCTT-TTSSCSEEEEESSSSCCCCEEESSCCCSCEESSSSCE--EEEETTSEEEECCEEEEEECCCCTT
T ss_pred EeeeeECcccCcCcc-ccCCeeEEEechhhccCCCccccccccccccccccce--EEEeCCceEEEEecceEEEEccCcc
Confidence 578999999999997 7776544 479999999999999998777654444 6799999999999999999999999
Q ss_pred cccCCCCceeeeEEeecC
Q psy4842 78 KKFPFDEQECPLVLESCK 95 (95)
Q Consensus 78 ~~fPfD~q~C~l~~~S~~ 95 (95)
++||||+|+|+++||||+
T Consensus 133 ~~FPfD~Q~C~l~f~S~~ 150 (370)
T 2bg9_B 133 MYFPFDWQNCTMVFKSYT 150 (370)
T ss_dssp CSSSTTCCCCEEEEEESS
T ss_pred cCCCCCceeeeEEEEecc
Confidence 999999999999999985
No 8
>2bg9_C Acetylcholine receptor protein, delta chain; ION channel/receptor, ION channel, electron microscopy, ION transport, postsynaptic membrane; 4.00A {Torpedo marmorata}
Probab=99.97 E-value=1.1e-31 Score=180.47 Aligned_cols=92 Identities=28% Similarity=0.471 Sum_probs=81.4
Q ss_pred CceEEeCCCcccCCCCccccccc---ccCceeecceEEeecccceeeccCcceeEEEEcCCCeEEEeecceEEEEecccC
Q psy4842 1 MRYRWVDPRLAHNAKENYLGEIN---LRDRVWTPHLYLVNEHDSRIMGSGRQDILISVQPDGTVLYSTRLKVTLLCLMNL 77 (95)
Q Consensus 1 l~~~W~D~rL~w~~~~~~~~~~~---~~~~iW~P~i~~~n~~~~~~~~~~~~~~~~~i~~~G~v~~~~~~~~~~~C~~d~ 77 (95)
++|+|+|+||+|||+ +++++.. +.++||+||++++|++++.++.....+ +.|++||+|.+.+++++++.|+||+
T Consensus 58 l~~~W~D~rL~w~~~-~~~~i~~l~v~~~~IW~PDi~~~N~~~~~~~~~~~~~--~~i~~~G~V~~~~~~~~~~~C~mdl 134 (369)
T 2bg9_C 58 MDHAWYDHRLTWNAS-EYSDISILRLRPELIWIPDIVLQNNNDGQYNVAYFCN--VLVRPNGYVTWLPPAIFRSSCPINV 134 (369)
T ss_dssp EEEEEECTTTCCCCC-CCCTCSCEEECGGGSCCCCEEETTTCSSCCBSSSSCC--EEECSSSEEEECCEEEEEECCSCGG
T ss_pred EeeeeECCCcccCcc-ccCCeeEEEecHHhccCCcEecccccccccccccccc--EEEECCccEEEecCEEEEEECcCcc
Confidence 468999999999997 7776554 479999999999999998776554444 6799999999999999999999999
Q ss_pred cccCCCCceeeeEEeecC
Q psy4842 78 KKFPFDEQECPLVLESCK 95 (95)
Q Consensus 78 ~~fPfD~q~C~l~~~S~~ 95 (95)
++||||+|+|+++||||+
T Consensus 135 ~~FPfD~Q~C~l~f~S~~ 152 (369)
T 2bg9_C 135 LYFPFDWQNCSLKFTALN 152 (369)
T ss_dssp GSSSTTCCEEEEEEEESS
T ss_pred cCCCCCceEeeEEEEEec
Confidence 999999999999999995
No 9
>2bg9_A Acetylcholine receptor protein, alpha chain; ION channel/receptor, ION channel, electron microscopy, ION transport, postsynaptic membrane; 4.00A {Torpedo marmorata}
Probab=99.97 E-value=1.3e-31 Score=180.29 Aligned_cols=92 Identities=27% Similarity=0.520 Sum_probs=81.6
Q ss_pred CceEEeCCCcccCCCCccccccc---ccCceeecceEEeecccceeeccCcceeEEEEcCCCeEEEeecceEEEEecccC
Q psy4842 1 MRYRWVDPRLAHNAKENYLGEIN---LRDRVWTPHLYLVNEHDSRIMGSGRQDILISVQPDGTVLYSTRLKVTLLCLMNL 77 (95)
Q Consensus 1 l~~~W~D~rL~w~~~~~~~~~~~---~~~~iW~P~i~~~n~~~~~~~~~~~~~~~~~i~~~G~v~~~~~~~~~~~C~~d~ 77 (95)
++|+|+|+||+|+|+ +++++.. +.++||+||++++|++++.++... +..++|++||+|.+.+++++++.|+||+
T Consensus 56 l~~~W~D~rL~w~p~-~~~~i~~l~v~~~~IW~PDi~~~N~~~~~~~~~~--~~~~~i~~~G~V~~~~~~~~~~~C~mdl 132 (370)
T 2bg9_A 56 LRQQWIDVRLRWNPA-DYGGIKKIRLPSDDVWLPDLVLYNNADGDFAIVH--MTKLLLDYTGKIMWTPPAIFKSYCEIIV 132 (370)
T ss_dssp EEEEECCTTSCCCTT-THHHHSSEEEEGGGSCCCCEEETTCCCSCEESCS--SCEEEECSSCCEEECCEEEEEEECCCCT
T ss_pred EeeeeECCCccCChh-hcCCccEEEechhhccCCcEeccccccccccccc--cceEEEECCeeEEEecceEEEEECCCCc
Confidence 468999999999996 7766543 479999999999999988776543 3458899999999999999999999999
Q ss_pred cccCCCCceeeeEEeecC
Q psy4842 78 KKFPFDEQECPLVLESCK 95 (95)
Q Consensus 78 ~~fPfD~q~C~l~~~S~~ 95 (95)
++||||+|+|+++||||+
T Consensus 133 ~~FPfD~Q~C~l~f~S~~ 150 (370)
T 2bg9_A 133 THFPFDQQNCTMKLGIWT 150 (370)
T ss_dssp TSSSSSCEEEEEEEEESS
T ss_pred CCCCCCcceeeEEEEEec
Confidence 999999999999999995
No 10
>2bg9_E Acetylcholine receptor protein, gamma chain; ION channel/receptor, ION channel, electron microscopy, ION transport, postsynaptic membrane; 4.00A {Torpedo marmorata}
Probab=99.97 E-value=1.2e-31 Score=180.38 Aligned_cols=92 Identities=27% Similarity=0.463 Sum_probs=81.1
Q ss_pred CceEEeCCCcccCCCCccccccc---ccCceeecceEEeecccceeeccCcceeEEEEcCCCeEEEeecceEEEEecccC
Q psy4842 1 MRYRWVDPRLAHNAKENYLGEIN---LRDRVWTPHLYLVNEHDSRIMGSGRQDILISVQPDGTVLYSTRLKVTLLCLMNL 77 (95)
Q Consensus 1 l~~~W~D~rL~w~~~~~~~~~~~---~~~~iW~P~i~~~n~~~~~~~~~~~~~~~~~i~~~G~v~~~~~~~~~~~C~~d~ 77 (95)
++|+|+|+||+|+|+ +++++.. +.++||+||++++|++++.++.....+ +.|++||+|.+.+++++++.|+||+
T Consensus 55 l~~~W~D~rL~w~~~-~~~~i~~l~v~~~~IW~PDi~~~N~~~~~~~~~~~~~--~~v~~~G~V~~~~~~~~~~~C~mdl 131 (370)
T 2bg9_E 55 IEIQWNDYRLSWNTS-EYEGIDLVRIPSELLWLPDVVLENNVDGQFEVAYYAN--VLVYNDGSMYWLPPAIYRSTCPIAV 131 (370)
T ss_dssp EEEEEECGGGCCCTT-TTTTCSCBCCCGGGSCCCCEEESSSCCSCCBSSSSCC--CEECSSSEEEECCEEEEEECCCCSS
T ss_pred EeeEEECCCcCCChh-hcCCeeEEeechhccCCCCEeeccccCCccccccccc--EEEECCccEEEecCEEEEEECcccc
Confidence 468999999999997 7766543 479999999999999998776555444 4689999999999999999999999
Q ss_pred cccCCCCceeeeEEeecC
Q psy4842 78 KKFPFDEQECPLVLESCK 95 (95)
Q Consensus 78 ~~fPfD~q~C~l~~~S~~ 95 (95)
++||||+|+|+++||||+
T Consensus 132 ~~FPfD~Q~C~l~f~S~~ 149 (370)
T 2bg9_E 132 TYFPFDWQNCSLVFRSQT 149 (370)
T ss_dssp CSSSSSCCBCCEEEEESS
T ss_pred cCCCCCeEEEEEEEEeec
Confidence 999999999999999985
No 11
>3tlw_A GLR4197 protein, GLIC; Cys-loop receptor family, membrane protein, transport protei; HET: LMT; 2.60A {Gloeobacter violaceus} PDB: 3uu4_A* 3uub_A* 3tlv_A* 3uu6_A* 3uu5_A* 3uu3_A* 3tlu_A* 3uu8_A* 3tls_A* 3tlt_A* 3p4w_A* 3p50_A* 3eam_A* 4f8h_A* 2xq4_A 2xq5_A 2xq6_A 2xq3_A 2xq8_A 2xqa_A ...
Probab=99.97 E-value=2.9e-31 Score=175.64 Aligned_cols=90 Identities=29% Similarity=0.529 Sum_probs=79.5
Q ss_pred CceEEeCCCcccCCCCccc--ccccccCceeecceEEeecccceeeccCcceeEEEEcCCCeEEEeecceEEEEecccCc
Q psy4842 1 MRYRWVDPRLAHNAKENYL--GEINLRDRVWTPHLYLVNEHDSRIMGSGRQDILISVQPDGTVLYSTRLKVTLLCLMNLK 78 (95)
Q Consensus 1 l~~~W~D~rL~w~~~~~~~--~~~~~~~~iW~P~i~~~n~~~~~~~~~~~~~~~~~i~~~G~v~~~~~~~~~~~C~~d~~ 78 (95)
++|+|+|+||+|||+ +++ .+..+.++||+||++++|++++. ...+..++|++||+|.+..+++.++.|+||++
T Consensus 47 l~~~W~D~rL~w~~~-~~~i~~~~~~~~~IW~PDi~l~N~~~~~----~~~~~~~~v~~~G~V~~~~~~~~~~~C~~dl~ 121 (321)
T 3tlw_A 47 LSLSWKDRRLAFDPV-RSGVRVKTYEPEAIWIPEIRFVNVENAR----DADVVDISVSPDGTVQYLERFSARVLSPLDFR 121 (321)
T ss_dssp EEEEEECGGGCCCST-TTCCSSEECCGGGSCCCCEEESSBSSCC----EEEEEEEEECTTCEEEEEEEEEEEEECCCCCT
T ss_pred EeeEEECcccCCCCc-cCCeeeecccccCeEcCcEEeecccccc----cccceeEEEeCCccEEEecceEEEEEEEeecc
Confidence 478999999999997 554 33445899999999999998876 34566789999999999999999999999999
Q ss_pred ccCCCCceeeeEEeecC
Q psy4842 79 KFPFDEQECPLVLESCK 95 (95)
Q Consensus 79 ~fPfD~q~C~l~~~S~~ 95 (95)
+||||+|+|+++|+||+
T Consensus 122 ~FPfD~Q~C~l~f~S~~ 138 (321)
T 3tlw_A 122 RYPFDSQTLHIYLIVRS 138 (321)
T ss_dssp TTTSCEEEEEEEEEEEC
T ss_pred cCCCCceeEeEEEeccc
Confidence 99999999999999985
No 12
>4aq5_A Acetylcholine receptor subunit alpha; membrane protein, freeze-trapping, asymmetric gating, allost mechanism; 6.20A {Torpedo marmorata} PDB: 4aq9_A
Probab=99.97 E-value=2.9e-31 Score=182.67 Aligned_cols=92 Identities=27% Similarity=0.527 Sum_probs=81.3
Q ss_pred CceEEeCCCcccCCCCccccccc---ccCceeecceEEeecccceeeccCcceeEEEEcCCCeEEEeecceEEEEecccC
Q psy4842 1 MRYRWVDPRLAHNAKENYLGEIN---LRDRVWTPHLYLVNEHDSRIMGSGRQDILISVQPDGTVLYSTRLKVTLLCLMNL 77 (95)
Q Consensus 1 l~~~W~D~rL~w~~~~~~~~~~~---~~~~iW~P~i~~~n~~~~~~~~~~~~~~~~~i~~~G~v~~~~~~~~~~~C~~d~ 77 (95)
++|+|+|+||+|||+ +++++.. +.++||+||++++|++++.++..... .++|++||+|.|.+++++++.|+||+
T Consensus 80 l~~~W~D~rL~Wnp~-~y~gi~~l~vp~~~IW~PDi~l~N~~d~~~~~~~~~--~v~v~~dG~V~~~~~~~~~s~C~mdl 156 (461)
T 4aq5_A 80 LRQQWIDVRLRWNPA-DYGGIKKIRLPSDDVWLPDLVLYNNADGDFAIVHMT--KLLLDYTGKIMWTPPAIFKSYCEIIV 156 (461)
T ss_dssp EEEEECCTTCBCCTT-THHHHSSEEEEGGGSCCCCEEESSCCCSCCTTCSSC--EEEECSBCCEEECCEEEEEEECCCCG
T ss_pred EeeeeECcccCCChh-hcCCccEEEecCCCEECCceeeeccccccccccccc--ceEEcCCccEEEeccccccccccccc
Confidence 468999999999997 7776554 47999999999999999877654333 37899999999999999999999999
Q ss_pred cccCCCCceeeeEEeecC
Q psy4842 78 KKFPFDEQECPLVLESCK 95 (95)
Q Consensus 78 ~~fPfD~q~C~l~~~S~~ 95 (95)
++||||+|+|+++|+||+
T Consensus 157 ~~FPfD~Q~C~l~f~S~~ 174 (461)
T 4aq5_A 157 THFPFDQQNCTMKLGIWT 174 (461)
T ss_dssp GGSSSSCEEEEEEEEESS
T ss_pred cCCCCccCccCeEEeccc
Confidence 999999999999999995
No 13
>4aq5_C Acetylcholine receptor delta subunit; membrane protein, freeze-trapping, asymmetric gating, allost mechanism; 6.20A {Torpedo marmorata} PDB: 4aq9_C
Probab=99.97 E-value=1e-30 Score=182.10 Aligned_cols=92 Identities=28% Similarity=0.471 Sum_probs=81.6
Q ss_pred CceEEeCCCcccCCCCccccccc---ccCceeecceEEeecccceeeccCcceeEEEEcCCCeEEEeecceEEEEecccC
Q psy4842 1 MRYRWVDPRLAHNAKENYLGEIN---LRDRVWTPHLYLVNEHDSRIMGSGRQDILISVQPDGTVLYSTRLKVTLLCLMNL 77 (95)
Q Consensus 1 l~~~W~D~rL~w~~~~~~~~~~~---~~~~iW~P~i~~~n~~~~~~~~~~~~~~~~~i~~~G~v~~~~~~~~~~~C~~d~ 77 (95)
++|+|+|+||+||++ +++++.. +.++||+||++++|++++.++.....+ +.|++||+|.|.+++++++.|+||+
T Consensus 79 l~q~W~D~RL~Wnp~-~y~gi~~l~vp~~~IW~PDi~l~N~~d~~~~~~~~~n--v~V~~dG~V~~~~~~~~~ssC~mdl 155 (522)
T 4aq5_C 79 MDHAWYDHRLTWNAS-EYSDISILRLRPELIWIPDIVLQNNNDGQYNVAYFCN--VLVRPNGYVTWLPPAIFRSSCPINV 155 (522)
T ss_dssp EEEEEECTTCCCCCC-CCCTCSCEEECGGGSCCCCEEETTTCSSCCBSCSSCC--EEECSSSEEEECCEEEEEECCCCTT
T ss_pred EeeeEeCcccCCCch-hcCCceEEeeccCCEECCcEeccccccCCccccccce--EEEeCCccEEEEccccccccccccc
Confidence 468999999999997 7766554 479999999999999998776655555 5699999999999999999999999
Q ss_pred cccCCCCceeeeEEeecC
Q psy4842 78 KKFPFDEQECPLVLESCK 95 (95)
Q Consensus 78 ~~fPfD~q~C~l~~~S~~ 95 (95)
++||||+|+|+|+|+||+
T Consensus 156 ~~FPfD~Q~C~L~f~S~~ 173 (522)
T 4aq5_C 156 LYFPFDWQNCSLKFTALN 173 (522)
T ss_dssp TSCSTTCCEEEEEEEETT
T ss_pred CcCCCcCceEeEEEeccc
Confidence 999999999999999996
No 14
>4aq5_B Acetylcholine receptor beta subunit; membrane protein, freeze-trapping, asymmetric gating, allost mechanism; 6.20A {Torpedo marmorata} PDB: 4aq9_B
Probab=99.96 E-value=1.6e-30 Score=180.22 Aligned_cols=92 Identities=28% Similarity=0.526 Sum_probs=81.7
Q ss_pred CceEEeCCCcccCCCCccccccc---ccCceeecceEEeecccceeeccCcceeEEEEcCCCeEEEeecceEEEEecccC
Q psy4842 1 MRYRWVDPRLAHNAKENYLGEIN---LRDRVWTPHLYLVNEHDSRIMGSGRQDILISVQPDGTVLYSTRLKVTLLCLMNL 77 (95)
Q Consensus 1 l~~~W~D~rL~w~~~~~~~~~~~---~~~~iW~P~i~~~n~~~~~~~~~~~~~~~~~i~~~G~v~~~~~~~~~~~C~~d~ 77 (95)
++|+|+|+||+|||+ +++++.. +.++||+||++++|++++.++.....+ +.|++||+|.|.+++++++.|+||+
T Consensus 80 l~~~W~D~rL~Wnp~-~y~gi~~l~v~~~~IW~PDi~l~N~~d~~~~~~~~~n--v~v~~~G~V~~~~~~~~~s~C~mdl 156 (493)
T 4aq5_B 80 LNLAWTDYRLQWDPA-AYEGIKDLSIPSDDVWQPDIVLMNNNDGSFEITLHVN--VLVQHTGAVSWHPSAIYRSSCTIKV 156 (493)
T ss_dssp CEEEEECTTCCCCHH-HHSSCSCEEECSCSSCCCCCEESSCCCSCEESSSSSC--EEECTTSEEEECCEEEEEECCSCTT
T ss_pred eecceECcccCCChh-hcCCeeEEecccccCccCcEEEecccccccccccccc--eEEecCCCEEEeeeeeeeecccccc
Confidence 578999999999996 6666554 479999999999999998877655554 5699999999999999999999999
Q ss_pred cccCCCCceeeeEEeecC
Q psy4842 78 KKFPFDEQECPLVLESCK 95 (95)
Q Consensus 78 ~~fPfD~q~C~l~~~S~~ 95 (95)
++||||+|+|+|+|+||+
T Consensus 157 ~~FPfD~Q~C~l~f~S~~ 174 (493)
T 4aq5_B 157 MYFPFDWQNCTMVFKSYT 174 (493)
T ss_dssp CSSSTTCCCCEEEEECSS
T ss_pred cCCCccceeEEEEEeeec
Confidence 999999999999999985
No 15
>4aq5_E Acetylcholine receptor gamma subunit; membrane protein, freeze-trapping, asymmetric gating, allost mechanism; 6.20A {Torpedo marmorata} PDB: 4aq9_E
Probab=99.96 E-value=7e-31 Score=181.77 Aligned_cols=92 Identities=27% Similarity=0.463 Sum_probs=81.5
Q ss_pred CceEEeCCCcccCCCCccccccc---ccCceeecceEEeecccceeeccCcceeEEEEcCCCeEEEeecceEEEEecccC
Q psy4842 1 MRYRWVDPRLAHNAKENYLGEIN---LRDRVWTPHLYLVNEHDSRIMGSGRQDILISVQPDGTVLYSTRLKVTLLCLMNL 77 (95)
Q Consensus 1 l~~~W~D~rL~w~~~~~~~~~~~---~~~~iW~P~i~~~n~~~~~~~~~~~~~~~~~i~~~G~v~~~~~~~~~~~C~~d~ 77 (95)
++|+|+|+||+||++ +++++.. +.++||+||++++|++++.++.....+ +.|++||+|.|.+++++++.|+||+
T Consensus 55 l~~~W~D~rL~Wnp~-~y~gi~~l~v~~~~IW~PDi~l~N~~d~~~~~~~~~n--v~v~~~G~V~~~~~~~~~s~C~mdl 131 (488)
T 4aq5_E 55 IEIQWNDYRLSWNTS-EYEGIDLVRIPSELLWLPDVVLENNVDGQFEVAYYAN--VLVYNDGSMYWLPPAIYRSTCPIAV 131 (488)
T ss_dssp EEEEEECCTTCCCTT-TTTTCSCCCCCTTSSCCCCEECSSSCCSCCBSCSSSC--CCBCTTSEEEECCEEBCEECCCCSS
T ss_pred eeeEEECcccCcCch-hcCCceEEecCccCEECCceehhcccccccccccccc--EEEeCCceEEEecceeEEeeccccc
Confidence 468999999999997 7776554 479999999999999998776655555 4589999999999999999999999
Q ss_pred cccCCCCceeeeEEeecC
Q psy4842 78 KKFPFDEQECPLVLESCK 95 (95)
Q Consensus 78 ~~fPfD~q~C~l~~~S~~ 95 (95)
++||||+|+|+|+|+||+
T Consensus 132 ~~FPfD~Q~C~l~f~S~~ 149 (488)
T 4aq5_E 132 TYFPFDWQNCSLVFRSQT 149 (488)
T ss_dssp SSSSSSCCCCCEEEEESS
T ss_pred ccCCCcCceeeEEeeeec
Confidence 999999999999999995
No 16
>2bj0_A Acetylcholine-binding protein; 3D-structure, glycoprotein, glycprotein, IGG fold, immunoglobulin domain, pentamer, signal; HET: CXS; 2.0A {Bulinus truncatus}
Probab=99.96 E-value=6.2e-30 Score=160.28 Aligned_cols=89 Identities=19% Similarity=0.354 Sum_probs=77.7
Q ss_pred CceEEeCCCc-ccCCCCcccccccccCceeecceEEeec-ccceeeccCcceeEEEEcCCCeEEEeecceEEEEecc-cC
Q psy4842 1 MRYRWVDPRL-AHNAKENYLGEINLRDRVWTPHLYLVNE-HDSRIMGSGRQDILISVQPDGTVLYSTRLKVTLLCLM-NL 77 (95)
Q Consensus 1 l~~~W~D~rL-~w~~~~~~~~~~~~~~~iW~P~i~~~n~-~~~~~~~~~~~~~~~~i~~~G~v~~~~~~~~~~~C~~-d~ 77 (95)
++|.|.|+|| +|+|++++..+..+.++||+||++++|+ +++.++.. ..++|++||+|.|.+++++++.|+| |+
T Consensus 52 ~~~~W~D~rL~~w~~~~~i~~~~~~~~~iW~PDi~~~N~~~~~~~~~~----~~v~i~~~G~V~~~~~~~~~~~C~m~dl 127 (203)
T 2bj0_A 52 TQASWKVPYYSSLLSSSSLDQVSLPVSKMWTPDLSFYNAIAAPELLSA----DRVVVSKDGSVIYVPSQRVRFTCDLINV 127 (203)
T ss_dssp EEEEEECGGGGGGTTTSSCSEEEEEGGGSCCCCEEETTCSSCCEECSC----CEEEEETTSEEEECCEEEEEEECCCTTT
T ss_pred EEeEEECcchhccCccCCceEEEEchhhccCCCccccccccccccccc----eEEEEeCCcEEEEecceEEEEEcccccc
Confidence 4689999999 9999732333444579999999999999 88877654 5588999999999999999999999 99
Q ss_pred cccCCCCceeeeEEeecC
Q psy4842 78 KKFPFDEQECPLVLESCK 95 (95)
Q Consensus 78 ~~fPfD~q~C~l~~~S~~ 95 (95)
++ ||+|+|+|+||||+
T Consensus 128 ~~--fD~Q~C~l~f~S~~ 143 (203)
T 2bj0_A 128 DT--EPGATCRIKVGSWT 143 (203)
T ss_dssp TS--SSCEEEEEEEEESS
T ss_pred Cc--cccceeeEEEEccc
Confidence 98 99999999999996
No 17
>4afh_A ACHBP; acetylcholine-binding protein, nicotinic receptor, ION chann; HET: NAG BMA MAN L0B; 1.88A {Capitella teleta} PDB: 4afg_A* 4b5d_A*
Probab=99.96 E-value=6.4e-30 Score=162.85 Aligned_cols=87 Identities=24% Similarity=0.397 Sum_probs=75.9
Q ss_pred CceEEeCCCcccCCCCccccccc---ccCceeecceEEeecccceeeccCcceeEEEEcCCCeEEEeecceEEEEecccC
Q psy4842 1 MRYRWVDPRLAHNAKENYLGEIN---LRDRVWTPHLYLVNEHDSRIMGSGRQDILISVQPDGTVLYSTRLKVTLLCLMNL 77 (95)
Q Consensus 1 l~~~W~D~rL~w~~~~~~~~~~~---~~~~iW~P~i~~~n~~~~~~~~~~~~~~~~~i~~~G~v~~~~~~~~~~~C~~d~ 77 (95)
++|.|+|+||+|+|+ +++++.. +.++||+||++++|++++.++.... ..++|++||+|.|.+++++++.|+|
T Consensus 65 l~~~W~D~rL~wnp~-~~~~i~~i~l~~~~IW~PDi~l~N~~~~~~~~~~~--~~v~v~~~G~V~~~~~~~~~s~C~m-- 139 (230)
T 4afh_A 65 VKLSWVDTILRWDPE-PPFDFQKIEISPDEIWTPDIKLFNSVDLDMTLDRT--TQAIVFSNGTVLWIPPAVLKVLCVS-- 139 (230)
T ss_dssp EEEEEECGGGCCCCC-TTSCCSEEEECGGGSCCCCEEETTCSSSSCEECTT--SCEEEETTSEEEECCEEEEEEEEEE--
T ss_pred EeeEEECccccCCcc-cCCCeeEEEeccCCEECCcEEEEeccccccccccc--ceEEEEcCCEEEEecCEEEEEECCC--
Confidence 468999999999997 7776654 4799999999999999987765333 3478999999999999999999999
Q ss_pred cccCCCCceeeeEEeecC
Q psy4842 78 KKFPFDEQECPLVLESCK 95 (95)
Q Consensus 78 ~~fPfD~q~C~l~~~S~~ 95 (95)
|||+|+|+|+||||+
T Consensus 140 ---PfD~Q~C~l~f~S~~ 154 (230)
T 4afh_A 140 ---QDDVDSCHFQFGSWV 154 (230)
T ss_dssp ---ETTEEEEEEEEEESS
T ss_pred ---CCCcccCCEeecccc
Confidence 999999999999996
No 18
>3rqw_A ELIC pentameric ligand gated ION channel from ERW chrysanthemi; membrane, transport protein; HET: ACH MES; 2.91A {Dickeya dadantii} PDB: 2yn6_A* 3rqu_A* 3uq4_A 3uq5_A 3uq7_A 2vl0_A 2yks_A 4a97_A* 4a96_A* 2yoe_A* 4a98_A*
Probab=99.96 E-value=4.3e-29 Score=165.30 Aligned_cols=91 Identities=24% Similarity=0.417 Sum_probs=77.9
Q ss_pred CceEEeCCCcccCCCCcccc-----cccccCceeecceEEeecccceeeccCcceeEEEEcCCCeEEEeecceEEEEecc
Q psy4842 1 MRYRWVDPRLAHNAKENYLG-----EINLRDRVWTPHLYLVNEHDSRIMGSGRQDILISVQPDGTVLYSTRLKVTLLCLM 75 (95)
Q Consensus 1 l~~~W~D~rL~w~~~~~~~~-----~~~~~~~iW~P~i~~~n~~~~~~~~~~~~~~~~~i~~~G~v~~~~~~~~~~~C~~ 75 (95)
++|+|+|+||+|+..+.+.. +..+.++||+||++++|++++.. ..+..++|++||+|.+..+++.++.|+|
T Consensus 39 l~~~W~D~rL~~~~~~~l~l~~~~~~~ip~~~IW~Pdi~l~N~~~~~~----~~~~~~~i~~~G~V~~~~~~~~~~~C~~ 114 (322)
T 3rqw_A 39 IVAQWTGKPRKTPGDKPLIVENTQIERWINNGLWVPALEFINVVGSPD----TGNKRLMLFPDGRVIYNARFLGSFSNDM 114 (322)
T ss_dssp EEEEEECSCCCCSTTSCEEEETHHHHHHHHTTCCCCCEEETTBSSCCE----EEEEEEEECTTSEEEEEEEEEEEEECCC
T ss_pred EeeEEechhhCCCCCCceeecchhhcccccccccCCcEEEEcccCccc----ccceeEEEeCCcCEEEeeceeEEEeccc
Confidence 47899999999965422211 13348999999999999998876 4566789999999999999999999999
Q ss_pred cCcccCCCCceeeeEEeecC
Q psy4842 76 NLKKFPFDEQECPLVLESCK 95 (95)
Q Consensus 76 d~~~fPfD~q~C~l~~~S~~ 95 (95)
|+++||||+|+|+++|+||+
T Consensus 115 dl~~FPfD~Q~C~l~f~S~~ 134 (322)
T 3rqw_A 115 DFRLFPFDRQQFVLELEPFS 134 (322)
T ss_dssp CCTTTTSCEEEEEEEEEESS
T ss_pred cccCCCCCCcEEEEEEEEcc
Confidence 99999999999999999985
No 19
>2wn9_A Soluble acetylcholine receptor; 4-0H-DMXBA, acetylcholine binding protein; HET: ZY5 NAG BMA MAN; 1.75A {Aplysia californica} PDB: 2wnj_A* 2wzy_A* 2x00_A* 3peo_A* 2pgz_A* 2ph9_A* 4dbm_A* 3c84_A* 2byq_A* 2byr_A* 2bys_A* 2wnc_A* 2wnl_A* 3c79_A* 2byn_A* 3pmz_A* 2x00_D* 2xnv_A* 2xnt_A* 2xnu_A* ...
Probab=99.95 E-value=5.4e-29 Score=158.38 Aligned_cols=87 Identities=17% Similarity=0.366 Sum_probs=78.1
Q ss_pred CceEEeCCCcccCCCCccccccc---ccCceeecceEEeecccceeeccCcceeEEEEcCCCeEEEeecceEEEEec---
Q psy4842 1 MRYRWVDPRLAHNAKENYLGEIN---LRDRVWTPHLYLVNEHDSRIMGSGRQDILISVQPDGTVLYSTRLKVTLLCL--- 74 (95)
Q Consensus 1 l~~~W~D~rL~w~~~~~~~~~~~---~~~~iW~P~i~~~n~~~~~~~~~~~~~~~~~i~~~G~v~~~~~~~~~~~C~--- 74 (95)
++|.|+|+||+|+|+ +++++.. +.++||+||++++|++++.++.. +..++|++||+|.|.+++++++.|+
T Consensus 65 l~~~W~D~rL~w~~~-~y~~i~~l~~~~~~IW~PDi~l~N~~~~~~~~~---~~~v~i~~~G~V~~~~~~~~~~~C~~~~ 140 (228)
T 2wn9_A 65 EQQRWKLNSLMWDPN-EYGNITDFRTSAADIWTPDITAYSSTRPVQVLS---PQIAVVTHDGSVMFIPAQRLSFMCDPTG 140 (228)
T ss_dssp EEEEEEEEEEECCGG-GGTTCCEEEEEGGGSCCCCEEESSBSSCCEECS---CCEEEEETEEEEEECCEEEEEEECCCTT
T ss_pred EEEEEECCCccCCch-hcCCeeEEEecHHHccCCceecccccccccccc---cceEEEeCCeEEEEeCCEEEEEECCCCC
Confidence 478999999999997 7776654 47999999999999999877654 6678999999999999999999999
Q ss_pred ccCcccCCCCceeeeEEeecC
Q psy4842 75 MNLKKFPFDEQECPLVLESCK 95 (95)
Q Consensus 75 ~d~~~fPfD~q~C~l~~~S~~ 95 (95)
||++ |+|+|+|+||||+
T Consensus 141 mdl~----D~Q~C~l~f~Sw~ 157 (228)
T 2wn9_A 141 VDSE----EGATCAVKFGSWV 157 (228)
T ss_dssp TTST----TCEEEEEEEEESS
T ss_pred CCCC----cCcEeeEEEEeec
Confidence 9999 9999999999996
No 20
>1uw6_A Acetylcholine-binding protein; pentamer, IGG fold, nicotine, glycoprotein; HET: NCT; 2.2A {Lymnaea stagnalis} SCOP: b.96.1.1 PDB: 1i9b_A* 1ux2_A* 3u8l_A* 1yi5_A 1uv6_A* 3u8k_A* 3u8j_B* 3u8m_A* 3u8n_A* 2zju_A* 2zjv_A*
Probab=99.95 E-value=6.2e-28 Score=151.93 Aligned_cols=87 Identities=22% Similarity=0.336 Sum_probs=75.4
Q ss_pred CceEEeCCCcccCCCCcccc-cccccCceeecceEEeecccceeeccCcceeEEEEcCCCeEEEeecceEEEEec---cc
Q psy4842 1 MRYRWVDPRLAHNAKENYLG-EINLRDRVWTPHLYLVNEHDSRIMGSGRQDILISVQPDGTVLYSTRLKVTLLCL---MN 76 (95)
Q Consensus 1 l~~~W~D~rL~w~~~~~~~~-~~~~~~~iW~P~i~~~n~~~~~~~~~~~~~~~~~i~~~G~v~~~~~~~~~~~C~---~d 76 (95)
++|.|+|+||+|+|+ ++++ +..+.++||+||++++|++++. . .... ..++|++||+|.+.+++++++.|+ ||
T Consensus 55 ~~~~W~D~rL~w~~~-~~~~~l~~~~~~iW~PDi~~~N~~~~~-~-~~~~-~~~~i~~~G~V~~~~~~~~~~~C~~~~md 130 (211)
T 1uw6_A 55 QQTTWSDRTLAWNSS-HSPDQVSVPISSLWVPDLAAYNAISKP-E-VLTP-QLARVVSDGEVLYMPSIRQRFSCDVSGVD 130 (211)
T ss_dssp EEEEEECGGGCCCCT-TSCSEEEEEGGGSCCCCEEETTBCSCC-E-ECSC-CEEEEETTSEEEECCEEEEEEECCCTTTT
T ss_pred EEeEeECcccccChh-hcCCeEEccHHHccCCCEeeecccccc-c-ccee-eEEEEeCCceEEEeCCEEEEEECCCCCCC
Confidence 468999999999997 6665 3334799999999999999886 3 2223 668999999999999999999999 99
Q ss_pred CcccCCCCceeeeEEeecC
Q psy4842 77 LKKFPFDEQECPLVLESCK 95 (95)
Q Consensus 77 ~~~fPfD~q~C~l~~~S~~ 95 (95)
++ |+|+|+|+||||+
T Consensus 131 l~----D~Q~C~l~f~S~~ 145 (211)
T 1uw6_A 131 TE----SGATCRIKIGSWT 145 (211)
T ss_dssp SS----SCEEEEEEEEESS
T ss_pred CC----cceEeEEEEEccc
Confidence 99 9999999999996
No 21
>3ol0_A De novo designed monomer trefoil-fold SUB-domain forms HOMO-trimer assembly; beta-trefoil, synthetic protein, function-COMP only; 1.48A {Synthetic construct}
Probab=28.91 E-value=36 Score=15.96 Aligned_cols=14 Identities=36% Similarity=0.544 Sum_probs=11.3
Q ss_pred eEEEEcCCCeEEEe
Q psy4842 51 ILISVQPDGTVLYS 64 (95)
Q Consensus 51 ~~~~i~~~G~v~~~ 64 (95)
..++|.+||+|.=+
T Consensus 17 f~LqI~PdG~V~GT 30 (48)
T 3ol0_A 17 QYLRINPDGTVDGT 30 (48)
T ss_dssp CEEEECTTSBEEEE
T ss_pred EEeEECCCCCCccc
Confidence 34789999999865
No 22
>3jtz_A Integrase; four stranded beta-sheet, DNA binding protein; 1.30A {Yersinia pestis} PDB: 3rmp_A
Probab=26.75 E-value=75 Score=16.54 Aligned_cols=18 Identities=17% Similarity=0.493 Sum_probs=13.5
Q ss_pred eEEEEcCCCeEEEeecce
Q psy4842 51 ILISVQPDGTVLYSTRLK 68 (95)
Q Consensus 51 ~~~~i~~~G~v~~~~~~~ 68 (95)
-.++|.++|.-.|..+..
T Consensus 26 L~L~V~psG~K~w~~ryr 43 (88)
T 3jtz_A 26 LYLLVKPGGSRHWYLKYR 43 (88)
T ss_dssp EEEEECTTSCEEEEEEEE
T ss_pred eEEEEecCCCEEEEEEEE
Confidence 457889999888876654
No 23
>1i31_A Clathrin coat assembly protein AP50; beta-sandwich, peptide-binding site, protein-peptide complex, clathrin adaptor; 2.50A {Rattus norvegicus} SCOP: b.2.7.1 PDB: 1bw8_A 2pr9_A 3h85_A 1bxx_A 1hes_A 1h6e_A
Probab=25.16 E-value=1.2e+02 Score=19.72 Aligned_cols=36 Identities=22% Similarity=0.453 Sum_probs=22.9
Q ss_pred eEEEEcCCCeEEEeecceEEEEecccCcccCCCCceeeeEE
Q psy4842 51 ILISVQPDGTVLYSTRLKVTLLCLMNLKKFPFDEQECPLVL 91 (95)
Q Consensus 51 ~~~~i~~~G~v~~~~~~~~~~~C~~d~~~fPfD~q~C~l~~ 91 (95)
..+.+..+|.|.. ..+.....|...+.-.| .|.|.|
T Consensus 60 v~~~i~~~G~v~~-~eV~G~I~~~~~LsG~P----~l~l~L 95 (314)
T 1i31_A 60 VNLLMSPQGQVLS-AHVSGRVVMKSYLSGMP----ECKFGM 95 (314)
T ss_dssp EEEEECSSCCEEE-EEEEEEEEEEEECSSSC----EEEEEE
T ss_pred EEEEECCCCCEEE-EEEEEEEEEEEEcCCCC----eEEEEE
Confidence 4466888888874 34666666666666666 465555
No 24
>3ju0_A Phage integrase; four stranded beta-sheet, DNA binding protein; 1.60A {Pectobacterium atrosepticum}
Probab=24.46 E-value=93 Score=16.88 Aligned_cols=18 Identities=17% Similarity=0.504 Sum_probs=13.5
Q ss_pred eEEEEcCCCeEEEeecce
Q psy4842 51 ILISVQPDGTVLYSTRLK 68 (95)
Q Consensus 51 ~~~~i~~~G~v~~~~~~~ 68 (95)
-.++|.++|.-.|..+..
T Consensus 26 L~L~V~psG~K~w~~rYr 43 (108)
T 3ju0_A 26 MHLLVHPNGSKYWRLSYR 43 (108)
T ss_dssp EEEEECTTSCEEEEEEEE
T ss_pred eEEEEEcCCCEEEEEEEE
Confidence 447899999888876554
No 25
>1ux6_A Thrombospondin-1; extracellular matrix, calcium binding, L-type lectin, glycoprotein, cell adhesion, calcium-binding, heparin- binding; 1.9A {Homo sapiens} SCOP: b.29.1.16 g.75.1.1
Probab=22.53 E-value=1.8e+02 Score=19.52 Aligned_cols=66 Identities=17% Similarity=0.256 Sum_probs=32.4
Q ss_pred eEEeCCC-cccCCCCccccc--ccc-----cCceeecceEEeecccceeeccCcce--eEEEEcCCCeEEEeecceEEEE
Q psy4842 3 YRWVDPR-LAHNAKENYLGE--INL-----RDRVWTPHLYLVNEHDSRIMGSGRQD--ILISVQPDGTVLYSTRLKVTLL 72 (95)
Q Consensus 3 ~~W~D~r-L~w~~~~~~~~~--~~~-----~~~iW~P~i~~~n~~~~~~~~~~~~~--~~~~i~~~G~v~~~~~~~~~~~ 72 (95)
.-|+|++ |-|.....|... ..+ +-.+..|..++.++-. +....... .-+.+++.+.|+|+. ++..
T Consensus 272 ~LW~d~~~~gW~d~t~y~w~l~hrp~~g~ir~~~~~g~~~~~DsG~--i~d~t~~GgrlG~~~fsQ~~v~~s~---l~y~ 346 (350)
T 1ux6_A 272 TLWHDPRHIGWKDFTAYRWRLSHRPKTGFIRVVMYEGKKIMADSGP--IYDKTYAGGRLGLFVFSQEMVFFSD---LKYE 346 (350)
T ss_dssp EEEECTTCCCCCTTCEEEEEEEEETTTTEEEEEEEETTEEEEECCC--EECCSCCCEEEEEEEESCSSEEEEE---EEEE
T ss_pred HhhcCCccccccCCccceeEEeecCccceEEEEEecCCeEeeccce--EEEeeecCCceEEEEcccccEEEec---cEEe
Confidence 4588875 777654223222 222 2333445544433211 11222222 224578899999975 5555
Q ss_pred e
Q psy4842 73 C 73 (95)
Q Consensus 73 C 73 (95)
|
T Consensus 347 c 347 (350)
T 1ux6_A 347 C 347 (350)
T ss_dssp E
T ss_pred C
Confidence 6
No 26
>1wmv_A WWOX, WW domain containing oxidoreductase; all-beta, apoptosis; NMR {Homo sapiens}
Probab=22.19 E-value=25 Score=16.70 Aligned_cols=13 Identities=38% Similarity=0.723 Sum_probs=9.7
Q ss_pred eEEeCCCcccCCC
Q psy4842 3 YRWVDPRLAHNAK 15 (95)
Q Consensus 3 ~~W~D~rL~w~~~ 15 (95)
-+|.|||+....+
T Consensus 36 TtwedPr~~~~~~ 48 (54)
T 1wmv_A 36 TTYLDPRLAFTVD 48 (54)
T ss_dssp EESSCTTSSCCCC
T ss_pred EeecCCCCccccc
Confidence 3689999987653
No 27
>1jmq_A YAP65, 65 kDa YES-associated protein; polyproline ligand, YAP65 mutant, structural protein; NMR {Homo sapiens} SCOP: b.72.1.1 PDB: 1k9q_A* 1k9r_A 1k5r_A* 2lax_A* 2lay_A*
Probab=22.10 E-value=19 Score=16.29 Aligned_cols=9 Identities=56% Similarity=1.055 Sum_probs=7.1
Q ss_pred EEeCCCccc
Q psy4842 4 RWVDPRLAH 12 (95)
Q Consensus 4 ~W~D~rL~w 12 (95)
+|.|||++.
T Consensus 34 ~W~dPr~~~ 42 (46)
T 1jmq_A 34 TWQDPRKAM 42 (46)
T ss_dssp ESSCTTTSS
T ss_pred eecCCCchh
Confidence 789998863
No 28
>3l81_A AP-4 complex subunit MU-1; immunoglobulin-like beta-sandwich, coated PIT, golgi apparat membrane, phosphoprotein, protein transport, transport; 1.60A {Homo sapiens}
Probab=21.80 E-value=1.7e+02 Score=18.90 Aligned_cols=37 Identities=14% Similarity=0.126 Sum_probs=23.9
Q ss_pred eeEEEEcCCCeEEEeecceEEEEecccCcccCCCCceeeeEE
Q psy4842 50 DILISVQPDGTVLYSTRLKVTLLCLMNLKKFPFDEQECPLVL 91 (95)
Q Consensus 50 ~~~~~i~~~G~v~~~~~~~~~~~C~~d~~~fPfD~q~C~l~~ 91 (95)
...+.+..+|.|... .+.....|...+.-.| .|.|.|
T Consensus 42 ~v~~~~~~~G~v~~~-eV~G~I~~~~~LsG~P----~~~l~L 78 (301)
T 3l81_A 42 RLSVLIASNGSLLKV-DVQGEIRLKSFLPSGS----EMRIGL 78 (301)
T ss_dssp EEEEEECTTSCEEEE-EEEEEEEEEECCCTTC----EEEEEE
T ss_pred EEEEEECCCCCEEEE-EEEEEEEEEEeCCCCC----eEEEEE
Confidence 344668899987764 4566666666666666 466654
No 29
>4en2_M AP-1 complex subunit MU-1; human immunodeficiency virus 1, HIV, NEF, antigen presentation, HOST defense, adaptor protein complex 1, MU1 subunit; 2.58A {Mus musculus} PDB: 4emz_A
Probab=20.91 E-value=1.6e+02 Score=18.60 Aligned_cols=34 Identities=29% Similarity=0.350 Sum_probs=17.7
Q ss_pred EEEcCCCeEEEeecceEEEEecccCcccCCCCceeeeEE
Q psy4842 53 ISVQPDGTVLYSTRLKVTLLCLMNLKKFPFDEQECPLVL 91 (95)
Q Consensus 53 ~~i~~~G~v~~~~~~~~~~~C~~d~~~fPfD~q~C~l~~ 91 (95)
+.+..+|.+... .+.....|...+.-.| .|.|.|
T Consensus 24 ~~~~~~G~v~~~-~v~G~i~~~~~lsG~p----~~~l~l 57 (266)
T 4en2_M 24 LLVSANGNVLRS-EIVGSIKMRVFLSGMP----ELRLGL 57 (266)
T ss_dssp EEECTTSCEEEE-EEEEEEEEEEECCSCC----EEEEEE
T ss_pred EEECCCCCEEEE-EEEEEEEEEEECCCCC----EEEEEE
Confidence 556677766543 3344445544555555 355544
Done!