Query psy4843
Match_columns 277
No_of_seqs 189 out of 1102
Neff 5.3
Searched_HMMs 46136
Date Fri Aug 16 19:09:13 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy4843.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/4843hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF01595 DUF21: Domain of unkn 100.0 4.4E-27 9.5E-32 201.2 20.7 158 88-277 2-172 (183)
2 COG4536 CorB Putative Mg2+ and 99.9 2.8E-27 6.1E-32 225.2 13.8 161 84-276 1-175 (423)
3 TIGR03520 GldE gliding motilit 99.9 8.7E-26 1.9E-30 219.1 19.7 151 93-276 2-167 (408)
4 PRK11573 hypothetical protein; 99.9 5.4E-25 1.2E-29 214.0 18.3 149 96-276 2-164 (413)
5 COG1253 TlyC Hemolysins and re 99.8 4.2E-20 9.2E-25 180.2 17.3 156 85-272 3-178 (429)
6 KOG2118|consensus 99.6 5.8E-17 1.3E-21 161.4 -0.9 165 81-276 10-176 (498)
7 PF01595 DUF21: Domain of unkn 95.5 1 2.2E-05 38.2 14.9 61 87-154 4-64 (183)
8 COG1253 TlyC Hemolysins and re 95.4 0.18 3.9E-06 49.7 11.4 49 97-154 20-68 (429)
9 TIGR03520 GldE gliding motilit 91.0 7.5 0.00016 38.3 14.3 21 131-154 39-59 (408)
10 PRK11573 hypothetical protein; 76.8 32 0.00069 34.0 11.2 20 132-154 37-56 (413)
11 COG4536 CorB Putative Mg2+ and 75.2 36 0.00078 34.0 10.8 141 87-251 8-154 (423)
12 TIGR00827 EIIC-GAT PTS system, 51.7 74 0.0016 31.9 8.2 70 199-273 139-208 (407)
13 PF03563 Bunya_G2: Bunyavirus 38.5 93 0.002 29.6 6.2 46 199-258 189-234 (285)
14 PF11131 PhrC_PhrF: Rap-phr ex 31.8 41 0.00088 22.6 2.0 25 92-118 6-30 (37)
15 CHL00038 psbL photosystem II p 21.1 1.3E+02 0.0028 20.3 2.9 18 85-102 19-36 (38)
16 PF11742 DUF3302: Protein of u 20.4 4.2E+02 0.0091 20.6 6.7 43 210-252 20-65 (78)
17 COG5336 Uncharacterized protei 20.1 3E+02 0.0064 23.0 5.4 23 174-196 48-70 (116)
No 1
>PF01595 DUF21: Domain of unknown function DUF21; InterPro: IPR002550 This transmembrane region has no known function. Many of the sequences in this family are annotated as hemolysins, however this is due to a similarity to Q54318 from SWISSPROT that does not contain this domain. This domain is found in the N terminus of the proteins adjacent to two intracellular CBS domains (IPR000644 from INTERPRO).
Probab=99.96 E-value=4.4e-27 Score=201.23 Aligned_cols=158 Identities=32% Similarity=0.459 Sum_probs=138.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHhcCCchhhhhhhhhhhhhhcchhhHHHhhhccchhhhhccchhhHh
Q psy4843 88 AIVIIVTCLGFSSLFSGLNLGLMSLNRTDLKIICNTGTEHERKYAKTIIPVREHGNYLLCSILLGTEHERKYAKTIIPVR 167 (277)
Q Consensus 88 ~iiiilllL~lSalFSg~E~AL~sL~~~~L~~l~~~G~~~e~k~Ak~l~~~~~~~~~~l~~~~~g~~~~~~~~~~~~~l~ 167 (277)
.+++++++++++++||++|.|++++++.++++++++|++ +++++.+ ++
T Consensus 2 ~l~~~~~ll~~~~~fs~~e~Al~~l~~~~l~~~~~~~~~----~a~~~~~----------------------------l~ 49 (183)
T PF01595_consen 2 LLLLALLLLLLSAFFSAAETALFSLSRSRLEELAEEGDK----RARRLLK----------------------------LL 49 (183)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHcCCH----HHHHHHH----------------------------HH
Confidence 345668889999999999999999999999999999884 7888888 88
Q ss_pred hchhHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHhhhchhhHHhhhhHHHHHHhhHHHHHH
Q psy4843 168 EHGNYLLCSILLGNVMVNSTFTILLDDI--------TSGLVAVIGSTLAIVIFGEISPQAVCSRHGLMIGAKTINVTKVV 239 (277)
Q Consensus 168 ~~~~~lL~tlllgn~lvn~~~~il~~~l--------~~~~ia~ii~tllilifGEIiPK~la~r~pe~ia~~~a~~v~~~ 239 (277)
+||+++++|+++||+++|++.+.+...+ .+.+++.+++++++++|||++||++|.+||++++.+.+|+++++
T Consensus 50 ~~~~~~l~t~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~lif~e~lPk~l~~~~~~~~~~~~a~~l~~~ 129 (183)
T PF01595_consen 50 ERPERLLSTILLGNTLSNVLAGVLATVLASNLFGPWWALLIAFLIITLLILIFGEILPKALARRHPEKIALRLAPLLRVL 129 (183)
T ss_pred hCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Confidence 9999999999999999999877544332 34567888899999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHhc---cc--CCCCCCHHHHHHHHhC
Q psy4843 240 MILTFPLAYPISKILDWILG---EE--IGNVYTRERLKELVKI 277 (277)
Q Consensus 240 ~~ll~P~~~~l~~l~~~ilg---~e--~~~~~teEELr~lV~~ 277 (277)
+++++|++++++++.+++++ .+ ++..+|||||++|++.
T Consensus 130 ~~l~~P~~~~l~~i~~~~~~~~~~~~~~~~~~s~eel~~lv~~ 172 (183)
T PF01595_consen 130 MILLYPLVWLLSFISNKILKLFGIENEEDPAVSEEELRSLVEE 172 (183)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCCCccccCCCCHHHHHHHHHh
Confidence 99999999999999997653 33 3568999999999973
No 2
>COG4536 CorB Putative Mg2+ and Co2+ transporter CorB [Inorganic ion transport and metabolism]
Probab=99.95 E-value=2.8e-27 Score=225.20 Aligned_cols=161 Identities=25% Similarity=0.392 Sum_probs=144.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHhcCCchhhhhhhhhhhhhhcchhhHHHhhhccchhhhhccch
Q psy4843 84 PFWLAIVIIVTCLGFSSLFSGLNLGLMSLNRTDLKIICNTGTEHERKYAKTIIPVREHGNYLLCSILLGTEHERKYAKTI 163 (277)
Q Consensus 84 ~~w~~iiiilllL~lSalFSg~E~AL~sL~~~~L~~l~~~G~~~e~k~Ak~l~~~~~~~~~~l~~~~~g~~~~~~~~~~~ 163 (277)
|.|.+++.+++|+++||||||.|+|++++||.+++.++++|++ .||++.+
T Consensus 1 ~~~~l~~~iiili~iSAfFSgSETal~a~nr~Rlr~la~~G~~----~Akrv~k-------------------------- 50 (423)
T COG4536 1 PTWILIIAIIILIIISAFFSGSETALTALNRYRLRHLAKQGNR----GAKRVEK-------------------------- 50 (423)
T ss_pred CcchHHHHHHHHHHHHHHhcccHHHHhhccHHHHHHHHHccch----hhHHHHH--------------------------
Confidence 3588889999999999999999999999999999999999995 8999999
Q ss_pred hhHhhchhHHHHHHHHHHHHHHHHHHHHHHH----HH---HHHHHHHHHHHHHHHHhhhchhhHHhhhhHHHHHHhhHHH
Q psy4843 164 IPVREHGNYLLCSILLGNVMVNSTFTILLDD----IT---SGLVAVIGSTLAIVIFGEISPQAVCSRHGLMIGAKTINVT 236 (277)
Q Consensus 164 ~~l~~~~~~lL~tlllgn~lvn~~~~il~~~----l~---~~~ia~ii~tllilifGEIiPK~la~r~pe~ia~~~a~~v 236 (277)
+.++|+++++++++||+++|++++.+... ++ +..+|..++|+++++|+|++||++|..|||+++...++++
T Consensus 51 --LL~k~drlig~iLIGNNLvNilasalaT~~~irl~Gd~GvaIAt~~mT~vilvFaEVlPKt~Aa~~perva~~~s~~l 128 (423)
T COG4536 51 --LLEKPDRLIGTILIGNNLVNILASALATILGIRLYGDAGVAIATGVLTFVILVFAEVLPKTIAALYPERVALPSSFIL 128 (423)
T ss_pred --HhcCchheeeeeeecccHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHhcchHHhhhChhhhhhhhhHHH
Confidence 99999999999999999999988766543 33 3468999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHH---hccc----CCCCCCHHHHHHHHh
Q psy4843 237 KVVMILTFPLAYPISKILDWI---LGEE----IGNVYTRERLKELVK 276 (277)
Q Consensus 237 ~~~~~ll~P~~~~l~~l~~~i---lg~e----~~~~~teEELr~lV~ 276 (277)
..+.++++|++|.++++.+.+ +|.+ .+...+.||||.+|+
T Consensus 129 ~~l~~l~~Plv~lln~it~~llrl~gi~~~~~~~~~~s~EElR~~v~ 175 (423)
T COG4536 129 AILVRLFGPLVWLLNAITRRLLRLLGINLDQAVSQLSSKEELRTAVN 175 (423)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCcCcccccccccCHHHHHHHHH
Confidence 999999999999999999865 5654 356789999999886
No 3
>TIGR03520 GldE gliding motility-associated protein GldE. Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldC is a protein linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. GldE was discovered because of its adjacency to GldD in F. johnsonii. Overexpression of GldE partially supresses the effects of a GldB point mutant suggesting that GldB and GldE interact. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Not all Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility and in fact some do not appear to express the gliding phenotype.
Probab=99.94 E-value=8.7e-26 Score=219.07 Aligned_cols=151 Identities=23% Similarity=0.385 Sum_probs=130.3
Q ss_pred HHHHHHHHHHHHHHHHHhccCHHHHHHHHhcCCchhhhhhhhhhhhhhcchhhHHHhhhccchhhhhccchhhHhhchhH
Q psy4843 93 VTCLGFSSLFSGLNLGLMSLNRTDLKIICNTGTEHERKYAKTIIPVREHGNYLLCSILLGTEHERKYAKTIIPVREHGNY 172 (277)
Q Consensus 93 lllL~lSalFSg~E~AL~sL~~~~L~~l~~~G~~~e~k~Ak~l~~~~~~~~~~l~~~~~g~~~~~~~~~~~~~l~~~~~~ 172 (277)
++|+++||||||+|+|++++++.+++.++++|++ +|+++++ ++++|++
T Consensus 2 ~~li~lsa~Fs~~E~Al~s~~~~~l~~l~~~~~~----~a~~~~~----------------------------l~~~~~~ 49 (408)
T TIGR03520 2 ILLLLLSALVSGSEVAFFSLSPTDLNDEEEDNSK----KEQIVIN----------------------------LLDRPKK 49 (408)
T ss_pred hHHHHHHHHHHHHHHHHHhcCHHHHHHHHHcCCH----HHHHHHH----------------------------HHhChHH
Confidence 4678899999999999999999999999999885 7888999 8889999
Q ss_pred HHHHHHHHHHHHHHHHHHHHH----HHH--------HHHHHHHHHHHHHHHHhhhchhhHHhhhhHHHHHHhhHHHHHHH
Q psy4843 173 LLCSILLGNVMVNSTFTILLD----DIT--------SGLVAVIGSTLAIVIFGEISPQAVCSRHGLMIGAKTINVTKVVM 240 (277)
Q Consensus 173 lL~tlllgn~lvn~~~~il~~----~l~--------~~~ia~ii~tllilifGEIiPK~la~r~pe~ia~~~a~~v~~~~ 240 (277)
+++|+++||+++|++++.+.. .++ +..++++++|+++++|||++||++|.+||++++...++++++++
T Consensus 50 ~L~tiligntl~ni~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~l~lvfgEiiPK~la~~~~~~ia~~~a~~l~~~~ 129 (408)
T TIGR03520 50 LLATILIANNFINIAIVLLFTSLSDNLFGSFNTELLRFLIEVVIVTFLILLFGEILPKVYANRNNLKFAKFMAYPINILD 129 (408)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHH
Confidence 999999999999987765432 222 22456778899999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHh---cccCCCCCCHHHHHHHHh
Q psy4843 241 ILTFPLAYPISKILDWIL---GEEIGNVYTRERLKELVK 276 (277)
Q Consensus 241 ~ll~P~~~~l~~l~~~il---g~e~~~~~teEELr~lV~ 276 (277)
++++|++|++++++++++ |.+. ..+|+|||+.+++
T Consensus 130 ~l~~P~~~~l~~~~~~i~~~~g~~~-~~~t~eEl~~lv~ 167 (408)
T TIGR03520 130 KVFSPISLPLRAITNFIHKKFGKQK-SNISVDQLSQALE 167 (408)
T ss_pred HHHHHHHHHHHHHHHHHHHHhCCCC-CCCCHHHHHHHHH
Confidence 999999999999988765 4432 4589999999986
No 4
>PRK11573 hypothetical protein; Provisional
Probab=99.93 E-value=5.4e-25 Score=214.01 Aligned_cols=149 Identities=23% Similarity=0.373 Sum_probs=129.3
Q ss_pred HHHHHHHHHHHHHHhccCHHHHHHHHhcCCchhhhhhhhhhhhhhcchhhHHHhhhccchhhhhccchhhHhhchhHHHH
Q psy4843 96 LGFSSLFSGLNLGLMSLNRTDLKIICNTGTEHERKYAKTIIPVREHGNYLLCSILLGTEHERKYAKTIIPVREHGNYLLC 175 (277)
Q Consensus 96 L~lSalFSg~E~AL~sL~~~~L~~l~~~G~~~e~k~Ak~l~~~~~~~~~~l~~~~~g~~~~~~~~~~~~~l~~~~~~lL~ 175 (277)
+++||||||+|+|++++++.+++.++++|++ +|+++++ ++++|+++++
T Consensus 2 i~lsafFs~~E~Al~s~~~~~l~~l~~~g~~----~a~~l~~----------------------------l~~~~~~~Ls 49 (413)
T PRK11573 2 VVISAYFSGSETGMMTLNRYRLRHMAKQGNR----SAKRVEK----------------------------LLRKPDRLIS 49 (413)
T ss_pred eehhhHHHHHHHHHHHcCHHHHHHHHHcCCh----hHHHHHH----------------------------HHhChHHHHH
Confidence 4689999999999999999999999999985 7888999 8888999999
Q ss_pred HHHHHHHHHHHHHHHHHH----HHH---HHHHHHHHHHHHHHHHhhhchhhHHhhhhHHHHHHhhHHHHHHHHHHHHHHH
Q psy4843 176 SILLGNVMVNSTFTILLD----DIT---SGLVAVIGSTLAIVIFGEISPQAVCSRHGLMIGAKTINVTKVVMILTFPLAY 248 (277)
Q Consensus 176 tlllgn~lvn~~~~il~~----~l~---~~~ia~ii~tllilifGEIiPK~la~r~pe~ia~~~a~~v~~~~~ll~P~~~ 248 (277)
|+++||+++|++++.+.. .++ +..++++++|+++++|||++||++|.+||++++...+++++++.++++|++|
T Consensus 50 tiligntl~~i~~~~l~~~~~~~~~~~~~~~ia~~i~t~l~lvfGEiiPK~la~~~~~~~a~~~a~~l~~~~~l~~P~v~ 129 (413)
T PRK11573 50 LVLIGNNLVNILASALGTIVGMRLYGDAGVAIATGVLTFVVLVFAEVLPKTIAALYPEKVAYPSSFLLAPLQILMMPLVW 129 (413)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhhhhHhHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999887665432 222 3467778899999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHH---hcccC----CCCCCHHHHHHHHh
Q psy4843 249 PISKILDWI---LGEEI----GNVYTRERLKELVK 276 (277)
Q Consensus 249 ~l~~l~~~i---lg~e~----~~~~teEELr~lV~ 276 (277)
+++++++.+ +|.+. ...+|+|||+.+++
T Consensus 130 ~l~~~~~~l~~l~g~~~~~~~~~~~s~eEl~~lv~ 164 (413)
T PRK11573 130 LLNTITRLLMRLMGIKTDIVVSGALSKEELRTIVH 164 (413)
T ss_pred HHHHHHHHHHHHhCCCccccCCCCCCHHHHHHHHH
Confidence 999988865 55542 24689999999986
No 5
>COG1253 TlyC Hemolysins and related proteins containing CBS domains [General function prediction only]
Probab=99.84 E-value=4.2e-20 Score=180.18 Aligned_cols=156 Identities=23% Similarity=0.345 Sum_probs=126.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHhcCCchhhhhhhhhhhhhhcchhhHHHhhhccchhhhhccchh
Q psy4843 85 FWLAIVIIVTCLGFSSLFSGLNLGLMSLNRTDLKIICNTGTEHERKYAKTIIPVREHGNYLLCSILLGTEHERKYAKTII 164 (277)
Q Consensus 85 ~w~~iiiilllL~lSalFSg~E~AL~sL~~~~L~~l~~~G~~~e~k~Ak~l~~~~~~~~~~l~~~~~g~~~~~~~~~~~~ 164 (277)
.+..++++++|+++|||||++|+|+++++|.+++.++++|++ .|+.+.+
T Consensus 3 ~~~~~~~i~~li~l~~ff~a~E~A~~s~~~~rl~~~~~~g~~----~a~~~~~--------------------------- 51 (429)
T COG1253 3 LILTLLLILLLIALSAFFSAAEFALVSLRRSRLEQLAEEGNK----RAKAALK--------------------------- 51 (429)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHccCH----hHHHHHH---------------------------
Confidence 345667778899999999999999999999999999999885 7888999
Q ss_pred hHhhchhHHHHHHHHHHHHHHHHHHHHHHHHH--------H-H----HHHHHHHHHHHHHHhhhchhhHHhhhhHHHHHH
Q psy4843 165 PVREHGNYLLCSILLGNVMVNSTFTILLDDIT--------S-G----LVAVIGSTLAIVIFGEISPQAVCSRHGLMIGAK 231 (277)
Q Consensus 165 ~l~~~~~~lL~tlllgn~lvn~~~~il~~~l~--------~-~----~ia~ii~tllilifGEIiPK~la~r~pe~ia~~ 231 (277)
+.++++.+++++++|+++++...+.+..... . . .++++++|.++++|||++||++|.++|++++..
T Consensus 52 -~~~~~~~~ls~~qigitl~~i~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~~t~l~~i~gEl~PK~~a~~~~e~va~~ 130 (429)
T COG1253 52 -LIERLNRYLSTVQLGITLVSLLLGAVGEPALAALLEPLLEALGLSAALSFAIITFLHVVFGELVPKSIAIRNPEKVALL 130 (429)
T ss_pred -HHhCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccchhHHHHHHHHhhhheeechhhhHHHHhCHHHHHHH
Confidence 7777777777777777777776554332111 1 1 122678899999999999999999999999999
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHhc---cc----CCCCCCHHHHH
Q psy4843 232 TINVTKVVMILTFPLAYPISKILDWILG---EE----IGNVYTRERLK 272 (277)
Q Consensus 232 ~a~~v~~~~~ll~P~~~~l~~l~~~ilg---~e----~~~~~teEELr 272 (277)
.++++++++++++|++|+++.+.+++++ .+ .+...+++|++
T Consensus 131 ~a~~~~~~~~l~~P~i~~~~~~a~~il~l~~~~~~~~~~~~~~~~~~~ 178 (429)
T COG1253 131 IAPPLRFFYRLLYPLIWLLNRIANAILRLFGVEPVEEEALTSTEEELE 178 (429)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCccccCccHHHHH
Confidence 9999999999999999999999998753 32 33356677765
No 6
>KOG2118|consensus
Probab=99.61 E-value=5.8e-17 Score=161.40 Aligned_cols=165 Identities=37% Similarity=0.627 Sum_probs=143.0
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHhcCCchhhh-hhhhhhhhhhcchhhHHHhhhccchhhhh
Q psy4843 81 KLIPFWLAIVIIVTCLGFSSLFSGLNLGLMSLNRTDLKIICNTGTEHERK-YAKTIIPVREHGNYLLCSILLGTEHERKY 159 (277)
Q Consensus 81 ~~~~~w~~iiiilllL~lSalFSg~E~AL~sL~~~~L~~l~~~G~~~e~k-~Ak~l~~~~~~~~~~l~~~~~g~~~~~~~ 159 (277)
..++.|..+.++ +..+++++||.++++|+++..+++.+...|+.++++ .+..+.+
T Consensus 10 ~~~~~~~~~~~~--l~~~~~~~sgltlglm~~~~~~l~~l~~s~~~~~~~~~~a~i~~---------------------- 65 (498)
T KOG2118|consen 10 SFMPVTFEIIII--LVLLLGLMSGLTLGLMSLTEVELEVLRKSGEVNEKKLIAAAIFP---------------------- 65 (498)
T ss_pred hhhhHHHHHHHH--HHHHHHHhhhcchhheechhhhhHHHhccCCccchhhhhhhhcc----------------------
Confidence 345555655544 888999999999999999999999999999877765 4555555
Q ss_pred ccchhhHhhchhHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHhhhchhhHHhhhhHHHHHHhhHHHHH
Q psy4843 160 AKTIIPVREHGNYLLCSILLGNVMVNST-FTILLDDITSGLVAVIGSTLAIVIFGEISPQAVCSRHGLMIGAKTINVTKV 238 (277)
Q Consensus 160 ~~~~~~l~~~~~~lL~tlllgn~lvn~~-~~il~~~l~~~~ia~ii~tllilifGEIiPK~la~r~pe~ia~~~a~~v~~ 238 (277)
++++.++++|+++++|.+.+.+ +.+.++.....+.++.+++..++.||||+||++|.+++.++++.+.|++++
T Consensus 66 ------~~k~~~~lL~tlll~n~~~~e~~L~i~~~~~~~~~~a~~is~~~i~~~geIipq~vc~~~gl~vga~~~~~~~i 139 (498)
T KOG2118|consen 66 ------VRKNLHDLLVTLLLCNSIATEAVLPFFLDAESGESGALRISVTEILIFGEIIPQSVCVKYGLAVGANLVPLVRI 139 (498)
T ss_pred ------cccccceeeehheehhhhccccccceeecccccccceEecceeeeeecccccchHHHhhhcccccccceehHHH
Confidence 9999999999999999999998 777777766678889999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHhcccCCCCCCHHHHHHHHh
Q psy4843 239 VMILTFPLAYPISKILDWILGEEIGNVYTRERLKELVK 276 (277)
Q Consensus 239 ~~~ll~P~~~~l~~l~~~ilg~e~~~~~teEELr~lV~ 276 (277)
++++++|+.|+++++ |+.+|...+..+.+.+++.++.
T Consensus 140 ~~~l~~PI~~p~~~~-d~~lg~~~~~~~~~~~l~~lv~ 176 (498)
T KOG2118|consen 140 LSFLCLPIAYPFSKL-DTALGLNLGEFLKRASLLALVQ 176 (498)
T ss_pred HHHHhhhhheehhhh-hhhhccccccchhhHHHHHHHH
Confidence 999999999999999 8888887777777777777664
No 7
>PF01595 DUF21: Domain of unknown function DUF21; InterPro: IPR002550 This transmembrane region has no known function. Many of the sequences in this family are annotated as hemolysins, however this is due to a similarity to Q54318 from SWISSPROT that does not contain this domain. This domain is found in the N terminus of the proteins adjacent to two intracellular CBS domains (IPR000644 from INTERPRO).
Probab=95.46 E-value=1 Score=38.24 Aligned_cols=61 Identities=18% Similarity=0.184 Sum_probs=36.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHhcCCchhhhhhhhhhhhhhcchhhHHHhhhccc
Q psy4843 87 LAIVIIVTCLGFSSLFSGLNLGLMSLNRTDLKIICNTGTEHERKYAKTIIPVREHGNYLLCSILLGTE 154 (277)
Q Consensus 87 ~~iiiilllL~lSalFSg~E~AL~sL~~~~L~~l~~~G~~~e~k~Ak~l~~~~~~~~~~l~~~~~g~~ 154 (277)
..+++++++-.+-+.+-.+=.++-..+-.++++-.+++.+ ...++.+ ||+++++|+++|+.
T Consensus 4 ~~~~~ll~~~~~fs~~e~Al~~l~~~~l~~~~~~~~~~a~----~~~~l~~---~~~~~l~t~~~~~~ 64 (183)
T PF01595_consen 4 LLALLLLLLSAFFSAAETALFSLSRSRLEELAEEGDKRAR----RLLKLLE---RPERLLSTILLGNT 64 (183)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHcCCHHHH----HHHHHHh---CchHHHHHHHHHHH
Confidence 3444444444444444444455555555555554444444 3445666 68999999999888
No 8
>COG1253 TlyC Hemolysins and related proteins containing CBS domains [General function prediction only]
Probab=95.36 E-value=0.18 Score=49.71 Aligned_cols=49 Identities=20% Similarity=0.125 Sum_probs=32.6
Q ss_pred HHHHHHHHHHHHHhccCHHHHHHHHhcCCchhhhhhhhhhhhhhcchhhHHHhhhccc
Q psy4843 97 GFSSLFSGLNLGLMSLNRTDLKIICNTGTEHERKYAKTIIPVREHGNYLLCSILLGTE 154 (277)
Q Consensus 97 ~lSalFSg~E~AL~sL~~~~L~~l~~~G~~~e~k~Ak~l~~~~~~~~~~l~~~~~g~~ 154 (277)
+.++-|+....- ..+-.++.+-...+.. .+.++.. +++.+|++.|+|++
T Consensus 20 f~a~E~A~~s~~--~~rl~~~~~~g~~~a~----~~~~~~~---~~~~~ls~~qigit 68 (429)
T COG1253 20 FSAAEFALVSLR--RSRLEQLAEEGNKRAK----AALKLIE---RLNRYLSTVQLGIT 68 (429)
T ss_pred HHHHHHHHHhcC--HHHHHHHHHccCHhHH----HHHHHHh---CchhHHHHHHHHHH
Confidence 334444444444 5566666665666666 4666777 68899999999999
No 9
>TIGR03520 GldE gliding motility-associated protein GldE. Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldC is a protein linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. GldE was discovered because of its adjacency to GldD in F. johnsonii. Overexpression of GldE partially supresses the effects of a GldB point mutant suggesting that GldB and GldE interact. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Not all Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility and in fact some do not appear to express the gliding phenotype.
Probab=90.96 E-value=7.5 Score=38.26 Aligned_cols=21 Identities=19% Similarity=0.368 Sum_probs=17.1
Q ss_pred hhhhhhhhhhcchhhHHHhhhccc
Q psy4843 131 YAKTIIPVREHGNYLLCSILLGTE 154 (277)
Q Consensus 131 ~Ak~l~~~~~~~~~~l~~~~~g~~ 154 (277)
.+.++.+ ||+++|+|+|+|++
T Consensus 39 ~~~~l~~---~~~~~L~tilignt 59 (408)
T TIGR03520 39 IVINLLD---RPKKLLATILIANN 59 (408)
T ss_pred HHHHHHh---ChHHHHHHHHHHHH
Confidence 3455666 78999999999999
No 10
>PRK11573 hypothetical protein; Provisional
Probab=76.80 E-value=32 Score=34.02 Aligned_cols=20 Identities=15% Similarity=0.471 Sum_probs=16.6
Q ss_pred hhhhhhhhhcchhhHHHhhhccc
Q psy4843 132 AKTIIPVREHGNYLLCSILLGTE 154 (277)
Q Consensus 132 Ak~l~~~~~~~~~~l~~~~~g~~ 154 (277)
+.++.+ ||+.+|+|+|+|++
T Consensus 37 l~~l~~---~~~~~Lstilignt 56 (413)
T PRK11573 37 VEKLLR---KPDRLISLVLIGNN 56 (413)
T ss_pred HHHHHh---ChHHHHHHHHHHHH
Confidence 445666 78999999999999
No 11
>COG4536 CorB Putative Mg2+ and Co2+ transporter CorB [Inorganic ion transport and metabolism]
Probab=75.19 E-value=36 Score=33.97 Aligned_cols=141 Identities=18% Similarity=0.185 Sum_probs=79.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHhcCCchhhhhhhhhhhhhhcchhhHHHhhhccchhhhhccchhhH
Q psy4843 87 LAIVIIVTCLGFSSLFSGLNLGLMSLNRTDLKIICNTGTEHERKYAKTIIPVREHGNYLLCSILLGTEHERKYAKTIIPV 166 (277)
Q Consensus 87 ~~iiiilllL~lSalFSg~E~AL~sL~~~~L~~l~~~G~~~e~k~Ak~l~~~~~~~~~~l~~~~~g~~~~~~~~~~~~~l 166 (277)
..++++++..+||+-=+|+. |+-+-+-.++++--++|-+ ...+++. +|+.+++++++|++ +
T Consensus 8 ~iiili~iSAfFSgSETal~-a~nr~Rlr~la~~G~~~Ak----rv~kLL~---k~drlig~iLIGNN-----------L 68 (423)
T COG4536 8 AIIILIIISAFFSGSETALT-ALNRYRLRHLAKQGNRGAK----RVEKLLE---KPDRLIGTILIGNN-----------L 68 (423)
T ss_pred HHHHHHHHHHHhcccHHHHh-hccHHHHHHHHHccchhhH----HHHHHhc---Cchheeeeeeeccc-----------H
Confidence 44555566678888877764 5577777888888888877 4666777 79999999999999 5
Q ss_pred hhchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHhhhchhhHHh--hhhHHHHHHhh-HHHHHHH
Q psy4843 167 REHGNYLLCSILLGNVMVNSTFTILLDDITSGLVAVIGSTLAIV---IFGEISPQAVCS--RHGLMIGAKTI-NVTKVVM 240 (277)
Q Consensus 167 ~~~~~~lL~tlllgn~lvn~~~~il~~~l~~~~ia~ii~tllil---ifGEIiPK~la~--r~pe~ia~~~a-~~v~~~~ 240 (277)
..--.-.++|.+. .-.++-.-..+..++.+++++.+.-+ ..+-..|..++. .++..+..+.. |+++++.
T Consensus 69 vNilasalaT~~~-----irl~Gd~GvaIAt~~mT~vilvFaEVlPKt~Aa~~perva~~~s~~l~~l~~l~~Plv~lln 143 (423)
T COG4536 69 VNILASALATILG-----IRLYGDAGVAIATGVLTFVILVFAEVLPKTIAALYPERVALPSSFILAILVRLFGPLVWLLN 143 (423)
T ss_pred HHHHHHHHHHHHH-----HHHhccchHHHHHHHHHHHHHHHHHhcchHHhhhChhhhhhhhhHHHHHHHHHHHHHHHHHH
Confidence 4422222222211 11111111122334555555444433 345567777764 45555544443 4444444
Q ss_pred HHHHHHHHHHH
Q psy4843 241 ILTFPLAYPIS 251 (277)
Q Consensus 241 ~ll~P~~~~l~ 251 (277)
++..-+...+.
T Consensus 144 ~it~~llrl~g 154 (423)
T COG4536 144 AITRRLLRLLG 154 (423)
T ss_pred HHHHHHHHHhC
Confidence 44444444443
No 12
>TIGR00827 EIIC-GAT PTS system, galactitol-specific IIC component. Bacterial PTS transporters transport and concomitantly phosphorylate their sugar substrates, and typically consist of multiple subunits or protein domains. The only characterized member of this family of PTS transporters is the E. coli galactitol transporter. Gat family PTS systems typically have 3 components: IIA, IIB and IIC. This family is specific for the IIC component of the PTS Gat family.
Probab=51.72 E-value=74 Score=31.88 Aligned_cols=70 Identities=13% Similarity=0.095 Sum_probs=44.9
Q ss_pred HHHHHHHHHHHHHHhhhchhhHHhhhhHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCCCCHHHHHH
Q psy4843 199 LVAVIGSTLAIVIFGEISPQAVCSRHGLMIGAKTINVTKVVMILTFPLAYPISKILDWILGEEIGNVYTRERLKE 273 (277)
Q Consensus 199 ~ia~ii~tllilifGEIiPK~la~r~pe~ia~~~a~~v~~~~~ll~P~~~~l~~l~~~ilg~e~~~~~teEELr~ 273 (277)
+++.++..++.+.++|..-+.+-..++.. ..-..+..+....|+.++++|+.|++=|.+. -..+.|.+++
T Consensus 139 i~~a~~~~i~~l~~aD~~a~~~q~~~glp----Gis~ph~~~~~~~pia~~~n~i~dkIPglnk-i~~d~~~i~k 208 (407)
T TIGR00827 139 LIGAVMHAAVALKVADWTAPMVSNFYELE----GISIPTGSTISYAPGIVLVDAIIEKIPGIKH-WNADADTIQR 208 (407)
T ss_pred HHHHHHHHHHHHHHHHHhcHHHHHhcCCC----CeeecchhhHhhhhHHHHHHHHHHhCcCccc-CCCCHHHHhh
Confidence 44555666777888888877765544433 2223355667788999999999999855421 1244555543
No 13
>PF03563 Bunya_G2: Bunyavirus glycoprotein G2; InterPro: IPR005168 Bunyavirus has three genomic segments: small (S), middle-sized (M), and large (L). The S segment encodes the nucleocapsid and a non-structural protein. The M segment codes for two glycoproteins, G1 and G2, and another non-structural protein (NSm). The L segment codes for an RNA polymerase. This entry represents the polyprotein region forming the G2 glycoprotein, which interacts with the IPR005167 from INTERPRO G1 glycoprotein [].
Probab=38.52 E-value=93 Score=29.63 Aligned_cols=46 Identities=22% Similarity=0.307 Sum_probs=34.1
Q ss_pred HHHHHHHHHHHHHHhhhchhhHHhhhhHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy4843 199 LVAVIGSTLAIVIFGEISPQAVCSRHGLMIGAKTINVTKVVMILTFPLAYPISKILDWIL 258 (277)
Q Consensus 199 ~ia~ii~tllilifGEIiPK~la~r~pe~ia~~~a~~v~~~~~ll~P~~~~l~~l~~~il 258 (277)
++-+++.+++++++.-|+-|+ ++.++++-+|+|+++.-.++-++-.
T Consensus 189 lIil~~~~~~~~i~~~Iltkt--------------Yi~YlliPiF~P~~~~Yg~~ynk~c 234 (285)
T PF03563_consen 189 LIILTCLTLIIFIFLIILTKT--------------YICYLLIPIFYPIAYLYGWLYNKSC 234 (285)
T ss_pred HHHHHHHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 344455567777777777776 4677788889999999999988743
No 14
>PF11131 PhrC_PhrF: Rap-phr extracellular signalling
Probab=31.76 E-value=41 Score=22.56 Aligned_cols=25 Identities=12% Similarity=0.425 Sum_probs=18.1
Q ss_pred HHHHHHHHHHHHHHHHHHhccCHHHHH
Q psy4843 92 IVTCLGFSSLFSGLNLGLMSLNRTDLK 118 (277)
Q Consensus 92 illlL~lSalFSg~E~AL~sL~~~~L~ 118 (277)
+++|+..++.|...+.| +.+..+.+
T Consensus 6 ~l~CLA~aavF~~a~va--~a~~~~f~ 30 (37)
T PF11131_consen 6 FLICLAAAAVFTAAGVA--NAPAHQFH 30 (37)
T ss_pred HHHHHHHHHHHHhhccc--CCchhhhh
Confidence 57799999999998874 44444443
No 15
>CHL00038 psbL photosystem II protein L
Probab=21.11 E-value=1.3e+02 Score=20.28 Aligned_cols=18 Identities=33% Similarity=0.748 Sum_probs=12.8
Q ss_pred HHHHHHHHHHHHHHHHHH
Q psy4843 85 FWLAIVIIVTCLGFSSLF 102 (277)
Q Consensus 85 ~w~~iiiilllL~lSalF 102 (277)
.|..++++++.+++|..|
T Consensus 19 y~GLLlifvl~vlfssyf 36 (38)
T CHL00038 19 YWGLLLIFVLAVLFSNYF 36 (38)
T ss_pred HHHHHHHHHHHHHHHHHh
Confidence 477777777777777665
No 16
>PF11742 DUF3302: Protein of unknown function (DUF3302); InterPro: IPR011223 This is a family of uncharacterised bacterial proteins, restricted to the Gammaproteobacteria.
Probab=20.37 E-value=4.2e+02 Score=20.61 Aligned_cols=43 Identities=9% Similarity=0.095 Sum_probs=29.4
Q ss_pred HHHhhhchhhHHh--hhhHHHHHHhhHHHHH-HHHHHHHHHHHHHH
Q psy4843 210 VIFGEISPQAVCS--RHGLMIGAKTINVTKV-VMILTFPLAYPISK 252 (277)
Q Consensus 210 lifGEIiPK~la~--r~pe~ia~~~a~~v~~-~~~ll~P~~~~l~~ 252 (277)
++.--.+|..++. +||..=+-..+..+-+ +...+.|+.++...
T Consensus 20 ~~~lh~lP~~iA~kr~Hpq~eaI~v~gwisLft~~~lWp~a~IwA~ 65 (78)
T PF11742_consen 20 FWKLHDLPGKIAHKRNHPQAEAIHVLGWISLFTLHVLWPFAWIWAY 65 (78)
T ss_pred HHHHHhhHHHHHHhcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444578999994 6887777777766664 45677888776544
No 17
>COG5336 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=20.12 E-value=3e+02 Score=22.97 Aligned_cols=23 Identities=26% Similarity=0.462 Sum_probs=18.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q psy4843 174 LCSILLGNVMVNSTFTILLDDIT 196 (277)
Q Consensus 174 L~tlllgn~lvn~~~~il~~~l~ 196 (277)
|++=+++.+++...+++++|+++
T Consensus 48 lssefIsGilVGa~iG~llD~~a 70 (116)
T COG5336 48 LSSEFISGILVGAGIGWLLDKFA 70 (116)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhc
Confidence 56666777788888899999876
Done!