RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy4843
         (277 letters)



>d1nt4a_ c.60.1.2 (A:) Glucose-1-phosphatase {Escherichia coli
          [TaxId: 562]}
          Length = 391

 Score = 28.5 bits (62), Expect = 1.1
 Identities = 8/52 (15%), Positives = 13/52 (25%), Gaps = 10/52 (19%)

Query: 5  YILGRYLRTAYPIDPETVTENTGLIKLSLPILGQSDVIYYMCTKENRTLGTA 56
            +G Y+R                  +          +Y       RT+ TA
Sbjct: 58 VYMGHYMREWLA----------EQGMVKSGECPPPYTVYAYANSLQRTVATA 99


>d1e3ha3 d.14.1.4 (A:346-482) Polynucleotide phosphorylase/guanosine
           pentaphosphate synthase (PNPase/GPSI), domains 1 and 4
           {Streptomyces antibioticus [TaxId: 1890]}
          Length = 137

 Score = 25.9 bits (56), Expect = 3.5
 Identities = 14/113 (12%), Positives = 33/113 (29%), Gaps = 8/113 (7%)

Query: 109 LMSLNRTDLKIICNTGTEHERKYAKTIIPV-REHGNYLLCSILLGTEHERKYAKTIIPVR 167
           L     T +  +         +   T+ PV R+   +             +         
Sbjct: 21  LFERGETQILGVTTLNMLRMEQQLDTLSPVTRKRYMHNYNFPPYSVGETGRVGSPKRREI 80

Query: 168 EHG-------NYLLCSILLGNVMVNSTFTILLDDITSGLVAVIGSTLAIVIFG 213
            HG         +L +       +      L  + ++ + +V  ST++++  G
Sbjct: 81  GHGALAERAIVPVLPTREEFPYAIRQVSEALGSNGSTSMGSVCASTMSLLNAG 133


>d2oa4a1 a.4.12.3 (A:1-93) Uncharacterized protein SPO1678
           {Silicibacter pomeroyi [TaxId: 89184]}
          Length = 93

 Score = 24.7 bits (54), Expect = 5.5
 Identities = 6/17 (35%), Positives = 9/17 (52%)

Query: 210 VIFGEISPQAVCSRHGL 226
           VI+G I+       +GL
Sbjct: 46  VIYGLITLAEAKQTYGL 62


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.323    0.140    0.415 

Gapped
Lambda     K      H
   0.267   0.0677    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,026,207
Number of extensions: 45770
Number of successful extensions: 72
Number of sequences better than 10.0: 1
Number of HSP's gapped: 72
Number of HSP's successfully gapped: 3
Length of query: 277
Length of database: 2,407,596
Length adjustment: 84
Effective length of query: 193
Effective length of database: 1,254,276
Effective search space: 242075268
Effective search space used: 242075268
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 52 (23.9 bits)