Query psy4843
Match_columns 277
No_of_seqs 189 out of 1102
Neff 5.3
Searched_HMMs 29240
Date Fri Aug 16 19:09:40 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy4843.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/4843hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3arc_L Photosystem II reaction 16.4 1.4E+02 0.0047 19.1 3.1 18 85-102 18-35 (37)
2 1qle_D Cytochrome AA3, ccytoch 15.8 1.4E+02 0.0049 19.5 3.2 29 70-98 8-38 (43)
3 2jaf_A Halorhodopsin, HR; chro 11.6 7.7E+02 0.026 21.8 9.6 39 210-250 178-216 (274)
4 4a2n_B Isoprenylcysteine carbo 10.2 7.1E+02 0.024 20.5 7.4 11 166-176 123-133 (194)
5 3ug9_A Archaeal-type opsin 1, 10.0 9.8E+02 0.033 22.0 10.6 25 227-251 225-249 (333)
6 4f9l_D 20.1 anti-BTN3A1 antibo 7.2 3.5E+02 0.012 24.2 3.7 29 24-52 205-233 (259)
7 3bp6_A Programmed cell death p 6.8 5.1E+02 0.017 18.5 4.0 27 25-51 69-95 (117)
8 2bh9_A G6PD, glucose-6-phospha 6.5 5.6E+02 0.019 24.9 5.1 36 16-51 301-336 (489)
9 1m56_D Cytochrome C oxidase; m 6.3 6.5E+02 0.022 16.9 4.0 28 71-98 17-46 (51)
10 1dpg_A G6PD, glucose 6-phospha 6.2 4.5E+02 0.015 25.6 4.2 35 16-50 305-339 (485)
No 1
>3arc_L Photosystem II reaction center protein L; PSII, membrane-protein complex, transmembrane alpha-helix, E transport, photosynthesis; HET: OEX CLA PHO BCR PL9 SQD LMG UNL LMT HTG DGD LHG HEM; 1.90A {Thermosynechococcus vulcanus} PDB: 1s5l_L* 3a0b_L* 3a0h_L* 2axt_L* 3bz1_L* 3bz2_L* 3kzi_L* 3prq_L* 3prr_L*
Probab=16.45 E-value=1.4e+02 Score=19.10 Aligned_cols=18 Identities=39% Similarity=0.571 Sum_probs=12.8
Q ss_pred HHHHHHHHHHHHHHHHHH
Q psy4843 85 FWLAIVIIVTCLGFSSLF 102 (277)
Q Consensus 85 ~w~~iiiilllL~lSalF 102 (277)
.|..++++++.+++|..|
T Consensus 18 y~GLLlifvlavlFssyf 35 (37)
T 3arc_L 18 YLGLLLILVLALLFSSYF 35 (37)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhhhc
Confidence 477777777777777665
No 2
>1qle_D Cytochrome AA3, ccytochrome C oxidase; oxidoreductase/immune system, complex (oxidoreductase/antibody), electron transport; HET: HEA PC1; 3.0A {Paracoccus denitrificans} SCOP: f.23.8.1
Probab=15.83 E-value=1.4e+02 Score=19.54 Aligned_cols=29 Identities=17% Similarity=0.276 Sum_probs=18.2
Q ss_pred ccchhhhhhhhhhhHH--HHHHHHHHHHHHH
Q psy4843 70 QETFLQIEAYEKLIPF--WLAIVIIVTCLGF 98 (277)
Q Consensus 70 ~~~~~~~~~~~~~~~~--w~~iiiilllL~l 98 (277)
.|.-.+=.+|+..+.+ |..++++++++++
T Consensus 8 MD~~~hE~Ty~gFi~~~k~gt~~~~~~ll~m 38 (43)
T 1qle_D 8 MDIRHQQATFAGFIKGATWVSILSIAVLVFL 38 (43)
T ss_dssp SCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CChHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444455678887654 7777766666555
No 3
>2jaf_A Halorhodopsin, HR; chromophore, chloride pump, ION transport, membrane, chloride, receptor, ION pump, transport, sensory transduction; HET: BOG PLM RET; 1.7A {Halobacterium salinarium} PDB: 2jag_A* 1e12_A*
Probab=11.56 E-value=7.7e+02 Score=21.75 Aligned_cols=39 Identities=21% Similarity=0.353 Sum_probs=25.0
Q ss_pred HHHhhhchhhHHhhhhHHHHHHhhHHHHHHHHHHHHHHHHH
Q psy4843 210 VIFGEISPQAVCSRHGLMIGAKTINVTKVVMILTFPLAYPI 250 (277)
Q Consensus 210 lifGEIiPK~la~r~pe~ia~~~a~~v~~~~~ll~P~~~~l 250 (277)
.++.+. .|+...+ ..+-+.......-.+.+.+||++|.+
T Consensus 178 ~l~~~~-~~~a~~~-~v~~~f~~l~~~v~v~W~iYPI~w~l 216 (274)
T 2jaf_A 178 ALVTDW-AASASSA-GTAEIFDTLRVLVVVLWLGYPIVWAV 216 (274)
T ss_dssp HHHTHH-HHHHHHH-TCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHH-HHHhhhh-HHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 344444 5554444 55555566666667788889999977
No 4
>4a2n_B Isoprenylcysteine carboxyl methyltransferase; membrane protein, RAS and RHO gtpases signallin; HET: SAH PLM CDL; 3.40A {Methanosarcina acetivorans}
Probab=10.18 E-value=7.1e+02 Score=20.49 Aligned_cols=11 Identities=18% Similarity=-0.061 Sum_probs=7.2
Q ss_pred HhhchhHHHHH
Q psy4843 166 VREHGNYLLCS 176 (277)
Q Consensus 166 l~~~~~~lL~t 176 (277)
..+||+++-..
T Consensus 123 ~vRHP~Y~G~~ 133 (194)
T 4a2n_B 123 NIRHPMYAHLW 133 (194)
T ss_dssp TBSSHHHHHHH
T ss_pred hccCccHHHHH
Confidence 66788876443
No 5
>3ug9_A Archaeal-type opsin 1, archaeal-type opsin 2; microbialrhodopsin, seven-transmembrane, light-gated cation membrane protein; HET: RET OLA; 2.30A {Chlamydomonas reinhardtii}
Probab=9.99 E-value=9.8e+02 Score=21.97 Aligned_cols=25 Identities=12% Similarity=0.061 Sum_probs=18.4
Q ss_pred HHHHHhhHHHHHHHHHHHHHHHHHH
Q psy4843 227 MIGAKTINVTKVVMILTFPLAYPIS 251 (277)
Q Consensus 227 ~ia~~~a~~v~~~~~ll~P~~~~l~ 251 (277)
+-+.......-.+.+.+||++|.++
T Consensus 225 ~~af~~Lr~~vlV~WaIYPIvW~Lg 249 (333)
T 3ug9_A 225 RQVVTGMAWLFFVSWGMFPILFILG 249 (333)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHHHHHhhHHHeec
Confidence 4455555666677888999999886
No 6
>4f9l_D 20.1 anti-BTN3A1 antibody fragment; B7 superfamily, butyrophilin, CD277, immune system; HET: NAG; 3.14A {Mus musculus}
Probab=7.21 E-value=3.5e+02 Score=24.21 Aligned_cols=29 Identities=21% Similarity=0.417 Sum_probs=21.1
Q ss_pred cceeEEEEEeccccCCCceEEEEEeecCC
Q psy4843 24 ENTGLIKLSLPILGQSDVIYYMCTKENRT 52 (277)
Q Consensus 24 ~~~~~~~~~~~~~~~~~~~~~~c~~~~~~ 52 (277)
+.+-.+.+.+..+...|+..|.|++....
T Consensus 205 ~s~nt~yLqm~sL~~eDTAvYYCAr~~~~ 233 (259)
T 4f9l_D 205 KSSRTTYIQLSSLTSEDSAVYYCSREDDY 233 (259)
T ss_dssp TTTTEEEEEECSCCGGGCEEEEEEEECSS
T ss_pred ccccEEEEEECCCChHHCEEEEEEEeCCC
Confidence 33445667777777889988899987643
No 7
>3bp6_A Programmed cell death protein 1; PD-1, PD-L2, complex, costimulation, glycoprotein, immunoglo domain, membrane, transmembrane, receptor; 1.60A {Mus musculus} PDB: 3rnk_A 3sbw_A 3bp5_A 1npu_A 3rnq_A
Probab=6.77 E-value=5.1e+02 Score=18.54 Aligned_cols=27 Identities=15% Similarity=0.192 Sum_probs=21.3
Q ss_pred ceeEEEEEeccccCCCceEEEEEeecC
Q psy4843 25 NTGLIKLSLPILGQSDVIYYMCTKENR 51 (277)
Q Consensus 25 ~~~~~~~~~~~~~~~~~~~~~c~~~~~ 51 (277)
....+.+++.....+|+-.|.|.....
T Consensus 69 ~~~~~~L~I~~~~~~Dsg~Y~C~~~~~ 95 (117)
T 3bp6_A 69 NRHDFHMNILDTRRNDSGIYLCGAISL 95 (117)
T ss_dssp TSSEEEEEESSCCGGGCEEEEEEEEEC
T ss_pred CCCEEEEEECcCCHHHCEEEEEEEEec
Confidence 456678888888888999999997753
No 8
>2bh9_A G6PD, glucose-6-phosphate 1-dehydrogenase; oxidoreductase, oxidoreductase (CHOH(D)-NADP), carbohydrate metabolism, glucose metabolism; HET: NAP; 2.5A {Homo sapiens} PDB: 2bhl_A* 1qki_A*
Probab=6.52 E-value=5.6e+02 Score=24.93 Aligned_cols=36 Identities=8% Similarity=0.015 Sum_probs=29.9
Q ss_pred CCCCcccccceeEEEEEeccccCCCceEEEEEeecC
Q psy4843 16 PIDPETVTENTGLIKLSLPILGQSDVIYYMCTKENR 51 (277)
Q Consensus 16 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~ 51 (277)
.+++.|.|++=+-+++.+---.=.|+|||+.|-...
T Consensus 301 ~V~~~S~TeTfaA~kl~IdN~RW~GVPFylRtGKrL 336 (489)
T 2bh9_A 301 TVPRGSTTATFAAVVLYVENERWDGVPFILRCGKAL 336 (489)
T ss_dssp TSCTTCCCCSEEEEEEEBCSTTTTTCEEEEEEESSC
T ss_pred CCCCCCCCcceEEEEEEEcCcCcCCCCEEEEcCCCC
Confidence 356788899999999999887778999999886543
No 9
>1m56_D Cytochrome C oxidase; membrane protein, oxidoreductase; HET: HEA PEH; 2.30A {Rhodobacter sphaeroides} SCOP: f.23.8.1 PDB: 1m57_D*
Probab=6.30 E-value=6.5e+02 Score=16.86 Aligned_cols=28 Identities=18% Similarity=0.405 Sum_probs=17.4
Q ss_pred cchhhhhhhhhhhH--HHHHHHHHHHHHHH
Q psy4843 71 ETFLQIEAYEKLIP--FWLAIVIIVTCLGF 98 (277)
Q Consensus 71 ~~~~~~~~~~~~~~--~w~~iiiilllL~l 98 (277)
|.-.+=.+|+..+. -|..++++++++++
T Consensus 17 D~~~he~Ty~gFi~~~k~gt~~~~~~ll~l 46 (51)
T 1m56_D 17 DITQQEKTFAGFVRMVTWAAVVIVAALIFL 46 (51)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444567887765 47777766666555
No 10
>1dpg_A G6PD, glucose 6-phosphate dehydrogenase; oxidoreductase, NADP/NAD, glucose metabolism, oxidoreductase (CHOH(D) - NAD(P)); 2.00A {Leuconostoc mesenteroides} SCOP: c.2.1.3 d.81.1.5 PDB: 1e7y_A* 1e7m_A* 1h93_A 1h94_A* 1h9a_A* 1e77_A* 1h9b_A 2dpg_A*
Probab=6.24 E-value=4.5e+02 Score=25.62 Aligned_cols=35 Identities=9% Similarity=0.124 Sum_probs=29.0
Q ss_pred CCCCcccccceeEEEEEeccccCCCceEEEEEeec
Q psy4843 16 PIDPETVTENTGLIKLSLPILGQSDVIYYMCTKEN 50 (277)
Q Consensus 16 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~ 50 (277)
.+++.|.|++=+-+++.+---.=.|+|||+.|-..
T Consensus 305 gV~~~S~TeTfaA~kl~IdN~RW~GVPFyLRtGKr 339 (485)
T 1dpg_A 305 DVPADSKNNTFIAGELQFDLPRWEGVPFYVRSGKR 339 (485)
T ss_dssp TCCTTCCCCSEEEEEECBCSGGGTTCCEEEEEESS
T ss_pred CCCCCCCCCceEEEEEEEcCCccCCccEEEEecCC
Confidence 35778889999999999987777899999988554
Done!