Query psy4844
Match_columns 254
No_of_seqs 135 out of 342
Neff 6.5
Searched_HMMs 13730
Date Fri Aug 16 19:11:01 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy4844.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/4844hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1o4wa_ c.120.1.1 (A:) Hypothe 97.9 2.3E-06 1.7E-10 65.7 3.1 99 69-195 3-115 (125)
2 d1v96a1 c.120.1.1 (A:2-149) Hy 50.2 6.3 0.00046 29.2 3.6 46 148-201 94-139 (148)
3 d2fe1a1 c.120.1.1 (A:1-130) Co 44.0 5.3 0.00039 27.7 2.1 32 71-104 3-44 (130)
4 d2r25b1 c.23.1.1 (B:1087-1214) 40.2 23 0.0017 24.8 5.4 36 155-190 67-104 (128)
5 d1i3ca_ c.23.1.1 (A:) Response 32.8 30 0.0022 24.6 5.0 36 155-190 72-110 (144)
6 d2h1ca1 c.120.1.1 (A:1-138) Tr 32.7 16 0.0012 25.5 3.3 34 71-104 2-44 (138)
7 d1dz3a_ c.23.1.1 (A:) Sporulat 30.9 44 0.0032 22.9 5.6 37 155-191 63-101 (123)
8 d1ny5a1 c.23.1.1 (A:1-137) Tra 29.1 44 0.0032 23.4 5.4 35 155-190 60-96 (137)
9 d1qkka_ c.23.1.1 (A:) Transcri 27.1 42 0.0031 23.6 4.9 35 155-190 60-96 (140)
10 d1k68a_ c.23.1.1 (A:) Response 27.0 41 0.003 23.7 4.8 36 155-190 71-109 (140)
11 d1peya_ c.23.1.1 (A:) Sporulat 25.9 60 0.0044 22.0 5.5 34 156-190 62-97 (119)
12 d2ayxa1 c.23.1.1 (A:817-949) S 25.3 53 0.0039 22.8 5.2 35 155-190 68-104 (133)
13 d1krwa_ c.23.1.1 (A:) NTRC rec 25.0 34 0.0025 23.5 3.9 34 156-190 64-99 (123)
14 d1p2fa2 c.23.1.1 (A:1-120) Res 23.9 60 0.0043 22.0 5.1 35 155-190 59-95 (120)
15 d1k66a_ c.23.1.1 (A:) Response 23.1 35 0.0025 24.4 3.8 37 155-191 78-117 (149)
16 d1u0sy_ c.23.1.1 (Y:) CheY pro 21.6 73 0.0053 21.5 5.2 34 156-190 63-98 (118)
17 d1dbwa_ c.23.1.1 (A:) Transcri 21.5 69 0.005 21.8 5.1 35 155-190 63-99 (123)
No 1
>d1o4wa_ c.120.1.1 (A:) Hypothetical protein AF0591 {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}
Probab=97.91 E-value=2.3e-06 Score=65.69 Aligned_cols=99 Identities=17% Similarity=0.285 Sum_probs=63.3
Q ss_pred eEEEechHHHh----hchhhccC---CCCCceeeeHHHHHHHhcC---Chh---HHHH-HHHHhcCCCCcEEEEeCCccc
Q psy4844 69 HYLLLDTNIIL----EQIDILEE---PTLCNVILVQTILQEVKHR---SSS---VYKR-LKDLISNPSRKFYVFVNEHHY 134 (254)
Q Consensus 69 ~~lVpDtnvll----~~~d~le~---~~~~~VII~qTVleev~~r---s~~---~y~R-Lr~li~~~~~~~~vF~Ne~~~ 134 (254)
..+|+|||+++ +-+|+++. .....++||..|++|++.- +.. ...+ ....+.. +.
T Consensus 3 ~~~llDtn~l~~~~~~~id~~~~l~~~~~~~~~ip~~Vi~EL~~L~~~~~~~~~~~~~~~l~~~~~------------~~ 70 (125)
T d1o4wa_ 3 RCAVVDTNVLMYVYLNKADVVGQLREFGFSRFLITASVKRELEKLEMSLRGKEKVAARFALKLLEH------------FE 70 (125)
T ss_dssp EEEEECHHHHHHHHHHTCCHHHHHHHTTEEEEEEEHHHHHHHHHHHHHCCHHHHHHHHHHHHHHTT------------SE
T ss_pred ceEEEecHHHHHHHHcCCcHHHHHHhhcCceEEecHHHHHHHHHHHhcccHHHHHHHHHHHHHHHh------------CC
Confidence 46789999998 45556543 1234589999999999952 111 1111 2223321 10
Q ss_pred cccccCCCCCCcCCcccHHHHHHHHHHHHHhCcCceEEEEeCChhhHHHHHhcCcceeeHH
Q psy4844 135 ETYVEQEPGESVNDRNDRALRRVATWYEEHLESAVRVILLSEDVRNRDLATQSGLLTSSIE 195 (254)
Q Consensus 135 ~T~v~r~~~es~~drndr~I~~aa~wY~~Hl~~~~~VvlvT~D~~~~~ka~~~gi~~~s~~ 195 (254)
+ .......|..|+..|.- | +++++|+|.+++.+|+..|++++++.
T Consensus 71 -~-------~~~~~~~Dd~il~~a~~---~-----~~iv~T~D~~Lr~~~~~~GVpvi~l~ 115 (125)
T d1o4wa_ 71 -V-------VETESEGDPSLIEAAEK---Y-----GCILITNDKELKRKAKQRGIPVGYLK 115 (125)
T ss_dssp -E-------ECCSSCSHHHHHHHHHH---H-----TCEEECCCHHHHHHHHHTTCCEECCC
T ss_pred -C-------CCCCCcHHHHHHHHHhh---C-----CeEEEecCHHHHHHHHHcCCcEEEEe
Confidence 0 01123457888887742 1 26888999999999999999998765
No 2
>d1v96a1 c.120.1.1 (A:2-149) Hypothetical protein PH0500 {Pyrococcus horikoshii [TaxId: 53953]}
Probab=50.18 E-value=6.3 Score=29.19 Aligned_cols=46 Identities=20% Similarity=0.328 Sum_probs=34.5
Q ss_pred CcccHHHHHHHHHHHHHhCcCceEEEEeCChhhHHHHHhcCcceeeHHHHHHhC
Q psy4844 148 DRNDRALRRVATWYEEHLESAVRVILLSEDVRNRDLATQSGLLTSSIEGYISTL 201 (254)
Q Consensus 148 drndr~I~~aa~wY~~Hl~~~~~VvlvT~D~~~~~ka~~~gi~~~s~~eYv~~~ 201 (254)
+-+|-.|.++|.-+ ...|||+|..-.+..+..|+.++++.+|++..
T Consensus 94 ~~~D~lIAAtAi~~--------~~~LVT~n~kdF~~i~~~Gl~vi~~~~~l~~~ 139 (148)
T d1v96a1 94 DMEDIITATTAIYT--------NSLLVTDDPKRYEPIRRFGLDTMPLDKFIKEV 139 (148)
T ss_dssp CHHHHHHHHHHHHH--------TCEEEESCHHHHGGGGGGTCCEEEHHHHHHHH
T ss_pred ChhHHHHHHHHHHc--------CCEEEeCCHHHhhHHHHCCceEecHHHHHHHH
Confidence 34566665555332 13799999988888888999999999999874
No 3
>d2fe1a1 c.120.1.1 (A:1-130) Conserved hypothetical protein PAE0151 {Pyrobaculum aerophilum [TaxId: 13773]}
Probab=43.97 E-value=5.3 Score=27.66 Aligned_cols=32 Identities=19% Similarity=0.139 Sum_probs=22.7
Q ss_pred EEechHHHhhchhhccCC----------CCCceeeeHHHHHHHh
Q psy4844 71 LLLDTNIILEQIDILEEP----------TLCNVILVQTILQEVK 104 (254)
Q Consensus 71 lVpDtnvll~~~d~le~~----------~~~~VII~qTVleev~ 104 (254)
+++||||++..+. .++ ....+++|..++.|+.
T Consensus 3 ivlDTnvli~~~~--~~~~~~~~~~~~~~~~~~~i~~~~~~E~~ 44 (130)
T d2fe1a1 3 LVVDASAIAALYV--PEERSEQAERAVSQAQELHTLDLAAYEVA 44 (130)
T ss_dssp EEECHHHHHTTSS--SCCCCHHHHHHHHHCSEEEEEHHHHHHHH
T ss_pred EEEehHHHHHHHh--CCccHHHHHHHHhhcCCEEecHHHHHHHH
Confidence 5689999996541 111 2346899999999985
No 4
>d2r25b1 c.23.1.1 (B:1087-1214) Response regulator Sin1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=40.18 E-value=23 Score=24.81 Aligned_cols=36 Identities=17% Similarity=0.146 Sum_probs=26.9
Q ss_pred HHHHHHHHHHhCcCceEEEEeC--ChhhHHHHHhcCcc
Q psy4844 155 RRVATWYEEHLESAVRVILLSE--DVRNRDLATQSGLL 190 (254)
Q Consensus 155 ~~aa~wY~~Hl~~~~~VvlvT~--D~~~~~ka~~~gi~ 190 (254)
..++.+..++.+...+||++|. +...+.+|.+.|..
T Consensus 67 ~el~~~ir~~~~~~~piI~lT~~~~~~~~~~~~~~G~~ 104 (128)
T d2r25b1 67 LLSTKMIRRDLGYTSPIVALTAFADDSNIKECLESGMN 104 (128)
T ss_dssp HHHHHHHHHHSCCCSCEEEEESCCSHHHHHHHHHTTCS
T ss_pred HHHHHHHHHccCCCCeEEEEECCCCHHHHHHHHHcCCC
Confidence 4566777776655688999984 56778888888876
No 5
>d1i3ca_ c.23.1.1 (A:) Response regulator for cyanobacterial phytochrome {Synechocystis sp. PCC 6803, RCP1 [TaxId: 1148]}
Probab=32.82 E-value=30 Score=24.63 Aligned_cols=36 Identities=11% Similarity=0.138 Sum_probs=26.5
Q ss_pred HHHHHHHHHHhC-cCceEEEEe--CChhhHHHHHhcCcc
Q psy4844 155 RRVATWYEEHLE-SAVRVILLS--EDVRNRDLATQSGLL 190 (254)
Q Consensus 155 ~~aa~wY~~Hl~-~~~~VvlvT--~D~~~~~ka~~~gi~ 190 (254)
+..+.+.+++-. ..++||++| .|...+.+|.+.|+.
T Consensus 72 ~el~~~ir~~~~~~~iPvi~lT~~~~~~~~~~a~~~Ga~ 110 (144)
T d1i3ca_ 72 REVLAEIKQNPDLKRIPVVVLTTSHNEDDVIASYELHVN 110 (144)
T ss_dssp HHHHHHHHHCTTTTTSCEEEEESCCCHHHHHHHHHTTCS
T ss_pred hHHHHHHHhCcccCCCeEEEEECCCCHHHHHHHHHCCCC
Confidence 445667776532 368899998 567888899999976
No 6
>d2h1ca1 c.120.1.1 (A:1-138) Trafficking protein B {Neisseria gonorrhoeae [TaxId: 485]}
Probab=32.70 E-value=16 Score=25.46 Aligned_cols=34 Identities=35% Similarity=0.559 Sum_probs=21.5
Q ss_pred EEechHHHhhchh------h---ccCCCCCceeeeHHHHHHHh
Q psy4844 71 LLLDTNIILEQID------I---LEEPTLCNVILVQTILQEVK 104 (254)
Q Consensus 71 lVpDtnvll~~~d------~---le~~~~~~VII~qTVleev~ 104 (254)
+++||||+++.+. + ++.-....+.|+.-++-|+.
T Consensus 2 iLlDTnvli~~~r~~~~~~v~~~l~~~~~~~~~iS~it~~El~ 44 (138)
T d2h1ca1 2 ILLDTNVISEPLRPQPNERVVAWLDSLILEDVYLSAITVAELR 44 (138)
T ss_dssp EEECHHHHTGGGSSSCCHHHHHHHHHSCGGGEEEEHHHHHHHH
T ss_pred EEEecHHHHHHHccCCCHHHHHHHHhcCccceeecHHHHHHHH
Confidence 4679999997542 1 11112235778888888875
No 7
>d1dz3a_ c.23.1.1 (A:) Sporulation response regulator Spo0A {Bacillus stearothermophilus [TaxId: 1422]}
Probab=30.94 E-value=44 Score=22.86 Aligned_cols=37 Identities=19% Similarity=0.124 Sum_probs=26.0
Q ss_pred HHHHHHHHHHhCcCceEEEEeC--ChhhHHHHHhcCcce
Q psy4844 155 RRVATWYEEHLESAVRVILLSE--DVRNRDLATQSGLLT 191 (254)
Q Consensus 155 ~~aa~wY~~Hl~~~~~VvlvT~--D~~~~~ka~~~gi~~ 191 (254)
+.++.+.+++.+..++||++|. +.....+|.+.|...
T Consensus 63 ~e~~~~ir~~~~~~~~ii~~t~~~~~~~~~~a~~~Ga~~ 101 (123)
T d1dz3a_ 63 LAVLERIRAGFEHQPNVIMLTAFGQEDVTKKAVELGASY 101 (123)
T ss_dssp HHHHHHHHHHCSSCCEEEEEEETTCHHHHHHHHHTTCEE
T ss_pred HHHHHHHHhcCCCCCeEEEEECcCCHHHHHHHHHCCCCE
Confidence 4566777777664567888874 456677888888774
No 8
>d1ny5a1 c.23.1.1 (A:1-137) Transcriptional activator sigm54 (NtrC1), N-terminal domain {Aquifex aeolicus [TaxId: 63363]}
Probab=29.14 E-value=44 Score=23.36 Aligned_cols=35 Identities=17% Similarity=0.353 Sum_probs=26.2
Q ss_pred HHHHHHHHHHhCcCceEEEEeC--ChhhHHHHHhcCcc
Q psy4844 155 RRVATWYEEHLESAVRVILLSE--DVRNRDLATQSGLL 190 (254)
Q Consensus 155 ~~aa~wY~~Hl~~~~~VvlvT~--D~~~~~ka~~~gi~ 190 (254)
...+.+..++.+ ..+||++|. |.+...+|...|..
T Consensus 60 ~e~~~~lr~~~~-~~piI~lT~~~~~~~~~~a~~~Ga~ 96 (137)
T d1ny5a1 60 LEILKWIKERSP-ETEVIVITGHGTIKTAVEAMKMGAY 96 (137)
T ss_dssp HHHHHHHHHHCT-TSEEEEEEETTCHHHHHHHHTTTCC
T ss_pred HHHHHHHHHhCC-CCCEEEEECCCCHHHHHHHHHcCCC
Confidence 356667777765 799999994 56777888888876
No 9
>d1qkka_ c.23.1.1 (A:) Transcriptional regulatory protein DctD, receiver domain {Sinorhizobium meliloti [TaxId: 382]}
Probab=27.13 E-value=42 Score=23.61 Aligned_cols=35 Identities=17% Similarity=0.058 Sum_probs=25.6
Q ss_pred HHHHHHHHHHhCcCceEEEEeC--ChhhHHHHHhcCcc
Q psy4844 155 RRVATWYEEHLESAVRVILLSE--DVRNRDLATQSGLL 190 (254)
Q Consensus 155 ~~aa~wY~~Hl~~~~~VvlvT~--D~~~~~ka~~~gi~ 190 (254)
+..+.+..++.+ ..+||++|. |.+...+|.+.|..
T Consensus 60 ~el~~~lr~~~~-~~pvI~lT~~~~~~~~~~a~~~Ga~ 96 (140)
T d1qkka_ 60 LALFRKILALDP-DLPMILVTGHGDIPMAVQAIQDGAY 96 (140)
T ss_dssp HHHHHHHHHHCT-TSCEEEEECGGGHHHHHHHHHTTCC
T ss_pred HHHHHHHHHhCC-CCcEEEEECCCCHHHHHHHHHcCCC
Confidence 345566777665 799999995 55677788888876
No 10
>d1k68a_ c.23.1.1 (A:) Response regulator for cyanobacterial phytochrome {Calothrix sp. pcc 7601, RcpA [TaxId: 1188]}
Probab=26.99 E-value=41 Score=23.71 Aligned_cols=36 Identities=14% Similarity=0.069 Sum_probs=25.8
Q ss_pred HHHHHHHHHHhC-cCceEEEEeC--ChhhHHHHHhcCcc
Q psy4844 155 RRVATWYEEHLE-SAVRVILLSE--DVRNRDLATQSGLL 190 (254)
Q Consensus 155 ~~aa~wY~~Hl~-~~~~VvlvT~--D~~~~~ka~~~gi~ 190 (254)
+..+.+.+++-. ..++||++|. +...+.+|.+.|..
T Consensus 71 ~el~~~ir~~~~~~~iPvI~ls~~~~~~~~~~a~~~Ga~ 109 (140)
T d1k68a_ 71 REVLAEIKSDPTLKRIPVVVLSTSINEDDIFHSYDLHVN 109 (140)
T ss_dssp HHHHHHHHHSTTGGGSCEEEEESCCCHHHHHHHHHTTCS
T ss_pred hHHHHHHHhCcccCCCcEEEEeCCCCHHHHHHHHHCCCC
Confidence 455667766532 3588999984 66778888888876
No 11
>d1peya_ c.23.1.1 (A:) Sporulation response regulator Spo0F {Bacillus subtilis [TaxId: 1423]}
Probab=25.95 E-value=60 Score=22.01 Aligned_cols=34 Identities=18% Similarity=0.268 Sum_probs=24.3
Q ss_pred HHHHHHHHHhCcCceEEEEeC--ChhhHHHHHhcCcc
Q psy4844 156 RVATWYEEHLESAVRVILLSE--DVRNRDLATQSGLL 190 (254)
Q Consensus 156 ~aa~wY~~Hl~~~~~VvlvT~--D~~~~~ka~~~gi~ 190 (254)
..+.+..+..+ ..+||++|. +.+...+|.+.|..
T Consensus 62 el~~~lr~~~~-~~pvi~lt~~~~~~~~~~a~~~Ga~ 97 (119)
T d1peya_ 62 EILKRMKVIDE-NIRVIIMTAYGELDMIQESKELGAL 97 (119)
T ss_dssp HHHHHHHHHCT-TCEEEEEESSCCHHHHHHHHHTTCC
T ss_pred HHHHHHHHhCC-CCcEEEEecCCCHHHHHHHHHCCCC
Confidence 44455555544 789999994 66777888888876
No 12
>d2ayxa1 c.23.1.1 (A:817-949) Sensor kinase protein RcsC, C-terminal domain {Escherichia coli [TaxId: 562]}
Probab=25.28 E-value=53 Score=22.80 Aligned_cols=35 Identities=14% Similarity=0.108 Sum_probs=26.2
Q ss_pred HHHHHHHHHHhCcCceEEEEeC--ChhhHHHHHhcCcc
Q psy4844 155 RRVATWYEEHLESAVRVILLSE--DVRNRDLATQSGLL 190 (254)
Q Consensus 155 ~~aa~wY~~Hl~~~~~VvlvT~--D~~~~~ka~~~gi~ 190 (254)
...+.|.+++-+ ..+|+++|. +.+.+.+|.+.|..
T Consensus 68 ~el~~~ir~~~~-~~pii~lt~~~~~~~~~~~~~~G~~ 104 (133)
T d2ayxa1 68 YRLTQRIRQLGL-TLPVIGVTANALAEEKQRCLESGMD 104 (133)
T ss_dssp HHHHHHHHHHHC-CSCEEEEESSTTSHHHHHHHHCCCE
T ss_pred HHHHHHHHHhCC-CCCEEEEeccCCHHHHHHHHHcCCC
Confidence 456677777765 788999985 45777888888876
No 13
>d1krwa_ c.23.1.1 (A:) NTRC receiver domain {Salmonella typhimurium [TaxId: 90371]}
Probab=24.95 E-value=34 Score=23.53 Aligned_cols=34 Identities=18% Similarity=0.233 Sum_probs=24.2
Q ss_pred HHHHHHHHHhCcCceEEEEeC--ChhhHHHHHhcCcc
Q psy4844 156 RVATWYEEHLESAVRVILLSE--DVRNRDLATQSGLL 190 (254)
Q Consensus 156 ~aa~wY~~Hl~~~~~VvlvT~--D~~~~~ka~~~gi~ 190 (254)
..+.|..++.+ ..+||++|. +.+.+.+|.+.|..
T Consensus 64 el~~~l~~~~~-~~piI~~t~~~~~~~~~~a~~~Ga~ 99 (123)
T d1krwa_ 64 ALLKQIKQRHP-MLPVIIMTAHSDLDAAVSAYQQGAF 99 (123)
T ss_dssp HHHHHHHHHSS-SCCEEESCCCSCHHHHHHHHHHTEE
T ss_pred HHHHHHHHhCC-CCeEEEEecCCCHHHHHHHHHcCCC
Confidence 34566777665 789999985 45667778877865
No 14
>d1p2fa2 c.23.1.1 (A:1-120) Response regulator DrrB {Thermotoga maritima [TaxId: 2336]}
Probab=23.89 E-value=60 Score=22.05 Aligned_cols=35 Identities=20% Similarity=0.146 Sum_probs=26.4
Q ss_pred HHHHHHHHHHhCcCceEEEEe--CChhhHHHHHhcCcc
Q psy4844 155 RRVATWYEEHLESAVRVILLS--EDVRNRDLATQSGLL 190 (254)
Q Consensus 155 ~~aa~wY~~Hl~~~~~VvlvT--~D~~~~~ka~~~gi~ 190 (254)
...+.+..++-+ ..+||++| .+.+.+.+|.+.|..
T Consensus 59 ~~~~~~lr~~~~-~~~ii~it~~~~~~~~~~a~~~Ga~ 95 (120)
T d1p2fa2 59 YEICRMIKETRP-ETWVILLTLLSDDESVLKGFEAGAD 95 (120)
T ss_dssp HHHHHHHHHHCT-TSEEEEEESCCSHHHHHHHHHHTCS
T ss_pred hHHHHHHhhcCC-CCcEEEEecCCCHHHHHHHHHCCCC
Confidence 456667777664 78999998 566778888888876
No 15
>d1k66a_ c.23.1.1 (A:) Response regulator for cyanobacterial phytochrome {Calothrix sp. pcc 7601, RcpB [TaxId: 1188]}
Probab=23.12 E-value=35 Score=24.38 Aligned_cols=37 Identities=8% Similarity=0.223 Sum_probs=26.2
Q ss_pred HHHHHHHHHHhC-cCceEEEEe--CChhhHHHHHhcCcce
Q psy4844 155 RRVATWYEEHLE-SAVRVILLS--EDVRNRDLATQSGLLT 191 (254)
Q Consensus 155 ~~aa~wY~~Hl~-~~~~VvlvT--~D~~~~~ka~~~gi~~ 191 (254)
...+.|.+++-. ..++||++| .+...+.+|.+.|...
T Consensus 78 ~el~~~ir~~~~~~~ipiI~lT~~~~~~~~~~~~~~Ga~~ 117 (149)
T d1k66a_ 78 REVLQEIKQDEVLKKIPVVIMTTSSNPKDIEICYSYSISS 117 (149)
T ss_dssp HHHHHHHTTSTTGGGSCEEEEESCCCHHHHHHHHHTTCSE
T ss_pred HHHHHHHHhccccCCCeEEEEeCCCCHHHHHHHHHCCCCE
Confidence 456677765432 368899998 5667788888888763
No 16
>d1u0sy_ c.23.1.1 (Y:) CheY protein {Thermotoga maritima [TaxId: 2336]}
Probab=21.63 E-value=73 Score=21.46 Aligned_cols=34 Identities=12% Similarity=-0.060 Sum_probs=23.8
Q ss_pred HHHHHHHHHhCcCceEEEEe--CChhhHHHHHhcCcc
Q psy4844 156 RVATWYEEHLESAVRVILLS--EDVRNRDLATQSGLL 190 (254)
Q Consensus 156 ~aa~wY~~Hl~~~~~VvlvT--~D~~~~~ka~~~gi~ 190 (254)
..+....+..+ .++||++| ++.....+|.+.|..
T Consensus 63 e~~~~ir~~~~-~~pvi~ls~~~~~~~~~~a~~~Ga~ 98 (118)
T d1u0sy_ 63 DAIKEIMKIDP-NAKIIVCSAMGQQAMVIEAIKAGAK 98 (118)
T ss_dssp HHHHHHHHHCT-TCCEEEEECTTCHHHHHHHHHTTCC
T ss_pred HHHHHHHHhCC-CCcEEEEEccCCHHHHHHHHHcCCC
Confidence 34444455544 78999998 566777888888876
No 17
>d1dbwa_ c.23.1.1 (A:) Transcriptional regulatory protein FixJ, receiver domain {Rhizobium meliloti [TaxId: 382]}
Probab=21.55 E-value=69 Score=21.78 Aligned_cols=35 Identities=14% Similarity=0.106 Sum_probs=25.0
Q ss_pred HHHHHHHHHHhCcCceEEEEeC--ChhhHHHHHhcCcc
Q psy4844 155 RRVATWYEEHLESAVRVILLSE--DVRNRDLATQSGLL 190 (254)
Q Consensus 155 ~~aa~wY~~Hl~~~~~VvlvT~--D~~~~~ka~~~gi~ 190 (254)
+..+.+..++.+ ..+||++|. |.+...+|.+.|..
T Consensus 63 ~e~~~~lr~~~~-~~~iI~lt~~~~~~~~~~a~~~Ga~ 99 (123)
T d1dbwa_ 63 VELLRNLGDLKI-NIPSIVITGHGDVPMAVEAMKAGAV 99 (123)
T ss_dssp HHHHHHHHHTTC-CCCEEEEECTTCHHHHHHHHHTTCS
T ss_pred hHHHHHHHhcCC-CCeEEEEEeeCCHHHHHHHHHCCCC
Confidence 345566666654 789999994 56677788888866
Done!