Query psy4844
Match_columns 254
No_of_seqs 135 out of 342
Neff 6.5
Searched_HMMs 29240
Date Fri Aug 16 19:10:54 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy4844.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/4844hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2wp8_J Exosome complex exonucl 100.0 1.9E-65 6.5E-70 525.7 21.3 246 6-253 1-257 (977)
2 2dok_A Telomerase-binding prot 99.9 3.6E-24 1.2E-28 182.0 -2.0 134 68-201 12-183 (186)
3 2hwy_A Protein SMG5; RNA degra 99.0 4.7E-10 1.6E-14 93.2 6.4 132 69-202 3-161 (164)
4 3ix7_A Uncharacterized protein 98.6 4.6E-07 1.6E-11 72.9 10.9 108 69-202 6-130 (134)
5 3i8o_A KH domain-containing pr 98.3 3.4E-06 1.2E-10 68.4 9.5 113 69-195 4-131 (142)
6 1o4w_A PIN (PILT N-terminus) d 97.5 0.00026 8.9E-09 56.8 7.8 98 71-196 26-137 (147)
7 2lcq_A Putative toxin VAPC6; P 97.1 0.00021 7.2E-09 58.6 3.2 114 69-201 11-128 (165)
8 1v96_A Hypothetical protein PH 91.0 0.29 1E-05 38.0 5.0 118 71-201 7-140 (149)
9 2fe1_A Conserved hypothetical 77.9 2.5 8.5E-05 33.3 4.4 106 71-190 28-156 (156)
10 3h87_A Putative uncharacterize 68.8 7.6 0.00026 31.0 5.3 110 71-192 21-147 (156)
11 2h1c_A Trafficking protein B; 41.0 21 0.00071 26.3 3.3 35 71-105 2-45 (139)
12 1v8p_A Hypothetical protein PA 33.9 31 0.0011 27.3 3.4 111 71-201 30-155 (158)
13 3tnd_A TRNA(FMet)-specific end 28.4 34 0.0012 25.2 2.6 48 71-119 4-65 (132)
14 2ftc_A Mitochondrial ribosomal 27.2 47 0.0016 27.3 3.5 34 169-202 33-66 (189)
15 1w8i_A Putative VAPC ribonucle 26.3 37 0.0013 26.1 2.5 120 71-200 3-145 (156)
16 3zvk_A VAPC2, toxin of toxin-a 25.7 34 0.0012 25.3 2.1 95 71-178 3-118 (134)
17 1fiz_L Beta-acrosin light chai 25.1 19 0.00066 20.2 0.4 9 24-32 6-14 (26)
18 3kwm_A Ribose-5-phosphate isom 23.1 1.2E+02 0.004 25.7 5.2 41 157-197 37-79 (224)
19 1fiw_L Beta-acrosin light chai 22.8 23 0.0008 19.9 0.5 9 24-32 5-13 (26)
20 2pjm_A Ribose-5-phosphate isom 20.4 38 0.0013 28.8 1.6 29 169-197 48-76 (226)
No 1
>2wp8_J Exosome complex exonuclease DIS3; nucleus, hydrolase, RNA-binding, exonucle binding, mitochondrion, rRNA processing; 3.00A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.9e-65 Score=525.67 Aligned_cols=246 Identities=37% Similarity=0.620 Sum_probs=189.6
Q ss_pred EEcccCceeEeeeeeeccCCcCcCCCcCcccccchhccccCCCCCccccCCCCCCCCCCCCCCeEEEechHHHhhchhhc
Q psy4844 6 VQSSVWLVMKIVREHYLRDDLSCGSELCLACDTKEAILDKIPTSSKAILDKIPTSSSKKYMEPHYLLLDTNIILEQIDIL 85 (254)
Q Consensus 6 ~ktr~G~v~kvvrE~YLRdDI~Cg~~~C~~C~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~lVpDtnvll~~~d~l 85 (254)
||||+|+|+|+|||||||||||||+++|..|... .+.++++....++|+..|.. ++.++.+||+||||||+|||||+|
T Consensus 1 ~~t~~g~~~k~vrE~YlR~Di~C~~~~C~~C~~~-~~~~~~~~~~~~~l~~~~~~-~~~~~~~~~~i~d~~v~l~~~d~l 78 (977)
T 2wp8_J 1 VRSRNGGATKIVREHYLRSDIPCLSRSCTKCPQI-VVPDAQNELPKFILSDSPLE-LSAPIGKHYVVLDTNVVLQAIDLL 78 (977)
T ss_dssp -----------CCCCCCBSCCCCCBTTCSSGGGT-CCCCTTSCCCCCCBCSSCCB-CSTTTSBEEEEECHHHHHHHHHHH
T ss_pred CccccCcEEEEEcceeccCCcCcCCCCCcccccc-ccccccccccccccccCccc-cccCCCCeEEEecHHHHHHHHHHh
Confidence 6899999999999999999999999999999765 23445555556678877753 445678999999999999999999
Q ss_pred cCC-CCCceeeeHHHHHHHhcCChhHHHHHHHHhcCCC--CcEEEEeCCccccccccCCCCCCcCCcccHHHHHHHHHHH
Q psy4844 86 EEP-TLCNVILVQTILQEVKHRSSSVYKRLKDLISNPS--RKFYVFVNEHHYETYVEQEPGESVNDRNDRALRRVATWYE 162 (254)
Q Consensus 86 e~~-~~~~VII~qTVleev~~rs~~~y~RLr~li~~~~--~~~~vF~Ne~~~~T~v~r~~~es~~drndr~I~~aa~wY~ 162 (254)
|++ .+.|||||||||+||+++|.+.|+|||+|+++++ ++||||+||||.+||++|.++||+||||||+|++||.||+
T Consensus 79 e~~~~~~~vii~qtv~~~v~~~~~~~y~rl~~l~~~~~~~~~~~vF~ne~~~~t~~~~~~~es~~~r~~r~i~~~~~wy~ 158 (977)
T 2wp8_J 79 ENPNCFFDVIVPQIVLDEVRNKSYPVYTRLRTLCRDSDDHKRFIVFHNEFSEHTFVERLPNETINDRNDRAIRKTCQWYS 158 (977)
T ss_dssp TCTTTCCEEEEEHHHHHHHHHHCHHHHHHHHHHHHTCCSSCEEEEECTTTBTTTCCC-------CCHHHHHHHHHHHHHH
T ss_pred hcccccCCEEEEHHHHHHHHhcCHHHHHHHHHHhcCcCcCceEEEEccccchhhcccCccCCChhhhhHHHHHHHHHHHH
Confidence 999 9999999999999999999999999999999999 9999999999999999999999999999999999999999
Q ss_pred HHhCc-CceEEEEeCChhhHHHHHh---cCcceeeHHHHHHhCCCchhhhhhhcccch---h-hccCCCCCCCCCCCCHH
Q psy4844 163 EHLES-AVRVILLSEDVRNRDLATQ---SGLLTSSIEGYISTLSNGEPLLDKLSKKEA---V-VETSVKDSLYPLHATPS 234 (254)
Q Consensus 163 ~Hl~~-~~~VvlvT~D~~~~~ka~~---~gi~~~s~~eYv~~~~~~~~L~D~l~~~~~---~-~~~~~~~~~y~ehL~~~ 234 (254)
+||+. .++|||||+|.+|+.+|++ +|+.++|+.||+++++++++|+|+|+.... + .+.+.++.+|+||||++
T Consensus 159 ~hl~~~~~~vv~~t~d~~~~~~~~~~~~~~~~~~s~~~y~~~~~~~~~l~d~~~~~~~~~~~~~~~~~~~~~f~~yl~~~ 238 (977)
T 2wp8_J 159 EHLKPYDINVVLVTNDRLNREAATKEVESNIITKSLVQYIELLPNADDIRDSIPQMDSFDKDLERDTFSDFTFPEYYSTA 238 (977)
T ss_dssp HHHGGGTCEEEEEECC-----------CCCSCEEEHHHHHHTSTTTTCCCCC------------------CCCCCCCCHH
T ss_pred HhccccCCCEEEEeCCHHHHHHHhhhccCCcEEEEHHHHHHhccCcHHHHHHHhhhccccccccccccccCcCcCcCCHH
Confidence 99964 6899999999999999999 999999999999999999999999975541 1 11124577999999999
Q ss_pred HHHhhhhcCceEEEEEEEE
Q psy4844 235 EIHAGIKNQSLLQGMNLYL 253 (254)
Q Consensus 235 ~i~~Gik~G~l~qG~l~v~ 253 (254)
+|.+||++|++++|+|+++
T Consensus 239 ~l~~~l~~g~l~~G~l~v~ 257 (977)
T 2wp8_J 239 RVMGGLKNGVLYQGNIQIS 257 (977)
T ss_dssp HHHHHHHTTSSEEEEEEEC
T ss_pred HHHHHHHcCCEEEEEEEEc
Confidence 9999999999999999985
No 2
>2dok_A Telomerase-binding protein EST1A; telomerase-associated protein, unknown function; 1.80A {Homo sapiens} PDB: 2hww_A 2hwx_A
Probab=99.87 E-value=3.6e-24 Score=181.98 Aligned_cols=134 Identities=15% Similarity=0.180 Sum_probs=92.4
Q ss_pred CeEEEechHHHhhchhhccCCC---CCceeeeHHHHHHHhcC-------------------ChhHHHH-HHHHhcCCCCc
Q psy4844 68 PHYLLLDTNIILEQIDILEEPT---LCNVILVQTILQEVKHR-------------------SSSVYKR-LKDLISNPSRK 124 (254)
Q Consensus 68 ~~~lVpDtnvll~~~d~le~~~---~~~VII~qTVleev~~r-------------------s~~~y~R-Lr~li~~~~~~ 124 (254)
++|+|||||||+|+++.|+.+. +.+||||+||++||++. ++|...| |.+.++.....
T Consensus 12 ~~~~VlDTNvLl~~~~~l~~~~~~~~~~viIP~~VleELd~lk~~~~~~~~~~~~~~~~~~~AR~a~~~L~~~~~~~~~~ 91 (186)
T 2dok_A 12 PLFLVPDTNGFIDHLASLARLLESRKYILVVPLIVINELDGLAKGQETDHRAGGYARVVQEKARKSIEFLEQRFESRDSC 91 (186)
T ss_dssp EEEEEECHHHHHHHHHHHHHHHHHTSSEEEEEHHHHHHHHHHHC-------CCHHHHHHHHHHHHHHHHHHHHHHTTCTT
T ss_pred CCEEEEEhHHHHcCHHHHHHHHcCCCeEEEECHHHHHHHHHhccCCCccccccchhHHHHHHHHHHHHHHHHHHhhCCCe
Confidence 5899999999999999999873 58999999999999972 1222222 22233332222
Q ss_pred EEEEeCC-cccc-ccccCCCCCCcCCcccHHHHHHHHHHHHHhCc-------------CceEEEEeCChhhHHHHHhcCc
Q psy4844 125 FYVFVNE-HHYE-TYVEQEPGESVNDRNDRALRRVATWYEEHLES-------------AVRVILLSEDVRNRDLATQSGL 189 (254)
Q Consensus 125 ~~vF~Ne-~~~~-T~v~r~~~es~~drndr~I~~aa~wY~~Hl~~-------------~~~VvlvT~D~~~~~ka~~~gi 189 (254)
...-... .... ........++.++++|++|+++|.||++|++. ..+|||||+|.+++.||.+.||
T Consensus 92 i~~~~~~g~~l~~v~~~~~~~~~~~~~~D~~IL~~a~~l~~~~~~~~~~~~~~~~~~~~~~vvLvTnD~nLr~KA~~~Gi 171 (186)
T 2dok_A 92 LRALTSRGNELESIAFRSEDITGQLGNNDDLILSCCLHYCKDKAKDFMPASKEEPIRLLREVVLLTDDRNLRVKALTRNV 171 (186)
T ss_dssp EEEECTTSCEESCCTTCCCCC----CCHHHHHHHHHHTTCCCCGGGGCCC---CCCEEEEEEEEECCCHHHHHHHHHTTC
T ss_pred EEEEeccCcccccccccccccccCCCCccHHHHHHHHHHHHhcccccccccccccccCCCcEEEEeCcHHHHHHHHHCCC
Confidence 2211110 0000 00112223356789999999999999988742 3589999999999999999999
Q ss_pred ceeeHHHHHHhC
Q psy4844 190 LTSSIEGYISTL 201 (254)
Q Consensus 190 ~~~s~~eYv~~~ 201 (254)
+++++.||+++.
T Consensus 172 ~~~~~~~~~~~~ 183 (186)
T 2dok_A 172 PVRDIPAFLTWA 183 (186)
T ss_dssp CEECHHHHHHHH
T ss_pred eeCcHHHHHHHh
Confidence 999999999863
No 3
>2hwy_A Protein SMG5; RNA degradation, decay, NMD, EST1A, P bodies, RNA binding protein; 2.75A {Homo sapiens}
Probab=98.99 E-value=4.7e-10 Score=93.19 Aligned_cols=132 Identities=10% Similarity=0.075 Sum_probs=77.5
Q ss_pred eEEEechHHHhhchhhccCC---CCCceeeeHHHHHHHhc-----CChhHHHH-HHHHhcCCCCcEEEEe-CCccccccc
Q psy4844 69 HYLLLDTNIILEQIDILEEP---TLCNVILVQTILQEVKH-----RSSSVYKR-LKDLISNPSRKFYVFV-NEHHYETYV 138 (254)
Q Consensus 69 ~~lVpDtnvll~~~d~le~~---~~~~VII~qTVleev~~-----rs~~~y~R-Lr~li~~~~~~~~vF~-Ne~~~~T~v 138 (254)
.|+|||||++++++.+++.. .-..||||.||++|++. +.+|...| |.+.++...+.+..=. ++...++-
T Consensus 3 ~ylVlDTN~Li~~l~~i~~l~~~~~~~IvIP~~Vi~ELD~LK~~~~~AR~Air~Le~~~~~~~~~lr~Q~~~~~~~~~~- 81 (164)
T 2hwy_A 3 PYLVPDTQALCHHLPVIRQLATSGRFIVIIPRTVIDGLDLLKKEHPGARDGIRYLEAEFKKGNRYIRCQKEVGKSFERH- 81 (164)
T ss_dssp CEEEECHHHHHHCHHHHHHHHHHSSSEEEECHHHHHHHHHHC-CCHHHHHHHHHHHHHHHHTCSSEEEC-----------
T ss_pred ceEEechHHHHhCHHHHHHHHhCCCcEEEEcHHHHHHHHHhccCCHHHHHHHHHHHHHHHhCCCeEEEEecCCcccccc-
Confidence 69999999999999999876 55789999999999994 34677777 6666665444443211 22211111
Q ss_pred cCCCCCCcCCcccHHHHHHHHHHHHHhC-----cCceEEEEeCCh-----h-------hHHHHHhcCcceeeHHHHHHhC
Q psy4844 139 EQEPGESVNDRNDRALRRVATWYEEHLE-----SAVRVILLSEDV-----R-------NRDLATQSGLLTSSIEGYISTL 201 (254)
Q Consensus 139 ~r~~~es~~drndr~I~~aa~wY~~Hl~-----~~~~VvlvT~D~-----~-------~~~ka~~~gi~~~s~~eYv~~~ 201 (254)
.......+.+++-.|+.++.+|.+.-+ .+.-|+++|+|. + ....|.+.|+.+.++.+|....
T Consensus 82 -~~~~~D~~~~~~d~IL~CC~~l~~~~~~~~~~~~~~VtlLtg~~l~~~~~~s~~~~~~~~~a~~~~v~i~~i~~F~~~w 160 (164)
T 2hwy_A 82 -KLKRQDADAWTLYKILDSCKQLTLAQGAGEEDPSGMVTIITGLPLDNPSVLSGPMQAALQAAAHASVDIKNVLDFYKQW 160 (164)
T ss_dssp ------------CHHHHHHHHHHSSCC----------------CEEEECSCCCC----CHHHHHSTTSEECCHHHHHHHC
T ss_pred -ccccCCccccchhHHHHHHHHHHhccCCCccCcCCEEEEEeCCcccccccCcHHHHHHHHHhhhCCCchhHHHHHHHHH
Confidence 111222345777899999999975532 134588899976 1 1455777999999999998765
Q ss_pred C
Q psy4844 202 S 202 (254)
Q Consensus 202 ~ 202 (254)
.
T Consensus 161 k 161 (164)
T 2hwy_A 161 K 161 (164)
T ss_dssp -
T ss_pred h
Confidence 3
No 4
>3ix7_A Uncharacterized protein TTHA0540; unknown function, thermus thermophilus HB8, structural genom 2, protein structure initiative; HET: MSE; 2.15A {Thermus thermophilus}
Probab=98.58 E-value=4.6e-07 Score=72.95 Aligned_cols=108 Identities=18% Similarity=0.222 Sum_probs=73.6
Q ss_pred eEEEechHHHhhc--hhhccCC-CCCceeeeHHHHHHHhcCC------h--------hHHHHHHHHhcCCCCcEEEEeCC
Q psy4844 69 HYLLLDTNIILEQ--IDILEEP-TLCNVILVQTILQEVKHRS------S--------SVYKRLKDLISNPSRKFYVFVNE 131 (254)
Q Consensus 69 ~~lVpDtnvll~~--~d~le~~-~~~~VII~qTVleev~~rs------~--------~~y~RLr~li~~~~~~~~vF~Ne 131 (254)
.+.||||+|+++. .++++.. -...+|||+.|++|+++.. . ..-++|++.- . +-+..+
T Consensus 6 ~~~vlDTSviIdGri~~~~~~gf~eg~liIP~~Vl~ELq~lA~s~d~~~r~rGr~gL~iL~~L~~~~----~--vei~~~ 79 (134)
T 3ix7_A 6 GGKVLDTSVLVDGRVAEVAAVGFLEGPLWVPHFVLKELQHFADSQDPLRRAKGRRGLETLERLREAA----P--LEVLET 79 (134)
T ss_dssp SCEEECHHHHHHCHHHHHHTTTCCCSCEEEEHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHS----C--EEEECC
T ss_pred CCeEcccceEEecHHHHHHHhccccCceecHHHHHHHHHHHHhccchhhHHHHHHHHHHHHHHHhcC----C--EEEeCC
Confidence 4678899999998 4555543 3356999999999999632 1 1122222221 2 222222
Q ss_pred ccccccccCCCCCCcCCcccHHHHHHHHHHHHHhCcCceEEEEeCChhhHHHHHhcCcceeeHHHHHHhCC
Q psy4844 132 HHYETYVEQEPGESVNDRNDRALRRVATWYEEHLESAVRVILLSEDVRNRDLATQSGLLTSSIEGYISTLS 202 (254)
Q Consensus 132 ~~~~T~v~r~~~es~~drndr~I~~aa~wY~~Hl~~~~~VvlvT~D~~~~~ka~~~gi~~~s~~eYv~~~~ 202 (254)
+ + ....-|..|++.|.-+ ..+|+|+|.+++..|+..||+++.+.+..+.+.
T Consensus 80 -----~----~---~~~~vD~~ll~lA~~~--------~~~lvTnD~~L~kvA~~~GI~Vl~l~~l~~al~ 130 (134)
T 3ix7_A 80 -----T----P---KGESVDEKLLFLARDL--------EAALVTNDHALLQMARIYGVKALSIQALAQALR 130 (134)
T ss_dssp -----C----C---SCSSHHHHHHHHHHHT--------TCEEEESCHHHHHHHHHTTCCEEEHHHHHHHTS
T ss_pred -----C----C---CcccHHHHHHHHHHHh--------CCEEEeCCHHHHHHHHHCCCeEEehHHHHHhhC
Confidence 1 1 1234578888887544 268999999999999999999999999988763
No 5
>3i8o_A KH domain-containing protein MJ1533; APC89320.5, methanocaldococcus jannaschii DSM 2661, structural genomics, PSI-2; 2.64A {Methanocaldococcus jannaschii}
Probab=98.30 E-value=3.4e-06 Score=68.44 Aligned_cols=113 Identities=21% Similarity=0.294 Sum_probs=71.4
Q ss_pred eEEEechHHHhhch--hhccCCCCC--ceeeeHHHHHHHhc----------CChhHHHHHHHHhcCCCCcEEEEeCCccc
Q psy4844 69 HYLLLDTNIILEQI--DILEEPTLC--NVILVQTILQEVKH----------RSSSVYKRLKDLISNPSRKFYVFVNEHHY 134 (254)
Q Consensus 69 ~~lVpDtnvll~~~--d~le~~~~~--~VII~qTVleev~~----------rs~~~y~RLr~li~~~~~~~~vF~Ne~~~ 134 (254)
..+||||+|+++.. ++++...+. .+|||+.|++|+++ +.....++|+++..+..=.+- |..+.
T Consensus 4 ~~~vlDTSviIdGrI~~~~~~g~leg~~iiIP~~Vl~EL~~~a~~~r~~GrrGLe~L~~L~~~~~~~~i~ve-i~~~r-- 80 (142)
T 3i8o_A 4 KKVCVDTCVVIDGRITELIERGKLKDATIIIPEAVVSELEYQANMGREIGYKGIEELRKLIEKASEHNIKVE-YYGER-- 80 (142)
T ss_dssp CEEEECHHHHHTTHHHHHHHTTTTTTCEEEEEHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHTTCCEE-EESCC--
T ss_pred CEEEeecceEEEcHHHHHHHcCCccCCeEEehHHHHHHHHHHHHccchhhHHHHHHHHHHHHHhhccCceEE-Eeccc--
Confidence 46799999999866 556655444 39999999999995 123456667665533211111 22211
Q ss_pred ccccc-CCCCCCcCCcccHHHHHHHHHHHHHhCcCceEEEEeCChhhHHHHHhcCcceeeHH
Q psy4844 135 ETYVE-QEPGESVNDRNDRALRRVATWYEEHLESAVRVILLSEDVRNRDLATQSGLLTSSIE 195 (254)
Q Consensus 135 ~T~v~-r~~~es~~drndr~I~~aa~wY~~Hl~~~~~VvlvT~D~~~~~ka~~~gi~~~s~~ 195 (254)
.++.+ +.+ ....-|..|++.|.-+ .-+|+|+|.++...|+..||+++.+.
T Consensus 81 ~~~~~i~~~---~~~~vD~~l~~lA~~~--------~a~lvTnD~~l~kvA~~~GI~V~~l~ 131 (142)
T 3i8o_A 81 PTREEIFLA---KSGEIDAMIRKVAKET--------NSILLTSDWIQYNLAKAQGIEAYFLE 131 (142)
T ss_dssp CCHHHHHSC---CSSSHHHHHHHHHHHT--------TCEEEESCHHHHHHHHHTTCCEEECC
T ss_pred Cchhhhccc---cCCcHHHHHHHHHHHh--------CCEEEcCCHHHHHHHHHcCCEEEEec
Confidence 01100 000 1123467777777543 25789999999999999999997764
No 6
>1o4w_A PIN (PILT N-terminus) domain; structural genomics, joint CEN structural genomics, JCSG, protein structure initiative, PS translation; 1.90A {Archaeoglobus fulgidus} SCOP: c.120.1.1
Probab=97.52 E-value=0.00026 Score=56.77 Aligned_cols=98 Identities=18% Similarity=0.236 Sum_probs=65.8
Q ss_pred EEechHHHhhchhh-------ccCCCCCceeeeHHHHHHHhcC---Ch----hHHHHHHHHhcCCCCcEEEEeCCccccc
Q psy4844 71 LLLDTNIILEQIDI-------LEEPTLCNVILVQTILQEVKHR---SS----SVYKRLKDLISNPSRKFYVFVNEHHYET 136 (254)
Q Consensus 71 lVpDtnvll~~~d~-------le~~~~~~VII~qTVleev~~r---s~----~~y~RLr~li~~~~~~~~vF~Ne~~~~T 136 (254)
+|+||||+++.+.. +.......++||..|+.|+..- .. ....++.+++... -+..
T Consensus 26 vvLDTNvli~~~~~~~~~~~~l~~~l~~~~~I~~~vl~EL~~~~~~~~~~~~~~~~~~~~ll~~~----~vv~------- 94 (147)
T 1o4w_A 26 AVVDTNVLMYVYLNKADVVGQLREFGFSRFLITASVKRELEKLEMSLRGKEKVAARFALKLLEHF----EVVE------- 94 (147)
T ss_dssp EEECHHHHHHHHHHTCCHHHHHHHTTEEEEEEEHHHHHHHHHHHHHCCHHHHHHHHHHHHHHTTS----EEEC-------
T ss_pred EEEEhhHHHHHHHcCchHHHHHHHhccCCEEEcHHHHHHHHHHHhccCcchHHHHHHHHHHHhcC----cEee-------
Confidence 78899999987731 1111015799999999998852 11 2344455666432 1110
Q ss_pred cccCCCCCCcCCcccHHHHHHHHHHHHHhCcCceEEEEeCChhhHHHHHhcCcceeeHHH
Q psy4844 137 YVEQEPGESVNDRNDRALRRVATWYEEHLESAVRVILLSEDVRNRDLATQSGLLTSSIEG 196 (254)
Q Consensus 137 ~v~r~~~es~~drndr~I~~aa~wY~~Hl~~~~~VvlvT~D~~~~~ka~~~gi~~~s~~e 196 (254)
.+ .+. |..|.+.|... + .+|+|+|.+.+.+|+..|++++++..
T Consensus 95 ----~~----~~~-D~~Ila~A~~~------~--~~LvT~D~~l~~~a~~~Gv~vi~~~~ 137 (147)
T 1o4w_A 95 ----TE----SEG-DPSLIEAAEKY------G--CILITNDKELKRKAKQRGIPVGYLKE 137 (147)
T ss_dssp ----CS----SCS-HHHHHHHHHHH------T--CEEECCCHHHHHHHHHTTCCEECCCC
T ss_pred ----CC----CCc-hHHHHHHHHHh------C--CEEEECCHHHHHHHHHCCCeEEEecC
Confidence 11 235 89999998742 2 68999999999999999999988763
No 7
>2lcq_A Putative toxin VAPC6; PIN domain, Zn ribbon domain, ribosome biogenesis, metal BIN protein; NMR {Pyrococcus horikoshii}
Probab=97.15 E-value=0.00021 Score=58.64 Aligned_cols=114 Identities=23% Similarity=0.321 Sum_probs=71.1
Q ss_pred eEEEechHHHhhchhhccCCCCCceeeeHHHHHHHhcCChhHHHHHHHHhcCCCCcEEEEeCC-ccccccc--cCCCCC-
Q psy4844 69 HYLLLDTNIILEQIDILEEPTLCNVILVQTILQEVKHRSSSVYKRLKDLISNPSRKFYVFVNE-HHYETYV--EQEPGE- 144 (254)
Q Consensus 69 ~~lVpDtnvll~~~d~le~~~~~~VII~qTVleev~~rs~~~y~RLr~li~~~~~~~~vF~Ne-~~~~T~v--~r~~~e- 144 (254)
+.+|+|||+|++..++ .+++|..|++|++....+ .+|..+... +.+.+..-+ ....... .+..++
T Consensus 11 ~~~VlDTs~lI~~~~~-------~l~~p~~V~~El~~~~~r--~~l~~l~~~--~~l~v~~~~~~~i~~v~~~~~~~gd~ 79 (165)
T 2lcq_A 11 KTLVLDSSVFIQGIDI-------EGYTTPSVVEEIKDRESK--IFLESLISA--GKVKIAEPSKESIDRIIQVAKETGEV 79 (165)
T ss_dssp SSCEECHHHHHHTCCC-------CEEECHHHHTTCCSSHHH--HHHHHHHHT--TSEEECCCCHHHHHHHHHHHHHHSCS
T ss_pred cEEEEcChHHHcCCCC-------CEEEChhhHHhhcCHHHH--HHHHHhhcc--CCEEEecCCHHHHHHHHHHHHHcCCc
Confidence 4578899999986632 899999999999864433 245555542 233332111 1000000 011122
Q ss_pred CcCCcccHHHHHHHHHHHHHhCcCceEEEEeCChhhHHHHHhcCcceeeHHHHHHhC
Q psy4844 145 SVNDRNDRALRRVATWYEEHLESAVRVILLSEDVRNRDLATQSGLLTSSIEGYISTL 201 (254)
Q Consensus 145 s~~drndr~I~~aa~wY~~Hl~~~~~VvlvT~D~~~~~ka~~~gi~~~s~~eYv~~~ 201 (254)
..-+..|-.+++.|.-+ + ..++|+|.+.+..|+..||.+.++.+.++..
T Consensus 80 ~~Ls~~D~~lIaLA~~l----~----~~lvT~D~~l~~vA~~~Gv~v~~~~~~i~~~ 128 (165)
T 2lcq_A 80 NELSKADIEVLALAYEL----K----GEIFSDDYNVQNIASLLGLRFRTLKRGIKKV 128 (165)
T ss_dssp SCSCHHHHHHHHHHHHH----T----CCEECCCHHHHHHHHHTTCCEECCSCCCSSC
T ss_pred ccCCHHHHHHHHhHHHh----C----CeEEcCcHHHHHHHHHCCCeEEchhhhcccc
Confidence 13345677777776533 2 3688999999999999999998887555543
No 8
>1v96_A Hypothetical protein PH0500; rossmann fold, tRNA synthetase, nucleotide binding protein, structural genomics; 1.75A {Pyrococcus horikoshii} SCOP: c.120.1.1 PDB: 1ye5_A 1y82_A
Probab=91.03 E-value=0.29 Score=38.02 Aligned_cols=118 Identities=14% Similarity=0.137 Sum_probs=66.7
Q ss_pred EEechHHHhhchh-----hccCC-CCCceeeeHHHHHHHhc---CC-hhHHHHHHHHhcCCCCcEEEEe-CCcccccccc
Q psy4844 71 LLLDTNIILEQID-----ILEEP-TLCNVILVQTILQEVKH---RS-SSVYKRLKDLISNPSRKFYVFV-NEHHYETYVE 139 (254)
Q Consensus 71 lVpDtnvll~~~d-----~le~~-~~~~VII~qTVleev~~---rs-~~~y~RLr~li~~~~~~~~vF~-Ne~~~~T~v~ 139 (254)
+++||||++..+. +++.- .-..++++..|+.|+-. +. ......+..++. .+-+.. ++.....+..
T Consensus 7 ~llDTnvli~~l~~~~~~~~~~~~~~~~~~is~i~~~El~~~~~~~~~~~~~~~~~~l~----~~~il~~~~~~~~~a~~ 82 (149)
T 1v96_A 7 ITFDSLALIKMHSQNMKRILEVTLAKFTVNLSIVTVYRYLTARAYLKKNIEAEFEILKD----IYNIVPLLDDIAIKAAQ 82 (149)
T ss_dssp EEECHHHHHHHTSGGGHHHHHHHHHHCEEEEEHHHHHHHHHHC--CCSCHHHHHHHHHH----HSEEECCCHHHHHHHHH
T ss_pred EEeehHHHHHHHccchHHHHHHHhcCCCEEeeHhhHHHHHHHHHhcCcchHHHHHHHHh----cCCeeCCCHHHHHHHHH
Confidence 5679999998876 11110 11347788888888763 21 112344555553 222222 2111111100
Q ss_pred -----CCCCCCcCCcccHHHHHHHHHHHHHhCcCceEEEEeCChhhHHHHHhcCcceeeHHHHHHhC
Q psy4844 140 -----QEPGESVNDRNDRALRRVATWYEEHLESAVRVILLSEDVRNRDLATQSGLLTSSIEGYISTL 201 (254)
Q Consensus 140 -----r~~~es~~drndr~I~~aa~wY~~Hl~~~~~VvlvT~D~~~~~ka~~~gi~~~s~~eYv~~~ 201 (254)
+..+. ..+-+|..|.++|.-+ +. .|+|.|...-.+....|+.++|..||++.+
T Consensus 83 l~~~~~~~g~-~~~~~D~lIaA~A~~~------~~--~lvT~D~kdf~~i~~~~i~~i~~~efl~~~ 140 (149)
T 1v96_A 83 IEANLIKKEI-TLDMEDIITATTAIYT------NS--LLVTDDPKRYEPIRRFGLDTMPLDKFIKEV 140 (149)
T ss_dssp HHHHHHHTTC-CCCHHHHHHHHHHHHH------TC--EEEESCHHHHGGGGGGTCCEEEHHHHHHHH
T ss_pred HHHHHHHCCC-CCCHhHHHHHHHHHHc------CC--EEEECCHHHHhhhhhCCeeecCHHHHHHHH
Confidence 11121 2456788888887533 23 488999644555666799999999999875
No 9
>2fe1_A Conserved hypothetical protein PAE0151; PIN domain, structural genomics, unknown function; 2.20A {Pyrobaculum aerophilum} SCOP: c.120.1.1
Probab=77.87 E-value=2.5 Score=33.27 Aligned_cols=106 Identities=13% Similarity=-0.029 Sum_probs=55.8
Q ss_pred EEechHHHhhchhhccCC---------CCCceeeeHHHHHHHhc----------CChhHHHHHHHH----hcCCCCcEEE
Q psy4844 71 LLLDTNIILEQIDILEEP---------TLCNVILVQTILQEVKH----------RSSSVYKRLKDL----ISNPSRKFYV 127 (254)
Q Consensus 71 lVpDtnvll~~~d~le~~---------~~~~VII~qTVleev~~----------rs~~~y~RLr~l----i~~~~~~~~v 127 (254)
+++||||++..+.- +.. ....++++..++-|+-. .+.....++.+. +.. --+.
T Consensus 28 ivlDTsvli~~l~~-~~~~~~a~~~l~~~~~~~is~~~~~Ev~~vl~r~~~~~~l~~~~~~~~l~~~~~~l~~---l~i~ 103 (156)
T 2fe1_A 28 LVVDASAIAALYVP-EERSEQAERAVSQAQELHTLDLAAYEVANDLWKHARRGLLREDEASNMLEELWEFFKA---LKVH 103 (156)
T ss_dssp EEECHHHHHTTSSS-CCCCHHHHHHHHHCSEEEEEHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHTT---SEEE
T ss_pred EEEEHHHHHHHHhC-CCCcHHHHHHHhhccCeehHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHh---cccc
Confidence 68899999988732 211 12468899999988752 122233332222 321 1111
Q ss_pred EeCCccccccccCCCCCCcCCcccHHHHHHHHHHHHHhCcCceEEEEeCChhhHHHHHhcCcc
Q psy4844 128 FVNEHHYETYVEQEPGESVNDRNDRALRRVATWYEEHLESAVRVILLSEDVRNRDLATQSGLL 190 (254)
Q Consensus 128 F~Ne~~~~T~v~r~~~es~~drndr~I~~aa~wY~~Hl~~~~~VvlvT~D~~~~~ka~~~gi~ 190 (254)
+..+...... +.......+-.|..|+++|.-+ +.+ |+|.|......|+..|++
T Consensus 104 ~~~~~~~~A~--~l~~~~~l~~~Dal~lA~A~~~------~~~--LvT~D~~l~~~a~~~Gi~ 156 (156)
T 2fe1_A 104 SYAEVLKDAF--ALALKHGVTVYDAAYVALAEKI------GGK--LLTLDRQLAEKFPALVTP 156 (156)
T ss_dssp CGGGTHHHHH--HHHHHHTCCHHHHHHHHHHHHH------TCE--EECSCHHHHHHCTTTBC-
T ss_pred cchHHHHHHH--HHHHHhCcCHHHHHHHHHHHHc------CCC--EEeCCHHHHHHHHHcCCC
Confidence 1111111000 0000011245677887777654 233 999999988888887763
No 10
>3h87_A Putative uncharacterized protein; toxin antitoxin complex, vapbc complex, RHH motif, structura genomics; 1.49A {Mycobacterium tuberculosis}
Probab=68.83 E-value=7.6 Score=30.96 Aligned_cols=110 Identities=17% Similarity=0.138 Sum_probs=58.5
Q ss_pred EEechHHHhhchh-----hccCC-CCCceeeeHHHHHHHhc--CChhHHHHHHHH--hcCCCCcEEEE-eCCcccccccc
Q psy4844 71 LLLDTNIILEQID-----ILEEP-TLCNVILVQTILQEVKH--RSSSVYKRLKDL--ISNPSRKFYVF-VNEHHYETYVE 139 (254)
Q Consensus 71 lVpDtnvll~~~d-----~le~~-~~~~VII~qTVleev~~--rs~~~y~RLr~l--i~~~~~~~~vF-~Ne~~~~T~v~ 139 (254)
+++||||++..+. .+... ....+.|+.-++-|+.. ++.+...+++.. ++. |-+. .++.....|..
T Consensus 21 ~LLDTnvli~~l~~~~~~~l~~~~~~~~l~iS~it~~El~~G~~~~~~~~~l~~~~~L~~----~~vlp~d~~~a~~a~~ 96 (156)
T 3h87_A 21 WLIDKSALVRLTDSPDMEIWSNRIERGLVHITGVTRLEVGFSAECGEIARREFREPPLSA----MPVEYLTPRIEDRALE 96 (156)
T ss_dssp EEECHHHHTTGGGCTTHHHHHHHHHTTCEEEEHHHHHHHHHHSSSHHHHHHHHHSTTGGG----SCEECCCHHHHHHHHH
T ss_pred EEEEHHHHHHHHcCHHHHHHHHhccCCCEEEccccHHHHhhhhhCchHHHHHHHhhcccC----CCeecCCHHHHHHHHH
Confidence 4569999998773 11110 12457888888888774 356677888887 752 2121 12211111111
Q ss_pred -----CCCCCC-cCCcccHHHHHHHHHHHHHhCcCceEEEEeCChhhHHHHHhcCccee
Q psy4844 140 -----QEPGES-VNDRNDRALRRVATWYEEHLESAVRVILLSEDVRNRDLATQSGLLTS 192 (254)
Q Consensus 140 -----r~~~es-~~drndr~I~~aa~wY~~Hl~~~~~VvlvT~D~~~~~ka~~~gi~~~ 192 (254)
+..|.. ...-+|-.|.++|.-+ + ..|||+|.+-..-+.-.|+++.
T Consensus 97 i~~~l~~~G~~~~i~~~D~lIAAtA~~~------g--l~LvT~d~dF~~i~~~~~l~~~ 147 (156)
T 3h87_A 97 VQTLLADRGHHRGPSIPDLLIAATAELS------G--LTVLHVDKDFDAIAALTGQKTE 147 (156)
T ss_dssp HHHHHHHTTCTTSSCHHHHHHHHHHHHH------T--CEEEESCTHHHHHHHHHCCCEE
T ss_pred HHHHHHhcCCCCCCChhHHHHHHHHHHC------C--CEEEEeChhhhhhhhcCCCceE
Confidence 112222 1244555555555322 1 3577988776666666666643
No 11
>2h1c_A Trafficking protein B; DNA binding, PIN domain, RHH domain, gene regulation; 1.80A {Neisseria gonorrhoeae} SCOP: c.120.1.1 PDB: 2bsq_A* 2h1o_A*
Probab=41.03 E-value=21 Score=26.29 Aligned_cols=35 Identities=34% Similarity=0.479 Sum_probs=23.3
Q ss_pred EEechHHHhhchh---------hccCCCCCceeeeHHHHHHHhc
Q psy4844 71 LLLDTNIILEQID---------ILEEPTLCNVILVQTILQEVKH 105 (254)
Q Consensus 71 lVpDtnvll~~~d---------~le~~~~~~VII~qTVleev~~ 105 (254)
+++||||++..+. .|+...-..++|+..|+-|+-.
T Consensus 2 ~llDTnvli~~~~~~~~~~~~~~l~~~~~~~~~is~~~~~El~~ 45 (139)
T 2h1c_A 2 ILLDTNVISEPLRPQPNERVVAWLDSLILEDVYLSAITVAELRL 45 (139)
T ss_dssp EEECHHHHTGGGSSSCCHHHHHHHHHSCGGGEEEEHHHHHHHHH
T ss_pred EeeehHHHHHHHcCCCCHHHHHHHHhCCcccEEeeHHHHHHHHH
Confidence 4679999998764 1221112468889888888763
No 12
>1v8p_A Hypothetical protein PAE2754; PIN-domain, tetramer, structural genomics, unknown function; 2.52A {Pyrobaculum aerophilum} SCOP: c.120.1.1 PDB: 1v8o_A
Probab=33.92 E-value=31 Score=27.26 Aligned_cols=111 Identities=16% Similarity=0.167 Sum_probs=57.4
Q ss_pred EEechHHHhhch----hhccCCCCCceeeeHHHHHHHhcC----------ChhHHHH-HHHHhcCCCCcEEEEeCCcccc
Q psy4844 71 LLLDTNIILEQI----DILEEPTLCNVILVQTILQEVKHR----------SSSVYKR-LKDLISNPSRKFYVFVNEHHYE 135 (254)
Q Consensus 71 lVpDtnvll~~~----d~le~~~~~~VII~qTVleev~~r----------s~~~y~R-Lr~li~~~~~~~~vF~Ne~~~~ 135 (254)
+++|||+++..+ ++++. ...+++|..++-|+-+- +.....+ +++++.. +-+..-+....
T Consensus 30 ivvDTSvlv~~l~~~~~~l~~--~~~~~ip~l~~~Ev~~vL~r~~r~~~l~~~~a~~~l~~ll~~----l~v~~~~~~~~ 103 (158)
T 1v8p_A 30 YLVDASALYALAAHYDKWIKH--REKLAILHLTIYEAGNALWKEARLGRVDWAAASRHLKKVLSS----FKVLEDPPLDE 103 (158)
T ss_dssp EEECHHHHHHHTTCHHHHGGG--GGGEEECHHHHHHHHHHHHHHHHTTCTTHHHHHHHHHHHHHT----SEECCCCCHHH
T ss_pred EEeeHHHHHHHHHhhHHHHhh--cCCEEeHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhh----CeEEeCcHHHH
Confidence 788999999888 33322 35688999999997631 2222332 3333321 11111110000
Q ss_pred ccccCCCCCCcCCcccHHHHHHHHHHHHHhCcCceEEEEeCChhhHHHHHhcCcceeeHHHHHHhC
Q psy4844 136 TYVEQEPGESVNDRNDRALRRVATWYEEHLESAVRVILLSEDVRNRDLATQSGLLTSSIEGYISTL 201 (254)
Q Consensus 136 T~v~r~~~es~~drndr~I~~aa~wY~~Hl~~~~~VvlvT~D~~~~~ka~~~gi~~~s~~eYv~~~ 201 (254)
.. + ...+..-.--|-.++++|.- + +. .|+|.|......|++ +.++.||++.+
T Consensus 104 A~-~-la~~~~Ls~yDA~~lAlA~~----~--g~--~L~T~D~~L~~~a~~----~~~~~~~l~~~ 155 (158)
T 1v8p_A 104 VL-R-VAVERGLTFYDASYAYVAES----S--GL--VLVTQDRELLAKTKG----AIDVETLLVRL 155 (158)
T ss_dssp HH-H-HHHHHTCCHHHHHHHHHHHH----T--TC--EEECSCHHHHHHSTT----CBCHHHHHHHH
T ss_pred HH-H-HHHHHCcCHHHHHHHHHHHH----h--CC--eEEeCCHHHHHHHHh----ccCHHHHHHHH
Confidence 00 0 00000011223344444322 1 23 469999998888766 78899998764
No 13
>3tnd_A TRNA(FMet)-specific endonuclease VAPC; PIN domain, spovt/ABRB-like domain, ribonuclease, DNA-bindin translation; 2.70A {Shigella flexneri}
Probab=28.37 E-value=34 Score=25.21 Aligned_cols=48 Identities=21% Similarity=0.261 Sum_probs=29.6
Q ss_pred EEechHHHhhchhh--------ccCCCCCceeeeHHHHHHHhc---CC-h--hHHHHHHHHhc
Q psy4844 71 LLLDTNIILEQIDI--------LEEPTLCNVILVQTILQEVKH---RS-S--SVYKRLKDLIS 119 (254)
Q Consensus 71 lVpDtnvll~~~d~--------le~~~~~~VII~qTVleev~~---rs-~--~~y~RLr~li~ 119 (254)
+++||||++..+.- ++... ..++|+.-++-|+-. +. . .....+++++.
T Consensus 4 ~llDTnvli~~~~~~~~~~~~~l~~~~-~~~~iS~i~~~El~~~~~~~~~~~~~~~~l~~~l~ 65 (132)
T 3tnd_A 4 FMLDTNICIFTIKNKPASVRERFNLNQ-GKMCISSVTLMELIYGAEKSQMPERNLAVIEGFVS 65 (132)
T ss_dssp EEECHHHHHHHHHHCCHHHHHHHHHHT-TSEEEEHHHHHHHHHHHHTSSCHHHHHHHHHHHHH
T ss_pred eeeeHHHHHHHHcCCcHHHHHHHHhcC-CCEEeeHHHHHHHHHHHHhcCcHHHHHHHHHHHHH
Confidence 46799999976531 22212 568888888888763 11 1 23455666663
No 14
>2ftc_A Mitochondrial ribosomal protein L1; mitochondrial ribosome, large ribosomal subunit, ribosomal R ribosome; 12.10A {Bos taurus}
Probab=27.19 E-value=47 Score=27.25 Aligned_cols=34 Identities=15% Similarity=0.240 Sum_probs=29.7
Q ss_pred ceEEEEeCChhhHHHHHhcCcceeeHHHHHHhCC
Q psy4844 169 VRVILLSEDVRNRDLATQSGLLTSSIEGYISTLS 202 (254)
Q Consensus 169 ~~VvlvT~D~~~~~ka~~~gi~~~s~~eYv~~~~ 202 (254)
.+|++++++.+..+.|++.|..++..+|+++.+.
T Consensus 33 ~~V~Vfa~~~~~~~~Ak~aGad~vg~~dLi~ki~ 66 (189)
T 2ftc_A 33 NKVAVFTENASEVKIAEENGAAFAGGTSLIQKIW 66 (189)
T ss_pred CEEEEEeCChhHHHHHHHcCCCCcCHHHHHHHHH
Confidence 4899999997667899999999999999988764
No 15
>1w8i_A Putative VAPC ribonuclease AF_1683; structural genomics, unknown function, hypothetical protein, PSI, protein structure initiative, MCSG; 2.10A {Archaeoglobus fulgidus} SCOP: c.120.1.1
Probab=26.32 E-value=37 Score=26.06 Aligned_cols=120 Identities=14% Similarity=0.061 Sum_probs=57.8
Q ss_pred EEechHHHhhchhh-----------cc-CC--CCCceeeeHHHHHHHhc----CChhHHHHHHHHhcCCCCcEEEEe-CC
Q psy4844 71 LLLDTNIILEQIDI-----------LE-EP--TLCNVILVQTILQEVKH----RSSSVYKRLKDLISNPSRKFYVFV-NE 131 (254)
Q Consensus 71 lVpDtnvll~~~d~-----------le-~~--~~~~VII~qTVleev~~----rs~~~y~RLr~li~~~~~~~~vF~-Ne 131 (254)
+++||||++..+.- ++ .- .-..++++..|+-|+-. +......-+..++.. ..+-+.. ++
T Consensus 3 i~lDTnvli~~l~~~~~~~~~a~~~l~~~~~~~~~~~~is~~vl~E~~~~l~~~~~~~~~~l~~l~~~--~~~~v~~~~~ 80 (156)
T 1w8i_A 3 ALIDTGIFFGFYSLKDVHHMDSVAIVVHAVEGKWGRLFVTNHILDETLTLLKYKKLPADKFLEGFVES--GVLNIIYTDD 80 (156)
T ss_dssp EEECHHHHHHHHCTTSTTHHHHHHHHHHHHTTTTSEEEEEHHHHHHHHHHHHHTTCCHHHHHHHHTTT--SSSEEECCCH
T ss_pred EEEEhHHHHHHHcCCcHhHHHHHHHHHHHHhcCCCcEEecHHHHHHHHHHHHhhHHHHHHHHHHHhhC--CCeEEEeCCH
Confidence 57899999887642 22 11 02458889999988753 111222224445432 2233322 22
Q ss_pred ccccccc--cC-CCCCCcCCcccHHHHHHHHHHHHHhCcCceEEEEeCChhhHHH-HHhcCcceeeHHHHHHh
Q psy4844 132 HHYETYV--EQ-EPGESVNDRNDRALRRVATWYEEHLESAVRVILLSEDVRNRDL-ATQSGLLTSSIEGYIST 200 (254)
Q Consensus 132 ~~~~T~v--~r-~~~es~~drndr~I~~aa~wY~~Hl~~~~~VvlvT~D~~~~~k-a~~~gi~~~s~~eYv~~ 200 (254)
.....+. .+ .-+....+-.|-.|.++|.-+ +. .|+|.|.+.... ..-.-+++++.+||+.-
T Consensus 81 ~~~~~A~~l~~~~~~~~~l~~~Dali~A~A~~~------g~--~l~T~D~dF~~~~~gi~~i~~~~p~~~~~~ 145 (156)
T 1w8i_A 81 EVERKALEVFKARVYEKGFSYTDAISEVVAEEL------KL--KLISYDSRFSLPTIGRDYWKSLDESERKRI 145 (156)
T ss_dssp HHHHHHHHHHHHTTTSTTCCHHHHHHHHHHHHH------TC--EEECSCTTCSSCEECTTTTTTSCHHHHHHH
T ss_pred HHHHHHHHHHHHHhccCCCCHhHHHHHHHHHHc------CC--EEEEeCcccCcccCCCeecCCCChHHHHHH
Confidence 1111110 01 111123455677777776433 22 688988654320 11112456666666653
No 16
>3zvk_A VAPC2, toxin of toxin-antitoxin system; antitoxin-toxin-DNA complex, protein-DNA complex; HET: DNA MES; 2.50A {Rickettsia felis}
Probab=25.68 E-value=34 Score=25.30 Aligned_cols=95 Identities=19% Similarity=0.243 Sum_probs=49.8
Q ss_pred EEechHHHhhchhh--------ccCCCC-CceeeeHHHHHHHhc-----CCh-hHHHHHHHHhcCCCCcEEEEe-CCccc
Q psy4844 71 LLLDTNIILEQIDI--------LEEPTL-CNVILVQTILQEVKH-----RSS-SVYKRLKDLISNPSRKFYVFV-NEHHY 134 (254)
Q Consensus 71 lVpDtnvll~~~d~--------le~~~~-~~VII~qTVleev~~-----rs~-~~y~RLr~li~~~~~~~~vF~-Ne~~~ 134 (254)
+++||||++..+.- |+.... ..+.|+.-++-|+-. +.. .....+++++. .|-+.. ++...
T Consensus 3 ~llDTnvli~~~~~~~~~~~~~l~~~~~~~~~~is~i~~~El~~~~~~~~~~~~~~~~l~~~l~----~~~il~~~~~~~ 78 (134)
T 3zvk_A 3 YMLGTNICVYAINKHPDSYYNNLELLAKNNTIAISSIVLAELQYGVSKSKKKEQNQSKLDIFLS----RLEIIDFSAKCT 78 (134)
T ss_dssp EEECHHHHHHHHHHCCHHHHHHHHHHHTTSEEEEEHHHHHHHHHHHHHSSCHHHHHHHHHHHHT----TSEEECBCHHHH
T ss_pred EEeeHHHHHHHHcCCcHHHHHHHHhcCcCCcEEeeheeHHHHHHHHHhcCCHHHHHHHHHHHHh----cCceecCCHHHH
Confidence 46799999986631 211111 468888888888763 111 23455777774 232222 22221
Q ss_pred ccccc-----CCCCCCcCCcccHHHHHHHHHHHHHhCcCceEEEEeCCh
Q psy4844 135 ETYVE-----QEPGESVNDRNDRALRRVATWYEEHLESAVRVILLSEDV 178 (254)
Q Consensus 135 ~T~v~-----r~~~es~~drndr~I~~aa~wY~~Hl~~~~~VvlvT~D~ 178 (254)
..+.. +..| ...+-.|..|.++|.-+ + ..|||.|.
T Consensus 79 ~~a~~l~~~~~~~g-~~~~~~D~lIaA~A~~~------~--~~lvT~d~ 118 (134)
T 3zvk_A 79 FYYGELRTELEQKG-LIIGNNDLLIASHAIAE------N--ATLVTNNI 118 (134)
T ss_dssp HHHHHHHHHHHHTT-CCCCHHHHHHHHHHHHH------T--CEEEESST
T ss_pred HHHHHHHHHHHHcC-CCCCccHHHHHHHHHHC------C--CEEEECCH
Confidence 11110 0011 12356788888877532 2 25788883
No 17
>1fiz_L Beta-acrosin light chain; anti-parallel beta-barrel, hydrolase; HET: NDG FUL BMA PBZ; 2.90A {Sus scrofa} SCOP: b.47.1.2
Probab=25.09 E-value=19 Score=20.24 Aligned_cols=9 Identities=33% Similarity=0.589 Sum_probs=6.0
Q ss_pred CCcCcCCCc
Q psy4844 24 DDLSCGSEL 32 (254)
Q Consensus 24 dDI~Cg~~~ 32 (254)
-|+|||.+.
T Consensus 6 cdgpCGlrf 14 (26)
T 1fiz_L 6 CDGPCGLRF 14 (26)
T ss_pred cccccccee
Confidence 378888653
No 18
>3kwm_A Ribose-5-phosphate isomerase A; structural genomics, IDP02119, center for structu genomics of infectious diseases, csgid; 2.32A {Francisella tularensis subsp}
Probab=23.06 E-value=1.2e+02 Score=25.69 Aligned_cols=41 Identities=10% Similarity=0.028 Sum_probs=32.1
Q ss_pred HHHHHHHHhCcC-ceEEE-EeCChhhHHHHHhcCcceeeHHHH
Q psy4844 157 VATWYEEHLESA-VRVIL-LSEDVRNRDLATQSGLLTSSIEGY 197 (254)
Q Consensus 157 aa~wY~~Hl~~~-~~Vvl-vT~D~~~~~ka~~~gi~~~s~~eY 197 (254)
++.|+.++|+.. .++.. ||++......+.+.|+++.++.+.
T Consensus 37 T~~~~i~~L~~~~~~itv~VtnS~~~a~~l~~~gi~l~~l~~~ 79 (224)
T 3kwm_A 37 TVGFLIEELVNYRDKIKTVVSSSEDSTRKLKALGFDVVDLNYA 79 (224)
T ss_dssp HHHHHHHHGGGCTTTEEEEEESCHHHHHHHHHTTCCBCCHHHH
T ss_pred HHHHHHHHHHhhcCceEEEECCcHHHHHHHHHcCCeEEecCcc
Confidence 455666677533 36777 999999999999999999998874
No 19
>1fiw_L Beta-acrosin light chain; anti-parallel beta-barrel, hydrolase; HET: NAG FUL BMA MAN PBZ; 2.10A {Ovis aries} SCOP: b.47.1.2
Probab=22.83 E-value=23 Score=19.88 Aligned_cols=9 Identities=33% Similarity=0.630 Sum_probs=6.3
Q ss_pred CCcCcCCCc
Q psy4844 24 DDLSCGSEL 32 (254)
Q Consensus 24 dDI~Cg~~~ 32 (254)
-|+|||.+.
T Consensus 5 cdgpCGlrf 13 (26)
T 1fiw_L 5 CDGPCGVRF 13 (26)
T ss_pred cccccCcee
Confidence 378888654
No 20
>2pjm_A Ribose-5-phosphate isomerase A; 3D-structure, structural genomics, pentose phosphate pathway, carbon fixation, NPPSFA; 1.78A {Methanocaldococcus jannaschii} PDB: 3ixq_A*
Probab=20.38 E-value=38 Score=28.76 Aligned_cols=29 Identities=17% Similarity=0.267 Sum_probs=24.9
Q ss_pred ceEEEEeCChhhHHHHHhcCcceeeHHHH
Q psy4844 169 VRVILLSEDVRNRDLATQSGLLTSSIEGY 197 (254)
Q Consensus 169 ~~VvlvT~D~~~~~ka~~~gi~~~s~~eY 197 (254)
.++..||++......+.+.|+++.++.++
T Consensus 48 l~itvVtnS~~~a~~l~~~gi~v~~l~~~ 76 (226)
T 2pjm_A 48 LTVFGIPTSFEAKMLAMQYEIPLVTLDEY 76 (226)
T ss_dssp CCCEEEESSHHHHHHHHHTTCCBCCTTTC
T ss_pred CcEEEEeCcHHHHHHHHhcCCeEEeeccc
Confidence 47889999999999999999998877654
Done!