BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy4846
(279 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q9Y2L1|RRP44_HUMAN Exosome complex exonuclease RRP44 OS=Homo sapiens GN=DIS3 PE=1 SV=2
Length = 958
Score = 250 bits (639), Expect = 8e-66, Method: Compositional matrix adjust.
Identities = 133/282 (47%), Positives = 170/282 (60%), Gaps = 50/282 (17%)
Query: 2 DNAMLRRHPVPPPANFEPLLHAARRQGFELSVGTGKELATSLDAA--------------- 46
++A+LR+HP PPP+N+E L+ AAR + E+ T K LA SLD A
Sbjct: 684 EHALLRKHPAPPPSNYEILVKAARSRNLEIKTDTAKSLAESLDQAESPTFPYLNTLLRIL 743
Query: 47 -------AVYFSSGMLQQSDFHHYGLATPIYTHFTSPIRRYADIIVHRLLAACIGADATY 99
AVYF SGM +DFHHYGLA+PIYTHFTSPIRRYAD+IVHRLLA IGAD TY
Sbjct: 744 ATRCMMQAVYFCSGM--DNDFHHYGLASPIYTHFTSPIRRYADVIVHRLLAVAIGADCTY 801
Query: 100 PSLLDKKASTALCYNLNYRNRQAQYAGRASVALHTHLFFRSR-VQDEDGYVLYVRKNALQ 158
P L DK +C NLN+R++ AQYA RASVA HT LFF+S+ + E+ Y+L+VRKN
Sbjct: 802 PELTDKHKLADICKNLNFRHKMAQYAQRASVAFHTQLFFKSKGIVSEEAYILFVRKN--- 858
Query: 159 ILIPKSRVQDEDGYVLYVRKNALQILIPKYGLEGTLFL-RCDSPSVSWTYNEKEQSQSCG 217
A+ +LIPKYGLEGT+F D P+ Y+++ S
Sbjct: 859 ---------------------AIVVLIPKYGLEGTVFFEEKDKPNPQLIYDDEIPSLKIE 897
Query: 218 SVVFHSFDPVTVQLSLDRSNVQHEKLVLRLVRPVIEGFSVSS 259
VFH FD V V++ LD SN+QH+K+ + LV P I G S+ +
Sbjct: 898 DTVFHVFDKVKVKIMLDSSNLQHQKIRMSLVEPQIPGISIPT 939
>sp|Q9CSH3|RRP44_MOUSE Exosome complex exonuclease RRP44 OS=Mus musculus GN=Dis3 PE=2 SV=4
Length = 958
Score = 246 bits (628), Expect = 1e-64, Method: Compositional matrix adjust.
Identities = 130/280 (46%), Positives = 170/280 (60%), Gaps = 50/280 (17%)
Query: 2 DNAMLRRHPVPPPANFEPLLHAARRQGFELSVGTGKELATSLDAA--------------- 46
++A+LR+HP PPP+N++ L+ AA+ + ++ T K LA SLD A
Sbjct: 684 EHALLRKHPAPPPSNYDILVKAAKSKNLQIKTDTAKSLADSLDRAESPDFPYLNTLLRIL 743
Query: 47 -------AVYFSSGMLQQSDFHHYGLATPIYTHFTSPIRRYADIIVHRLLAACIGADATY 99
AVYF SGM +DFHHYGLA+PIYTHFTSPIRRYADIIVHRLLA IGAD TY
Sbjct: 744 ATRCMMQAVYFCSGM--DNDFHHYGLASPIYTHFTSPIRRYADIIVHRLLAVAIGADCTY 801
Query: 100 PSLLDKKASTALCYNLNYRNRQAQYAGRASVALHTHLFFRSR-VQDEDGYVLYVRKNALQ 158
P L DK + +C NLN+R++ AQYA RASVA HT LFF+S+ + E+ Y+L+VRKN
Sbjct: 802 PELTDKHKLSDICKNLNFRHKMAQYAQRASVAFHTQLFFKSKGIVSEEAYILFVRKN--- 858
Query: 159 ILIPKSRVQDEDGYVLYVRKNALQILIPKYGLEGTLFL-RCDSPSVSWTYNEKEQSQSCG 217
A+ +LIPKYGLEGT+F D P Y+++ S
Sbjct: 859 ---------------------AIVVLIPKYGLEGTVFFEEKDKPKPRLAYDDEIPSLRIE 897
Query: 218 SVVFHSFDPVTVQLSLDRSNVQHEKLVLRLVRPVIEGFSV 257
VFH FD V V+++LD SN+QH+K+ + LV P I G ++
Sbjct: 898 GTVFHVFDKVKVKITLDSSNLQHQKIRMALVEPQIPGINI 937
>sp|Q17632|RRP44_CAEEL Probable exosome complex exonuclease RRP44 OS=Caenorhabditis
elegans GN=dis-3 PE=3 SV=2
Length = 961
Score = 210 bits (534), Expect = 1e-53, Method: Compositional matrix adjust.
Identities = 113/278 (40%), Positives = 160/278 (57%), Gaps = 46/278 (16%)
Query: 2 DNAMLRRHPVPPPANFEPLLHAARRQGFELSVGTGKELATSLD----------------- 44
D A+LRRHPVP +++PL+ AAR +GFE+ V +GK LA SL+
Sbjct: 696 DCALLRRHPVPLKESYKPLVEAARHRGFEIIVESGKGLADSLNRCVDKKNPMLNRLLRML 755
Query: 45 -----AAAVYFSSGMLQQSDFHHYGLATPIYTHFTSPIRRYADIIVHRLLAACIGADATY 99
AVYFS+G + + H+GLA IYTHFTSPIRRYAD+IVHRLLAA IGAD
Sbjct: 756 TTRCMTQAVYFSAGTVPVPQYQHFGLACAIYTHFTSPIRRYADVIVHRLLAAAIGADDIQ 815
Query: 100 PSLLDKKASTALCYNLNYRNRQAQYAGRASVALHTHLFFRSRVQDEDGYVLYVRKNALQI 159
LL++ T +C N+NYR++QAQYAGRASV L+ +F+ +V+ +G+V+ VR N
Sbjct: 816 SGLLNQARCTKICTNINYRHKQAQYAGRASVQLNVVRYFKGKVETCEGFVMGVRNN---- 871
Query: 160 LIPKSRVQDEDGYVLYVRKNALQILIPKYGLEGTLFLRCDSPSVSWTYNEKEQSQSCGSV 219
+Q+ +PKYGLE + L+ + S + E+ + G V
Sbjct: 872 --------------------GIQVFVPKYGLESIIVLQTSAASGTTIDVEEMSVKVNGDV 911
Query: 220 VFHSFDPVTVQLSLDRSNVQHEKLVLRLVRPVIEGFSV 257
V +PVTV++S++ N Q ++ L+L++P I G SV
Sbjct: 912 VIKELEPVTVRISVNEKNQQRPRVELQLIKPAIPGLSV 949
>sp|P37202|DIS3_SCHPO Exosome complex exonuclease dis3 OS=Schizosaccharomyces pombe
(strain 972 / ATCC 24843) GN=dis3 PE=1 SV=1
Length = 970
Score = 143 bits (360), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 89/233 (38%), Positives = 116/233 (49%), Gaps = 51/233 (21%)
Query: 4 AMLRRHPVPPPANFEPLLHAARR-QGFELSVGTGKELATSLDA----------------- 45
A+LRRH PP NF+ L R +G L T K LA SLD
Sbjct: 715 AVLRRHAAPPLTNFDSLQDILRVCKGMHLKCDTSKSLAKSLDECVDPKEPYFNTLLRILT 774
Query: 46 -----AAVYFSSGMLQQSDFHHYGLATPIYTHFTSPIRRYADIIVHRLLAACIGADATYP 100
+A YF SG DF HYGLA+PIYTHFTSPIRRYAD++ HR LAA I + P
Sbjct: 775 TRCMLSAEYFCSGTFAPPDFRHYGLASPIYTHFTSPIRRYADVLAHRQLAAAIDYETINP 834
Query: 101 SLLDKKASTALCYNLNYRNRQAQYAGRASVALHTHLFFRSRVQDEDGYVLYVRKNALQIL 160
SL DK +C +NYR+R AQ AGRAS+ + + V +ED YV+ V KN
Sbjct: 835 SLSDKSRLIEICNGINYRHRMAQMAGRASIEYYVGQALKGGVAEEDAYVIKVFKN----- 889
Query: 161 IPKSRVQDEDGYVLYVRKNALQILIPKYGLEGTLFLRCDS----PSVSWTYNE 209
G+V++ I ++GLEG ++ + S P+V + +E
Sbjct: 890 ----------GFVVF---------IARFGLEGIVYTKSLSSVLEPNVEYVEDE 923
>sp|Q8C0S1|DI3L1_MOUSE DIS3-like exonuclease 1 OS=Mus musculus GN=Dis3l PE=2 SV=2
Length = 1053
Score = 140 bits (354), Expect = 7e-33, Method: Compositional matrix adjust.
Identities = 93/287 (32%), Positives = 137/287 (47%), Gaps = 60/287 (20%)
Query: 4 AMLRRHPVPPPANFEPLLHAARRQGFELSVGTGKELATSLDAA----------------- 46
A+LR+HP P F L A+ +GF + + K LA SLD+A
Sbjct: 704 ALLRQHPPPHQEFFSELRECAKAKGFFIDTRSNKTLADSLDSANDPKDPLVNKLLRSMAT 763
Query: 47 -----AVYFSSGMLQQSDFHHYGLATPIYTHFTSPIRRYADIIVHRLLAACIGADATY-- 99
A+YFS+G + +FHHYGLA YTHFTSPIRRY+DI+VHRLL A I D
Sbjct: 764 QAMSNALYFSTGSCAEEEFHHYGLALDKYTHFTSPIRRYSDIVVHRLLMAAISKDKKMEI 823
Query: 100 -PSLLDKKASTALCYNLNYRNRQAQYAGRASVALHTHLFFRSRVQDEDGYVLYVRKNALQ 158
+L K LC ++N RNR AQ + + S L ++F+ R + + +
Sbjct: 824 KENLFSNKNLEELCRHINNRNRAAQRSQKQSTELFQCMYFKDRDAETEERCI-------- 875
Query: 159 ILIPKSRVQDEDGYVLYVRKNALQILIPKYGLEGTLFLRC-DSPSVS--------WTYNE 209
DG + +R N + + IP++G++G +L+ DS +S W
Sbjct: 876 ----------ADGVIYSIRTNGVLVFIPRFGIKGAAYLKNKDSLVISCGPEGSSEWKPGS 925
Query: 210 KEQSQS--------CGSVVFHSFDPVTVQLSLDRSNVQHEKLVLRLV 248
++SQ+ SV FH FD VTV++S+ S + + L +V
Sbjct: 926 LQRSQNKIISTTAGGQSVTFHLFDHVTVRISVQASRCHSDTIRLEIV 972
>sp|A0JN80|DI3L1_BOVIN DIS3-like exonuclease 1 OS=Bos taurus GN=DIS3L PE=2 SV=2
Length = 1053
Score = 140 bits (354), Expect = 8e-33, Method: Compositional matrix adjust.
Identities = 92/287 (32%), Positives = 133/287 (46%), Gaps = 60/287 (20%)
Query: 4 AMLRRHPVPPPANFEPLLHAARRQGFELSVGTGKELATSLDAA----------------- 46
A+LRRHP P F L A+ +GF + + K LA SLD A
Sbjct: 704 ALLRRHPPPHQEFFSELRECAKAKGFFIDTRSNKALADSLDNANDPNDPIVNKLLRSMAT 763
Query: 47 -----AVYFSSGMLQQSDFHHYGLATPIYTHFTSPIRRYADIIVHRLLAACIGADATY-- 99
A+YFS+G + +FHHYGLA YTHFTSPIRRY+DIIVHRLL A I D
Sbjct: 764 QAMSNALYFSTGSCAEEEFHHYGLALDKYTHFTSPIRRYSDIIVHRLLMAAISKDKKMEI 823
Query: 100 -PSLLDKKASTALCYNLNYRNRQAQYAGRASVALHTHLFFRSRVQDEDGYVLYVRKNALQ 158
+L K LC ++N RNR AQ++ + S L ++F+ + + + +
Sbjct: 824 QENLFSNKDLEELCRHINNRNRAAQHSQKQSTELFQCMYFKDKDPETEERCI-------- 875
Query: 159 ILIPKSRVQDEDGYVLYVRKNALQILIPKYGLEGTLFLRCDSPSV---------SWT--- 206
DG + +R N + + IP++G++G +LR V W
Sbjct: 876 ----------SDGVIYSIRTNGVLVFIPRFGIKGAAYLRNKDGLVVSCGPDGHSEWKPGS 925
Query: 207 ---YNEKEQSQSCG--SVVFHSFDPVTVQLSLDRSNVQHEKLVLRLV 248
+ K + G SV FH FD VTV++S+ S + + L ++
Sbjct: 926 LQRFQNKITCTTTGGESVTFHLFDHVTVRISVQTSRCHSDTIRLEII 972
>sp|Q5U2P0|DI3L1_RAT DIS3-like exonuclease 1 OS=Rattus norvegicus GN=Dis3l PE=2 SV=2
Length = 1054
Score = 139 bits (350), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 92/287 (32%), Positives = 135/287 (47%), Gaps = 60/287 (20%)
Query: 4 AMLRRHPVPPPANFEPLLHAARRQGFELSVGTGKELATSLDAA----------------- 46
A+LR+HP P F L A+ +GF + + K LA SLD+A
Sbjct: 704 ALLRQHPPPHQEFFSELRECAKAKGFFIDTRSNKTLADSLDSANDPSDPLVNKLLRSMAT 763
Query: 47 -----AVYFSSGMLQQSDFHHYGLATPIYTHFTSPIRRYADIIVHRLLAACIGADATY-- 99
A+YFS+G + +FHHYGLA YTHFTSPIRRY+DI+VHRLL A I D
Sbjct: 764 QAMSNALYFSTGSCAEEEFHHYGLALDKYTHFTSPIRRYSDIVVHRLLMAAISKDKKVEI 823
Query: 100 -PSLLDKKASTALCYNLNYRNRQAQYAGRASVALHTHLFFRSRVQDEDGYVLYVRKNALQ 158
+L K LC ++N RNR AQ + + S L ++F+ R + + +
Sbjct: 824 KENLFSNKNLEELCRHINNRNRAAQRSQKQSTELFQCMYFKDRDPETEERCVV------- 876
Query: 159 ILIPKSRVQDEDGYVLYVRKNALQILIPKYGLEGTLFLR--------CDSP-SVSWTYNE 209
DG + +R N + + IP++G++G +L+ C S W
Sbjct: 877 -----------DGIIYSIRTNGVLVFIPRFGIKGAAYLKNKDGLVISCGPEGSSEWKPGS 925
Query: 210 KEQSQS--------CGSVVFHSFDPVTVQLSLDRSNVQHEKLVLRLV 248
++SQ+ SV FH FD VTV++S+ S + + L +V
Sbjct: 926 LQRSQNKIISTTAGGQSVTFHLFDHVTVRISVQPSRCHSDMIRLEIV 972
>sp|Q5R5N8|DI3L1_PONAB DIS3-like exonuclease 1 OS=Pongo abelii GN=DIS3L PE=2 SV=1
Length = 1054
Score = 135 bits (340), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 91/287 (31%), Positives = 133/287 (46%), Gaps = 60/287 (20%)
Query: 4 AMLRRHPVPPPANFEPLLHAARRQGFELSVGTGKELATSLDAA----------------- 46
A+LR+HP P F L A+ +GF + + K LA SLD A
Sbjct: 704 ALLRQHPPPHQEFFSELRECAKAKGFFIDTRSNKTLADSLDNANGPHDPIVNRLLRSMAT 763
Query: 47 -----AVYFSSGMLQQSDFHHYGLATPIYTHFTSPIRRYADIIVHRLLAACIGADATYP- 100
A+YFS+G + +FHHYGLA YTHFTSPIRRY+DI+VHRLL A I D
Sbjct: 764 QAMSNALYFSTGSCAEEEFHHYGLALDKYTHFTSPIRRYSDIVVHRLLMAAISKDKKMEI 823
Query: 101 --SLLDKKASTALCYNLNYRNRQAQYAGRASVALHTHLFFRSRVQDEDGYVLYVRKNALQ 158
+L K LC ++N RNR AQ++ + S L ++F+ + + +
Sbjct: 824 KGNLFSNKDLEELCRHINNRNRAAQHSQKQSTELFQCMYFKDKDPATEERCI-------- 875
Query: 159 ILIPKSRVQDEDGYVLYVRKNALQILIPKYGLEGTLFLR--------CDSPSVS-WT--- 206
DG + +R N + + IP++G++G +L+ C S S W
Sbjct: 876 ----------SDGVIYSIRANGVLVFIPRFGIKGAAYLKNKDGLVISCGPDSCSEWKPGS 925
Query: 207 ---YNEKEQSQSCG--SVVFHSFDPVTVQLSLDRSNVQHEKLVLRLV 248
+ K S + SV FH FD VTV++S+ S + L ++
Sbjct: 926 LQRFQNKITSTTTDGESVTFHLFDHVTVRISIQVSRCHSDTTRLEII 972
>sp|Q8TF46|DI3L1_HUMAN DIS3-like exonuclease 1 OS=Homo sapiens GN=DIS3L PE=1 SV=2
Length = 1054
Score = 135 bits (339), Expect = 5e-31, Method: Compositional matrix adjust.
Identities = 90/287 (31%), Positives = 134/287 (46%), Gaps = 60/287 (20%)
Query: 4 AMLRRHPVPPPANFEPLLHAARRQGFELSVGTGKELATSLDAA----------------- 46
A+LR+HP P F L A+ +GF + + K LA SLD A
Sbjct: 704 ALLRQHPPPHQEFFSELRECAKAKGFFIDTRSNKTLADSLDNANDPHDPIVNRLLRSMAT 763
Query: 47 -----AVYFSSGMLQQSDFHHYGLATPIYTHFTSPIRRYADIIVHRLLAACIGADATYP- 100
A+YFS+G + +FHHYGLA YTHFTSPIRRY+DI+VHRLL A I D
Sbjct: 764 QAMSNALYFSTGSCAEEEFHHYGLALDKYTHFTSPIRRYSDIVVHRLLMAAISKDKKMEI 823
Query: 101 --SLLDKKASTALCYNLNYRNRQAQYAGRASVALHTHLFFRSRVQDEDGYVLYVRKNALQ 158
+L K LC ++N RN+ AQ++ + S L ++F+ + + +
Sbjct: 824 KGNLFSNKDLEELCRHINNRNQAAQHSQKQSTELFQCMYFKDKDPATEERCI-------- 875
Query: 159 ILIPKSRVQDEDGYVLYVRKNALQILIPKYGLEGTLFLR--------CDSPSVS-WT--- 206
DG + +R N + + IP++G++G +L+ C S S W
Sbjct: 876 ----------SDGVIYSIRTNGVLLFIPRFGIKGAAYLKNKDGLVISCGPDSCSEWKPGS 925
Query: 207 ---YNEKEQSQSCG--SVVFHSFDPVTVQLSLDRSNVQHEKLVLRLV 248
+ K S + SV FH FD VTV++S+ S + + L ++
Sbjct: 926 LQRFQNKITSTTTDGESVTFHLFDHVTVRISIQASRCHSDTIRLEII 972
>sp|Q08162|RRP44_YEAST Exosome complex exonuclease DIS3 OS=Saccharomyces cerevisiae
(strain ATCC 204508 / S288c) GN=DIS3 PE=1 SV=1
Length = 1001
Score = 134 bits (337), Expect = 8e-31, Method: Compositional matrix adjust.
Identities = 76/187 (40%), Positives = 97/187 (51%), Gaps = 23/187 (12%)
Query: 4 AMLRRHPVPPPANFEPLLHAAR-RQGFELSVGTGKELATSLD------------------ 44
AMLRRH PP NFE L R+ +S+ + K LA SLD
Sbjct: 750 AMLRRHAAPPSTNFEILNEMLNTRKNMSISLESSKALADSLDRCVDPEDPYFNTLVRIMS 809
Query: 45 ----AAAVYFSSGMLQQSDFHHYGLATPIYTHFTSPIRRYADIIVHRLLAACIGADATYP 100
AA YF SG DF HYGLA IYTHFTSPIRRY D++ HR LA IG +
Sbjct: 810 TRCMMAAQYFYSGAYSYPDFRHYGLAVDIYTHFTSPIRRYCDVVAHRQLAGAIGYEPLSL 869
Query: 101 SLLDKKASTALCYNLNYRNRQAQYAGRASVALHTHLFFRSRVQDEDGYVLYVRKNALQIL 160
+ DK +C N+N ++R AQ+AGRAS+ + R+ E GYV+ V N + +L
Sbjct: 870 THRDKNKMDMICRNINRKHRNAQFAGRASIEYYVGQVMRNNESTETGYVIKVFNNGIVVL 929
Query: 161 IPKSRVQ 167
+PK V+
Sbjct: 930 VPKFGVE 936
>sp|Q6GN11|DI3L1_XENLA DIS3-like exonuclease 1 OS=Xenopus laevis GN=dis3l PE=2 SV=2
Length = 1040
Score = 128 bits (322), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 89/289 (30%), Positives = 130/289 (44%), Gaps = 60/289 (20%)
Query: 3 NAMLRRHPVPPPANFEPLLHAARRQGFELSVGTGKELATSLDAA---------------- 46
+A+LR HP P F+ L A+ +GF + + K LA SLD A
Sbjct: 695 HALLRLHPPPRQEFFQELKECAKARGFSIDTRSNKALADSLDQAHDPSDPLVNQLLRMMA 754
Query: 47 ------AVYFSSGMLQQSDFHHYGLATPIYTHFTSPIRRYADIIVHRLLAACIGADATYP 100
A YFS+G + +F+HYGLA YTHFTSPIRRYADI+VHRLL A +
Sbjct: 755 TQAMSNARYFSTGSYTEDEFYHYGLALEKYTHFTSPIRRYADIVVHRLLLAAVNK-GPKD 813
Query: 101 SLLDKKASTALCYNLNYRNRQAQYAGRASVALHTHLFFRSRVQDEDGYVLYVRKNALQIL 160
LL K LC ++N RNR AQ + S L +FF+ + D D +
Sbjct: 814 HLLGNKDLEELCRHINARNRAAQQCQKQSTELFQCMFFKDKDPDSDQRCI---------- 863
Query: 161 IPKSRVQDEDGYVLYVRKNALQILIPKYGLEGTLFLR--------CDSPS-VSWTYNEKE 211
D + +R N + + IP+YG++G +L+ C+ W + +
Sbjct: 864 --------SDAVIYGIRTNGVLLFIPRYGIKGAAYLKNTDGLVLACEEDGQCRWVHGSLQ 915
Query: 212 Q--------SQSCGSVVFHSFDPVTVQLSLDRSNVQHEKLVLRLV--RP 250
+ +Q S F FD VTV++ + S + + L ++ RP
Sbjct: 916 RLPAQIVVTTQEAKSFSFCLFDHVTVRIRIQSSRFHPDSIRLEIISNRP 964
>sp|Q0P4R5|DI3L1_XENTR DIS3-like exonuclease 1 OS=Xenopus tropicalis GN=dis3l PE=2 SV=2
Length = 1039
Score = 125 bits (315), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 86/286 (30%), Positives = 130/286 (45%), Gaps = 58/286 (20%)
Query: 3 NAMLRRHPVPPPANFEPLLHAARRQGFELSVGTGKELATSLDAA---------------- 46
+A+LR HP F+ L A+ +GF + + K LA SLD A
Sbjct: 694 HALLRLHPPARQEFFQELKECAKARGFSIDTRSNKALADSLDQANDPSDPLVNQLLRMMA 753
Query: 47 ------AVYFSSGMLQQSDFHHYGLATPIYTHFTSPIRRYADIIVHRLLAACIGADATYP 100
A YFS+G + +F+HYGLA YTHFTSPIRRYADI+VHRLL A +
Sbjct: 754 TQAMSNARYFSTGSYTEDEFYHYGLALEKYTHFTSPIRRYADIVVHRLLLAAVNK-GPKD 812
Query: 101 SLLDKKASTALCYNLNYRNRQAQYAGRASVALHTHLFFRSRVQDEDGYVLYVRKNALQIL 160
+LL K LC ++N RNR AQ+ + S L +FF+ + D D +
Sbjct: 813 NLLGNKDLEELCRHINVRNRAAQHCQKQSTELFQCMFFKDKDPDSDQRCI---------- 862
Query: 161 IPKSRVQDEDGYVLYVRKNALQILIPKYGLEGTLFLR--------C-DSPSVSWTYNEKE 211
D + +R N + + +P+YG++G +L+ C D+ W +
Sbjct: 863 --------SDAVIYGIRTNGVLLFLPRYGIKGAAYLKNIDGLVLACKDNGRCHWMPGSLQ 914
Query: 212 Q--------SQSCGSVVFHSFDPVTVQLSLDRSNVQHEKLVLRLVR 249
+ +Q S + FD VTV++ + S + + L ++R
Sbjct: 915 RLPDRIVVTTQEAKSFSYCLFDHVTVRIHVQSSRFHPDSIRLEIIR 960
>sp|A2RV18|DI3L1_DANRE DIS3-like exonuclease 1 OS=Danio rerio GN=dis3l PE=2 SV=1
Length = 1057
Score = 124 bits (311), Expect = 8e-28, Method: Compositional matrix adjust.
Identities = 86/287 (29%), Positives = 135/287 (47%), Gaps = 59/287 (20%)
Query: 3 NAMLRRHPVPPPANFEPLLHAARRQGFELSVGTGKELATSLDAA---------------- 46
+A+LR HP P F L+ +A+ GF + + + LA SL+ A
Sbjct: 695 HALLRHHPPPKQEFFNHLIDSAKAHGFSIDTRSNRALADSLERAVDPRDPLVNRLLRMMA 754
Query: 47 ------AVYFSSGMLQQSDFHHYGLATPIYTHFTSPIRRYADIIVHRLLAACI---GADA 97
A+YFS+G + ++HYGLA YTHFTSPIRRYAD+IVHRLL A + ++
Sbjct: 755 TQAMSNALYFSTGSCPEEQYYHYGLALARYTHFTSPIRRYADVIVHRLLMAAVQLEKDES 814
Query: 98 TYPSLLDKKASTALCYNLNYRNRQAQYAGRASVALHTHLFFRSRVQDEDGYVLYVRKNAL 157
+L K L ++N +NR AQ++ + S+ L ++FR + D +
Sbjct: 815 PSKALACNKELEELAQHINNKNRAAQHSQKQSIELFQCMYFRDKDSHTDERCV------- 867
Query: 158 QILIPKSRVQDEDGYVLYVRKNALQILIPKYGLEGTLFL--------------RCD-SPS 202
D + VR N +P+YGL+G ++L +C+ P
Sbjct: 868 -----------ADAVIYAVRANGFLAFVPQYGLKGAVYLKDREGQVISVDGDGKCEWKPG 916
Query: 203 VSWTYNEK-EQSQSCGSVVFHSFDPVTVQLSLDRSNVQHEKLVLRLV 248
Y++K S S G+ F+ F+ VTV++S++ S + L L L+
Sbjct: 917 TLQKYSDKIITSTSTGTHTFYLFNHVTVRISVEPSRCHADSLNLELI 963
>sp|Q8CI75|DI3L2_MOUSE DIS3-like exonuclease 2 OS=Mus musculus GN=Dis3l2 PE=1 SV=1
Length = 870
Score = 88.2 bits (217), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 65/222 (29%), Positives = 95/222 (42%), Gaps = 56/222 (25%)
Query: 2 DNAMLRRHPVPPPANFEPLLHAARRQGFELSVGTGKELATSLDAA--------------- 46
+ A+LRRHP P L+ + G + V + L SL
Sbjct: 601 EQALLRRHPPPQTKMLSDLVEFCDQMGLPMDVSSAGALNKSLTKTFGDDKYSLARKEVLT 660
Query: 47 ---------AVYFSSGMLQ-QSDFHHYGLATPIYTHFTSPIRRYADIIVHRLLAACIGAD 96
A+YF SGMLQ Q F HY L P+YTHFTSPIRR+AD+IVHRLLAA +G
Sbjct: 661 NMYSRPMQMALYFCSGMLQDQEQFRHYALNVPLYTHFTSPIRRFADVIVHRLLAAALGYS 720
Query: 97 A---TYPSLLDKKASTALCYNLNYRNRQAQYAGRASVALHTHLFFRSRVQDEDGYVLYVR 153
P L K+A C + +++ Q L LFF
Sbjct: 721 EQPDVEPDTLQKQADH--CNDRRMASKRVQ-------ELSIGLFF--------------- 756
Query: 154 KNALQILIPKSRVQDEDGYVLYVRKNALQILIPKYGLEGTLF 195
+L+ +S + + V+ V A +L+ ++G++ ++
Sbjct: 757 ----AVLVKESGPLESEAMVMGVLNQAFDVLVLRFGVQKRIY 794
>sp|Q8IYB7|DI3L2_HUMAN DIS3-like exonuclease 2 OS=Homo sapiens GN=DIS3L2 PE=1 SV=4
Length = 885
Score = 87.4 bits (215), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 75/290 (25%), Positives = 119/290 (41%), Gaps = 65/290 (22%)
Query: 2 DNAMLRRHPVPPPANFEPLLHAARRQGFELSVGTGKELATSLDAA--------------- 46
+ A+LRRHP P L+ + G + + L SL
Sbjct: 603 EQALLRRHPPPQTRMLSDLVEFCDQMGLPVDFSSAGALNKSLTQTFGDDKYSLARKEVLT 662
Query: 47 ---------AVYFSSGMLQQ-SDFHHYGLATPIYTHFTSPIRRYADIIVHRLLAACIGAD 96
A+YF SG+LQ + F HY L P+YTHFTSPIRR+AD++VHRLLAA +G
Sbjct: 663 NMCSRPMQMALYFCSGLLQDPAQFRHYALNVPLYTHFTSPIRRFADVLVHRLLAAALG-- 720
Query: 97 ATYPSLLDKKASTALCYNLNYRNRQAQYAGRASVALHTHLFFRSRVQDEDGYVLYVRKNA 156
Y LD T L ++ N + + R L T LFF
Sbjct: 721 --YRERLDMAPDT-LQKQADHCNDRRMASKRVQ-ELSTSLFF------------------ 758
Query: 157 LQILIPKSRVQDEDGYVLYVRKNALQILIPKYGLEGTLFLRC------------DSPSVS 204
+L+ +S + + V+ + K A +L+ +YG++ ++ P ++
Sbjct: 759 -AVLVKESGPLESEAMVMGILKQAFDVLVLRYGVQKRIYCNALALRSHHFQKVGKKPELT 817
Query: 205 WTYNEKEQSQSCGSVVFHSFDPVTVQLSLDRSNVQHEKLVLRLVRPVIEG 254
+ ++ Q V F V V L + + +++ + L RP +G
Sbjct: 818 LVWEPEDMEQEPAQQVITIFSLVEVVLQAESTALKYSAI---LKRPGTQG 864
>sp|Q0V9R3|DI3L2_XENTR DIS3-like exonuclease 2 OS=Xenopus tropicalis GN=dis3l2 PE=2 SV=1
Length = 834
Score = 84.0 bits (206), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 61/196 (31%), Positives = 89/196 (45%), Gaps = 36/196 (18%)
Query: 2 DNAMLRRHPVPPPANFEPLLHAARRQGFELSVGTGKELATSLD----------------- 44
+ A+LRRHP P L+ + G +L + L SL+
Sbjct: 574 EEALLRRHPPPQTKMLNDLIEFCDQMGLQLDFTSSGTLHKSLNDQFETDEYSAARKEVLT 633
Query: 45 -------AAAVYFSSGMLQ-QSDFHHYGLATPIYTHFTSPIRRYADIIVHRLLAACIGAD 96
AVYF +G L+ ++ FHHY L P+YTHFTSPIRR+AD+IVHRLLAA +G
Sbjct: 634 NMCSRPMQMAVYFCTGALKDETLFHHYALNVPLYTHFTSPIRRFADVIVHRLLAASLGCG 693
Query: 97 ATYPSLLDKKASTALCYNLNYRNRQAQYAGRASVALHTHLFFRSRVQ-----DEDGYVLY 151
P + K+ + N R + A + L LFF V+ + + V+
Sbjct: 694 P--PLKMPKEVIQKQADHCNDR----KTASKRVQELSAELFFSVFVKECGPLESEAMVMG 747
Query: 152 VRKNALQILIPKSRVQ 167
V A +++ + VQ
Sbjct: 748 VLNEAFDVIVLRFGVQ 763
>sp|O14040|DIS3L_SCHPO Dis3-like exonuclease C2C4.07c OS=Schizosaccharomyces pombe (strain
972 / ATCC 24843) GN=SPAC2C4.07c PE=3 SV=1
Length = 927
Score = 71.2 bits (173), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 55/221 (24%), Positives = 90/221 (40%), Gaps = 43/221 (19%)
Query: 2 DNAMLRRHPVPPPANFEPLLHAARRQGFELSVGT---------------GKELATSLDAA 46
+N++LRRH P H + F+ + +EL +
Sbjct: 671 NNSLLRRHASPKEKQINEFCHFLKSMNFDFDASSSAAFNASMVRLRSTFNEELVELFENM 730
Query: 47 AV-------YFSSGML-QQSDFHHYGLATPIYTHFTSPIRRYADIIVHRLLAACIGADAT 98
AV YF +G +++D+HHY L+ YTHFTSPIRRY DIIVHRLL + T
Sbjct: 731 AVRSLNRAEYFCTGDFGEKTDWHHYALSFNHYTHFTSPIRRYPDIIVHRLLERSLK--NT 788
Query: 99 YPSLLDKKASTALCYNLNYRNRQAQYAGRASVALHTHLFFRSRVQDEDGYVLYVRKNALQ 158
P +DKK + + + N + ++ S L ++ + D + V+
Sbjct: 789 SPG-IDKKNCSLVAAHCNEKKEKSTTVQEDSQQLFLSVYIAEYCKKHDKKSMPVQ----- 842
Query: 159 ILIPKSRVQDEDGYVLYVRKNALQILIPKYGLEGTLFLRCD 199
+ + N++ + I +YG+ + L D
Sbjct: 843 ------------AFATRISGNSIDVYISEYGISNRVDLSSD 871
>sp|Q09568|YR86_CAEEL Uncharacterized ribonuclease F48E8.6 OS=Caenorhabditis elegans
GN=F48E8.6 PE=3 SV=2
Length = 848
Score = 67.4 bits (163), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 42/117 (35%), Positives = 54/117 (46%), Gaps = 24/117 (20%)
Query: 2 DNAMLRRHPVPPPANFEPLLHAARRQGFELSVGTGKELATSLDA---------------- 45
++A+LR HP P + + R GF L T L+TSL
Sbjct: 570 EHALLRNHPPPKEKMIKDVAEQCARIGFPLDGRTSGLLSTSLRKYQGKSRLDMCIRQVIS 629
Query: 46 --------AAVYFSSGMLQQSDFHHYGLATPIYTHFTSPIRRYADIIVHRLLAACIG 94
A YF + + S +HH+ L YTHFTSPIRRY D+IVHR LAA +G
Sbjct: 630 SLTIKPMQQAKYFCTFEMPLSFYHHFALNVDHYTHFTSPIRRYPDVIVHRQLAAALG 686
>sp|Q02146|RNR2_LACLA Ribonuclease R 2 OS=Lactococcus lactis subsp. lactis (strain
IL1403) GN=rnr2 PE=3 SV=3
Length = 665
Score = 65.5 bits (158), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 36/99 (36%), Positives = 52/99 (52%), Gaps = 13/99 (13%)
Query: 4 AMLRRHPVPPPANFEPLLHAARRQGFELSVGTGKEL--------ATSLDAAAVY-----F 50
++ R H P +F L+ AA GF L+ + + + TS + A Y
Sbjct: 427 SLYRVHDNPKEKSFAKLMEAAANAGFSLNSDSHQAINFFADEIKGTSSEKALTYQLRHTM 486
Query: 51 SSGMLQQSDFHHYGLATPIYTHFTSPIRRYADIIVHRLL 89
S+ + + + H+GLA YTHFTSPIRRY D+I+HRLL
Sbjct: 487 STAVYSEKNTKHFGLAATNYTHFTSPIRRYPDLIIHRLL 525
>sp|P24276|SSD1_YEAST Protein SSD1 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c)
GN=SSD1 PE=1 SV=1
Length = 1250
Score = 62.4 bits (150), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 45/146 (30%), Positives = 70/146 (47%), Gaps = 24/146 (16%)
Query: 47 AVYFSSGMLQQSDFHHYGLATPIYTHFTSPIRRYADIIVHRLLAACIGADATYPSLLDK- 105
A YF +G + + HY L PIYTHFT+P+RRYAD +VHR L A I D Y ++
Sbjct: 968 ARYFIAGKVDPDQYGHYALNLPIYTHFTAPMRRYADHVVHRQLKAVI-HDTPYTEDMEAL 1026
Query: 106 KASTALCYNLNYRNRQAQYAGRASVALHTHLFFRSRVQDEDGYVLYVRKNALQILIPKSR 165
K ++ C N++ A A ++ HL + D + Q+L +
Sbjct: 1027 KITSEYC---NFKKDCAYQAQEQAI----HLLLCKTIND-------MGNTTGQLLTMAT- 1071
Query: 166 VQDEDGYVLYVRKNALQILIPKYGLE 191
VL V +++ + IP++G+E
Sbjct: 1072 -------VLQVYESSFDVFIPEFGIE 1090
>sp|Q9Z848|RNR_CHLPN Ribonuclease R OS=Chlamydia pneumoniae GN=rnr PE=3 SV=1
Length = 676
Score = 55.8 bits (133), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 26/48 (54%), Positives = 32/48 (66%)
Query: 62 HYGLATPIYTHFTSPIRRYADIIVHRLLAACIGADATYPSLLDKKAST 109
HYGL YTHFTSPIRRY D+IVHRLL + D T+ ++ + ST
Sbjct: 497 HYGLKLDYYTHFTSPIRRYIDLIVHRLLFNPLSIDQTHLEIIVRACST 544
>sp|Q9CH00|RNR1_LACLA Ribonuclease R 1 OS=Lactococcus lactis subsp. lactis (strain
IL1403) GN=rnr1 PE=3 SV=1
Length = 817
Score = 55.5 bits (132), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 33/86 (38%), Positives = 46/86 (53%), Gaps = 3/86 (3%)
Query: 62 HYGLATPIYTHFTSPIRRYADIIVHRLLAACIGADATYPSLLDKKAST--ALCYNLNYRN 119
H+GLA YTHFTSPIRRY D++VHRL+ IG T ++L K + + ++R
Sbjct: 555 HFGLAAENYTHFTSPIRRYPDLLVHRLIRE-IGEGKTPANILQKWEDKIPEIAEHSSHRE 613
Query: 120 RQAQYAGRASVALHTHLFFRSRVQDE 145
R+A A R + F V +E
Sbjct: 614 RRAVDAEREVEKMKKAEFMEEHVGEE 639
>sp|Q9PR88|RNR_UREPA Ribonuclease R OS=Ureaplasma parvum serovar 3 (strain ATCC 700970)
GN=rnr PE=3 SV=1
Length = 721
Score = 54.3 bits (129), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 24/38 (63%), Positives = 28/38 (73%)
Query: 62 HYGLATPIYTHFTSPIRRYADIIVHRLLAACIGADATY 99
H+GLA+ YTHFTSPIRRY D+IVHRLL I +Y
Sbjct: 555 HFGLASDNYTHFTSPIRRYPDLIVHRLLWMFIFDSQSY 592
>sp|O32231|RNR_BACSU Ribonuclease R OS=Bacillus subtilis (strain 168) GN=rnr PE=3 SV=1
Length = 779
Score = 53.9 bits (128), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 33/106 (31%), Positives = 54/106 (50%), Gaps = 3/106 (2%)
Query: 62 HYGLATPIYTHFTSPIRRYADIIVHRLLAACIGADATYPSLLDKKAS--TALCYNLNYRN 119
H+GL+T YTHFTSPIRRY D+IVHRL+ + + +K A + + +
Sbjct: 545 HFGLSTEFYTHFTSPIRRYPDLIVHRLIRTYLINGKVDEATQEKWAERLPDIAEHTSSME 604
Query: 120 RQAQYAGRASVALHTHLFFRSRVQDE-DGYVLYVRKNALQILIPKS 164
R+A A R + L + ++ +E DG + V + + +P +
Sbjct: 605 RRAVDAERETDDLKKAEYMLDKIGEEFDGMISSVTNFGMFVELPNT 650
>sp|Q9WZI1|RNR_THEMA Ribonuclease R OS=Thermotoga maritima (strain ATCC 43589 / MSB8 /
DSM 3109 / JCM 10099) GN=rnr PE=3 SV=1
Length = 710
Score = 53.5 bits (127), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 31/83 (37%), Positives = 45/83 (54%), Gaps = 3/83 (3%)
Query: 53 GMLQQSDFHHYGLATPIYTHFTSPIRRYADIIVHRLLAACIGADATY-PSLLDK--KAST 109
M + H+GLA+ YTHFTSPIRRY D++VHRLL + + + P ++K K
Sbjct: 532 AMYSAVNIGHFGLASYAYTHFTSPIRRYPDLVVHRLLKLYLEQNGYFTPEQIEKFSKVLP 591
Query: 110 ALCYNLNYRNRQAQYAGRASVAL 132
+ + + R R A A VA+
Sbjct: 592 KIAKHCSRRERVADEAEWDLVAM 614
>sp|O67834|RNR_AQUAE Ribonuclease R OS=Aquifex aeolicus (strain VF5) GN=rnr PE=3 SV=1
Length = 705
Score = 52.4 bits (124), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 40/127 (31%), Positives = 63/127 (49%), Gaps = 20/127 (15%)
Query: 62 HYGLATPIYTHFTSPIRRYADIIVHRLLAACI-GADATYPSLLDKKASTALCYNLNYRNR 120
H+GLA Y HFTSPIRRY DIIVHRLL + G + Y +K L N+ ++
Sbjct: 535 HFGLALEHYAHFTSPIRRYPDIIVHRLLKKALRGEEIDY-----EKTLAYLEEAGNHLSK 589
Query: 121 QAQYAGRASVALHTHL---FFRSRVQDE----------DGYVLYVRKNALQILIPKSRVQ 167
Q + A A + +L + + R+ +E G+ + + +N ++ L+ + +
Sbjct: 590 QERIADEAEMEAIDYLKARYMKGRIGEEFIGIITGVVAFGFFVELEENLVEGLVKINTLT 649
Query: 168 DEDGYVL 174
D D YV
Sbjct: 650 D-DEYVF 655
>sp|P56123|RNR_HELPY Ribonuclease R OS=Helicobacter pylori (strain ATCC 700392 / 26695)
GN=rnr PE=3 SV=1
Length = 644
Score = 52.0 bits (123), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 31/73 (42%), Positives = 42/73 (57%), Gaps = 4/73 (5%)
Query: 55 LQQSDFHHYGLATPIYTHFTSPIRRYADIIVHRLLAACIGADATYPSLLDKKASTALCYN 114
LQ+S H+GL YTHFTSPIRRY+D+ +HRLL + A S L ++ + LC
Sbjct: 493 LQES---HFGLGFASYTHFTSPIRRYSDLALHRLLKELLFYQAKGCSYLLEE-TPELCAE 548
Query: 115 LNYRNRQAQYAGR 127
LN ++A R
Sbjct: 549 LNALQKKAALIER 561
>sp|Q1LTG8|RNB_BAUCH Exoribonuclease 2 OS=Baumannia cicadellinicola subsp. Homalodisca
coagulata GN=rnb PE=3 SV=1
Length = 645
Score = 52.0 bits (123), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 25/66 (37%), Positives = 39/66 (59%), Gaps = 6/66 (9%)
Query: 62 HYGLATPIYTHFTSPIRRYADIIVHRLLAACIGADATYPSLLDKKASTALCYNLNYRNRQ 121
H+GL +Y +TSPIR+Y+D++ HRLL A IGA ++ T + + ++ R RQ
Sbjct: 486 HFGLGLEVYATWTSPIRKYSDMMNHRLLKALIGAGKA------ERPKTDITFRMSERRRQ 539
Query: 122 AQYAGR 127
+ A R
Sbjct: 540 NRIAER 545
>sp|Q9ZJX9|RNR_HELPJ Ribonuclease R OS=Helicobacter pylori (strain J99) GN=rnr PE=3 SV=1
Length = 644
Score = 51.6 bits (122), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 28/66 (42%), Positives = 38/66 (57%), Gaps = 1/66 (1%)
Query: 62 HYGLATPIYTHFTSPIRRYADIIVHRLLAACIGADATYPSLLDKKASTALCYNLNYRNRQ 121
H+GL YTHFTSPIRRY+D+ +HRLL + A S L ++ + LC LN ++
Sbjct: 497 HFGLGFASYTHFTSPIRRYSDLALHRLLKELLFHQAKGCSYLLEE-TPELCAELNALQKK 555
Query: 122 AQYAGR 127
A R
Sbjct: 556 AALIER 561
>sp|O84402|RNR_CHLTR Ribonuclease R OS=Chlamydia trachomatis (strain D/UW-3/Cx) GN=rnr
PE=3 SV=1
Length = 694
Score = 51.6 bits (122), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 22/28 (78%), Positives = 23/28 (82%)
Query: 62 HYGLATPIYTHFTSPIRRYADIIVHRLL 89
HYGL YTHFTSPIRRY D+IVHRLL
Sbjct: 494 HYGLCLDYYTHFTSPIRRYVDLIVHRLL 521
>sp|Q9PK00|RNR_CHLMU Ribonuclease R OS=Chlamydia muridarum (strain MoPn / Nigg) GN=rnr
PE=3 SV=1
Length = 692
Score = 51.6 bits (122), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 22/28 (78%), Positives = 23/28 (82%)
Query: 62 HYGLATPIYTHFTSPIRRYADIIVHRLL 89
HYGL YTHFTSPIRRY D+IVHRLL
Sbjct: 494 HYGLCLDYYTHFTSPIRRYVDLIVHRLL 521
>sp|D0Z8E6|RNB_EDWTE Exoribonuclease 2 OS=Edwardsiella tarda (strain EIB202) GN=rnb PE=3
SV=2
Length = 647
Score = 50.1 bits (118), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 29/67 (43%), Positives = 36/67 (53%), Gaps = 8/67 (11%)
Query: 62 HYGLATPIYTHFTSPIRRYADIIVHRLLAACI-GADATYPSLLDKKASTALCYNLNYRNR 120
H+GL Y +TSPIR+Y D++ HRLL A I GA AT P A+ L R R
Sbjct: 486 HFGLGLEAYATWTSPIRKYGDMVNHRLLKALIAGAPATRP-------DPAMTLQLAERRR 538
Query: 121 QAQYAGR 127
Q + A R
Sbjct: 539 QNRMAER 545
>sp|D3V184|RNB_XENBS Exoribonuclease 2 OS=Xenorhabdus bovienii (strain SS-2004) GN=rnb
PE=3 SV=1
Length = 646
Score = 49.7 bits (117), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 27/66 (40%), Positives = 35/66 (53%), Gaps = 6/66 (9%)
Query: 62 HYGLATPIYTHFTSPIRRYADIIVHRLLAACIGADATYPSLLDKKASTALCYNLNYRNRQ 121
H+GL Y +TSPIR+Y+DII HRLL A I ++K S +C L R R
Sbjct: 486 HFGLGFDAYATWTSPIRKYSDIINHRLLKAIIQQTE------EEKPSEEVCLQLTERRRA 539
Query: 122 AQYAGR 127
+ A R
Sbjct: 540 NRMAER 545
>sp|Q9BYK8|HELZ2_HUMAN Helicase with zinc finger domain 2 OS=Homo sapiens GN=HELZ2 PE=1 SV=6
Length = 2649
Score = 49.3 bits (116), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 36/132 (27%), Positives = 64/132 (48%), Gaps = 6/132 (4%)
Query: 36 GKELATSLDAAAVYFSSGMLQQSDFHHYGLATPIYTHFTSPIRRYADIIVHRLLAACIGA 95
G++L +L+ +A + Q HY L YT TSPIRRY D+++ R + +G
Sbjct: 1635 GRDLRKALERSA-FGRCARGHQQQGGHYSLQVDWYTWATSPIRRYLDVVLQRQILLALGH 1693
Query: 96 DATYPSLLDKKASTALCYNLNYRNRQAQYAGRASVALHTHLFFRSRVQDEDGYVLYVRKN 155
+ S D LC + ++ AQ R + +LH + +++ D+ G+V+ V
Sbjct: 1694 GGSAYSARDID---GLCQAFSLQHALAQSYQRRARSLHLAVQLKAQPLDKLGFVVDVEAG 1750
Query: 156 A--LQILIPKSR 165
+ ++L P +R
Sbjct: 1751 SRCFRLLFPSNR 1762
>sp|Q98QL0|RNR_MYCPU Ribonuclease R OS=Mycoplasma pulmonis (strain UAB CTIP) GN=rnr PE=3
SV=1
Length = 725
Score = 48.9 bits (115), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 18/32 (56%), Positives = 25/32 (78%)
Query: 62 HYGLATPIYTHFTSPIRRYADIIVHRLLAACI 93
H+GLA+ Y+HFTSPIRRY D+ +HRL+ +
Sbjct: 528 HFGLASSYYSHFTSPIRRYPDLQLHRLIKQMV 559
>sp|Q8K917|RNR_BUCAP Ribonuclease R OS=Buchnera aphidicola subsp. Schizaphis graminum
(strain Sg) GN=rnr PE=3 SV=1
Length = 726
Score = 47.8 bits (112), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 24/55 (43%), Positives = 32/55 (58%), Gaps = 8/55 (14%)
Query: 62 HYGLATPIYTHFTSPIRRYADIIVHRLLAACIGADATYPSLLDKKASTALCYNLN 116
H+GL+ Y HFTSPIRRY D++VHR++ + L +K S YNLN
Sbjct: 559 HFGLSLSSYVHFTSPIRRYPDLLVHRVIKNLL--------LKEKNLSKYHLYNLN 605
>sp|Q2NST6|RNB_SODGM Exoribonuclease 2 OS=Sodalis glossinidius (strain morsitans) GN=rnb
PE=3 SV=1
Length = 644
Score = 47.8 bits (112), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 28/67 (41%), Positives = 35/67 (52%), Gaps = 8/67 (11%)
Query: 62 HYGLATPIYTHFTSPIRRYADIIVHRLLAACIG-ADATYPSLLDKKASTALCYNLNYRNR 120
H+GL Y +TSPIR+Y D+I HRLL A IG DA P + + L R R
Sbjct: 485 HFGLGLDAYATWTSPIRKYGDMINHRLLKALIGVGDAERP-------NEEVTLRLAERRR 537
Query: 121 QAQYAGR 127
Q + A R
Sbjct: 538 QNRMAER 544
>sp|O94525|YBU1_SCHPO Uncharacterized ribonuclease C609.01 OS=Schizosaccharomyces pombe
(strain 972 / ATCC 24843) GN=SPBC609.01 PE=3 SV=1
Length = 1157
Score = 47.4 bits (111), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 45/171 (26%), Positives = 63/171 (36%), Gaps = 24/171 (14%)
Query: 14 PANFEPLLHAARRQGFELSVGTG-----KELATSLDAAAVY--------------FSSGM 54
P++F L+ + G LS + E+AT+ D ++ G
Sbjct: 824 PSDFASLVAVSELTGVNLSASSTPSEIMTEIATTKDKRTKMLLQLTLRRMCNESEYTIGT 883
Query: 55 LQQSDFHHYGLATPIYTHFTSPIRRYADIIVHRLLAACIGA----DATYPSLLDKKASTA 110
D H+ + P YTHF P RRY DI V R L Y SLL S
Sbjct: 884 SNAKDVSHFVFSCPYYTHFCHPTRRYIDICVQRQLREAFDGRPDFSKDYRSLLSITQSCN 943
Query: 111 LCYNLNYRNRQAQYAGRASVALHTHLFFRSRVQDEDGYVLYVRKNALQILI 161
N YRN Q + L + RS + +VL V + + I+I
Sbjct: 944 TLSNF-YRNAQEKSLHAYLCQLLHSINLRSGLVKHKAFVLAVDQEYIDIVI 993
>sp|P75529|RNR_MYCPN Ribonuclease R OS=Mycoplasma pneumoniae (strain ATCC 29342 / M129)
GN=rnr PE=3 SV=1
Length = 726
Score = 47.0 bits (110), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 19/28 (67%), Positives = 23/28 (82%)
Query: 62 HYGLATPIYTHFTSPIRRYADIIVHRLL 89
H+ + + YTHFTSPIRRYAD+ VHRLL
Sbjct: 561 HFSIGSHHYTHFTSPIRRYADLTVHRLL 588
>sp|B4EW02|RNB_PROMH Exoribonuclease 2 OS=Proteus mirabilis (strain HI4320) GN=rnb PE=3
SV=1
Length = 647
Score = 46.6 bits (109), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 25/66 (37%), Positives = 33/66 (50%), Gaps = 6/66 (9%)
Query: 62 HYGLATPIYTHFTSPIRRYADIIVHRLLAACIGADATYPSLLDKKASTALCYNLNYRNRQ 121
H+GL Y +TSPIR+Y+DI+ HRLL A I A +K C + R R
Sbjct: 488 HFGLGLEAYATWTSPIRKYSDILNHRLLKAIISKSAA------EKPQDEDCVRIAERRRA 541
Query: 122 AQYAGR 127
+ A R
Sbjct: 542 NRMAER 547
>sp|A6VN85|RNB_ACTSZ Exoribonuclease 2 OS=Actinobacillus succinogenes (strain ATCC 55618
/ 130Z) GN=rnb PE=3 SV=1
Length = 659
Score = 46.6 bits (109), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 18/36 (50%), Positives = 25/36 (69%)
Query: 62 HYGLATPIYTHFTSPIRRYADIIVHRLLAACIGADA 97
H+GL Y +TSPIR+Y+D++ HRL+ ACI A
Sbjct: 499 HFGLGLTGYATWTSPIRKYSDMVNHRLIKACIAEQA 534
>sp|Q6D5S7|RNB_ERWCT Exoribonuclease 2 OS=Erwinia carotovora subsp. atroseptica (strain
SCRI 1043 / ATCC BAA-672) GN=rnb PE=3 SV=1
Length = 644
Score = 46.6 bits (109), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 46/154 (29%), Positives = 63/154 (40%), Gaps = 27/154 (17%)
Query: 62 HYGLATPIYTHFTSPIRRYADIIVHRLLAACIGADATYPSLLDKKASTALCYNLNYRNRQ 121
H+GL Y +TSPIR+Y D++ HRLL A I A D A L NR
Sbjct: 484 HFGLGLEAYATWTSPIRKYGDMVNHRLLKAVITGQAAEKPQDDVTVQLAERRRL---NRM 540
Query: 122 AQ-------YAGRASVALHTHLFFRSRVQDEDGYVLYVR--KNALQILIPKS---RVQDE 169
A+ YA T + F + + D L VR N + IP S V+DE
Sbjct: 541 AERDVGDWLYARYLKDKAGTDIRFNAEIIDVTRGGLRVRLLDNGAVVFIPSSFIHAVRDE 600
Query: 170 ------------DGYVLYVRKNALQILIPKYGLE 191
G V+Y + + L ++I + LE
Sbjct: 601 LVCSQEMGTLSVKGEVVYRQGDTLDVIIAEVRLE 634
>sp|P57628|RNR_BUCAI Ribonuclease R OS=Buchnera aphidicola subsp. Acyrthosiphon pisum
(strain APS) GN=rnr PE=3 SV=2
Length = 731
Score = 46.2 bits (108), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 18/37 (48%), Positives = 25/37 (67%)
Query: 62 HYGLATPIYTHFTSPIRRYADIIVHRLLAACIGADAT 98
H+GL+ Y HFTSPIRRY D+I+HR++ + D
Sbjct: 557 HFGLSLSSYVHFTSPIRRYPDLILHRVIKYLLFKDKN 593
>sp|Q65SI5|RNB_MANSM Exoribonuclease 2 OS=Mannheimia succiniciproducens (strain MBEL55E)
GN=rnb PE=3 SV=1
Length = 659
Score = 46.2 bits (108), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 31/115 (26%), Positives = 54/115 (46%), Gaps = 14/115 (12%)
Query: 62 HYGLATPIYTHFTSPIRRYADIIVHRLLAACIGA-DATYPSLLDKKASTALCYNLNYRNR 120
H+GL Y +TSPIR+Y+D++ HRL+ AC+ + PS + A +NR
Sbjct: 500 HFGLGLTGYATWTSPIRKYSDMVNHRLIKACLANRECVKPS----DETLARLQEARKQNR 555
Query: 121 QAQ-------YAGRASVALHTHLFFRSRVQD--EDGYVLYVRKNALQILIPKSRV 166
+ Y + + ++ FR+ VQD G + + +N + +P S +
Sbjct: 556 MVERDIADWLYCRYLADKVESNPEFRAEVQDCMRGGLRVQLLENGASVFVPASSI 610
>sp|P59107|RNB_SHIFL Exoribonuclease 2 OS=Shigella flexneri GN=rnb PE=3 SV=1
Length = 644
Score = 45.8 bits (107), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 22/40 (55%), Positives = 26/40 (65%), Gaps = 1/40 (2%)
Query: 62 HYGLATPIYTHFTSPIRRYADIIVHRLLAACI-GADATYP 100
H+GL Y +TSPIR+Y D+I HRLL A I G AT P
Sbjct: 484 HFGLGLEAYATWTSPIRKYGDMINHRLLKAVIKGETATRP 523
>sp|Q0T5B1|RNB_SHIF8 Exoribonuclease 2 OS=Shigella flexneri serotype 5b (strain 8401)
GN=rnb PE=3 SV=1
Length = 644
Score = 45.8 bits (107), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 22/40 (55%), Positives = 26/40 (65%), Gaps = 1/40 (2%)
Query: 62 HYGLATPIYTHFTSPIRRYADIIVHRLLAACI-GADATYP 100
H+GL Y +TSPIR+Y D+I HRLL A I G AT P
Sbjct: 484 HFGLGLEAYATWTSPIRKYGDMINHRLLKAVIKGETATRP 523
>sp|B6IA03|RNB_ECOSE Exoribonuclease 2 OS=Escherichia coli (strain SE11) GN=rnb PE=3
SV=1
Length = 644
Score = 45.8 bits (107), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 22/40 (55%), Positives = 26/40 (65%), Gaps = 1/40 (2%)
Query: 62 HYGLATPIYTHFTSPIRRYADIIVHRLLAACI-GADATYP 100
H+GL Y +TSPIR+Y D+I HRLL A I G AT P
Sbjct: 484 HFGLGLEAYATWTSPIRKYGDMINHRLLKAVIKGETATRP 523
>sp|P30850|RNB_ECOLI Exoribonuclease 2 OS=Escherichia coli (strain K12) GN=rnb PE=1 SV=3
Length = 644
Score = 45.8 bits (107), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 22/40 (55%), Positives = 26/40 (65%), Gaps = 1/40 (2%)
Query: 62 HYGLATPIYTHFTSPIRRYADIIVHRLLAACI-GADATYP 100
H+GL Y +TSPIR+Y D+I HRLL A I G AT P
Sbjct: 484 HFGLGLEAYATWTSPIRKYGDMINHRLLKAVIKGETATRP 523
>sp|B1XBN7|RNB_ECODH Exoribonuclease 2 OS=Escherichia coli (strain K12 / DH10B) GN=rnb
PE=3 SV=1
Length = 644
Score = 45.8 bits (107), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 22/40 (55%), Positives = 26/40 (65%), Gaps = 1/40 (2%)
Query: 62 HYGLATPIYTHFTSPIRRYADIIVHRLLAACI-GADATYP 100
H+GL Y +TSPIR+Y D+I HRLL A I G AT P
Sbjct: 484 HFGLGLEAYATWTSPIRKYGDMINHRLLKAVIKGETATRP 523
>sp|C4ZTY2|RNB_ECOBW Exoribonuclease 2 OS=Escherichia coli (strain K12 / MC4100 /
BW2952) GN=rnb PE=3 SV=1
Length = 644
Score = 45.8 bits (107), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 22/40 (55%), Positives = 26/40 (65%), Gaps = 1/40 (2%)
Query: 62 HYGLATPIYTHFTSPIRRYADIIVHRLLAACI-GADATYP 100
H+GL Y +TSPIR+Y D+I HRLL A I G AT P
Sbjct: 484 HFGLGLEAYATWTSPIRKYGDMINHRLLKAVIKGETATRP 523
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.320 0.135 0.398
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 102,304,556
Number of Sequences: 539616
Number of extensions: 4064290
Number of successful extensions: 8735
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 139
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 8539
Number of HSP's gapped (non-prelim): 151
length of query: 279
length of database: 191,569,459
effective HSP length: 116
effective length of query: 163
effective length of database: 128,974,003
effective search space: 21022762489
effective search space used: 21022762489
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 60 (27.7 bits)