BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy4844
(254 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q9Y2L1|RRP44_HUMAN Exosome complex exonuclease RRP44 OS=Homo sapiens GN=DIS3 PE=1 SV=2
Length = 958
Score = 206 bits (523), Expect = 2e-52, Method: Compositional matrix adjust.
Identities = 105/242 (43%), Positives = 152/242 (62%), Gaps = 14/242 (5%)
Query: 13 VMKIVREHYLRDDLSCGSELCLACDTKEAILDKIPTSSKAILDKIPTSSSKKYMEPHYLL 72
VMKIVREHYLRDD+ CG+ C AC A+ + +S +PHYLL
Sbjct: 16 VMKIVREHYLRDDIGCGAPGCAACGGAH--------EGPALEPQPQDPASSVCPQPHYLL 67
Query: 73 LDTNIILEQIDILEEPTLCNVILVQTILQEVKHRSSSVYKRLKDLISNPSRKFYVFVNEH 132
DTN++L QID+LE+P + NVI++QT+LQEV++RS+ VYKR++D+ +N + FY F NEH
Sbjct: 68 PDTNVLLHQIDVLEDPAIRNVIVLQTVLQEVRNRSAPVYKRIRDVTNNQEKHFYTFTNEH 127
Query: 133 HYETYVEQEPGESVNDRNDRALRRVATWYEEHL-----ESAVRVILLSEDVRNRDLATQS 187
H ETYVEQE GE+ NDRNDRA+R A WY EHL ++ ++VI ++ D RN++ A +
Sbjct: 128 HRETYVEQEQGENANDRNDRAIRVAAKWYNEHLKKMSADNQLQVIFITNDRRNKEKAIEE 187
Query: 188 GLLTSSIEGYISTLSNGEPLLDKLSK-KEAVVETSVKDSLYPLHATPSEIHAGIKNQSLL 246
G+ + E Y+ +L+ L+D+L+ E E ++ H S++ GIK+ + L
Sbjct: 188 GIPAFTCEEYVKSLTANPELIDRLACLSEEGNEIESGKIIFSEHLPLSKLQQGIKSGTYL 247
Query: 247 QG 248
QG
Sbjct: 248 QG 249
>sp|Q9CSH3|RRP44_MOUSE Exosome complex exonuclease RRP44 OS=Mus musculus GN=Dis3 PE=2 SV=4
Length = 958
Score = 203 bits (517), Expect = 8e-52, Method: Compositional matrix adjust.
Identities = 104/242 (42%), Positives = 153/242 (63%), Gaps = 14/242 (5%)
Query: 13 VMKIVREHYLRDDLSCGSELCLACDTKEAILDKIPTSSKAILDKIPTSSSKKYMEPHYLL 72
V+KIVREHYLRDD+ CG+ C AC A A+ + +S PHYLL
Sbjct: 16 VVKIVREHYLRDDIGCGAPACSACGGAHA--------GPALELQPRDQASSLCPWPHYLL 67
Query: 73 LDTNIILEQIDILEEPTLCNVILVQTILQEVKHRSSSVYKRLKDLISNPSRKFYVFVNEH 132
DTN++L QID+LE P + NVI++QT++QEV++RS+ +YKR++D+ +N + FY F NEH
Sbjct: 68 PDTNVLLHQIDVLEHPAIRNVIVLQTVMQEVRNRSAPIYKRIRDVTNNQEKHFYTFTNEH 127
Query: 133 HYETYVEQEPGESVNDRNDRALRRVATWYEEHL-----ESAVRVILLSEDVRNRDLATQS 187
H ETY+EQE GE+ NDRNDRA+R A WY EHL +S ++VIL++ D +N++ A Q
Sbjct: 128 HKETYIEQEQGENANDRNDRAIRVAAKWYNEHLKRVAADSQLQVILITNDRKNKEKAVQE 187
Query: 188 GLLTSSIEGYISTLSNGEPLLDKLSK-KEAVVETSVKDSLYPLHATPSEIHAGIKNQSLL 246
G+ + E Y+ +L+ L+D+L+ + + E ++ H S++ GIK+ S L
Sbjct: 188 GIPAFTCEEYVKSLTANPELIDRLAYLSDEMNEIESGKIIFSEHLPLSKLQQGIKSGSYL 247
Query: 247 QG 248
QG
Sbjct: 248 QG 249
>sp|Q08162|RRP44_YEAST Exosome complex exonuclease DIS3 OS=Saccharomyces cerevisiae
(strain ATCC 204508 / S288c) GN=DIS3 PE=1 SV=1
Length = 1001
Score = 152 bits (385), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 93/254 (36%), Positives = 145/254 (57%), Gaps = 13/254 (5%)
Query: 6 VQSSVWLVMKIVREHYLRDDLSCGSELCLACDTKEAILDKIPTSSKAILDKIPTSSSKKY 65
V+S KIVREHYLR D+ C S C C + + D K IL P S
Sbjct: 25 VRSRNGGATKIVREHYLRSDIPCLSRSCTKC-PQIVVPDAQNELPKFILSDSPLELSAP- 82
Query: 66 MEPHYLLLDTNIILEQIDILEEPT-LCNVILVQTILQEVKHRSSSVYKRLKDLI--SNPS 122
+ HY++LDTN++L+ ID+LE P +VI+ Q +L EV+++S VY RL+ L S+
Sbjct: 83 IGKHYVVLDTNVVLQAIDLLENPNCFFDVIVPQIVLDEVRNKSYPVYTRLRTLCRDSDDH 142
Query: 123 RKFYVFVNEHHYETYVEQEPGESVNDRNDRALRRVATWYEEHLES-AVRVILLSEDVRNR 181
++F VF NE T+VE+ P E++NDRNDRA+R+ WY EHL+ + V+L++ D NR
Sbjct: 143 KRFIVFHNEFSEHTFVERLPNETINDRNDRAIRKTCQWYSEHLKPYDINVVLVTNDRLNR 202
Query: 182 DLAT---QSGLLTSSIEGYISTLSNGEPLLDKLSKKEAVVETSVKDSL----YPLHATPS 234
+ AT +S ++T S+ YI L N + + D + + ++ + +D+ +P + + +
Sbjct: 203 EAATKEVESNIITKSLVQYIELLPNADDIRDSIPQMDSFDKDLERDTFSDFTFPEYYSTA 262
Query: 235 EIHAGIKNQSLLQG 248
+ G+KN L QG
Sbjct: 263 RVMGGLKNGVLYQG 276
>sp|P37202|DIS3_SCHPO Exosome complex exonuclease dis3 OS=Schizosaccharomyces pombe
(strain 972 / ATCC 24843) GN=dis3 PE=1 SV=1
Length = 970
Score = 150 bits (379), Expect = 8e-36, Method: Compositional matrix adjust.
Identities = 92/256 (35%), Positives = 148/256 (57%), Gaps = 20/256 (7%)
Query: 6 VQSSVWLVMKIVREHYLRDDLSCGSELCLACDTKEAILDKIPTSSKA-ILDKIPTSSSKK 64
V+++ V K+VRE YLR+D+ C S C C +K +P S+ +L+ I S
Sbjct: 23 VRATRGKVQKVVREQYLRNDIPCQSRACPLCRSK------LPKDSRGNVLEPI-LSEKPM 75
Query: 65 YMEP---HYLLLDTNIILEQIDILEEPT-LCNVILVQTILQEVKHRSSSVYKRLKDLISN 120
++E HYL+ D+NI ID LE P +VI++QT+ E+ +S +Y R+K L
Sbjct: 76 FLEKFGHHYLIPDSNIFYHCIDALEHPNNFFDVIILQTVFSEISSKSIPLYNRMKRLCQE 135
Query: 121 PSRKFYVFVNEHHYETYVEQEPGESVNDRNDRALRRVATWYEEHLES-AVRVILLSEDVR 179
+++F F NE +T+VE+ ES NDRNDRA+R A+W+ HL S ++++LL++D
Sbjct: 136 KTKRFTPFSNEFFVDTFVERLDDESANDRNDRAIRNAASWFASHLASLGIKIVLLTDDRE 195
Query: 180 NRDLATQSGLLTSSIEGYISTLSNGEPLLDKLSK-KEAV-----VETSVKDSLYPLHATP 233
N LA + G+ S+++ Y+ L + E LLD +S +A+ VE+ K+ +Y LH +
Sbjct: 196 NARLAAEQGIQVSTLKDYVQYLPDSEILLDMVSAIADAIASKEQVESGTKN-VYELHWSM 254
Query: 234 SEIHAGIKNQSLLQGM 249
S + A IKN + +G+
Sbjct: 255 SRLLACIKNGEVHKGL 270
>sp|A2RV18|DI3L1_DANRE DIS3-like exonuclease 1 OS=Danio rerio GN=dis3l PE=2 SV=1
Length = 1057
Score = 99.4 bits (246), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 69/247 (27%), Positives = 113/247 (45%), Gaps = 34/247 (13%)
Query: 14 MKIVREHYLRDDLSCGSELCLA-CDTKEAILDKIPTSSKAILDKIPTSSSKKYMEPHYLL 72
+++VREHY+R+ + CGS LC A C +L + T HY++
Sbjct: 18 VRVVREHYMREQVPCGSSLCQADCQNVGKVLSRDVT--------------------HYVV 57
Query: 73 LDTNIILEQIDILEEPTLCNVILVQTILQEVKH-RSSSVYKRLKDLISNPSRKFYVFVNE 131
D ++ + ++ILE L ++L QT Q V+H R Y RL+ L+ +P +F NE
Sbjct: 58 PDVGVVRDFLEILELRELQGIVLTQTAYQTVQHTRGRRHYNRLRSLLKDPRHDCVLFANE 117
Query: 132 HHYETYVEQEPGESVNDRNDRALRRVATWYEEHLESAVRVILLSEDVRNRDL-----ATQ 186
+Y +E GES + + R + A WY HL V++++ED RD A+
Sbjct: 118 FQQYSYCPREKGESQDKWHTRNVYNAAVWYYNHLAGLQPVVMITED---RDAISEFSASN 174
Query: 187 SGLLTSSIE----GYISTLSNGEPLLDKLSKKEAVVETSVKDSLYPLHATPSEIHAGIKN 242
SG+ S + G+ L L +++ E + +Y H + AGIK+
Sbjct: 175 SGVFVISTQEYLLGFWPDLQAAHDLYHSIAQTLQERENDGAEKVYTEHLPAEVLEAGIKS 234
Query: 243 QSLLQGM 249
+QG+
Sbjct: 235 GRYIQGI 241
>sp|Q0P4R5|DI3L1_XENTR DIS3-like exonuclease 1 OS=Xenopus tropicalis GN=dis3l PE=2 SV=2
Length = 1039
Score = 97.1 bits (240), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 71/246 (28%), Positives = 115/246 (46%), Gaps = 30/246 (12%)
Query: 14 MKIVREHYLRDDLSCGSELCLACDTKEAILDKIPTSSKAILDKIPTSSSKKYMEPHYLLL 73
++ VREHYLR+D+ CGS LCL C P K + + + HY++
Sbjct: 17 VRAVREHYLREDVRCGSALCLTC----------PRDGKLLSEDLT----------HYVVP 56
Query: 74 DTNIILEQIDILEEPTLCNVILVQTILQEVKH-RSSSVYKRLKDLISNPSRKFYVFVNEH 132
D I+ + +++LE P L +I++QT Q V+H R YKRL L+ + +F NE
Sbjct: 57 DCQILQDYLEVLEFPELRGIIIMQTACQSVQHQRGRRQYKRLCSLLRDTRHDCILFSNEF 116
Query: 133 HYETYVEQEPGESVNDRNDRALRRVATWYEEHLESAVRVILLSED---VRNRDLATQSGL 189
Y+ +E GES R + WY +H + + V++++ED +R + TQ
Sbjct: 117 QNHAYLPREMGESALAWQTRCIYNSCVWYYQHCQKKIPVVMVTEDKSVIRQYNTETQEVY 176
Query: 190 LTSS---IEGYISTLSNGEPLLDKL--SKKEAVVETSVKDSL-YPLHATPSEIHAGIKNQ 243
+ S +E + L L L + +E +E+ + YP H + AGIK+
Sbjct: 177 VVSFQIYLETFWPNLKGALELYKSLKETHRERELESREGNGKEYPEHLPLEILEAGIKSG 236
Query: 244 SLLQGM 249
QG+
Sbjct: 237 RYQQGV 242
>sp|Q8C0S1|DI3L1_MOUSE DIS3-like exonuclease 1 OS=Mus musculus GN=Dis3l PE=2 SV=2
Length = 1053
Score = 92.4 bits (228), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 67/249 (26%), Positives = 112/249 (44%), Gaps = 33/249 (13%)
Query: 14 MKIVREHYLRDDLSCGSELC---LACDTKEAILDKIPTSSKAILDKIPTSSSKKYMEPHY 70
++IVREHYLR + C S LC AC +L T HY
Sbjct: 19 LRIVREHYLRPSVPCNSPLCPQPAACRNDGKLLAAEVT--------------------HY 58
Query: 71 LLLDTNIILEQIDILEEPTLCNVILVQTILQEVKH-RSSSVYKRLKDLISNPSRKFYVFV 129
++ D ++ + +++LE P L VI +QT Q V+H R Y +L++L+ + +F
Sbjct: 59 VIPDWKVVQDYLEVLEFPELKGVIFMQTACQAVQHQRGRRQYNKLRNLLKDARHDCVLFA 118
Query: 130 NEHHYETYVEQEPGESVNDRNDRALRRVATWYEEHLESAVRVILLSEDVR--NRDLATQS 187
NE Y+ +E GE++ R++ A WY H E + +++++ED + +
Sbjct: 119 NEFQQHCYLPREKGEAMEKWQTRSIYNSAVWYYHHCEDRMPIVMVTEDEEAIQKYGSETE 178
Query: 188 GLLTSSIEGYIST----LSNGEPLLDKL--SKKEAVVETS-VKDSLYPLHATPSEIHAGI 240
G+ S + Y+ L L D + S++E E+ YP H + AGI
Sbjct: 179 GVFVISFKNYLDNFWPDLKAAHDLCDSILQSRRERETESQETHGKEYPEHLPLEVLEAGI 238
Query: 241 KNQSLLQGM 249
K+ +QG+
Sbjct: 239 KSGRYIQGI 247
>sp|Q5U2P0|DI3L1_RAT DIS3-like exonuclease 1 OS=Rattus norvegicus GN=Dis3l PE=2 SV=2
Length = 1054
Score = 89.7 bits (221), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 66/250 (26%), Positives = 113/250 (45%), Gaps = 35/250 (14%)
Query: 14 MKIVREHYLRDDLSCGSELC---LACDTKEAILDKIPTSSKAILDKIPTSSSKKYMEPHY 70
++IVREHYLR + C S LC C +L T HY
Sbjct: 19 LRIVREHYLRPSVPCNSPLCPQPATCRNDGKLLSAEVT--------------------HY 58
Query: 71 LLLDTNIILEQIDILEEPTLCNVILVQTILQEVKH-RSSSVYKRLKDLISNPSRKFYVFV 129
++ D ++ + +++LE P L +I +QT Q V+H R Y +L++L+ + +F
Sbjct: 59 VIPDWKVVQDYLEVLEFPELKGIIFMQTACQAVQHQRGRRQYNKLRNLLKDARHDCVLFA 118
Query: 130 NEHHYETYVEQEPGESVNDRNDRALRRVATWYEEHLESAVRVILLSED---VRNRDLATQ 186
NE Y+ +E GE++ R++ A WY H E + +++++ED ++ T+
Sbjct: 119 NEFQQHCYLPREKGEAMEKWQTRSIYNSAVWYYHHCEDRMPIVMVTEDEEAIQQYGSETE 178
Query: 187 SGLLTSSIEGYIST----LSNGEPLLDKL--SKKEAVVETS-VKDSLYPLHATPSEIHAG 239
G+ S + Y+ L L D + S++E E+ YP H + AG
Sbjct: 179 -GVFVISFKNYLDNFWPDLKAAHELCDSIIQSRRERESESQETHGKEYPEHLPLEVLEAG 237
Query: 240 IKNQSLLQGM 249
IK+ +QG+
Sbjct: 238 IKSGRYIQGI 247
>sp|Q5R5N8|DI3L1_PONAB DIS3-like exonuclease 1 OS=Pongo abelii GN=DIS3L PE=2 SV=1
Length = 1054
Score = 89.0 bits (219), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 67/250 (26%), Positives = 113/250 (45%), Gaps = 35/250 (14%)
Query: 14 MKIVREHYLRDDLSCGSELC---LACDTKEAILDKIPTSSKAILDKIPTSSSKKYMEPHY 70
++IVREHYLR + C S LC AC +L T HY
Sbjct: 19 LRIVREHYLRPCVPCHSPLCPQPAACSHDGKLLSNDVT--------------------HY 58
Query: 71 LLLDTNIILEQIDILEEPTLCNVILVQTILQEVKH-RSSSVYKRLKDLISNPSRKFYVFV 129
++ D ++ + ++ILE P L +I +QT Q V+H R Y +L++L+ + +F
Sbjct: 59 VIPDWKVVQDYLEILEFPELKGIIFMQTACQAVQHQRGRRQYNKLRNLLKDARHDCILFA 118
Query: 130 NEHHYETYVEQEPGESVNDRNDRALRRVATWYEEHLESAVRVILLSED---VRNRDLATQ 186
NE Y+ +E GES+ R++ A WY H + + +++++ED ++ T+
Sbjct: 119 NEFQQCCYLPRERGESMEKWQTRSIYNAAVWYYHHCQDRMPIVMVTEDEEAIQQYGSETE 178
Query: 187 SGLLTSSIEGYIST----LSNGEPLLDKLSKKEAVVETSVKDSL---YPLHATPSEIHAG 239
G+ S + Y+ L L D + + E ++S YP H + AG
Sbjct: 179 -GVFVISFKNYLDNFWPDLKAAHELCDSILQSRRERENESQESHGKEYPEHLPLEVLEAG 237
Query: 240 IKNQSLLQGM 249
IK+ +QG+
Sbjct: 238 IKSGRYIQGI 247
>sp|A0JN80|DI3L1_BOVIN DIS3-like exonuclease 1 OS=Bos taurus GN=DIS3L PE=2 SV=2
Length = 1053
Score = 89.0 bits (219), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 64/245 (26%), Positives = 110/245 (44%), Gaps = 27/245 (11%)
Query: 14 MKIVREHYLRDDLSCGSELCLACDTKEAILDKIPTSSKAILDKIPTSSSKKYMEPHYLLL 73
++IVREHYLR + C S LC P + D SS HY++
Sbjct: 19 LRIVREHYLRPSVPCNSPLC-------------PQPATCHNDGKLLSSDVT----HYMVP 61
Query: 74 DTNIILEQIDILEEPTLCNVILVQTILQEVKH-RSSSVYKRLKDLISNPSRKFYVFVNEH 132
D ++ + ++ILE P L ++ +QT Q V+H R Y +L++L+ + +F NE
Sbjct: 62 DWKVVQDYLEILEFPELKGIVFMQTACQAVQHQRGRRQYNKLRNLLKDARHDCVLFANEF 121
Query: 133 HYETYVEQEPGESVNDRNDRALRRVATWYEEHLESAVRVILLSEDVR--NRDLATQSGLL 190
Y+ +E GES+ R++ A WY H + + +++++ED + + G+
Sbjct: 122 QQSCYLPRERGESMEKWQSRSIYNAAAWYYHHCQDRMPIVMVTEDEEAIQQYGSETGGVF 181
Query: 191 TSSIEGYIST----LSNGEPLLDKLSKKEAVVETSVKDSL---YPLHATPSEIHAGIKNQ 243
S + Y+ L L + + + E ++S YP H + AGIK+
Sbjct: 182 VISFKNYLDNFWPDLKAAHELCESILQSRRERENESQESHGKEYPEHVPLEVLEAGIKSG 241
Query: 244 SLLQG 248
+QG
Sbjct: 242 RYIQG 246
>sp|Q8TF46|DI3L1_HUMAN DIS3-like exonuclease 1 OS=Homo sapiens GN=DIS3L PE=1 SV=2
Length = 1054
Score = 88.2 bits (217), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 66/250 (26%), Positives = 113/250 (45%), Gaps = 35/250 (14%)
Query: 14 MKIVREHYLRDDLSCGSELC---LACDTKEAILDKIPTSSKAILDKIPTSSSKKYMEPHY 70
++IVREHYLR + C S LC AC +L T HY
Sbjct: 19 LRIVREHYLRPCVPCHSPLCPQPAACSHDGKLLSSDVT--------------------HY 58
Query: 71 LLLDTNIILEQIDILEEPTLCNVILVQTILQEVKH-RSSSVYKRLKDLISNPSRKFYVFV 129
++ D ++ + ++ILE P L +I +QT Q V+H R Y +L++L+ + +F
Sbjct: 59 VIPDWKVVQDYLEILEFPELKGIIFMQTACQAVQHQRGRRQYNKLRNLLKDARHDCILFA 118
Query: 130 NEHHYETYVEQEPGESVNDRNDRALRRVATWYEEHLESAVRVILLSED---VRNRDLATQ 186
NE Y+ +E GES+ R++ A WY H + + +++++ED ++ T+
Sbjct: 119 NEFQQCCYLPRERGESMEKWQTRSIYNAAVWYYHHCQDRMPIVMVTEDEEAIQQYGSETE 178
Query: 187 SGLLTSSIEGYIST----LSNGEPLLDKLSKKEAVVETSVKDSL---YPLHATPSEIHAG 239
G+ + + Y+ L L D + + E ++S YP H + AG
Sbjct: 179 -GVFVITFKNYLDNFWPDLKAAHELCDSILQSRRERENESQESHGKEYPEHLPLEVLEAG 237
Query: 240 IKNQSLLQGM 249
IK+ +QG+
Sbjct: 238 IKSGRYIQGI 247
>sp|Q6GN11|DI3L1_XENLA DIS3-like exonuclease 1 OS=Xenopus laevis GN=dis3l PE=2 SV=2
Length = 1040
Score = 88.2 bits (217), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 69/249 (27%), Positives = 116/249 (46%), Gaps = 36/249 (14%)
Query: 14 MKIVREHYLRDDLSCGSELCLACDTKEAILDKIPTSSKAILDKIPTSSSKKYMEPHYLLL 73
++ VREHYLR+D+ CGS LC C P K + +++ HY++
Sbjct: 18 VRAVREHYLREDVRCGSALCHTC----------PRDGKLLSEELT----------HYVVP 57
Query: 74 DTNIILEQIDILEEPTLCNVILVQTILQEVKH-RSSSVYKRLKDLISNPSRKFYVFVNEH 132
D ++ + ++LE P L +I++QT Q V+H R YK+L L+ + +F NE
Sbjct: 58 DCQVLQDYQEVLEFPELRGIIIMQTACQAVQHQRGRRQYKKLCSLLRDTRHDCILFSNEF 117
Query: 133 HYETYVEQEPGESVNDRNDRALRRVATWYEEHLESAVRVILLSED---VRNRDLATQSGL 189
Y+ +E GES R + WY +H + + V++++ED + + TQ +
Sbjct: 118 QNHAYLPREMGESALAWQTRCIYNSCVWYYQHCQKKIPVVMVTEDESVIGKYNTETQE-V 176
Query: 190 LTSSIEGYISTL-SNGEPLLD--------KLSKKEAVVETSVKDSLYPLHATPSEIHAGI 240
S + Y+ T N + L+ L +K E++ K+ YP H + AGI
Sbjct: 177 YVVSFQIYLETFWPNFKGALELYKSLRDTHLERKLESRESNGKE--YPEHLPLEILEAGI 234
Query: 241 KNQSLLQGM 249
K+ QG+
Sbjct: 235 KSGRYKQGV 243
>sp|Q17632|RRP44_CAEEL Probable exosome complex exonuclease RRP44 OS=Caenorhabditis
elegans GN=dis-3 PE=3 SV=2
Length = 961
Score = 67.0 bits (162), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 51/174 (29%), Positives = 86/174 (49%), Gaps = 17/174 (9%)
Query: 13 VMKIVREHYLRDDLSCGSELCLAC-DTKEAILDKIPTSSKAILDKIPTSSSKKYMEPHYL 71
V K E YLR+DLSCG C C D L KI P ++K + H L
Sbjct: 27 VYKRAEERYLRNDLSCGLAQCGTCKDFGTNPLLKIEN---------PVRNAK--VGRHAL 75
Query: 72 LLDTNIILEQIDILEEPTLCNVILVQTILQEVKHRSSSVYKRLKDLISNPSR-KFYVFVN 130
++D+ ++ D+ + L ++I+ QT+ + VK ++ YK++ L ++ +F+VF+N
Sbjct: 76 IVDSTSLIRFYDLFDSSLLRDLIVTQTVWEGVKAKAVPAYKKMNSLCYEDAKDRFHVFMN 135
Query: 131 EHHYETYVEQEPGESVNDRNDRALRRVATWYEEHLES---AVRVILLSEDVRNR 181
E H ET+ E E ++ R + L A + + H + A V++ ED + R
Sbjct: 136 EFHCETFSESSKFEDLS-RGEELLLSTALYLKTHWQKHNVAPVVLVFDEDSKKR 188
>sp|O60182|RFC1_SCHPO Replication factor C subunit 1 OS=Schizosaccharomyces pombe (strain
972 / ATCC 24843) GN=rfc1 PE=1 SV=1
Length = 934
Score = 32.7 bits (73), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 17/51 (33%), Positives = 31/51 (60%), Gaps = 1/51 (1%)
Query: 13 VMKIVREHYL-RDDLSCGSELCLACDTKEAILDKIPTSSKAILDKIPTSSS 62
+++++ E+YL R+D +EL L D E ++ IPT++K+ + SSS
Sbjct: 795 IIELMDEYYLNREDFDSITELVLPADAGEKLMKTIPTAAKSAFTRKYNSSS 845
>sp|P19092|CYSP1_HAECO Cathepsin B-like cysteine proteinase 1 OS=Haemonchus contortus
GN=AC-1 PE=2 SV=1
Length = 342
Score = 32.3 bits (72), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 18/40 (45%), Positives = 22/40 (55%), Gaps = 2/40 (5%)
Query: 13 VMKIVREHYLRDDLSCGSELCLACDTKEAILDKIPTSSKA 52
V K Y+RD +CGS C A T AI D+I +SKA
Sbjct: 96 VWKNCTTFYIRDQANCGS--CWAVSTAAAISDRICIASKA 133
>sp|P25793|CYSP2_HAECO Cathepsin B-like cysteine proteinase 2 OS=Haemonchus contortus
GN=AC-2 PE=2 SV=1
Length = 342
Score = 32.0 bits (71), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 18/40 (45%), Positives = 22/40 (55%), Gaps = 2/40 (5%)
Query: 13 VMKIVREHYLRDDLSCGSELCLACDTKEAILDKIPTSSKA 52
V K Y+RD +CGS C A T AI D+I +SKA
Sbjct: 96 VWKNCTTFYIRDQANCGS--CWAVSTAAAISDRICIASKA 133
>sp|P54334|XKDO_BACSU Phage-like element PBSX protein XkdO OS=Bacillus subtilis (strain
168) GN=xkdO PE=4 SV=2
Length = 1332
Score = 31.6 bits (70), Expect = 5.7, Method: Composition-based stats.
Identities = 26/122 (21%), Positives = 57/122 (46%), Gaps = 19/122 (15%)
Query: 106 RSSSVYKRLKDLISNPSRKFYVFVNEHHYETYVEQEPGESVNDRNDRALRRVATWYEEHL 165
R+++ YK++K ++SN F + + D+ ++R+ + +++L
Sbjct: 105 RTAAAYKKIKKMLSNQKLSFLLIPD-----------------DKVTSTVKRIIGYIKKNL 147
Query: 166 ESAVRVILLSEDVRNRDLATQSGLLTSSIEGYISTLSNGEPLLDKLSKKEAVV--ETSVK 223
++ V L D + + + LL + Y + + DK++KKE+++ ETS K
Sbjct: 148 KNGYTVKLKVIDEITKTVNRLTALLRKFEKTYYVKVVVKTKISDKINKKESLINKETSKK 207
Query: 224 DS 225
+S
Sbjct: 208 ES 209
>sp|Q52PJ5|DPYL3_DANRE Dihydropyrimidinase-related protein 3 OS=Danio rerio GN=dpysl3 PE=2
SV=1
Length = 567
Score = 30.8 bits (68), Expect = 8.5, Method: Compositional matrix adjust.
Identities = 22/73 (30%), Positives = 32/73 (43%), Gaps = 3/73 (4%)
Query: 96 VQTILQEVKHRSSSVYKRLKDLISNPSRKFY---VFVNEHHYETYVEQEPGESVNDRNDR 152
V+T+++E S VY KDL + + Y F+ EH V E GE + + R
Sbjct: 152 VETLIKEKGVNSFQVYMAFKDLYQMSNTELYEVFTFLGEHGGIAQVHAENGEIIAEEQAR 211
Query: 153 ALRRVATWYEEHL 165
L T E H+
Sbjct: 212 MLEMGITGPEGHV 224
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.316 0.132 0.370
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 89,082,478
Number of Sequences: 539616
Number of extensions: 3454909
Number of successful extensions: 10494
Number of sequences better than 100.0: 42
Number of HSP's better than 100.0 without gapping: 14
Number of HSP's successfully gapped in prelim test: 28
Number of HSP's that attempted gapping in prelim test: 10442
Number of HSP's gapped (non-prelim): 42
length of query: 254
length of database: 191,569,459
effective HSP length: 115
effective length of query: 139
effective length of database: 129,513,619
effective search space: 18002393041
effective search space used: 18002393041
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 60 (27.7 bits)