RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy4842
(95 letters)
>3rhw_A Avermectin-sensitive glutamate-gated chloride CHA alpha; membrane
protein, transport protein, Cys-loop receptor, LIGA ION
channel, neurotransmitter receptor; HET: NAG IVM LMT
UND; 3.26A {Caenorhabditis elegans} PDB: 3ri5_A* 3ria_A*
3rif_A*
Length = 347
Score = 114 bits (288), Expect = 1e-32
Identities = 30/97 (30%), Positives = 51/97 (52%), Gaps = 3/97 (3%)
Query: 1 MRYRWVDPRLAHNAKENY---LGEINLRDRVWTPHLYLVNEHDSRIMGSGRQDILISVQP 57
+R W+D RL++ K + + + ++W P + NE + + ++LI +
Sbjct: 55 LRESWIDKRLSYGVKGDGQPDFVILTVGHQIWMPDTFFPNEKQAYKHTIDKPNVLIRIHN 114
Query: 58 DGTVLYSTRLKVTLLCLMNLKKFPFDEQECPLVLESC 94
DGTVLYS R+ + L C M L+ +P D Q+C + L S
Sbjct: 115 DGTVLYSVRISLVLSCPMYLQYYPMDVQQCSIDLASY 151
>3igq_A GLR4197 protein; plgic Cys-loop, membrane protein, transport
protein; 2.30A {Gloeobacter violaceus}
Length = 201
Score = 109 bits (275), Expect = 5e-32
Identities = 24/94 (25%), Positives = 40/94 (42%), Gaps = 5/94 (5%)
Query: 1 MRYRWVDPRLAHNAKENYLGEIN-LRDRVWTPHLYLVNEHDSRIMGSGRQDILISVQPDG 59
+ W D RLA + + + + +W P + VN ++R + ISV PDG
Sbjct: 43 LSLSWKDRRLAFDPVRSGVRVKTYEPEAIWIPEIRFVNVENARDAD----VVDISVSPDG 98
Query: 60 TVLYSTRLKVTLLCLMNLKKFPFDEQECPLVLES 93
TV Y R +L ++ ++ D Q + L
Sbjct: 99 TVQYLERFSARVLSPLDGRRTESDSQTLHIYLIV 132
>3rqw_A ELIC pentameric ligand gated ION channel from ERW chrysanthemi;
membrane, transport protein; HET: ACH MES; 2.91A
{Dickeya dadantii} PDB: 3rqu_A* 3uq4_A 3uq5_A 3uq7_A
2vl0_A 2yks_A
Length = 322
Score = 111 bits (279), Expect = 2e-31
Identities = 23/98 (23%), Positives = 40/98 (40%), Gaps = 9/98 (9%)
Query: 1 MRYRWVDPRLAHNAKENYLGEI-----NLRDRVWTPHLYLVNEHDSRIMGSGRQDILISV 55
+ +W + + E + + +W P L +N S G + + +
Sbjct: 39 IVAQWTGKPRKTPGDKPLIVENTQIERWINNGLWVPALEFINVVGSPDTG----NKRLML 94
Query: 56 QPDGTVLYSTRLKVTLLCLMNLKKFPFDEQECPLVLES 93
PDG V+Y+ R + M+ + FPFD Q+ L LE
Sbjct: 95 FPDGRVIYNARFLGSFSNDMDFRLFPFDRQQFVLELEP 132
>3tlw_A GLR4197 protein, GLIC; Cys-loop receptor family, membrane protein,
transport protei; HET: LMT; 2.60A {Gloeobacter
violaceus} PDB: 3uu4_A* 3uub_A* 3tlv_A* 3uu6_A* 3uu5_A*
3uu3_A* 3tlu_A* 3uu8_A* 3tls_A* 3tlt_A* 3p4w_A* 3p50_A*
3eam_A* 3ehz_A 2xq4_A 2xq5_A 2xq6_A 2xq3_A 2xq8_A 2xqa_A
...
Length = 321
Score = 103 bits (258), Expect = 2e-28
Identities = 26/94 (27%), Positives = 43/94 (45%), Gaps = 5/94 (5%)
Query: 1 MRYRWVDPRLAHNAKENYLGEINL-RDRVWTPHLYLVNEHDSRIMGSGRQDILISVQPDG 59
+ W D RLA + + + + +W P + VN ++R + ISV PDG
Sbjct: 47 LSLSWKDRRLAFDPVRSGVRVKTYEPEAIWIPEIRFVNVENARDADV----VDISVSPDG 102
Query: 60 TVLYSTRLKVTLLCLMNLKKFPFDEQECPLVLES 93
TV Y R +L ++ +++PFD Q + L
Sbjct: 103 TVQYLERFSARVLSPLDFRRYPFDSQTLHIYLIV 136
>2bg9_A Acetylcholine receptor protein, alpha chain; ION channel/receptor,
ION channel, electron microscopy, ION transport,
postsynaptic membrane; 4.00A {Torpedo marmorata}
Length = 370
Score = 65.3 bits (159), Expect = 3e-14
Identities = 28/96 (29%), Positives = 43/96 (44%), Gaps = 6/96 (6%)
Query: 1 MRYRWVDPRLAHNAKENYLG--EINLR-DRVWTPHLYLVNEHDSRIMGSGRQDILISVQP 57
+R +W+D RL N + Y G +I L D VW P L L N D +L+
Sbjct: 56 LRQQWIDVRLRWNPAD-YGGIKKIRLPSDDVWLPDLVLYNNADGDFAIVHMTKLLLD--Y 112
Query: 58 DGTVLYSTRLKVTLLCLMNLKKFPFDEQECPLVLES 93
G ++++ C + + FPFD+Q C + L
Sbjct: 113 TGKIMWTPPAIFKSYCEIIVTHFPFDQQNCTMKLGI 148
>2qc1_B Acetylcholine receptor subunit alpha; nicotinic acetylcholine
receptor, glycosylated protein, beta sandwich, Cys-loop,
buried hydrophilic residues; HET: NAG MAN; 1.94A {Mus
musculus} PDB: 1l4w_B 1ljz_B
Length = 212
Score = 63.6 bits (155), Expect = 5e-14
Identities = 23/96 (23%), Positives = 41/96 (42%), Gaps = 6/96 (6%)
Query: 1 MRYRWVDPRLAHNAKENYLGEINLR---DRVWTPHLYLVNEHDSRIMGSGRQDILISVQP 57
++ +WVD L N + Y G + +++W P + L N D +L+
Sbjct: 57 LKQQWVDYNLKWNPDD-YGGVKKIHIPSEKIWRPDVVLYNNADGDFAIVKFTKVLLD--Y 113
Query: 58 DGTVLYSTRLKVTLLCLMNLKKFPFDEQECPLVLES 93
G + ++ C + + FPFDEQ C + L +
Sbjct: 114 TGHITWTPPAIFKSYCEIIVTHFPFDEQNCSMKLGT 149
>2bg9_E Acetylcholine receptor protein, gamma chain; ION channel/receptor,
ION channel, electron microscopy, ION transport,
postsynaptic membrane; 4.00A {Torpedo marmorata}
Length = 370
Score = 62.2 bits (151), Expect = 3e-13
Identities = 27/96 (28%), Positives = 44/96 (45%), Gaps = 6/96 (6%)
Query: 1 MRYRWVDPRLAHNAKENYLGEINLR---DRVWTPHLYLVNEHDSRIMGSGRQDILISVQP 57
+ +W D RL+ N E Y G +R + +W P + L N D + + ++L+
Sbjct: 55 IEIQWNDYRLSWNTSE-YEGIDLVRIPSELLWLPDVVLENNVDGQFEVAYYANVLVY--N 111
Query: 58 DGTVLYSTRLKVTLLCLMNLKKFPFDEQECPLVLES 93
DG++ + C + + FPFD Q C LV S
Sbjct: 112 DGSMYWLPPAIYRSTCPIAVTYFPFDWQNCSLVFRS 147
>2bg9_C Acetylcholine receptor protein, delta chain; ION channel/receptor,
ION channel, electron microscopy, ION transport,
postsynaptic membrane; 4.00A {Torpedo marmorata}
Length = 369
Score = 62.2 bits (151), Expect = 4e-13
Identities = 29/96 (30%), Positives = 45/96 (46%), Gaps = 6/96 (6%)
Query: 1 MRYRWVDPRLAHNAKENYLG--EINLR-DRVWTPHLYLVNEHDSRIMGSGRQDILISVQP 57
M + W D RL NA E Y + LR + +W P + L N +D + + ++L+ P
Sbjct: 58 MDHAWYDHRLTWNASE-YSDISILRLRPELIWIPDIVLQNNNDGQYNVAYFCNVLVR--P 114
Query: 58 DGTVLYSTRLKVTLLCLMNLKKFPFDEQECPLVLES 93
+G V + C +N+ FPFD Q C L +
Sbjct: 115 NGYVTWLPPAIFRSSCPINVLYFPFDWQNCSLKFTA 150
>4aq5_A Acetylcholine receptor subunit alpha; membrane protein,
freeze-trapping, asymmetric gating, allost mechanism;
6.20A {Torpedo marmorata} PDB: 4aq9_A
Length = 461
Score = 61.9 bits (150), Expect = 5e-13
Identities = 27/96 (28%), Positives = 42/96 (43%), Gaps = 6/96 (6%)
Query: 1 MRYRWVDPRLAHNAKENYLGEINLR---DRVWTPHLYLVNEHDSRIMGSGRQDILISVQP 57
+R +W+D RL N + Y G +R D VW P L L N D +L+
Sbjct: 80 LRQQWIDVRLRWNPAD-YGGIKKIRLPSDDVWLPDLVLYNNADGDFAIVHMTKLLLD--Y 136
Query: 58 DGTVLYSTRLKVTLLCLMNLKKFPFDEQECPLVLES 93
G ++++ C + + FPFD+Q C + L
Sbjct: 137 TGKIMWTPPAIFKSYCEIIVTHFPFDQQNCTMKLGI 172
>2bg9_B Acetylcholine receptor protein, beta chain; ION channel/receptor,
ION channel, electron microscopy, ION transport,
postsynaptic membrane; 4.00A {Torpedo marmorata}
Length = 370
Score = 60.7 bits (147), Expect = 1e-12
Identities = 26/96 (27%), Positives = 41/96 (42%), Gaps = 6/96 (6%)
Query: 1 MRYRWVDPRLAHNAKENYLGEINLR---DRVWTPHLYLVNEHDSRIMGSGRQDILISVQP 57
+ W D RL + Y G +L D VW P + L+N +D + ++L+
Sbjct: 56 LNLAWTDYRLQWDPAA-YEGIKDLSIPSDDVWQPDIVLMNNNDGSFEITLHVNVLVQ--H 112
Query: 58 DGTVLYSTRLKVTLLCLMNLKKFPFDEQECPLVLES 93
G V + C + + FPFD Q C +V +S
Sbjct: 113 TGAVSWHPSAIYRSSCTIKVMYFPFDWQNCTMVFKS 148
>4aq5_C Acetylcholine receptor delta subunit; membrane protein,
freeze-trapping, asymmetric gating, allost mechanism;
6.20A {Torpedo marmorata} PDB: 4aq9_C
Length = 522
Score = 60.2 bits (145), Expect = 2e-12
Identities = 29/96 (30%), Positives = 44/96 (45%), Gaps = 6/96 (6%)
Query: 1 MRYRWVDPRLAHNAKENYLGEINLR---DRVWTPHLYLVNEHDSRIMGSGRQDILISVQP 57
M + W D RL NA E Y LR + +W P + L N +D + + ++L+ P
Sbjct: 79 MDHAWYDHRLTWNASE-YSDISILRLRPELIWIPDIVLQNNNDGQYNVAYFCNVLVR--P 135
Query: 58 DGTVLYSTRLKVTLLCLMNLKKFPFDEQECPLVLES 93
+G V + C +N+ FPFD Q C L +
Sbjct: 136 NGYVTWLPPAIFRSSCPINVLYFPFDWQNCSLKFTA 171
>4aq5_B Acetylcholine receptor beta subunit; membrane protein,
freeze-trapping, asymmetric gating, allost mechanism;
6.20A {Torpedo marmorata} PDB: 4aq9_B
Length = 493
Score = 60.1 bits (145), Expect = 2e-12
Identities = 26/96 (27%), Positives = 41/96 (42%), Gaps = 6/96 (6%)
Query: 1 MRYRWVDPRLAHNAKENYLGEINLR---DRVWTPHLYLVNEHDSRIMGSGRQDILISVQP 57
+ W D RL + Y G +L D VW P + L+N +D + ++L+
Sbjct: 80 LNLAWTDYRLQWDPAA-YEGIKDLSIPSDDVWQPDIVLMNNNDGSFEITLHVNVLVQ--H 136
Query: 58 DGTVLYSTRLKVTLLCLMNLKKFPFDEQECPLVLES 93
G V + C + + FPFD Q C +V +S
Sbjct: 137 TGAVSWHPSAIYRSSCTIKVMYFPFDWQNCTMVFKS 172
>4aq5_E Acetylcholine receptor gamma subunit; membrane protein,
freeze-trapping, asymmetric gating, allost mechanism;
6.20A {Torpedo marmorata} PDB: 4aq9_E
Length = 488
Score = 59.8 bits (144), Expect = 3e-12
Identities = 27/96 (28%), Positives = 44/96 (45%), Gaps = 6/96 (6%)
Query: 1 MRYRWVDPRLAHNAKENYLGEINLR---DRVWTPHLYLVNEHDSRIMGSGRQDILISVQP 57
+ +W D RL+ N E Y G +R + +W P + L N D + + ++L+
Sbjct: 55 IEIQWNDYRLSWNTSE-YEGIDLVRIPSELLWLPDVVLENNVDGQFEVAYYANVLVY--N 111
Query: 58 DGTVLYSTRLKVTLLCLMNLKKFPFDEQECPLVLES 93
DG++ + C + + FPFD Q C LV S
Sbjct: 112 DGSMYWLPPAIYRSTCPIAVTYFPFDWQNCSLVFRS 147
>1uw6_A Acetylcholine-binding protein; pentamer, IGG fold, nicotine,
glycoprotein; HET: NCT; 2.2A {Lymnaea stagnalis} SCOP:
b.96.1.1 PDB: 1i9b_A* 1ux2_A* 3u8l_A* 1yi5_A 1uv6_A*
3u8k_A* 3u8j_B* 3u8m_A* 3u8n_A* 2zju_A* 2zjv_A*
Length = 211
Score = 57.2 bits (138), Expect = 1e-11
Identities = 19/94 (20%), Positives = 32/94 (34%), Gaps = 6/94 (6%)
Query: 1 MRYRWVDPRLAHNAKENYLGEINLR-DRVWTPHLYLVNEHDSRIMGSGRQDILISVQPDG 59
+ W D LA N+ ++++ +W P L N L V DG
Sbjct: 55 QQTTWSDRTLAWNSSH-SPDQVSVPISSLWVPDLAAYNAIS---KPEVLTPQLARVVSDG 110
Query: 60 TVLYSTRLKVTLLCLMNLKKFPFDEQECPLVLES 93
VLY ++ C ++ C + + S
Sbjct: 111 EVLYMPSIRQRFSCDVSGVDTE-SGATCRIKIGS 143
>2wn9_A Soluble acetylcholine receptor; 4-0H-DMXBA, acetylcholine binding
protein; HET: ZY5 NAG BMA MAN; 1.75A {Aplysia
californica} PDB: 2wnj_A* 2wzy_A* 2x00_A* 3peo_A*
2pgz_A* 2ph9_A* 4dbm_A* 3c84_A* 2byq_A* 2byr_A* 2bys_A*
2wnc_A* 2wnl_A* 3c79_A* 2byn_A* 3pmz_A* 2x00_D* 2xnv_A*
2xnt_A* 2xnu_A* ...
Length = 228
Score = 54.4 bits (131), Expect = 1e-10
Identities = 16/96 (16%), Positives = 32/96 (33%), Gaps = 8/96 (8%)
Query: 1 MRYRWVDPRLAHNAKENYLGEINLR---DRVWTPHLYLVNEHDSRIMGSGRQDILISVQP 57
+ RW L + E Y + R +WTP + + + V
Sbjct: 65 EQQRWKLNSLMWDPNE-YGNITDFRTSAADIWTPDITAYSSTRP---VQVLSPQIAVVTH 120
Query: 58 DGTVLYSTRLKVTLLCLMNLKKFPFDEQECPLVLES 93
DG+V++ +++ +C + C + S
Sbjct: 121 DGSVMFIPAQRLSFMCDPT-GVDSEEGATCAVKFGS 155
>4afh_A ACHBP; acetylcholine-binding protein, nicotinic receptor, ION
chann; HET: NAG BMA MAN L0B; 1.88A {Capitella teleta}
PDB: 4afg_A*
Length = 230
Score = 52.6 bits (126), Expect = 7e-10
Identities = 20/96 (20%), Positives = 34/96 (35%), Gaps = 11/96 (11%)
Query: 1 MRYRWVDPRLAHNAKENYLGEINLR---DRVWTPHLYLVNEHDSRIMGSGRQDILISVQP 57
++ WVD L + + + D +WTP + L N D + ++
Sbjct: 65 VKLSWVDTILRWDPEP-PFDFQKIEISPDEIWTPDIKLFNSVDLDMTLDRTTQAIVF--S 121
Query: 58 DGTVLYSTRLKVTLLCLMNLKKFPFDEQECPLVLES 93
+GTVL+ + +LC D C S
Sbjct: 122 NGTVLWIPPAVLKVLC-----VSQDDVDSCHFQFGS 152
>3sq6_A ACHBP, neuronal acetylcholine receptor subunit alpha-7,
acetylcholine-binding protein; nicotinic receptor; HET:
EPJ NAG; 2.80A {Homo sapiens} PDB: 3sq9_A*
Length = 204
Score = 50.6 bits (121), Expect = 2e-09
Identities = 20/96 (20%), Positives = 28/96 (29%), Gaps = 8/96 (8%)
Query: 1 MRYRWVDPRLAHNAKENYLGEINLR---DRVWTPHLYLVNEHDSRIMGSGRQDILISVQP 57
++ W D L N E Y G + +W P L N L V
Sbjct: 54 LQMSWTDHYLQWNVSE-YPGVKQVSVPISSLWVPDLAAYNAIS---KPEVLTPQLALVNS 109
Query: 58 DGTVLYSTRLKVTLLCLMNLKKFPFDEQECPLVLES 93
G V Y ++ C ++ C L S
Sbjct: 110 SGHVQYLPSIRQRFSCDVSGVDTE-SGATCKLKFGS 144
>2bj0_A Acetylcholine-binding protein; 3D-structure, glycoprotein,
glycprotein, IGG fold, immunoglobulin domain, pentamer,
signal; HET: CXS; 2.0A {Bulinus truncatus}
Length = 203
Score = 49.8 bits (119), Expect = 6e-09
Identities = 18/94 (19%), Positives = 34/94 (36%), Gaps = 5/94 (5%)
Query: 1 MRYRWVDPRLAHNAKENYLGEINLR-DRVWTPHLYLVNEHDSRIMGSGRQDILISVQPDG 59
+ W P + + L +++L ++WTP L N + V DG
Sbjct: 52 TQASWKVPYYSSLLSSSSLDQVSLPVSKMWTPDLSFYNAIA---APELLSADRVVVSKDG 108
Query: 60 TVLYSTRLKVTLLCLMNLKKFPFDEQECPLVLES 93
+V+Y +V C + + C + + S
Sbjct: 109 SVIYVPSQRVRFTCDL-INVDTEPGATCRIKVGS 141
>3scy_A Hypothetical bacterial 6-phosphogluconolactonase; 7-bladed
beta-propeller, structural genomics, joint center F
structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides
fragilis} PDB: 3fgb_A
Length = 361
Score = 27.8 bits (62), Expect = 0.53
Identities = 16/59 (27%), Positives = 20/59 (33%), Gaps = 24/59 (40%)
Query: 31 PHLYLVNEHDSRIM---------------------GSGRQDILISVQPDGTVLY-STRL 67
YL+NE ++ G DI +S PDG LY S RL
Sbjct: 223 KFAYLINEIGGTVIAFRYADGMLDEIQTVAADTVNAQGSGDIHLS--PDGKYLYASNRL 279
>3afo_A NADH kinase POS5; alpha/beta+BETA sandwich, ATP-binding,
mitochondrion NADP, nucleotide-binding, transferase,
transit peptide; HET: NAI; 2.00A {Saccharomyces
cerevisiae}
Length = 388
Score = 25.9 bits (57), Expect = 2.5
Identities = 12/64 (18%), Positives = 28/64 (43%), Gaps = 7/64 (10%)
Query: 5 WVDPRLAHNAKENYLGEI-NLRDRVWTPHLYLVNEHDSRIMGSGRQDILISVQPDGTVLY 63
V P +A +++ + N +R + + +R D+L+++ DGT+L+
Sbjct: 76 IVQPDVAEEISQDFKSPLENDPNRPHILYTGPEQDIVNRT------DLLVTLGGDGTILH 129
Query: 64 STRL 67
+
Sbjct: 130 GVSM 133
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 25.8 bits (56), Expect = 2.7
Identities = 11/50 (22%), Positives = 21/50 (42%), Gaps = 7/50 (14%)
Query: 15 KENYLG---EINLRDRVWTPHLYL-VNEHDSRIMGSGRQDIL---ISVQP 57
+ENY E + ++ T ++ +NEH + + +L QP
Sbjct: 1685 RENYSAMIFETIVDGKLKTEKIFKEINEHSTSYTFRSEKGLLSATQFTQP 1734
>3m4x_A NOL1/NOP2/SUN family protein; mtase domain, PUA domain, RRM motif,
transferase; 2.28A {Enterococcus faecium}
Length = 456
Score = 24.2 bits (53), Expect = 9.5
Identities = 14/60 (23%), Positives = 23/60 (38%), Gaps = 23/60 (38%)
Query: 46 SGRQ-DILIS----VQPDGTVLYSTRLKVTLLCLMN-----------LKKFPFDEQECPL 89
RQ +IL S ++ G ++YST C ++ +P +E PL
Sbjct: 210 QKRQQEILSSAIKMLKNKGQLIYST-------CTFAPEENEEIISWLVENYPVTIEEIPL 262
>2x7b_A N-acetyltransferase SSO0209; HET: COA; 1.95A {Sulfolobus
solfataricus}
Length = 168
Score = 23.8 bits (52), Expect = 9.9
Identities = 3/15 (20%), Positives = 7/15 (46%)
Query: 31 PHLYLVNEHDSRIMG 45
+ V D+ ++G
Sbjct: 51 GLAFFVAIVDNSVVG 65
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.323 0.140 0.442
Gapped
Lambda K H
0.267 0.0513 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 1,477,913
Number of extensions: 72975
Number of successful extensions: 172
Number of sequences better than 10.0: 1
Number of HSP's gapped: 148
Number of HSP's successfully gapped: 25
Length of query: 95
Length of database: 6,701,793
Length adjustment: 62
Effective length of query: 33
Effective length of database: 4,970,691
Effective search space: 164032803
Effective search space used: 164032803
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 51 (23.9 bits)