Query psy4843
Match_columns 277
No_of_seqs 189 out of 1102
Neff 5.3
Searched_HMMs 13730
Date Fri Aug 16 19:09:50 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy4843.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/4843hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1m56d_ f.23.8.1 (D:) Bacteria 20.0 62 0.0045 19.8 3.7 29 71-99 8-38 (42)
2 d1qled_ f.23.8.1 (D:) Bacteria 17.4 60 0.0043 20.0 3.2 29 71-99 9-39 (43)
3 d2axtl1 f.23.31.1 (L:1-37) Pho 17.1 62 0.0045 19.1 3.1 18 85-102 18-35 (37)
4 d1rihh1 b.1.1.1 (H:1-113) Immu 16.6 65 0.0048 23.8 4.0 26 26-51 76-101 (125)
5 d1pg7x1 b.1.1.1 (X:1-113) Immu 16.1 73 0.0053 23.3 4.2 26 26-51 76-101 (120)
6 d1i8lc_ b.1.1.1 (C:) Immunorec 14.3 75 0.0055 22.0 3.7 27 26-52 72-98 (118)
7 d1q9rb1 b.1.1.1 (B:1-111) Immu 14.1 82 0.0059 23.2 4.0 25 27-51 79-103 (122)
8 d1ai1h1 b.1.1.1 (H:1-112) Immu 12.5 80 0.0058 23.1 3.5 26 26-51 77-102 (120)
9 d1h2sa_ f.13.1.1 (A:) Sensory 12.0 3.1E+02 0.022 21.2 10.4 40 211-251 141-181 (225)
10 d2bnqd1 b.1.1.1 (D:2-114) T-ce 11.8 82 0.006 21.6 3.2 28 25-52 68-95 (113)
No 1
>d1m56d_ f.23.8.1 (D:) Bacterial aa3 type cytochrome c oxidase subunit IV {Rhodobacter sphaeroides [TaxId: 1063]}
Probab=20.01 E-value=62 Score=19.81 Aligned_cols=29 Identities=17% Similarity=0.403 Sum_probs=18.4
Q ss_pred cchhhhhhhhhhhH--HHHHHHHHHHHHHHH
Q psy4843 71 ETFLQIEAYEKLIP--FWLAIVIIVTCLGFS 99 (277)
Q Consensus 71 ~~~~~~~~~~~~~~--~w~~iiiilllL~lS 99 (277)
|.-.|=.+++..+. .|..+++++++++++
T Consensus 8 Di~vQEKTF~gFik~~t~~~i~~i~~liflA 38 (42)
T d1m56d_ 8 DITQQEKTFAGFVRMVTWAAVVIVAALIFLA 38 (42)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44445566777764 477777776666653
No 2
>d1qled_ f.23.8.1 (D:) Bacterial aa3 type cytochrome c oxidase subunit IV {Paracoccus denitrificans [TaxId: 266]}
Probab=17.37 E-value=60 Score=19.98 Aligned_cols=29 Identities=17% Similarity=0.335 Sum_probs=18.9
Q ss_pred cchhhhhhhhhhhH--HHHHHHHHHHHHHHH
Q psy4843 71 ETFLQIEAYEKLIP--FWLAIVIIVTCLGFS 99 (277)
Q Consensus 71 ~~~~~~~~~~~~~~--~w~~iiiilllL~lS 99 (277)
|--.|=.+++..+. .|..+++++++++++
T Consensus 9 Di~vQEkTF~gFi~~~t~~~i~~i~~liflA 39 (43)
T d1qled_ 9 DIRHQQATFAGFIKGATWVSILSIAVLVFLA 39 (43)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44455667777765 477777776666653
No 3
>d2axtl1 f.23.31.1 (L:1-37) Photosystem II reaction center protein L, PsbL {Thermosynechococcus elongatus [TaxId: 146786]}
Probab=17.05 E-value=62 Score=19.10 Aligned_cols=18 Identities=39% Similarity=0.571 Sum_probs=11.6
Q ss_pred HHHHHHHHHHHHHHHHHH
Q psy4843 85 FWLAIVIIVTCLGFSSLF 102 (277)
Q Consensus 85 ~w~~iiiilllL~lSalF 102 (277)
.|..++++++.+++|..|
T Consensus 18 y~GlLlifvl~vLFssYf 35 (37)
T d2axtl1 18 YLGLLLILVLALLFSSYF 35 (37)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHh
Confidence 466666666666666655
No 4
>d1rihh1 b.1.1.1 (H:1-113) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]}
Probab=16.65 E-value=65 Score=23.77 Aligned_cols=26 Identities=23% Similarity=0.383 Sum_probs=18.6
Q ss_pred eeEEEEEeccccCCCceEEEEEeecC
Q psy4843 26 TGLIKLSLPILGQSDVIYYMCTKENR 51 (277)
Q Consensus 26 ~~~~~~~~~~~~~~~~~~~~c~~~~~ 51 (277)
+-.+.+.+..+...|+.-|.|++...
T Consensus 76 ~n~vyL~l~sL~~eDtAvYYCAR~~~ 101 (125)
T d1rihh1 76 SNTAFMYLNSLTSEDSAVYYCARESP 101 (125)
T ss_dssp TTEEEEEECSCCGGGCEEEEEEEECC
T ss_pred cceEeeeeeccCcccceEEEEeeeCC
Confidence 44466666667777888888998753
No 5
>d1pg7x1 b.1.1.1 (X:1-113) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]}
Probab=16.11 E-value=73 Score=23.30 Aligned_cols=26 Identities=23% Similarity=0.383 Sum_probs=17.9
Q ss_pred eeEEEEEeccccCCCceEEEEEeecC
Q psy4843 26 TGLIKLSLPILGQSDVIYYMCTKENR 51 (277)
Q Consensus 26 ~~~~~~~~~~~~~~~~~~~~c~~~~~ 51 (277)
+..+.+.+..+...|+.-|.|++...
T Consensus 76 ~n~v~L~i~~l~~eDtA~YYCAr~~~ 101 (120)
T d1pg7x1 76 STTAYIELVRLTSNDSAVYYCAREDF 101 (120)
T ss_dssp TTEEEEEECSCCGGGCEEEEEEEECC
T ss_pred cceEEccccccCCCcceEEEeeecCC
Confidence 33455666666677888888998754
No 6
>d1i8lc_ b.1.1.1 (C:) Immunoreceptor CTLA-4 (CD152), N-terminal fragment {Human (Homo sapiens) [TaxId: 9606]}
Probab=14.33 E-value=75 Score=21.98 Aligned_cols=27 Identities=22% Similarity=0.298 Sum_probs=20.1
Q ss_pred eeEEEEEeccccCCCceEEEEEeecCC
Q psy4843 26 TGLIKLSLPILGQSDVIYYMCTKENRT 52 (277)
Q Consensus 26 ~~~~~~~~~~~~~~~~~~~~c~~~~~~ 52 (277)
...+.+++..+..+|.-.|.|+.+...
T Consensus 72 ~~~~~L~I~~l~~~Dsa~YyCa~~~~~ 98 (118)
T d1i8lc_ 72 GNQVNLTIQGLRAMDTGLYICKVELMY 98 (118)
T ss_dssp SSEEEEEECSCCGGGCEEEEEEEEEEE
T ss_pred CCEEEEEeeccccCCCEEEEEeEeccc
Confidence 335667777778889999999887643
No 7
>d1q9rb1 b.1.1.1 (B:1-111) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 1 [TaxId: 10090]}
Probab=14.10 E-value=82 Score=23.20 Aligned_cols=25 Identities=20% Similarity=0.526 Sum_probs=17.9
Q ss_pred eEEEEEeccccCCCceEEEEEeecC
Q psy4843 27 GLIKLSLPILGQSDVIYYMCTKENR 51 (277)
Q Consensus 27 ~~~~~~~~~~~~~~~~~~~c~~~~~ 51 (277)
-.+.+.+..+...|+.-|.|++...
T Consensus 79 nt~~L~~~sL~~eDTAvYYCar~~~ 103 (122)
T d1q9rb1 79 SILYLQMNTLRAEDSATYYCARDHD 103 (122)
T ss_dssp TEEEEEECSCCGGGCEEEEEEECCC
T ss_pred ceeccceeeeccCcceEEEEEecCC
Confidence 3455666667777888888998654
No 8
>d1ai1h1 b.1.1.1 (H:1-112) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 7.3 [TaxId: 10090]}
Probab=12.48 E-value=80 Score=23.09 Aligned_cols=26 Identities=23% Similarity=0.436 Sum_probs=19.2
Q ss_pred eeEEEEEeccccCCCceEEEEEeecC
Q psy4843 26 TGLIKLSLPILGQSDVIYYMCTKENR 51 (277)
Q Consensus 26 ~~~~~~~~~~~~~~~~~~~~c~~~~~ 51 (277)
.-.+.+.+..+..+|+.-|.|++...
T Consensus 77 ~n~~~L~~~sL~~eDtAvYYCAr~~~ 102 (120)
T d1ai1h1 77 LNKFFIQLISVTNEDTAMYYCSRENH 102 (120)
T ss_dssp TTEEEEEESSCCGGGCEEEEEEEEET
T ss_pred cceeecceeeeeccceeEEEEEecCC
Confidence 33566777777778888888998654
No 9
>d1h2sa_ f.13.1.1 (A:) Sensory rhodopsin II {Archaeon Natronobacterium pharaonis [TaxId: 2257]}
Probab=12.05 E-value=3.1e+02 Score=21.22 Aligned_cols=40 Identities=13% Similarity=0.313 Sum_probs=25.6
Q ss_pred HHhhhchhhHHhh-hhHHHHHHhhHHHHHHHHHHHHHHHHHH
Q psy4843 211 IFGEISPQAVCSR-HGLMIGAKTINVTKVVMILTFPLAYPIS 251 (277)
Q Consensus 211 ifGEIiPK~la~r-~pe~ia~~~a~~v~~~~~ll~P~~~~l~ 251 (277)
++++ ..|+...+ .+.+-+.........+.+.+||+.|.++
T Consensus 141 l~~~-~~~~a~~~~~~~~~~~~~l~~~~~v~W~iYPi~y~l~ 181 (225)
T d1h2sa_ 141 LVGP-MTESASQRSSGIKSLYVRLRNLTVILWAIYPFIWLLG 181 (225)
T ss_dssp HHTH-HHHHHTTSCHHHHHHHHHHHHHHHHHHTTHHHHHHHS
T ss_pred HHHH-HHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 3443 35554433 3345556666777788899999998874
No 10
>d2bnqd1 b.1.1.1 (D:2-114) T-cell antigen receptor {Human (Homo sapiens), alpha-chain [TaxId: 9606]}
Probab=11.78 E-value=82 Score=21.56 Aligned_cols=28 Identities=18% Similarity=0.351 Sum_probs=21.3
Q ss_pred ceeEEEEEeccccCCCceEEEEEeecCC
Q psy4843 25 NTGLIKLSLPILGQSDVIYYMCTKENRT 52 (277)
Q Consensus 25 ~~~~~~~~~~~~~~~~~~~~~c~~~~~~ 52 (277)
.+..+.+++..+..+|+-.|.|+.....
T Consensus 68 ~~~~~~L~i~~~~~~Dsg~YyCa~~~~~ 95 (113)
T d2bnqd1 68 SSGRSTLYIAASQPGDSATYLCAVRPTS 95 (113)
T ss_dssp TTTEEEEEESSCCGGGCEEEEEEEEESS
T ss_pred CCCEEEeeeecCCCCCCcEEeEeEecCC
Confidence 3445678888888889999999987653
Done!