RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy4844
         (254 letters)



>d2vnud3 b.40.4.5 (D:252-399) Exosome complex exonuclease RRP44
           {Saccharomyces cerevisiae [TaxId: 4932]}
          Length = 148

 Score = 30.4 bits (68), Expect = 0.10
 Identities = 8/25 (32%), Positives = 14/25 (56%)

Query: 224 DSLYPLHATPSEIHAGIKNQSLLQG 248
           D  +P + + + +  G+KN  L QG
Sbjct: 1   DFTFPEYYSTARVMGGLKNGVLYQG 25


>d2jbwa1 c.69.1.41 (A:8-367) 2,6-dihydropseudooxynicotine hydrolase
           {Arthrobacter nicotinovorans [TaxId: 29320]}
          Length = 360

 Score = 30.7 bits (68), Expect = 0.17
 Identities = 8/60 (13%), Positives = 18/60 (30%), Gaps = 11/60 (18%)

Query: 112 KRLKDLISNPSRKFYVFVNEHHYETYVEQEPGESVNDRNDRALRRVATWYEEHLESAVRV 171
             + +L+        V  +  H             ++   R    +A W  + L +  +V
Sbjct: 301 DTVLELVPAEHLNLVVEKDGDH-----------CCHNLGIRPRLEMADWLYDVLVAGKKV 349


>d1q2ha_ a.34.4.1 (A:) Adapter protein APS, dimerisation domain
           {Human (Homo sapiens) [TaxId: 9606]}
          Length = 63

 Score = 28.2 bits (63), Expect = 0.18
 Identities = 8/44 (18%), Positives = 16/44 (36%)

Query: 132 HHYETYVEQEPGESVNDRNDRALRRVATWYEEHLESAVRVILLS 175
           H +  ++   P     D      R  A  + +     VR +L++
Sbjct: 20  HKFCRFLRDNPAYDTPDAGASFSRHFAANFLDVFGEEVRRVLVA 63


>d1uyra2 c.14.1.4 (A:1815-2218) Acetyl-coenzyme A carboxylase
           {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
          Length = 404

 Score = 28.0 bits (62), Expect = 1.2
 Identities = 15/61 (24%), Positives = 27/61 (44%), Gaps = 7/61 (11%)

Query: 144 ESVNDRNDRALRRVATWYEEHLESAVRVILLSEDVRNRDLATQ-SGLLTSSIEGYISTLS 202
            SV+  +DR    VATW EE+ ++    +   + ++    A   +  + S  +  I  LS
Sbjct: 347 ASVDHEDDRQ---VATWIEENYKTLDDKL---KGLKLESFAQDLAKKIRSDHDNAIDGLS 400

Query: 203 N 203
            
Sbjct: 401 E 401


>d1lcla_ b.29.1.3 (A:) Charcot-Leyden crystal (CLC) protein {Human
           (Homo sapiens) [TaxId: 9606]}
          Length = 141

 Score = 26.4 bits (58), Expect = 2.1
 Identities = 9/30 (30%), Positives = 13/30 (43%)

Query: 118 ISNPSRKFYVFVNEHHYETYVEQEPGESVN 147
           IS    K+ V VN     T+  +   E+V 
Sbjct: 92  ISVLPDKYQVMVNGQSSYTFDHRIKPEAVK 121


>d1xhla_ c.2.1.2 (A:) Hypothetical protein F25D1.5 {Caenorhabditis
           elegans [TaxId: 6239]}
          Length = 274

 Score = 26.5 bits (58), Expect = 3.3
 Identities = 6/37 (16%), Positives = 12/37 (32%)

Query: 146 VNDRNDRALRRVATWYEEHLESAVRVILLSEDVRNRD 182
           +  RN+  L        +    A ++  +  DV    
Sbjct: 33  ITGRNEDRLEETKQQILKAGVPAEKINAVVADVTEAS 69


>d1xkqa_ c.2.1.2 (A:) Hypothetical protein R05D8.7 {Caenorhabditis
           elegans [TaxId: 6239]}
          Length = 272

 Score = 26.5 bits (58), Expect = 3.4
 Identities = 7/37 (18%), Positives = 12/37 (32%)

Query: 146 VNDRNDRALRRVATWYEEHLESAVRVILLSEDVRNRD 182
           +  R+   L        +   S  +V  +  DV   D
Sbjct: 34  ITGRSSERLEETRQIILKSGVSEKQVNSVVADVTTED 70


>d1hlca_ b.29.1.3 (A:) S-lac lectin, L-14-II {Human (Homo sapiens)
           [TaxId: 9606]}
          Length = 129

 Score = 24.8 bits (54), Expect = 7.5
 Identities = 6/30 (20%), Positives = 14/30 (46%)

Query: 118 ISNPSRKFYVFVNEHHYETYVEQEPGESVN 147
           ++  S KF V + + H  T+  +     ++
Sbjct: 83  VTFESDKFKVKLPDGHELTFPNRLGHSHLS 112


>d2gala_ b.29.1.3 (A:) Galectin-7 {Human (Homo sapiens) [TaxId:
           9606]}
          Length = 133

 Score = 24.9 bits (54), Expect = 7.6
 Identities = 5/24 (20%), Positives = 8/24 (33%)

Query: 124 KFYVFVNEHHYETYVEQEPGESVN 147
            F   V +  Y  +  + P   V 
Sbjct: 94  GFKAVVGDAQYHHFRHRLPLARVR 117


>d2vglb_ a.118.1.10 (B:) Adaptin beta subunit N-terminal fragment
           {Human (Homo sapiens) [TaxId: 9606]}
          Length = 579

 Score = 25.5 bits (55), Expect = 8.4
 Identities = 19/123 (15%), Positives = 48/123 (39%), Gaps = 15/123 (12%)

Query: 94  ILVQTILQEVKHRSSSVYKRLKDLISNPSRKFYVFVNEHHYETYVEQEPGESVNDRNDRA 153
            L+  I  +V +        ++D+              + YE+ +     E+++  ++  
Sbjct: 391 TLLDLIQTKVNYVVQEAIVVIRDIFRK---------YPNKYESIIAT-LCENLDSLDEPD 440

Query: 154 LRRVATW----YEEHLESAVRVI-LLSEDVRNRDLATQSGLLTSSIEGYISTLSNGEPLL 208
            R    W    Y E +++A  ++    E   +     Q  LLT+ ++ ++   S  + L+
Sbjct: 441 ARAAMIWIVGEYAERIDNADELLESFLEGFHDESTQVQLTLLTAIVKLFLKKPSETQELV 500

Query: 209 DKL 211
            ++
Sbjct: 501 QQV 503


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.316    0.132    0.370 

Gapped
Lambda     K      H
   0.267   0.0555    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 889,505
Number of extensions: 38618
Number of successful extensions: 111
Number of sequences better than 10.0: 1
Number of HSP's gapped: 111
Number of HSP's successfully gapped: 12
Length of query: 254
Length of database: 2,407,596
Length adjustment: 83
Effective length of query: 171
Effective length of database: 1,268,006
Effective search space: 216829026
Effective search space used: 216829026
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 52 (24.2 bits)