Query psy4846
Match_columns 279
No_of_seqs 223 out of 1608
Neff 7.2
Searched_HMMs 29240
Date Fri Aug 16 19:12:59 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy4846.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/4846hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2vnu_D Exosome complex exonucl 100.0 1.2E-48 4.2E-53 396.3 23.4 220 2-248 507-760 (760)
2 2wp8_J Exosome complex exonucl 100.0 6.9E-48 2.3E-52 397.9 24.7 220 2-248 724-977 (977)
3 2id0_A Exoribonuclease 2; RNAs 100.0 3.8E-45 1.3E-49 365.1 23.4 214 3-249 410-644 (644)
4 2r7d_A Ribonuclease II family 100.0 3.5E-35 1.2E-39 283.3 20.2 174 3-251 287-464 (469)
5 1luz_A Protein K3, protein K2; 98.9 2.4E-10 8.1E-15 85.7 2.7 69 167-249 13-83 (88)
6 4ayb_E DNA-directed RNA polyme 98.9 3E-09 1E-13 89.7 8.5 80 167-251 83-168 (180)
7 2k52_A Uncharacterized protein 98.8 7.1E-09 2.4E-13 76.0 7.5 66 168-250 8-73 (80)
8 2ckz_B C25, DNA-directed RNA p 98.8 3E-09 1E-13 92.5 6.4 70 168-241 84-158 (218)
9 1go3_E DNA-directed RNA polyme 98.8 1.9E-08 6.5E-13 85.2 9.3 80 166-250 82-168 (187)
10 2khi_A 30S ribosomal protein S 98.8 9.8E-09 3.4E-13 80.5 6.2 70 169-250 34-103 (115)
11 2eqs_A ATP-dependent RNA helic 98.8 7.3E-09 2.5E-13 79.7 5.1 70 168-250 15-86 (103)
12 2c35_B Human RPB7, DNA-directe 98.7 6.9E-08 2.4E-12 80.8 9.4 70 166-241 82-155 (172)
13 1kl9_A Eukaryotic translation 98.7 9.8E-09 3.4E-13 86.9 4.1 70 169-250 19-89 (182)
14 2k4k_A GSP13, general stress p 98.7 2.2E-08 7.6E-13 80.2 5.7 69 168-249 10-78 (130)
15 2cqo_A Nucleolar protein of 40 98.7 1.2E-08 4.2E-13 80.5 4.1 72 167-250 24-97 (119)
16 2a19_A EIF-2- alpha, eukaryoti 98.7 1E-08 3.5E-13 86.3 3.4 70 169-250 19-89 (175)
17 2b8k_G B16, DNA-directed RNA p 98.6 7.2E-08 2.4E-12 83.7 8.3 68 168-241 86-155 (215)
18 1y14_B B16, RPB7, DNA-directed 98.6 1.1E-07 3.8E-12 79.5 8.4 71 167-243 85-157 (171)
19 3ayh_B DNA-directed RNA polyme 98.6 8.4E-08 2.9E-12 82.5 6.8 68 167-239 83-160 (203)
20 2khj_A 30S ribosomal protein S 98.5 7E-08 2.4E-12 74.8 3.4 67 170-249 36-102 (109)
21 3h0g_G DNA-directed RNA polyme 98.4 2E-07 6.8E-12 78.1 4.9 72 166-243 85-158 (172)
22 3aev_A Translation initiation 98.4 3E-07 1E-11 82.5 6.2 70 169-250 15-85 (275)
23 1wi5_A RRP5 protein homolog; S 98.4 2.5E-07 8.4E-12 72.8 4.2 73 168-251 24-96 (119)
24 1q8k_A Eukaryotic translation 98.3 4.8E-07 1.6E-11 82.4 5.5 70 169-250 17-87 (308)
25 3bzc_A TEX; helix-turn-helix, 98.2 5E-07 1.7E-11 91.5 3.6 73 168-253 657-729 (785)
26 3go5_A Multidomain protein wit 98.2 1.7E-06 5.9E-11 78.0 6.4 80 167-269 154-234 (285)
27 3psi_A Transcription elongatio 98.1 1.4E-06 4.9E-11 91.8 4.6 73 167-251 904-976 (1219)
28 3psf_A Transcription elongatio 98.0 6.6E-07 2.2E-11 93.0 0.0 75 167-253 907-981 (1030)
29 3cw2_C Translation initiation 98.0 1.1E-06 3.8E-11 78.6 1.0 71 168-250 14-85 (266)
30 4aid_A Polyribonucleotide nucl 98.0 1.2E-06 4.3E-11 87.9 1.0 69 168-250 640-708 (726)
31 3cdi_A Polynucleotide phosphor 97.8 3.2E-06 1.1E-10 85.1 0.0 70 167-250 629-698 (723)
32 1e3p_A Guanosine pentaphosphat 97.7 3.2E-06 1.1E-10 85.5 -1.7 69 168-250 670-742 (757)
33 3m7n_A Putative uncharacterize 97.0 0.00065 2.2E-08 56.9 4.8 69 166-251 58-135 (179)
34 2nn6_I 3'-5' exoribonuclease C 97.0 0.00048 1.6E-08 59.2 4.1 74 168-251 84-164 (209)
35 2je6_I RRP4, exosome complex R 96.2 0.0031 1.1E-07 55.6 3.8 74 167-251 76-149 (251)
36 3go5_A Multidomain protein wit 96.2 0.007 2.4E-07 54.3 6.1 71 161-249 64-136 (285)
37 2z0s_A Probable exosome comple 96.0 0.0048 1.6E-07 53.8 4.0 74 168-251 69-142 (235)
38 2ba0_A Archeal exosome RNA bin 96.0 0.009 3.1E-07 51.9 5.6 72 167-251 59-130 (229)
39 1hh2_P NUSA, N utilization sub 95.7 0.0097 3.3E-07 54.7 5.1 61 170-250 139-201 (344)
40 2bx2_L Ribonuclease E, RNAse E 92.0 0.17 5.8E-06 48.9 5.4 63 168-232 48-112 (517)
41 2bh8_A 1B11; transcription, mo 91.4 0.065 2.2E-06 40.3 1.5 31 167-198 63-93 (101)
42 2nn6_H Exosome complex exonucl 90.2 0.25 8.6E-06 44.6 4.4 77 167-250 97-176 (308)
43 1k0r_A NUSA; two component arr 89.3 0.28 9.5E-06 45.3 4.0 63 170-250 135-205 (366)
44 2asb_A Transcription elongatio 89.0 0.31 1.1E-05 42.7 3.9 65 169-251 11-83 (251)
45 1jjg_A M156R; beta barrel, S1 84.6 1.8 6E-05 31.9 5.2 53 175-239 41-94 (102)
46 3i4o_A Translation initiation 80.9 1.5 5.1E-05 31.4 3.6 61 170-247 17-78 (79)
47 2ja9_A Exosome complex exonucl 80.8 2.2 7.7E-05 35.1 5.2 67 169-249 11-77 (175)
48 2rf4_A DNA-directed RNA polyme 79.2 2.1 7.3E-05 36.3 4.7 70 161-238 126-201 (214)
49 2bh8_A 1B11; transcription, mo 74.2 4.8 0.00016 29.8 4.9 54 170-238 18-74 (101)
50 2ytx_A Cold shock domain-conta 65.6 16 0.00056 26.8 6.2 63 170-250 20-83 (97)
51 1d7q_A Translation initiation 62.2 21 0.00072 28.3 6.6 66 168-251 32-98 (143)
52 2k5n_A Putative cold-shock pro 56.2 47 0.0016 23.0 7.0 13 220-232 39-51 (74)
53 2dgy_A MGC11102 protein; EIF-1 53.3 32 0.0011 26.0 6.0 65 168-250 16-82 (111)
54 1wfq_A UNR protein; beta-barre 52.3 49 0.0017 23.8 6.6 47 170-232 20-67 (89)
55 1jt8_A EIF-1A, probable transl 44.9 5.3 0.00018 30.0 0.4 72 160-249 13-86 (102)
56 3h8z_A FragIle X mental retard 41.9 32 0.0011 26.7 4.4 51 168-231 17-71 (128)
57 2eqk_A Tudor domain-containing 41.1 23 0.0008 25.5 3.3 40 158-198 29-69 (85)
58 2oqk_A Putative translation in 38.0 39 0.0013 25.6 4.4 61 170-248 35-96 (117)
59 3cam_A Cold-shock domain famil 37.2 90 0.0031 20.9 5.8 47 171-232 4-53 (67)
60 3d0f_A Penicillin-binding 1 tr 36.6 21 0.00071 26.3 2.6 52 172-230 40-93 (106)
61 1ah9_A IF1, initiation factor 36.0 48 0.0017 22.5 4.3 48 170-232 9-57 (71)
62 1g6p_A Cold shock protein TMCS 35.1 90 0.0031 20.8 5.5 14 219-232 38-51 (66)
63 3a0j_A Cold shock protein; OB- 35.0 1.1E+02 0.0036 20.9 7.6 47 171-232 4-52 (73)
64 2p9r_A Alpha-2-M, alpha-2-macr 34.7 78 0.0027 22.6 5.5 33 218-250 10-45 (102)
65 2yty_A Cold shock domain-conta 32.8 46 0.0016 23.8 3.8 48 169-232 19-67 (88)
66 2kcm_A Cold shock domain famil 32.3 49 0.0017 22.9 3.8 30 219-250 39-68 (74)
67 2jpp_A Translational repressor 30.0 75 0.0026 22.0 4.3 30 218-251 9-38 (70)
68 2bti_A Carbon storage regulato 27.0 88 0.003 21.1 4.1 30 218-251 11-40 (63)
69 3kq0_A Alpha-1-acid glycoprote 26.7 42 0.0014 26.9 3.1 30 3-32 124-153 (192)
70 2nn6_G Exosome complex exonucl 24.3 78 0.0027 27.9 4.5 67 168-249 130-196 (289)
71 2kgf_A Capsid protein P27; ret 24.0 42 0.0014 26.5 2.4 26 6-31 13-38 (140)
72 2ytv_A Cold shock domain-conta 23.3 44 0.0015 23.4 2.2 46 170-232 10-57 (79)
73 3pnw_C Tudor domain-containing 22.3 80 0.0028 21.9 3.4 32 167-198 33-66 (77)
74 1fd9_A Protein (macrophage inf 21.9 3.3E+02 0.011 22.4 7.9 23 256-278 157-179 (213)
75 1vpz_A Carbon storage regulato 21.0 1.1E+02 0.0038 21.3 3.8 30 218-251 21-50 (73)
76 1xki_A VON ebner'S gland prote 20.8 83 0.0028 24.2 3.7 29 4-32 110-138 (162)
No 1
>2vnu_D Exosome complex exonuclease RRP44; hydrolase-RNA complex, RNA degradation, RNA-binding, RNA Pro; HET: 1PE; 2.30A {Saccharomyces cerevisiae} SCOP: b.40.4.5 b.40.4.5 b.40.4.5 b.40.4.16
Probab=100.00 E-value=1.2e-48 Score=396.29 Aligned_cols=220 Identities=40% Similarity=0.601 Sum_probs=192.3
Q ss_pred ceeEEeeCCCCCccCHHHHHHHHHHc-CCcccCCCHHHHHHHHHhh----------------------ccccccCcCCCC
Q psy4846 2 DNAMLRRHPVPPPANFEPLLHAARRQ-GFELSVGTGKELATSLDAA----------------------AVYFSSGMLQQS 58 (279)
Q Consensus 2 ~~al~R~H~~P~~~~~~~l~~~~~~~-g~~~~~~~~~~l~~~L~~~----------------------A~Y~~~~~~~~~ 58 (279)
.+++||+|++|++++++.|.++++.+ |+.++..++++|+.+|+++ |+|+++|.++++
T Consensus 507 ~~~l~R~h~~P~~~~l~~l~~~~~~~~g~~l~~~~~~~l~~~l~~~~~~~~~~~~~ll~~~~~r~m~~A~Y~~~g~~~~~ 586 (760)
T 2vnu_D 507 QTAMLRRHAAPPSTNFEILNEMLNTRKNMSISLESSKALADSLDRCVDPEDPYFNTLVRIMSTRCMMAAQYFYSGAYSYP 586 (760)
T ss_dssp TTCEEEEBCCCCGGGGHHHHHHHHHHHSCCCCCSCHHHHHHHHHTCCBTTBTTHHHHHHHHHHTTSCCCEEEEGGGSCGG
T ss_pred CCeeEEecCCCCHHHHHHHHHHHHHccCCCcCCCCHHHHHHHHHHhhCCchHHHHHHHHHHHHHhhhCccccccCcCCCC
Confidence 36899999999999999999999999 9999888888888887731 999999988899
Q ss_pred CccccccCCCCccccccCccccchHHHHHHHHHHHcCCCCCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy4846 59 DFHHYGLATPIYTHFTSPIRRYADIIVHRLLAACIGADATYPSLLDKKASTALCYNLNYRNRQAQYAGRASVALHTHLFF 138 (279)
Q Consensus 59 ~~~H~gL~~~~YthfTSPIRRY~DlivHR~L~a~l~~~~~~~~~~~~~~l~~~~~~~n~~~r~a~~aer~~~~~~~~~~l 138 (279)
+.||||||+++|||||||||||+||+|||||+++|++....+...+.+.|..+|.+||.++++|+.|||++.++|++.||
T Consensus 587 ~~~HfgLa~~~YtHfTSPIRRY~DLivHR~L~~~l~~~~~~~~~~~~~~l~~~~~~~s~~er~A~~aer~~~~~~~~~~l 666 (760)
T 2vnu_D 587 DFRHYGLAVDIYTHFTSPIRRYCDVVAHRQLAGAIGYEPLSLTHRDKNKMDMICRNINRKHRNAQFAGRASIEYYVGQVM 666 (760)
T ss_dssp GGCBTTTTBSCCCCCSCTTTBHHHHHHHHHHHHHTTSSCCCGGGGCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCceecCCCceeccCchHhhhHHHHHHHHHHHHHccCCCcccccCHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHh
Confidence 99999999999999999999999999999999999765432333456889999999999999999999999999999999
Q ss_pred hhccceeeEEEEEeecchhhhhcCCCcccCCcceEEEEEeCeEEEEecCcceeEEEEcccCC--CCCceeeecCCceEee
Q psy4846 139 RSRVQDEDGYVLYVRKNALQILIPKSRVQDEDGYVLYVRKNALQILIPKYGLEGTLFLRCDS--PSVSWTYNEKEQSQSC 216 (279)
Q Consensus 139 ~~~~~~~~g~V~~~~~~~~~~~~p~~~~~~~~g~V~~V~~~Gi~V~Lp~~giEG~V~l~~~~--~~d~~~~~~~~~~l~~ 216 (279)
+.++..++|+|+ +|+++|+||.||++|+||+||+++ + ++++|.||+.++++++
T Consensus 667 ~~~~~~~~g~V~------------------------~V~~~G~fV~l~~~giEGlVhis~-L~~~~d~~~fd~~~~~l~g 721 (760)
T 2vnu_D 667 RNNESTETGYVI------------------------KVFNNGIVVLVPKFGVEGLIRLDN-LTEDPNSAAFDEVEYKLTF 721 (760)
T ss_dssp HTCCSEEEEEEE------------------------EEETTEEEEEETTTTEEEEEEHHH-HCSCGGGCEEETTTTEEEE
T ss_pred hcCceEEEEEEE------------------------EEECCeEEEEEeCCCcEEEEEecc-ccCCCceeEEcccccEEEE
Confidence 998867888888 999999999999999999999998 5 4789999999999987
Q ss_pred c------CeEecCCCeEEEEEEeccccCC---CCeEEEEEe
Q psy4846 217 G------SVVFHSFDPVTVQLSLDRSNVQ---HEKLVLRLV 248 (279)
Q Consensus 217 ~------~~~~~lGD~V~VkV~~~~vd~~---~~~I~~~lv 248 (279)
. +.+|++||+|+|+|. .+|.+ +++|.|+++
T Consensus 722 ~~~~~~~~~~~~lGD~V~VkV~--~vd~~~~~~~kI~lslk 760 (760)
T 2vnu_D 722 VPTNSDKPRDVYVFDKVEVQVR--SVMDPITSKRKAELLLK 760 (760)
T ss_dssp CCTTCSSCEEEETTCEEEEEEC----------CCEEEC---
T ss_pred ecCCCccCcEEecCCEEEEEEE--EEECccccCCcEEEEeC
Confidence 4 378999999999998 88887 699999874
No 2
>2wp8_J Exosome complex exonuclease DIS3; nucleus, hydrolase, RNA-binding, exonucle binding, mitochondrion, rRNA processing; 3.00A {Saccharomyces cerevisiae}
Probab=100.00 E-value=6.9e-48 Score=397.88 Aligned_cols=220 Identities=40% Similarity=0.602 Sum_probs=197.3
Q ss_pred ceeEEeeCCCCCccCHHHHHHHHHHc-CCcccCCCHHHHHHHHHhh----------------------ccccccCcCCCC
Q psy4846 2 DNAMLRRHPVPPPANFEPLLHAARRQ-GFELSVGTGKELATSLDAA----------------------AVYFSSGMLQQS 58 (279)
Q Consensus 2 ~~al~R~H~~P~~~~~~~l~~~~~~~-g~~~~~~~~~~l~~~L~~~----------------------A~Y~~~~~~~~~ 58 (279)
.+++||+|++|++++++.|.++++.+ |+.++..++++|+.+|+++ |+|+++|.++++
T Consensus 724 ~~~lyR~h~~P~~~kl~~l~~~~~~~~G~~l~~~~~~~l~~~L~~~~~~~~~~~~~ll~~~~lrsm~~A~Y~~sg~~s~~ 803 (977)
T 2wp8_J 724 QTAMLRRHAAPPSTNFEILNEMLNTRKNMSISLESSKALADSLDRCVDPEDPYFNTLVRIMSTRCMMAAQYFYSGAYSYP 803 (977)
T ss_dssp TTCEEEEBCCCCGGGGHHHHHHHHHHHSCCCCCSSHHHHHHHHHHCCCSSCTTHHHHHHHHHHTTSCCCEEEEGGGSCGG
T ss_pred CCeEEEeCCCCCHHHHHHHHHHHHHccCCCCCCCCHHHHHHHHHHhhCCchHHHHHHHHHHHHHhccCceeecccccCCC
Confidence 36899999999999999999999999 9999888888888887731 999999988899
Q ss_pred CccccccCCCCccccccCccccchHHHHHHHHHHHcCCCCCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy4846 59 DFHHYGLATPIYTHFTSPIRRYADIIVHRLLAACIGADATYPSLLDKKASTALCYNLNYRNRQAQYAGRASVALHTHLFF 138 (279)
Q Consensus 59 ~~~H~gL~~~~YthfTSPIRRY~DlivHR~L~a~l~~~~~~~~~~~~~~l~~~~~~~n~~~r~a~~aer~~~~~~~~~~l 138 (279)
+.||||||+++|||||||||||+||+|||||+++|++....+...+.+.|..+|.+||.++++|+.|||++.++|++.||
T Consensus 804 ~~gHfgLa~~~YtHfTSPIRRY~DLivHR~L~a~L~~~~~~~~~~~~~~l~~i~~~~s~~er~A~~aeR~~~~~~~~~~l 883 (977)
T 2wp8_J 804 DFRHYGLAVDIYTHFTSPIRRYCDVVAHRQLAGAIGYEPLSLTHRDKNKMDMICRNINRKHRNAQFAGRASIEYYVGQVM 883 (977)
T ss_dssp GSCBTTTTBSSCCCCSCTTTBHHHHHHHHHHHHHTTSSCCCGGGGCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCceecCCCCeeccCchHhhHHHHHHHHHHHHHhcCCCCcccccCHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHhhhh
Confidence 99999999999999999999999999999999999765433333567889999999999999999999999999999999
Q ss_pred hhccceeeEEEEEeecchhhhhcCCCcccCCcceEEEEEeCeEEEEecCcceeEEEEcccCCC--CCceeeecCCceEee
Q psy4846 139 RSRVQDEDGYVLYVRKNALQILIPKSRVQDEDGYVLYVRKNALQILIPKYGLEGTLFLRCDSP--SVSWTYNEKEQSQSC 216 (279)
Q Consensus 139 ~~~~~~~~g~V~~~~~~~~~~~~p~~~~~~~~g~V~~V~~~Gi~V~Lp~~giEG~V~l~~~~~--~d~~~~~~~~~~l~~ 216 (279)
+.+...++|+|+ +|+++|+||+||++|+||+||+++ ++ +++|.||+.++.+++
T Consensus 884 ~~~ge~~~g~V~------------------------~V~~~G~fV~L~~~giEGlVhis~-L~~~~d~y~fde~~~~L~g 938 (977)
T 2wp8_J 884 RNNESTETGYVI------------------------KVFNNGIVVLVPKFGVEGLIRLDN-LTEDPNSAAFDEVEYKLTF 938 (977)
T ss_dssp HHTTCEEEEEEE------------------------EECSSEEEEECTTTCCEEEEEGGG-TCSCGGGCEEETTTTEEEE
T ss_pred cccceEEEEEEE------------------------EEcCCeEEEEEcCCCeEEEEEecc-ccCCCceeEEcccccEEEe
Confidence 998556888888 999999999999999999999998 65 789999999999988
Q ss_pred cC------eEecCCCeEEEEEEeccccC--C-CCeEEEEEe
Q psy4846 217 GS------VVFHSFDPVTVQLSLDRSNV--Q-HEKLVLRLV 248 (279)
Q Consensus 217 ~~------~~~~lGD~V~VkV~~~~vd~--~-~~~I~~~lv 248 (279)
.. .+|++||+|+|+|. .++. . +++|.|+++
T Consensus 939 ~~~~g~~~~~~~lGD~V~VkV~--~vd~~~~~~~kI~Lslk 977 (977)
T 2wp8_J 939 VPTNSDKPRDVYVFDKVEVQVR--SVMDPITSKRKAELLLK 977 (977)
T ss_dssp CCTTCCSCEEEETTCEEEEEEC--CCCCSSSCCCCCCEEEC
T ss_pred ecCCCccCcEEccCCEEEEEEE--EEcCcccCCCceEEEeC
Confidence 63 78999999999997 6765 3 378999874
No 3
>2id0_A Exoribonuclease 2; RNAse, exonuclease, hydrolyase, mRNA decay, RNR family, hydrolase; 2.35A {Escherichia coli} SCOP: b.40.4.5 b.40.4.5 b.40.4.5 b.40.4.16 PDB: 2ix0_A* 2ix1_A
Probab=100.00 E-value=3.8e-45 Score=365.12 Aligned_cols=214 Identities=17% Similarity=0.246 Sum_probs=181.6
Q ss_pred eeEEeeCCCCCccCHHHHHHHHHHcCCcccCC---CHHHHHHHHHhh------------ccccccCcCCCCCccccccCC
Q psy4846 3 NAMLRRHPVPPPANFEPLLHAARRQGFELSVG---TGKELATSLDAA------------AVYFSSGMLQQSDFHHYGLAT 67 (279)
Q Consensus 3 ~al~R~H~~P~~~~~~~l~~~~~~~g~~~~~~---~~~~l~~~L~~~------------A~Y~~~~~~~~~~~~H~gL~~ 67 (279)
+++||+|++|+++++++|.++++.+|++++.+ +++.++..++.+ -++...+.+++++.||||||+
T Consensus 410 ~~lyR~h~~p~~~~l~~l~~~~~~~g~~l~~~~~~~~~~~~~l~~~~~~~~~~~l~~~l~r~~~~a~ys~~~~~HfgLa~ 489 (644)
T 2id0_A 410 FGIYNVHMGFDPANADALAALLKTHGLHVDAEEVLTLDGFCKLRRELDAQPTGFLDSRIRRFQSFAEISTEPGPHFGLGL 489 (644)
T ss_dssp CCCEEEBCCBCTTTHHHHHHHHHHHTCCCCHHHHTSHHHHHHHHHHHHTSSSSHHHHHHTTSBCCCEEESSCCCBTTTTB
T ss_pred CceeecCCCCCHHHHHHHHHHHHHcCCCCCCCcccCHHHHHHHHHHhcCChHHHHHHHHHHhcccccccCCCCCchhcCC
Confidence 68999999999999999999999999998643 244555554433 334445556789999999999
Q ss_pred CCccccccCccccchHHHHHHHHHHHcCCCCCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccc---e
Q psy4846 68 PIYTHFTSPIRRYADIIVHRLLAACIGADATYPSLLDKKASTALCYNLNYRNRQAQYAGRASVALHTHLFFRSRVQ---D 144 (279)
Q Consensus 68 ~~YthfTSPIRRY~DlivHR~L~a~l~~~~~~~~~~~~~~l~~~~~~~n~~~r~a~~aer~~~~~~~~~~l~~~~~---~ 144 (279)
+.|||||||||||+||+|||||+++|.+++.. . . ..++|.+||.++++|+.|||++.++|++.||+.+++ .
T Consensus 490 ~~YthfTSPIRRY~DLivHR~l~a~l~~~~~~-~-~----~~~~~~~~s~~er~a~~aer~~~~~~~~~~l~~~vGe~~~ 563 (644)
T 2id0_A 490 EAYATWTSPIRKYGDMINHRLLKAVIKGETAT-R-P----QDEITVQMAERRRLNRMAERDVGDWLYARFLKDKAGTDTR 563 (644)
T ss_dssp SSCBCCSCTTTBHHHHHHHHHHHHHTTC-----C-C----CTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHGGGTTSCCC
T ss_pred CceeeeCChhhcchHHHHHHHHHHHHcCCCCC-c-c----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCce
Confidence 99999999999999999999999999765321 1 1 257899999999999999999999999999999875 5
Q ss_pred eeEEEEEeecchhhhhcCCCcccCCcceEEEEEeCeEEEEecCcceeEEEEcccCCC--CCceeeecCCceEeec-CeEe
Q psy4846 145 EDGYVLYVRKNALQILIPKSRVQDEDGYVLYVRKNALQILIPKYGLEGTLFLRCDSP--SVSWTYNEKEQSQSCG-SVVF 221 (279)
Q Consensus 145 ~~g~V~~~~~~~~~~~~p~~~~~~~~g~V~~V~~~Gi~V~Lp~~giEG~V~l~~~~~--~d~~~~~~~~~~l~~~-~~~~ 221 (279)
++|+|+ +|+++|+||.|+++|+||+||+++ ++ ++||.||+....++.. +..|
T Consensus 564 f~g~V~------------------------~V~~~G~fV~L~~~gieGlVhis~-l~~~~d~~~~d~~~~~l~~~~~~~~ 618 (644)
T 2id0_A 564 FAAEIV------------------------DISRGGMRVRLVDNGAIAFIPAPF-LHAVRDELVCSQENGTVQIKGETVY 618 (644)
T ss_dssp EEEEEE------------------------EEETTEEEEEETTTCCEEEEEGGG-TCSCGGGEEEETTTTEEEETTEEEE
T ss_pred EEEEEE------------------------EEeCCceEEEEcCCcEEEEEEchh-ccCcCceeEEcccccEEEecCCCEe
Confidence 888887 999999999999999999999998 65 4899999999988434 5789
Q ss_pred cCCCeEEEEEEeccccCCCCeEEEEEec
Q psy4846 222 HSFDPVTVQLSLDRSNVQHEKLVLRLVR 249 (279)
Q Consensus 222 ~lGD~V~VkV~~~~vd~~~~~I~~~lv~ 249 (279)
++||+|+|+|. ++|+.+++|.|++++
T Consensus 619 ~lGD~V~VkV~--~vd~~~~~I~~~l~~ 644 (644)
T 2id0_A 619 KVTDVIDVTIA--EVRMETRSIIARPVA 644 (644)
T ss_dssp ETTCEEEEEEE--EEETTTTEEEEEECC
T ss_pred CCCCEEEEEEE--EEeCCCCEEEEEEcC
Confidence 99999999998 999999999999863
No 4
>2r7d_A Ribonuclease II family protein; structural genomics, PSI-2, structure initiative, northeast structural genomics consort NESG; 1.80A {Deinococcus radiodurans R1} SCOP: b.40.4.5 b.40.4.16 PDB: 2r7f_A
Probab=100.00 E-value=3.5e-35 Score=283.27 Aligned_cols=174 Identities=20% Similarity=0.184 Sum_probs=136.7
Q ss_pred eeEEeeCCCCCccCHHHHHHHHHHcCCcccCCCHHHHHHHHHhh---ccccccCcCCCCCccccccCCCCccccccCccc
Q psy4846 3 NAMLRRHPVPPPANFEPLLHAARRQGFELSVGTGKELATSLDAA---AVYFSSGMLQQSDFHHYGLATPIYTHFTSPIRR 79 (279)
Q Consensus 3 ~al~R~H~~P~~~~~~~l~~~~~~~g~~~~~~~~~~l~~~L~~~---A~Y~~~~~~~~~~~~H~gL~~~~YthfTSPIRR 79 (279)
+.+||+|++|+.+++ +....++..+.+. |+|. +++.+|||||++.||||||||||
T Consensus 287 p~~yR~h~~p~~~~~----------------~~~~~~~~~l~r~m~~a~y~------~~~~~HfgL~~~~YthfTSPIRR 344 (469)
T 2r7d_A 287 PLPFATQDYPTREVA----------------GDTLPAMWARRKTLARTRFQ------PSPGPHHGMGLDLYAQATSPMRR 344 (469)
T ss_dssp CCCEEEECCCSSCCC----------------CCSHHHHHHHHHHCCCEEEE------SSCCCBTTTTBSCCCCCSCTTTB
T ss_pred CeeEeeCCCCCcccC----------------cchHHHHHHHHHhccccccc------CCCCCchhhCccceeeECCcccc
Confidence 357999999998886 1112233333332 7885 57899999999999999999999
Q ss_pred cchHHHHHHHHHHHcCCCCCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccc-eeeEEEEEeecchhh
Q psy4846 80 YADIIVHRLLAACIGADATYPSLLDKKASTALCYNLNYRNRQAQYAGRASVALHTHLFFRSRVQ-DEDGYVLYVRKNALQ 158 (279)
Q Consensus 80 Y~DlivHR~L~a~l~~~~~~~~~~~~~~l~~~~~~~n~~~r~a~~aer~~~~~~~~~~l~~~~~-~~~g~V~~~~~~~~~ 158 (279)
|+||+|||||+++|.++.. ++.+.+..+|.+||.++++|+.|||++.++|++.||+++++ .|+|+|+
T Consensus 345 Y~DLivHr~L~a~l~~~~~----~~~~~l~~~~~~~~~~er~a~~aer~~~~~~~~~~l~~~~g~~f~g~vv-------- 412 (469)
T 2r7d_A 345 YLDLVVHQQLRAFLAGRDP----LSSKVMAAHIAESQMNADATRQAERLSRRHHTLRFIAAQPERVWDAVVV-------- 412 (469)
T ss_dssp HHHHHHHHHHHHHHTTCCC----CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCTTCCEEEEEE--------
T ss_pred cHHHHHHHHHHHHHcCCCC----CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCEEEEEEE--------
Confidence 9999999999999987532 45788999999999999999999999999999999999875 5888877
Q ss_pred hhcCCCcccCCcceEEEEEeCeEEEEecCcceeEEEEcccCCCCCceeeecCCceEeecCeEecCCCeEEEEEEeccccC
Q psy4846 159 ILIPKSRVQDEDGYVLYVRKNALQILIPKYGLEGTLFLRCDSPSVSWTYNEKEQSQSCGSVVFHSFDPVTVQLSLDRSNV 238 (279)
Q Consensus 159 ~~~p~~~~~~~~g~V~~V~~~Gi~V~Lp~~giEG~V~l~~~~~~d~~~~~~~~~~l~~~~~~~~lGD~V~VkV~~~~vd~ 238 (279)
.+..+ +|+|++++ ++.+ + . .+..|++||+|+|+|. ++|+
T Consensus 413 ----------------~l~~~-----------~glV~v~~-l~~d-~-------~---~~~~~~lGd~V~V~v~--~vd~ 451 (469)
T 2r7d_A 413 ----------------DRRGA-----------QATLLIPD-LAFD-V-------Q---VNTPAAPGTALQVQFA--DIDL 451 (469)
T ss_dssp ----------------EEETT-----------EEEEEEGG-GTEE-E-------E---EECCCCTTCEEEEEEE--EEET
T ss_pred ----------------EEeCc-----------EEEEEECC-CCeE-E-------e---cCCcCCCCCEEEEEEE--EEcc
Confidence 44433 45555554 3211 0 0 1347999999999998 9999
Q ss_pred CCCeEEEEEecCC
Q psy4846 239 QHEKLVLRLVRPV 251 (279)
Q Consensus 239 ~~~~I~~~lv~~~ 251 (279)
.+++|+|+++-.+
T Consensus 452 ~~~~i~f~~~~~~ 464 (469)
T 2r7d_A 452 PQMRVRARSVLEH 464 (469)
T ss_dssp TTTEEEEEECCC-
T ss_pred CCCEEEEEEEhhh
Confidence 9999999987543
No 5
>1luz_A Protein K3, protein K2; stranded anti-parallel beta barrel, viral protein; 1.80A {Vaccinia virus} SCOP: b.40.4.5
Probab=98.95 E-value=2.4e-10 Score=85.73 Aligned_cols=69 Identities=17% Similarity=0.101 Sum_probs=56.5
Q ss_pred cCCcceEEEEEeCeEEEEecCc-ceeEEEEcc-cCCCCCceeeecCCceEeecCeEecCCCeEEEEEEeccccCCCCeEE
Q psy4846 167 QDEDGYVLYVRKNALQILIPKY-GLEGTLFLR-CDSPSVSWTYNEKEQSQSCGSVVFHSFDPVTVQLSLDRSNVQHEKLV 244 (279)
Q Consensus 167 ~~~~g~V~~V~~~Gi~V~Lp~~-giEG~V~l~-~~~~~d~~~~~~~~~~l~~~~~~~~lGD~V~VkV~~~~vd~~~~~I~ 244 (279)
+.+.|.|+ |+++|+||.|+++ |++|+||++ + +..+++.+. ...+ +||.|+|+|. ++|.++++|.
T Consensus 13 ~~~~G~V~-v~~fG~FVel~~~~~~eGLvhis~e-l~~~~~~~~---------~~~~-~Gd~V~VkV~--~vd~~~~kI~ 78 (88)
T 1luz_A 13 DVIKGRVY-EKDYALYIYLFDYPHFEAILAESVK-MHMDRYVEY---------RDKL-VGKTVKVKVI--RVDYTKGYID 78 (88)
T ss_dssp CEEEEEEE-EETTEEEEEETTCTTSEEEEGGGSS-CCHHHHHHH---------HHHH-TTCEEEEEEE--EEETTTTEEE
T ss_pred CEEEEEEE-EEccEEEEEECCCCCeEEEEEeeHH-hCcccccCH---------hHEe-CCCEEEEEEE--EEECCCCEEE
Confidence 34688899 9999999999886 899999999 8 543433221 2356 9999999998 9999999999
Q ss_pred EEEec
Q psy4846 245 LRLVR 249 (279)
Q Consensus 245 ~~lv~ 249 (279)
|++++
T Consensus 79 lslk~ 83 (88)
T 1luz_A 79 VNYKR 83 (88)
T ss_dssp EEEEE
T ss_pred EEEee
Confidence 99986
No 6
>4ayb_E DNA-directed RNA polymerase; transferase, multi-subunit, transcription; 3.20A {Sulfolobus shibatae} PDB: 2y0s_E 4b1o_E 4b1p_T 2waq_E 2wb1_E 2pmz_E 3hkz_E
Probab=98.91 E-value=3e-09 Score=89.72 Aligned_cols=80 Identities=14% Similarity=0.173 Sum_probs=68.0
Q ss_pred cCCcceEEEEEeCeEEEEecCcceeEEEEcccCCCCCceeeecCCceEeec--CeEecCCCeEEEEEEeccccCC----C
Q psy4846 167 QDEDGYVLYVRKNALQILIPKYGLEGTLFLRCDSPSVSWTYNEKEQSQSCG--SVVFHSFDPVTVQLSLDRSNVQ----H 240 (279)
Q Consensus 167 ~~~~g~V~~V~~~Gi~V~Lp~~giEG~V~l~~~~~~d~~~~~~~~~~l~~~--~~~~~lGD~V~VkV~~~~vd~~----~ 240 (279)
..++|.|.+++++|+||.+. +++|+||.++ ++++++.||+..+.+.++ +..+++||.|+|+|. ++|.. .
T Consensus 83 ev~~G~V~~v~~~G~fv~l~--~~~glvh~s~-l~~d~~~~d~~~~~~~g~~~~~~~~~Gd~VrvkV~--~v~~~~~~~~ 157 (180)
T 4ayb_E 83 EVVEGEVLQVDNYGVFVNLG--PMDGLVHISQ-ITDDTLKYDNVRGIIFGEKSKKVIQKGDKVRARVI--SVASTVTGRL 157 (180)
T ss_dssp CEEEEEEEEEETTEEEEECS--SSEEEEEGGG-SCSSCEEECSSSCCEEETTTCCCCCTTCEEEEEEE--EECC------
T ss_pred CEEEEEEeeeccceEEEEEC--CccceEEeee-cCCCccccchhcceEEEeccCeEECCCCEEEEEEE--EEeCCCCccc
Confidence 45689999999999999986 5899999998 888999999999999986 678999999999998 77753 4
Q ss_pred CeEEEEEecCC
Q psy4846 241 EKLVLRLVRPV 251 (279)
Q Consensus 241 ~~I~~~lv~~~ 251 (279)
.+|.+++.+|.
T Consensus 158 ~rI~ls~k~~g 168 (180)
T 4ayb_E 158 PRIALTMRQPY 168 (180)
T ss_dssp -CEEEECCSTT
T ss_pred CcEEEEcCCCC
Confidence 58889988764
No 7
>2k52_A Uncharacterized protein MJ1198; metal-binding, zinc, zinc-finger, structural genomics, PSI-2, protein structure initiative; NMR {Methanocaldococcus jannaschii}
Probab=98.85 E-value=7.1e-09 Score=76.00 Aligned_cols=66 Identities=17% Similarity=0.099 Sum_probs=54.9
Q ss_pred CCcceEEEEEeCeEEEEecCcceeEEEEcccCCCCCceeeecCCceEeecCeEecCCCeEEEEEEeccccCCCCeEEEEE
Q psy4846 168 DEDGYVLYVRKNALQILIPKYGLEGTLFLRCDSPSVSWTYNEKEQSQSCGSVVFHSFDPVTVQLSLDRSNVQHEKLVLRL 247 (279)
Q Consensus 168 ~~~g~V~~V~~~Gi~V~Lp~~giEG~V~l~~~~~~d~~~~~~~~~~l~~~~~~~~lGD~V~VkV~~~~vd~~~~~I~~~l 247 (279)
.+.|.|.+++++|+||.|++ +++|+||+++ +..++. ..|++||.|+|+|. ++|..+++|.|++
T Consensus 8 iv~G~V~~v~~~G~fV~l~~-~~~Gllh~se-l~~~~~-------------~~~~~Gd~V~v~V~--~vd~~~~~i~lsl 70 (80)
T 2k52_A 8 FYKGVVTRIEKYGAFINLNE-QVRGLLRPRD-MISLRL-------------ENLNVGDEIIVQAI--DVRPEKREIDFKY 70 (80)
T ss_dssp EEEEEEEEEETTEEEEEEET-TEEEEECGGG-CSSCCG-------------GGCCTTCEEEEEEE--EEETTTTEEEEEE
T ss_pred EEEEEEEEEeCCEEEEEECC-CCEEEEEHHH-CCcccc-------------eeeCCCCEEEEEEE--EEECCCCEEEEEE
Confidence 35677779999999999987 8999999998 432211 36899999999998 9999999999999
Q ss_pred ecC
Q psy4846 248 VRP 250 (279)
Q Consensus 248 v~~ 250 (279)
+..
T Consensus 71 ~~~ 73 (80)
T 2k52_A 71 IPL 73 (80)
T ss_dssp CSC
T ss_pred eec
Confidence 864
No 8
>2ckz_B C25, DNA-directed RNA polymerase III 25 KD polypeptide; multiprotein complex, nucleotidyltransferase, nuclear protein, hypothetical protein; 3.2A {Saccharomyces cerevisiae}
Probab=98.85 E-value=3e-09 Score=92.54 Aligned_cols=70 Identities=7% Similarity=0.096 Sum_probs=59.8
Q ss_pred CCcceEEEEEeCeEEEEecCcceeEEEEcccCCCCCceeeecCCceEee---c--CeEecCCCeEEEEEEeccccCCCC
Q psy4846 168 DEDGYVLYVRKNALQILIPKYGLEGTLFLRCDSPSVSWTYNEKEQSQSC---G--SVVFHSFDPVTVQLSLDRSNVQHE 241 (279)
Q Consensus 168 ~~~g~V~~V~~~Gi~V~Lp~~giEG~V~l~~~~~~d~~~~~~~~~~l~~---~--~~~~~lGD~V~VkV~~~~vd~~~~ 241 (279)
.++|.|.+|+++|+||.|++ .++|+++.++ +.+++|.||+..+.+++ + +..|++||+|+|+|. +++...+
T Consensus 84 v~~G~Is~Vt~fGifVeL~g-~~eglv~~s~-l~~d~~~fd~~~~~~vg~~~e~t~~~~~~Gd~VrvrV~--~v~~~~~ 158 (218)
T 2ckz_B 84 IVTGWISKCTAEGIKVSLLG-IFDDIFIPQN-MLFEGCYYTPEESAWIWPMDEETKLYFDVNEKIRFRIE--REVFVDV 158 (218)
T ss_dssp EEEEEEEEEETTEEEEECTT-SCCCEEEETT-TSCTTCEEETTTTEEEEECC--CEEEECTTCEEEEEEE--EEEECCC
T ss_pred EEEEEEEEEccCcEEEEccC-ccceEEEcHH-HCCCCcEEcCcCceEEeeccccCCcEEcCCCEEEEEEE--EEEcccC
Confidence 45777779999999999987 5899999998 77789999999999988 4 568999999999998 7776543
No 9
>1go3_E DNA-directed RNA polymerase subunit E; transferase, transferase, transcription; 1.75A {Methanococcus jannaschii} SCOP: b.40.4.5 d.230.1.1
Probab=98.79 E-value=1.9e-08 Score=85.24 Aligned_cols=80 Identities=18% Similarity=0.178 Sum_probs=67.1
Q ss_pred ccCCcceEEEEEeCeEEEEecCcceeEEEEcccCCCCCceeeecCCceEeec--CeEecCCCeEEEEEEeccccCCCC--
Q psy4846 166 VQDEDGYVLYVRKNALQILIPKYGLEGTLFLRCDSPSVSWTYNEKEQSQSCG--SVVFHSFDPVTVQLSLDRSNVQHE-- 241 (279)
Q Consensus 166 ~~~~~g~V~~V~~~Gi~V~Lp~~giEG~V~l~~~~~~d~~~~~~~~~~l~~~--~~~~~lGD~V~VkV~~~~vd~~~~-- 241 (279)
...++|.|++++++|+||.|. +++|+||.++ +..+++.||+..+.+++. +..|++||.|+|+|. ++|..++
T Consensus 82 Gev~~G~V~~v~~~G~fV~l~--~~eglvhis~-l~~~~~~~d~~~~~~~~~~~~~~~~~Gd~V~vkV~--~vd~~~~~p 156 (187)
T 1go3_E 82 YELIEGEVVDVVEFGSFVRLG--PLDGLIHVSQ-IMDDYVSYDPKREAIIGKETGKVLEIGDYVRARIV--AISLKAERK 156 (187)
T ss_dssp TCEEEEEEEEEETTEEEEECS--SSEEEEEGGG-SCSSCEEECCC--CEEETTTCCEECTTCEEEEEEE--EEECCC---
T ss_pred CCEEEEEEEEEeCcEEEEEEc--CccEEEEhHH-hCCCcceECCccceEEecCCCeEEcCCCEEEEEEE--EEEcccCCC
Confidence 345799999999999999995 4899999998 767889999999988875 578999999999998 8887655
Q ss_pred ---eEEEEEecC
Q psy4846 242 ---KLVLRLVRP 250 (279)
Q Consensus 242 ---~I~~~lv~~ 250 (279)
+|.+++.++
T Consensus 157 ~~~~I~lS~k~~ 168 (187)
T 1go3_E 157 RGSKIALTMRQP 168 (187)
T ss_dssp --CEEEEECCST
T ss_pred CccEEEEEEcCC
Confidence 999999875
No 10
>2khi_A 30S ribosomal protein S1; acetylation, phosphoprotein, ribonucleoprotein, RNA-binding; NMR {Escherichia coli}
Probab=98.76 E-value=9.8e-09 Score=80.50 Aligned_cols=70 Identities=20% Similarity=0.161 Sum_probs=55.0
Q ss_pred CcceEEEEEeCeEEEEecCcceeEEEEcccCCCCCceeeecCCceEeecCeEecCCCeEEEEEEeccccCCCCeEEEEEe
Q psy4846 169 EDGYVLYVRKNALQILIPKYGLEGTLFLRCDSPSVSWTYNEKEQSQSCGSVVFHSFDPVTVQLSLDRSNVQHEKLVLRLV 248 (279)
Q Consensus 169 ~~g~V~~V~~~Gi~V~Lp~~giEG~V~l~~~~~~d~~~~~~~~~~l~~~~~~~~lGD~V~VkV~~~~vd~~~~~I~~~lv 248 (279)
+.|.|++|+++|+||.|.+ +++|+||+++ +..+ .. ....+..|++||.|+|+|. ++|.++++|.|+++
T Consensus 34 ~~G~V~~v~~~G~FV~l~~-~~~Glvhise-l~~~-----~~---~~~~~~~~~vGd~V~vkV~--~vd~~~~rI~lslk 101 (115)
T 2khi_A 34 LTGRVTNLTDYGCFVEIEE-GVEGLVHVSE-MDWT-----NK---NIHPSKVVNVGDVVEVMVL--DIDEERRRISLGLK 101 (115)
T ss_dssp EEEEEEEEETTEEEEECST-TCEEEEETTS-SSCS-----ST---TCSSTTTCCTTCEEEEEEE--EEETTTTEEEECCC
T ss_pred EEEEEEEEECCEEEEEECC-CCEEEEEHHH-CCcc-----cc---ccCcccEECCCCEEEEEEE--EEECCCCEEEEEEE
Confidence 4666669999999999976 8999999998 4211 10 1112457999999999998 99999999999998
Q ss_pred cC
Q psy4846 249 RP 250 (279)
Q Consensus 249 ~~ 250 (279)
..
T Consensus 102 ~~ 103 (115)
T 2khi_A 102 QC 103 (115)
T ss_dssp CC
T ss_pred ec
Confidence 63
No 11
>2eqs_A ATP-dependent RNA helicase DHX8; S1 domain, OB-fold, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.75 E-value=7.3e-09 Score=79.69 Aligned_cols=70 Identities=13% Similarity=0.002 Sum_probs=54.3
Q ss_pred CCcceEEEEEeCeEEEEecCc--ceeEEEEcccCCCCCceeeecCCceEeecCeEecCCCeEEEEEEeccccCCCCeEEE
Q psy4846 168 DEDGYVLYVRKNALQILIPKY--GLEGTLFLRCDSPSVSWTYNEKEQSQSCGSVVFHSFDPVTVQLSLDRSNVQHEKLVL 245 (279)
Q Consensus 168 ~~~g~V~~V~~~Gi~V~Lp~~--giEG~V~l~~~~~~d~~~~~~~~~~l~~~~~~~~lGD~V~VkV~~~~vd~~~~~I~~ 245 (279)
.+.|.|++|.++|+||.|.++ +++|+||+++ ++.+++. ......|++||.|+|+|. ++|. ++|.|
T Consensus 15 i~~G~V~~v~~fG~FV~l~~~~~~~~Glvhise-l~~~~~~--------~~~~~~~~~Gd~V~VkV~--~vd~--~~i~L 81 (103)
T 2eqs_A 15 IYNGKVTSIMQFGCFVQLEGLRKRWEGLVHISE-LRREGRV--------ANVADVVSKGQRVKVKVL--SFTG--TKTSL 81 (103)
T ss_dssp EEEEEEEEECSSCEEEEECSSSSCCEEEECGGG-TSSSSCC--------CCHHHHCCTTCEEEEEEE--EEET--TEEEE
T ss_pred EEEEEEEEEeccEEEEEEcCCCCCeEEEEEHHH-CCCCccc--------CCcccEeCCCCEEEEEEE--EEEC--CeeEE
Confidence 346667799999999999985 8999999998 5333221 111457999999999998 8886 59999
Q ss_pred EEecC
Q psy4846 246 RLVRP 250 (279)
Q Consensus 246 ~lv~~ 250 (279)
++++.
T Consensus 82 Slk~~ 86 (103)
T 2eqs_A 82 SMKDV 86 (103)
T ss_dssp ESTTB
T ss_pred EEeec
Confidence 99863
No 12
>2c35_B Human RPB7, DNA-directed RNA polymerase II 19 kDa polypeptide; transcription, nucleotidyltransferase; 2.70A {Homo sapiens} SCOP: b.40.4.5 d.230.1.1
Probab=98.68 E-value=6.9e-08 Score=80.77 Aligned_cols=70 Identities=14% Similarity=0.141 Sum_probs=58.0
Q ss_pred ccCCcceEEEEEeCeEEEEecCcceeEEEEcccCCCCCceeeecCC--ceEeec--CeEecCCCeEEEEEEeccccCCCC
Q psy4846 166 VQDEDGYVLYVRKNALQILIPKYGLEGTLFLRCDSPSVSWTYNEKE--QSQSCG--SVVFHSFDPVTVQLSLDRSNVQHE 241 (279)
Q Consensus 166 ~~~~~g~V~~V~~~Gi~V~Lp~~giEG~V~l~~~~~~d~~~~~~~~--~~l~~~--~~~~~lGD~V~VkV~~~~vd~~~~ 241 (279)
...++|.|++|+++|+||.|. ..+|+||++. ++ ++|.||+.+ ..+.++ +..+++||.|+|+|. ++|..++
T Consensus 82 Gev~~G~V~~v~~fG~fV~l~--~~~glvhis~-l~-~~~~~d~~~~~~~~~~~~~~~~~~~Gd~V~vkV~--~vd~~~~ 155 (172)
T 2c35_B 82 GEVVDAVVTQVNKVGLFTEIG--PMSCFISRHS-IP-SEMEFDPNSNPPCYKTMDEDIVIQQDDEIRLKIV--GTRVDKN 155 (172)
T ss_dssp TCEEEEEEEEEETTEEEEEET--TEEEEEEGGG-SC-TTEEEESSSSSCEEEETTSCSEEETTCEEEEEEE--EEEEETT
T ss_pred CCEEEEEEEEEeCCEEEEEEC--CEEEEEEHHH-CC-CCcEECCCCCccEEEeCCCCEEECCCCEEEEEEE--EEEcCCC
Confidence 345688888999999999995 5789999998 74 678999977 677764 568999999999998 8887655
No 13
>1kl9_A Eukaryotic translation initiation factor 2 subuni; OB fold, helical domain; 1.90A {Homo sapiens} SCOP: a.60.14.1 b.40.4.5
Probab=98.68 E-value=9.8e-09 Score=86.92 Aligned_cols=70 Identities=11% Similarity=-0.007 Sum_probs=50.6
Q ss_pred CcceEEEEEeCeEEEEecC-cceeEEEEcccCCCCCceeeecCCceEeecCeEecCCCeEEEEEEeccccCCCCeEEEEE
Q psy4846 169 EDGYVLYVRKNALQILIPK-YGLEGTLFLRCDSPSVSWTYNEKEQSQSCGSVVFHSFDPVTVQLSLDRSNVQHEKLVLRL 247 (279)
Q Consensus 169 ~~g~V~~V~~~Gi~V~Lp~-~giEG~V~l~~~~~~d~~~~~~~~~~l~~~~~~~~lGD~V~VkV~~~~vd~~~~~I~~~l 247 (279)
+.|.|++|+++|+||.|++ .|++|+||+++ +..+++ ...+..+++||.|+|+|. ++|.++++|.|++
T Consensus 19 v~G~V~~I~~fGaFV~L~e~~g~eGLvhiSe-ls~~~v---------~~~~~~~~vGd~V~VkVl--~vD~~~~rI~LSl 86 (182)
T 1kl9_A 19 VMVNVRSIAEMGAYVSLLEYNNIEGMILLSE-LSRRRI---------RSINKLIRIGRNECVVVI--RVDKEKGYIDLSK 86 (182)
T ss_dssp EEEEEEEECSSEEEEEETTTTTEEEEEEGGG-C---------------------CTTCEEEEEEE--EEETTTTEEEEES
T ss_pred EEEEEEEEeccEEEEEEccCCCcEEEEEHHH-CCCccc---------CCHHHhcCCCCEEEEEEE--EEECCCCEEEEEE
Confidence 3555559999999999953 37999999998 432221 112568999999999998 9999999999999
Q ss_pred ecC
Q psy4846 248 VRP 250 (279)
Q Consensus 248 v~~ 250 (279)
++.
T Consensus 87 k~~ 89 (182)
T 1kl9_A 87 RRV 89 (182)
T ss_dssp TTC
T ss_pred eec
Confidence 863
No 14
>2k4k_A GSP13, general stress protein 13; cytoplasm, stress response, RNA binding protein; NMR {Bacillus subtilis}
Probab=98.67 E-value=2.2e-08 Score=80.20 Aligned_cols=69 Identities=12% Similarity=0.033 Sum_probs=55.8
Q ss_pred CCcceEEEEEeCeEEEEecCcceeEEEEcccCCCCCceeeecCCceEeecCeEecCCCeEEEEEEeccccCCCCeEEEEE
Q psy4846 168 DEDGYVLYVRKNALQILIPKYGLEGTLFLRCDSPSVSWTYNEKEQSQSCGSVVFHSFDPVTVQLSLDRSNVQHEKLVLRL 247 (279)
Q Consensus 168 ~~~g~V~~V~~~Gi~V~Lp~~giEG~V~l~~~~~~d~~~~~~~~~~l~~~~~~~~lGD~V~VkV~~~~vd~~~~~I~~~l 247 (279)
.+.|.|++|+++|+||.|++ +++|+||+++ +..+++ .+ ....|++||.|+|+|. ++|.++++|.|++
T Consensus 10 iv~G~V~~i~~~G~FV~l~~-~~~Glihise-l~~~~~-~~--------~~~~~~vGd~V~vkV~--~vd~~~~kI~LSl 76 (130)
T 2k4k_A 10 VYTGKVTGLQAYGAFVALDE-ETQGLVHISE-VTHGFV-KD--------INEHLSVGDEVQVKVL--AVDEEKGKISLSI 76 (130)
T ss_dssp EEEEEEEEEETTEEEEEEET-TEEEEEEGGG-TSSSCC-SC--------GGGTCCTTCEEEEEEE--EEETTTTEEEEES
T ss_pred EEEEEEEEEeCCeEEEEECC-CcEEEEEHHH-CCcccc-cC--------ccccCCCCCEEEEEEE--EEeCCCCEEEEEE
Confidence 34677779999999999987 8999999998 543321 11 1457999999999998 9999899999999
Q ss_pred ec
Q psy4846 248 VR 249 (279)
Q Consensus 248 v~ 249 (279)
..
T Consensus 77 k~ 78 (130)
T 2k4k_A 77 RA 78 (130)
T ss_dssp HH
T ss_pred ee
Confidence 74
No 15
>2cqo_A Nucleolar protein of 40 kDa; S1 domain, OB-fold, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.67 E-value=1.2e-08 Score=80.55 Aligned_cols=72 Identities=21% Similarity=0.102 Sum_probs=55.9
Q ss_pred cCCcceEEEEEeCeEEEEecCcceeEEEEcccCCCCCceeeecCCceEeecCeEecCCCeEEEEEEeccccCCC--CeEE
Q psy4846 167 QDEDGYVLYVRKNALQILIPKYGLEGTLFLRCDSPSVSWTYNEKEQSQSCGSVVFHSFDPVTVQLSLDRSNVQH--EKLV 244 (279)
Q Consensus 167 ~~~~g~V~~V~~~Gi~V~Lp~~giEG~V~l~~~~~~d~~~~~~~~~~l~~~~~~~~lGD~V~VkV~~~~vd~~~--~~I~ 244 (279)
..+.|+|++|+++|+||.|+.++++|+||+++ +..+++ ......|++||.|+|+|. ++|..+ ++|.
T Consensus 24 ~iv~G~V~~I~~fGaFV~l~g~~~~Glvhise-l~~~~~---------~~~~~~~~~Gd~V~VkV~--~vd~~~~~~~i~ 91 (119)
T 2cqo_A 24 TIFQGEVAMVTDYGAFIKIPGCRKQGLVHRTH-MSSCRV---------DKPSEIVDVGDKVWVKLI--GREMKNDRIKVS 91 (119)
T ss_dssp CEEEEEEEEEETTEEEEECTTCSSCEEEEHHH-HCSSCC---------SCHHHHCCTTCEEEEEEE--EEEECSSCEEEE
T ss_pred CEEEEEEEEEeCceEEEEECCCcEEEEEEHHH-CCcccc---------cChhhcCCCCCEEEEEEE--EEeccccCceEE
Confidence 34577788999999999998767899999998 432221 011456999999999998 888764 7999
Q ss_pred EEEecC
Q psy4846 245 LRLVRP 250 (279)
Q Consensus 245 ~~lv~~ 250 (279)
|++++.
T Consensus 92 LSlk~~ 97 (119)
T 2cqo_A 92 LSMKVV 97 (119)
T ss_dssp EESTTB
T ss_pred EEEeec
Confidence 999864
No 16
>2a19_A EIF-2- alpha, eukaryotic translation initiation factor 2 alpha; transferase, protein biosynthesis, protein synthesis transferase complex; HET: TPO ANP; 2.50A {Saccharomyces cerevisiae} PDB: 2a1a_A* 1q46_A
Probab=98.65 E-value=1e-08 Score=86.32 Aligned_cols=70 Identities=10% Similarity=-0.025 Sum_probs=52.9
Q ss_pred CcceEEEEEeCeEEEEecC-cceeEEEEcccCCCCCceeeecCCceEeecCeEecCCCeEEEEEEeccccCCCCeEEEEE
Q psy4846 169 EDGYVLYVRKNALQILIPK-YGLEGTLFLRCDSPSVSWTYNEKEQSQSCGSVVFHSFDPVTVQLSLDRSNVQHEKLVLRL 247 (279)
Q Consensus 169 ~~g~V~~V~~~Gi~V~Lp~-~giEG~V~l~~~~~~d~~~~~~~~~~l~~~~~~~~lGD~V~VkV~~~~vd~~~~~I~~~l 247 (279)
+.|.|++|+++|+||.|++ .|++|+||+++ +..+++ ...+..+++||.|+|+|. ++|..+++|.|++
T Consensus 19 v~G~V~~i~~fGaFV~L~e~~gveGLvhiSe-ls~~~v---------~~~~~~~~vGd~V~vkVl--~vd~~~~~I~LSl 86 (175)
T 2a19_A 19 VMVNVQQIAEMGAYVKLLEYDNIEGMILLSE-LSRRRI---------RSIQKLIRVGKNDVAVVL--RVDKEKGYIDLSK 86 (175)
T ss_dssp EEEEEEEEETTEEEEEETTTTTCEEEEECC------------------CCCCCCCTTSEEEEEEE--EEETTTTEEEEES
T ss_pred EEEEEEEEecceEEEEEcCCCCcEEEEEHHH-cCCccc---------CCHHHcCCCCCEEEEEEE--EEECCCCeEEEEE
Confidence 4566669999999999963 48999999998 432221 112567999999999998 9999999999999
Q ss_pred ecC
Q psy4846 248 VRP 250 (279)
Q Consensus 248 v~~ 250 (279)
++.
T Consensus 87 k~~ 89 (175)
T 2a19_A 87 RRV 89 (175)
T ss_dssp TTC
T ss_pred Eec
Confidence 863
No 17
>2b8k_G B16, DNA-directed RNA polymerase II 19 kDa polypeptide; DNA-dependent RNA polymerase, cellular RNA polymerase; 4.15A {Saccharomyces cerevisiae} SCOP: b.40.4.5 d.230.1.1
Probab=98.63 E-value=7.2e-08 Score=83.66 Aligned_cols=68 Identities=15% Similarity=0.158 Sum_probs=57.4
Q ss_pred CCcceEEEEEeCeEEEEecCcceeEEEEcccCCCCCceeeecCCc--eEeecCeEecCCCeEEEEEEeccccCCCC
Q psy4846 168 DEDGYVLYVRKNALQILIPKYGLEGTLFLRCDSPSVSWTYNEKEQ--SQSCGSVVFHSFDPVTVQLSLDRSNVQHE 241 (279)
Q Consensus 168 ~~~g~V~~V~~~Gi~V~Lp~~giEG~V~l~~~~~~d~~~~~~~~~--~l~~~~~~~~lGD~V~VkV~~~~vd~~~~ 241 (279)
.++|+|++|+++|+||.|.. ++|+||++. ++ ++|.||+... .+.+....+++||.|+|+|. ++|..++
T Consensus 86 v~~G~V~~vt~fG~FVelg~--~dGlVhiS~-l~-d~~~~d~~~~~w~~~~~~~~~~~Gd~VrVkV~--~vd~~~~ 155 (215)
T 2b8k_G 86 VVDGTVVSCSQHGFEVQVGP--MKVFVTKHL-MP-QDLTFNAGSNPPSYQSSEDVITIKSRIRVKIE--GCISQVS 155 (215)
T ss_dssp EEEEEEEEEETTEEEEECTT--SEEEEEGGG-SC-SSCCCBSSCSSCEEECSSCEEETTCEEEEEEE--EEEEETT
T ss_pred EEEEEEEEEecceEEEEecC--cEEEEEHHH-CC-ccceeccccccceeeccccEECCCCEEEEEEE--EEEcCCC
Confidence 45778889999999999964 899999998 64 6789998776 56665567999999999998 8888775
No 18
>1y14_B B16, RPB7, DNA-directed RNA polymerase II 19 kDa polypeptide; transferase; 2.30A {Saccharomyces cerevisiae} SCOP: b.40.4.5 d.230.1.1 PDB: 1nt9_G 1wcm_G 1pqv_G 1y1v_G 1y1w_G 1y1y_G 1y77_G* 2b63_G* 2ja5_G* 2ja6_G* 2ja7_G* 2ja8_G* 2r7z_G 2r92_G 2r93_G 2vum_G* 3fki_G 3h3v_H 3hou_G* 3hov_G* ...
Probab=98.60 E-value=1.1e-07 Score=79.48 Aligned_cols=71 Identities=14% Similarity=0.173 Sum_probs=55.6
Q ss_pred cCCcceEEEEEeCeEEEEecCcceeEEEEcccCCCCCceeeecCCc--eEeecCeEecCCCeEEEEEEeccccCCCCeE
Q psy4846 167 QDEDGYVLYVRKNALQILIPKYGLEGTLFLRCDSPSVSWTYNEKEQ--SQSCGSVVFHSFDPVTVQLSLDRSNVQHEKL 243 (279)
Q Consensus 167 ~~~~g~V~~V~~~Gi~V~Lp~~giEG~V~l~~~~~~d~~~~~~~~~--~l~~~~~~~~lGD~V~VkV~~~~vd~~~~~I 243 (279)
..++|.|++++++|+||.|.. .+|+||++. ++ ++|.||+... .+.+....+++||.|+|+|. ++|.+++.+
T Consensus 85 ev~~G~V~~v~~fG~FV~l~~--~dglvhis~-l~-~~~~~d~~~~~~~~~~~~~~~~~Gd~V~vkV~--~vd~~~~~~ 157 (171)
T 1y14_B 85 EVVDGTVVSCSQHGFEVQVGP--MKVFVTKHL-MP-QDLTFNAGSNPPSYQSSEDVITIKSRIRVKIE--GCISQVSSI 157 (171)
T ss_dssp CEEEEEEEEEETTEEEEEETT--EEEEEEGGG-SC-TTCEECC-----CEECSSCEECTTCEEEEEEE--EEEEETTEE
T ss_pred CEEEEEEEEEecCEEEEEecC--eEEEEEHHH-CC-CCceECcccCceEEeccceEECCCCEEEEEEE--EEEcCCCCc
Confidence 345778889999999999974 899999998 64 6789998766 45555567999999999998 888876543
No 19
>3ayh_B DNA-directed RNA polymerase III subunit RPC8; transcription; 2.19A {Schizosaccharomyces pombe}
Probab=98.56 E-value=8.4e-08 Score=82.51 Aligned_cols=68 Identities=7% Similarity=0.092 Sum_probs=58.0
Q ss_pred cCCcceEEEEEeCeEEEEecCcceeEEEEcccCCCCCceeeecCCceEee--------c--CeEecCCCeEEEEEEeccc
Q psy4846 167 QDEDGYVLYVRKNALQILIPKYGLEGTLFLRCDSPSVSWTYNEKEQSQSC--------G--SVVFHSFDPVTVQLSLDRS 236 (279)
Q Consensus 167 ~~~~g~V~~V~~~Gi~V~Lp~~giEG~V~l~~~~~~d~~~~~~~~~~l~~--------~--~~~~~lGD~V~VkV~~~~v 236 (279)
..++|.|.+|+++|+||.|. .++|++|.++ +.++++.||+..+.+++ + +..|++||.|+|+|. ++
T Consensus 83 Ev~~G~Vs~vt~~GifV~lg--~~eglv~~~~-l~~d~~~fd~~~~~~v~~~~~~~~~~~~~~~~~~Gd~VrvrV~--~v 157 (203)
T 3ayh_B 83 EVMLGKIKSCSEEGIRVTIS--FFDDIFIPKD-MLFDPCVFRPDERAWVWKIEGEDGSEGTELYFDIDEEIRFQIE--SE 157 (203)
T ss_dssp CEEEEEEEEEETTEEEEECS--SCCCEEEEGG-GBCTTEEEEGGGTEEEEEECCCTTSCCEEEECCTTCEEEEEEE--EE
T ss_pred CEEEEEEEEEeccEEEEEEe--CceEEEEcHH-hCCCCceECccCceEEeecccccccccCCcEEcCCCEEEEEEE--EE
Confidence 34678888999999999994 6899999998 66689999999999888 4 567999999999998 66
Q ss_pred cCC
Q psy4846 237 NVQ 239 (279)
Q Consensus 237 d~~ 239 (279)
+..
T Consensus 158 ~~~ 160 (203)
T 3ayh_B 158 DFV 160 (203)
T ss_dssp EEC
T ss_pred Ecc
Confidence 653
No 20
>2khj_A 30S ribosomal protein S1; OB fold, acetylation, phosphoprotein, ribonucleoprotein, RNA-binding; NMR {Escherichia coli}
Probab=98.47 E-value=7e-08 Score=74.78 Aligned_cols=67 Identities=16% Similarity=0.190 Sum_probs=53.2
Q ss_pred cceEEEEEeCeEEEEecCcceeEEEEcccCCCCCceeeecCCceEeecCeEecCCCeEEEEEEeccccCCCCeEEEEEec
Q psy4846 170 DGYVLYVRKNALQILIPKYGLEGTLFLRCDSPSVSWTYNEKEQSQSCGSVVFHSFDPVTVQLSLDRSNVQHEKLVLRLVR 249 (279)
Q Consensus 170 ~g~V~~V~~~Gi~V~Lp~~giEG~V~l~~~~~~d~~~~~~~~~~l~~~~~~~~lGD~V~VkV~~~~vd~~~~~I~~~lv~ 249 (279)
.|.|++|.++|+||.|++ +++|+||+++ +..++. ......|++||.|+|+|. ++|..+++|.|++..
T Consensus 36 ~G~V~~v~~~G~fV~l~~-~~~Gll~~se-l~~~~~---------~~~~~~~~vGd~V~v~V~--~vd~~~~ki~LS~k~ 102 (109)
T 2khj_A 36 TGKVTAVDAKGATVELAD-GVEGYLRASE-ASRDRV---------EDATLVLSVGDEVEAKFT--GVDRKNRAISLSVRA 102 (109)
T ss_dssp EEEEEEECSSCEEEECST-TCBCCBCTTC-CCSSSS---------SSGGGSCCTTCEEEEEEE--EEETTTTEEEEETTS
T ss_pred EEEEEEEECCeEEEEECC-CCEEEEEHHH-cCcccc---------cChhhccCCCCEEEEEEE--EEECCCCEEEEEEee
Confidence 444559999999999987 8999999997 432221 011457999999999998 999988999999875
No 21
>3h0g_G DNA-directed RNA polymerase II subunit RPB7; transcription, multi-protein complex, DNA- binding, magnesium; 3.65A {Schizosaccharomyces pombe}
Probab=98.41 E-value=2e-07 Score=78.10 Aligned_cols=72 Identities=13% Similarity=0.043 Sum_probs=58.3
Q ss_pred ccCCcceEEEEEeCeEEEEecCcceeEEEEcccCCCCCceeeecC--CceEeecCeEecCCCeEEEEEEeccccCCCCeE
Q psy4846 166 VQDEDGYVLYVRKNALQILIPKYGLEGTLFLRCDSPSVSWTYNEK--EQSQSCGSVVFHSFDPVTVQLSLDRSNVQHEKL 243 (279)
Q Consensus 166 ~~~~~g~V~~V~~~Gi~V~Lp~~giEG~V~l~~~~~~d~~~~~~~--~~~l~~~~~~~~lGD~V~VkV~~~~vd~~~~~I 243 (279)
...++|.|++++++|+||.|. +++|+||.++ + .++|.||+. ...+...+..+++||.|+|+|. ++|...+++
T Consensus 85 Gev~~G~V~~v~~fG~FV~l~--~~~glVh~s~-l-~~~~~~d~~~~~~~~~~~~~~~~~Gd~VrvkV~--~vd~~~~~~ 158 (172)
T 3h0g_G 85 GEVVDAIVTTVNKMGFFANIG--PLNVFVSSHL-V-PPDMKFDPTANPPNYSGEDQVIEKGSNVRLKIV--GTRTDATEI 158 (172)
T ss_dssp TCEEECCCCEEETTEEECCBT--TBCCEEEGGG-S-CTTCCCBSSSSSCBEESSSCEECSSCCEEEEEE--EEEESSSCE
T ss_pred CCEEEEEEEEEEcceEEEEeC--CeEEEEEHHH-C-CCccccCcccccceEecCCcEECCCCEEEEEEE--EEECCCCCc
Confidence 345799999999999999995 5789999998 7 467889883 4455334678999999999998 888877554
No 22
>3aev_A Translation initiation factor 2 subunit alpha; proteins-rRNA complex, 16S rRNA, RNA-binding; 2.80A {Pyrococcus horikoshii} PDB: 1yz6_A
Probab=98.40 E-value=3e-07 Score=82.52 Aligned_cols=70 Identities=14% Similarity=0.075 Sum_probs=56.0
Q ss_pred CcceEEEEEeCeEEEEecCc-ceeEEEEcccCCCCCceeeecCCceEeecCeEecCCCeEEEEEEeccccCCCCeEEEEE
Q psy4846 169 EDGYVLYVRKNALQILIPKY-GLEGTLFLRCDSPSVSWTYNEKEQSQSCGSVVFHSFDPVTVQLSLDRSNVQHEKLVLRL 247 (279)
Q Consensus 169 ~~g~V~~V~~~Gi~V~Lp~~-giEG~V~l~~~~~~d~~~~~~~~~~l~~~~~~~~lGD~V~VkV~~~~vd~~~~~I~~~l 247 (279)
+.|.|++|.++|+||.|.+| |++|+||+++ +..+++. ..+..+++||.|+|+|. ++|..+++|.|++
T Consensus 15 v~G~V~~I~~fGaFV~L~e~~gieGlIhiSe-ls~~~v~---------~~~~~~kvGd~V~vkVi--~vD~~~~~I~LSl 82 (275)
T 3aev_A 15 VVATVKRIHNYGAFLELDEYPGKEAFMHISE-VASTWVR---------NIRDYLKEGQKVVAKVI--RVDPRKGHIDLSL 82 (275)
T ss_dssp EEEEEEEEETTEEEEEETTSTTCEEEEEGGG-SCSSCCS---------CGGGTCCTTCEEEEEEE--EEETTTTEEEEES
T ss_pred EEEEEEEEECcEEEEEECCCCCeEEEEEHHH-cCccccc---------CHHhccCCCCEEEEEEE--EEECCCCEEEEEE
Confidence 35555699999999999874 8999999998 5323211 11457999999999998 9999999999999
Q ss_pred ecC
Q psy4846 248 VRP 250 (279)
Q Consensus 248 v~~ 250 (279)
.+.
T Consensus 83 k~~ 85 (275)
T 3aev_A 83 RRV 85 (275)
T ss_dssp TTC
T ss_pred eec
Confidence 863
No 23
>1wi5_A RRP5 protein homolog; S1 domain, OB-fold, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: b.40.4.5
Probab=98.37 E-value=2.5e-07 Score=72.80 Aligned_cols=73 Identities=10% Similarity=-0.051 Sum_probs=55.2
Q ss_pred CCcceEEEEEeCeEEEEecCcceeEEEEcccCCCCCceeeecCCceEeecCeEecCCCeEEEEEEeccccCCCCeEEEEE
Q psy4846 168 DEDGYVLYVRKNALQILIPKYGLEGTLFLRCDSPSVSWTYNEKEQSQSCGSVVFHSFDPVTVQLSLDRSNVQHEKLVLRL 247 (279)
Q Consensus 168 ~~~g~V~~V~~~Gi~V~Lp~~giEG~V~l~~~~~~d~~~~~~~~~~l~~~~~~~~lGD~V~VkV~~~~vd~~~~~I~~~l 247 (279)
.+.|.|.+|.++|+||.|...+++|+++.+. . .+|+.++. .+..|++||.|+|+|. ++|..+++|.|++
T Consensus 24 i~~G~V~~v~~fG~fV~l~~~~~~~l~~~~~-~-~~~~~~~~-------~~~~~~~Gd~V~vkV~--~vd~~~~~i~Lsl 92 (119)
T 1wi5_A 24 LLTGTVSSLEDHGYLVDIGVDGTRAFLPLLK-A-QEYIRQKN-------KGAKLKVGQYLNCIVE--KVKGNGGVVSLSV 92 (119)
T ss_dssp EEEEEEEEECSSEEEEECCCSSCEEEEEHHH-H-HHHHHHHS-------SSCCCCTTCEEEEEEE--ECCTTSCEEEEEC
T ss_pred EEEEEEEEEeCceEEEEECCCCeEEEEEEec-c-cccccccC-------ccCEeCCCCEEEEEEE--EEeCCCCEEEEEE
Confidence 3567777999999999998446777776654 1 13333322 1457999999999998 9999999999999
Q ss_pred ecCC
Q psy4846 248 VRPV 251 (279)
Q Consensus 248 v~~~ 251 (279)
+++.
T Consensus 93 k~~~ 96 (119)
T 1wi5_A 93 GHSE 96 (119)
T ss_dssp CCCC
T ss_pred chhh
Confidence 8753
No 24
>1q8k_A Eukaryotic translation initiation factor 2 subunit 1; NMR {Homo sapiens} SCOP: a.60.14.1 b.40.4.5 d.58.51.1
Probab=98.32 E-value=4.8e-07 Score=82.42 Aligned_cols=70 Identities=13% Similarity=0.050 Sum_probs=55.8
Q ss_pred CcceEEEEEeCeEEEEecCc-ceeEEEEcccCCCCCceeeecCCceEeecCeEecCCCeEEEEEEeccccCCCCeEEEEE
Q psy4846 169 EDGYVLYVRKNALQILIPKY-GLEGTLFLRCDSPSVSWTYNEKEQSQSCGSVVFHSFDPVTVQLSLDRSNVQHEKLVLRL 247 (279)
Q Consensus 169 ~~g~V~~V~~~Gi~V~Lp~~-giEG~V~l~~~~~~d~~~~~~~~~~l~~~~~~~~lGD~V~VkV~~~~vd~~~~~I~~~l 247 (279)
+.|.|++|+++|+||.|.+| |++|+||+++ +..++ .......|++||.|+|+|. ++|+.+++|.|++
T Consensus 17 v~G~V~~I~~fGaFV~L~ey~gveGLvhiSe-ls~~~---------i~~~~~~~kvGd~V~VkVl--~vD~~~~rI~LSl 84 (308)
T 1q8k_A 17 VMVNVRSIQEMGAYVSLLEYNNIEGMIHLSE-LSRRR---------IRSINKLIRIGRNECVKVI--RVDKEKGYIDLSK 84 (308)
T ss_dssp EEEEEEEEETTEEEEESCTTTSCCEEECGGG-TSCSS---------CSCCTTTCSSSCEEEEEEE--EEETTTTEEEEEC
T ss_pred EEEEEEEEeCcEEEEEECCCCCeEEEEEhHH-cCccc---------ccCHHHhcCCCCEEEEEEE--EEeCCCCEEEEEE
Confidence 35666699999999999863 8999999998 43221 1112457999999999998 9999999999999
Q ss_pred ecC
Q psy4846 248 VRP 250 (279)
Q Consensus 248 v~~ 250 (279)
+..
T Consensus 85 K~~ 87 (308)
T 1q8k_A 85 RRV 87 (308)
T ss_dssp SSC
T ss_pred Eec
Confidence 863
No 25
>3bzc_A TEX; helix-turn-helix, helix-hairpin-helix, S1 domain, YQGF domain, transcription, RNA binding protein; 2.27A {Pseudomonas aeruginosa} SCOP: a.60.2.6 a.60.2.6 a.294.1.1 b.40.4.5 c.55.3.13 PDB: 3bzk_A 2oce_A
Probab=98.21 E-value=5e-07 Score=91.55 Aligned_cols=73 Identities=14% Similarity=0.120 Sum_probs=59.8
Q ss_pred CCcceEEEEEeCeEEEEecCcceeEEEEcccCCCCCceeeecCCceEeecCeEecCCCeEEEEEEeccccCCCCeEEEEE
Q psy4846 168 DEDGYVLYVRKNALQILIPKYGLEGTLFLRCDSPSVSWTYNEKEQSQSCGSVVFHSFDPVTVQLSLDRSNVQHEKLVLRL 247 (279)
Q Consensus 168 ~~~g~V~~V~~~Gi~V~Lp~~giEG~V~l~~~~~~d~~~~~~~~~~l~~~~~~~~lGD~V~VkV~~~~vd~~~~~I~~~l 247 (279)
.+.|+|++|+++|+||.|.. +++|+||+++ +.+ .|.+++ +..|++||.|+|+|. ++|..+++|.|++
T Consensus 657 iv~G~V~~V~~fGaFV~l~~-~~eGLVhiS~-Lsd-~~v~d~--------~~~~~vGd~V~VkVi--~VD~~~~rI~LSl 723 (785)
T 3bzc_A 657 VLEGVVTNVTNFGAFVDIGV-HQDGLVHISA-LSE-KFVKDP--------YEVVKAGDIVKVKVM--EVDIPRNRVGLSM 723 (785)
T ss_dssp BCCCEEEEEETTEEEEECSS-SSEEEEETTT-SCS-SCCSCH--------HHHCCTTCCCCCBEE--EEETTTTEEEECC
T ss_pred EEEEEEEEEecCCeEEEeCC-CcEEEEEHHH-cCc-cccCCh--------hheeCCCCEEEEEEE--EEECCCCEEEEEE
Confidence 45777779999999999965 8999999998 543 444443 457999999999998 9999999999999
Q ss_pred ecCCcc
Q psy4846 248 VRPVIE 253 (279)
Q Consensus 248 v~~~~~ 253 (279)
+....+
T Consensus 724 k~~~~~ 729 (785)
T 3bzc_A 724 RMSDTP 729 (785)
T ss_dssp SSCCCC
T ss_pred ecCCCC
Confidence 865443
No 26
>3go5_A Multidomain protein with S1 RNA-binding domains; structural genomics, joint center for structural genomics, JCSG; HET: MSE; 1.40A {Streptococcus pneumoniae}
Probab=98.20 E-value=1.7e-06 Score=78.00 Aligned_cols=80 Identities=11% Similarity=-0.009 Sum_probs=61.4
Q ss_pred cCCcceEEEEEeCeEEE-EecCcceeEEEEcccCCCCCceeeecCCceEeecCeEecCCCeEEEEEEeccccCCCCeEEE
Q psy4846 167 QDEDGYVLYVRKNALQI-LIPKYGLEGTLFLRCDSPSVSWTYNEKEQSQSCGSVVFHSFDPVTVQLSLDRSNVQHEKLVL 245 (279)
Q Consensus 167 ~~~~g~V~~V~~~Gi~V-~Lp~~giEG~V~l~~~~~~d~~~~~~~~~~l~~~~~~~~lGD~V~VkV~~~~vd~~~~~I~~ 245 (279)
+.++|+|.+++++|+|| .+.+ +++|+||.++ + ...+++||.|+|+|. ++|.++++|.|
T Consensus 154 ~~V~g~V~~i~~~G~fV~~i~~-g~~Glih~SE-l-----------------~~~l~~Gd~v~~~V~--~id~~d~kI~L 212 (285)
T 3go5_A 154 QNWPAIVYRLKLSGTFVYLPEN-NMLGFIHPSE-R-----------------YAEPRLGQVLDARVI--GFREVDRTLNL 212 (285)
T ss_dssp CEEEEEEEEEETTEEEEEETTT-TEEEEECGGG-C-----------------SSCCCTTCEEEEEEE--EEETTTTEEEE
T ss_pred CEEEEEEEEEeCCcEEEEEeCC-CeEEEEEHHH-c-----------------cccCCCCCEEEEEEE--EEECCCCeEEE
Confidence 44577788999999999 8866 8999999998 3 125899999999998 99999999999
Q ss_pred EEecCCccCcccCccccccchhhh
Q psy4846 246 RLVRPVIEGFSVSSAGEQGEEKME 269 (279)
Q Consensus 246 ~lv~~~~~~~~~~~~~~~~~~~~~ 269 (279)
++......... ..++..-..|+
T Consensus 213 Slk~~~~~~~~--~~a~~il~~L~ 234 (285)
T 3go5_A 213 SLKPRSFEMLE--NDAQMILTYLE 234 (285)
T ss_dssp ECSCCCCCCCC--HHHHHHHHHHH
T ss_pred EeChhhhhccc--hHHHHHHHHHH
Confidence 99986553222 23444444444
No 27
>3psi_A Transcription elongation factor SPT6; nucleus; 3.30A {Saccharomyces cerevisiae}
Probab=98.11 E-value=1.4e-06 Score=91.76 Aligned_cols=73 Identities=5% Similarity=-0.085 Sum_probs=61.1
Q ss_pred cCCcceEEEEEeCeEEEEecCcceeEEEEcccCCCCCceeeecCCceEeecCeEecCCCeEEEEEEeccccCCCCeEEEE
Q psy4846 167 QDEDGYVLYVRKNALQILIPKYGLEGTLFLRCDSPSVSWTYNEKEQSQSCGSVVFHSFDPVTVQLSLDRSNVQHEKLVLR 246 (279)
Q Consensus 167 ~~~~g~V~~V~~~Gi~V~Lp~~giEG~V~l~~~~~~d~~~~~~~~~~l~~~~~~~~lGD~V~VkV~~~~vd~~~~~I~~~ 246 (279)
..+.|+|++|+++|+||.|.. |++|+||+++ +.++++..++ ...+++||.|+|+|. ++|..+++|.|+
T Consensus 904 ~iv~G~V~~V~~fGaFV~L~~-gveGLVHiSe-lsd~~~v~~p--------~~v~kvGd~V~vkVl--~VD~~~~rI~LS 971 (1219)
T 3psi_A 904 SIIPVRVERFWHNDIICTTNS-EVECVVNAQR-HAGAQLRRPA--------NEIYEIGKTYPAKVI--YIDYANITAEVS 971 (1219)
T ss_dssp CEEEEEEEEECSSCEEEECTT-SCEEEECTTS-SSSTTSCSCS--------TTTSCTTCEEEEEEE--EEEGGGTEEEEE
T ss_pred CEEEEEEEEEecceEEEEeCC-CceEEEEHHH-cCCCcccCCH--------HHcCCCCCEEEEEEE--EEECCCCEEEEE
Confidence 456899999999999999964 9999999998 6545444444 347899999999998 999999999999
Q ss_pred EecCC
Q psy4846 247 LVRPV 251 (279)
Q Consensus 247 lv~~~ 251 (279)
+++..
T Consensus 972 lk~~d 976 (1219)
T 3psi_A 972 LLDHD 976 (1219)
T ss_dssp CCHHH
T ss_pred ecHHH
Confidence 98653
No 28
>3psf_A Transcription elongation factor SPT6; nucleus; 2.59A {Saccharomyces cerevisiae}
Probab=98.03 E-value=6.6e-07 Score=92.96 Aligned_cols=75 Identities=5% Similarity=-0.064 Sum_probs=0.0
Q ss_pred cCCcceEEEEEeCeEEEEecCcceeEEEEcccCCCCCceeeecCCceEeecCeEecCCCeEEEEEEeccccCCCCeEEEE
Q psy4846 167 QDEDGYVLYVRKNALQILIPKYGLEGTLFLRCDSPSVSWTYNEKEQSQSCGSVVFHSFDPVTVQLSLDRSNVQHEKLVLR 246 (279)
Q Consensus 167 ~~~~g~V~~V~~~Gi~V~Lp~~giEG~V~l~~~~~~d~~~~~~~~~~l~~~~~~~~lGD~V~VkV~~~~vd~~~~~I~~~ 246 (279)
..+.|+|++|+++|+||.|.. |++|+||+++ +.++++..++ ...|++||.|+|+|. ++|..+++|.|+
T Consensus 907 ~iv~G~V~~V~~fGaFV~L~~-gveGLVHiSe-lsd~~~v~~~--------~~v~kvGd~V~vkVl--~VD~~~~rI~LS 974 (1030)
T 3psf_A 907 SIIPVRVERFWHNDIICTTNS-EVECVVNAQR-HAGAQLRRPA--------NEIYEIGKTYPAKVI--YIDYANITAEVS 974 (1030)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred CEEEEEEEEEccCeEEEEeCC-CcEEEEEHHH-cCCCcccCCH--------HHcCCCCCEEEEEEE--EEECCCCEEEEE
Confidence 457999999999999999964 9999999998 5444434443 357999999999998 999999999999
Q ss_pred EecCCcc
Q psy4846 247 LVRPVIE 253 (279)
Q Consensus 247 lv~~~~~ 253 (279)
+++....
T Consensus 975 lk~~dl~ 981 (1030)
T 3psf_A 975 LLDHDVK 981 (1030)
T ss_dssp -------
T ss_pred echHHhc
Confidence 9876543
No 29
>3cw2_C Translation initiation factor 2 subunit alpha; AIF2, intact AIF2, initiation factor 2 alpha subunit, initiation factor 2 beta subunit; 2.80A {Sulfolobus solfataricus} PDB: 2aho_B 3v11_B*
Probab=98.00 E-value=1.1e-06 Score=78.55 Aligned_cols=71 Identities=15% Similarity=-0.023 Sum_probs=56.4
Q ss_pred CCcceEEEEEeCeEEEEecC-cceeEEEEcccCCCCCceeeecCCceEeecCeEecCCCeEEEEEEeccccCCCCeEEEE
Q psy4846 168 DEDGYVLYVRKNALQILIPK-YGLEGTLFLRCDSPSVSWTYNEKEQSQSCGSVVFHSFDPVTVQLSLDRSNVQHEKLVLR 246 (279)
Q Consensus 168 ~~~g~V~~V~~~Gi~V~Lp~-~giEG~V~l~~~~~~d~~~~~~~~~~l~~~~~~~~lGD~V~VkV~~~~vd~~~~~I~~~ 246 (279)
.+.|.|.+|.++|+||.|.+ .|++|+||+++ +..+++. ..+..+++||.|+|+|. ++|..+++|.|+
T Consensus 14 iv~G~V~~I~~~GaFV~l~e~~~~~GlihiSe-ls~~~v~---------~~~~~~~vGd~V~VkVi--~vd~~~g~I~LS 81 (266)
T 3cw2_C 14 ILIATVKQVFDYGSYVSLDEYGGLQAFLPWSE-VSSKWVK---------NIRDVLKENRKVIVKVI--RVDRRKGTVDVS 81 (266)
T ss_dssp EEEEEEEECCSSSBEEEETTTTSEECBBCGGG-SSCSSCC---------CHHHHSCTTCEEEEEEC--CCCSSSCCCBEE
T ss_pred EEEEEEEEEeccEEEEEEcCCCCeEEEEEhHH-cCccccc---------CHHHhCcCCCEEEEEEE--EEeCCCCEEEEE
Confidence 34667779999999999985 38999999998 5333211 11457999999999998 999999999999
Q ss_pred EecC
Q psy4846 247 LVRP 250 (279)
Q Consensus 247 lv~~ 250 (279)
+...
T Consensus 82 lk~~ 85 (266)
T 3cw2_C 82 LKKV 85 (266)
T ss_dssp STTS
T ss_pred EEec
Confidence 9864
No 30
>4aid_A Polyribonucleotide nucleotidyltransferase; transferase-peptide complex; 2.60A {Caulobacter vibrioides} PDB: 4aim_A 4am3_A
Probab=97.98 E-value=1.2e-06 Score=87.87 Aligned_cols=69 Identities=17% Similarity=0.010 Sum_probs=0.0
Q ss_pred CCcceEEEEEeCeEEEEecCcceeEEEEcccCCCCCceeeecCCceEeecCeEecCCCeEEEEEEeccccCCCCeEEEEE
Q psy4846 168 DEDGYVLYVRKNALQILIPKYGLEGTLFLRCDSPSVSWTYNEKEQSQSCGSVVFHSFDPVTVQLSLDRSNVQHEKLVLRL 247 (279)
Q Consensus 168 ~~~g~V~~V~~~Gi~V~Lp~~giEG~V~l~~~~~~d~~~~~~~~~~l~~~~~~~~lGD~V~VkV~~~~vd~~~~~I~~~l 247 (279)
.+.|+|++|.++|+||.|.. |++|+||+++ +..+++. ..+..|++||.|+|+|. ++|. +++|.|++
T Consensus 640 v~~G~V~~I~~fGaFVel~~-g~eGLvHiSe-ls~~rv~---------~~~d~~kvGD~V~VkVi--~iD~-~grI~LS~ 705 (726)
T 4aid_A 640 IYDGKVVKVVDFGAFVNFFG-AKDGLVHVSQ-ISNERVA---------KPSDVLKEGQMVKVKLL--GFDD-RGKTKLSM 705 (726)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred EEEEEEEEEeccEEEEEECC-CcEEEEEHHH-cCccccc---------CccccCCCCCEEEEEEE--EECC-CCcEEEEE
Confidence 35677779999999999976 8999999998 4323221 12467999999999998 9998 79999999
Q ss_pred ecC
Q psy4846 248 VRP 250 (279)
Q Consensus 248 v~~ 250 (279)
+..
T Consensus 706 K~~ 708 (726)
T 4aid_A 706 KVV 708 (726)
T ss_dssp ---
T ss_pred eec
Confidence 864
No 31
>3cdi_A Polynucleotide phosphorylase; mRNA turnover, RNAse, RNA degradation, kinase, transferase; 2.60A {Escherichia coli} PDB: 1sro_A
Probab=97.78 E-value=3.2e-06 Score=85.12 Aligned_cols=70 Identities=13% Similarity=0.072 Sum_probs=0.0
Q ss_pred cCCcceEEEEEeCeEEEEecCcceeEEEEcccCCCCCceeeecCCceEeecCeEecCCCeEEEEEEeccccCCCCeEEEE
Q psy4846 167 QDEDGYVLYVRKNALQILIPKYGLEGTLFLRCDSPSVSWTYNEKEQSQSCGSVVFHSFDPVTVQLSLDRSNVQHEKLVLR 246 (279)
Q Consensus 167 ~~~~g~V~~V~~~Gi~V~Lp~~giEG~V~l~~~~~~d~~~~~~~~~~l~~~~~~~~lGD~V~VkV~~~~vd~~~~~I~~~ 246 (279)
..+.|+|++|.++|+||.|.. |++|+||+++ +..+++ ...+..+++||.|+|+|. ++|. +++|.|+
T Consensus 629 ~i~~G~V~~i~~fGaFVel~~-g~eGLvHiSe-l~~~~v---------~~~~~~~~vGd~V~VkVi--~vd~-~grI~LS 694 (723)
T 3cdi_A 629 RVYTGKVTRIVDFGAFVAIGG-GKEGLVHISQ-IADKRV---------EKVTDYLQMGQEVPVKVL--EVDR-QGRIRLS 694 (723)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cEEEEEEEEEecceEEEEeCC-CceEEEEHHH-cCCccc---------cCcccccCCCCEEEEEEE--EECC-CCcEEEE
Confidence 346888999999999999976 8999999998 432221 112457999999999998 8988 8999999
Q ss_pred EecC
Q psy4846 247 LVRP 250 (279)
Q Consensus 247 lv~~ 250 (279)
++.-
T Consensus 695 ~k~~ 698 (723)
T 3cdi_A 695 IKEA 698 (723)
T ss_dssp ----
T ss_pred EEec
Confidence 9863
No 32
>1e3p_A Guanosine pentaphosphate synthetase; polyribonucleotide transferase, ATP-GTP diphosphotransferase RNA processing, RNA degradation; 2.5A {Streptomyces antibioticus} SCOP: a.4.9.1 b.40.4.5 d.14.1.4 d.14.1.4 d.52.3.1 d.101.1.1 d.101.1.1 PDB: 1e3h_A
Probab=97.69 E-value=3.2e-06 Score=85.48 Aligned_cols=69 Identities=17% Similarity=0.064 Sum_probs=36.7
Q ss_pred CCcceEEEEEeCeEEEEecCcceeEEEEcccCC----CCCceeeecCCceEeecCeEecCCCeEEEEEEeccccCCCCeE
Q psy4846 168 DEDGYVLYVRKNALQILIPKYGLEGTLFLRCDS----PSVSWTYNEKEQSQSCGSVVFHSFDPVTVQLSLDRSNVQHEKL 243 (279)
Q Consensus 168 ~~~g~V~~V~~~Gi~V~Lp~~giEG~V~l~~~~----~~d~~~~~~~~~~l~~~~~~~~lGD~V~VkV~~~~vd~~~~~I 243 (279)
.+.|+|++|.++|+||.|.. |++|+||+++ + ..+++ ...+..|++||.|+|+|. ++|. +++|
T Consensus 670 i~~G~V~~i~~fGaFV~l~~-g~eGLvHiSe-l~~~~s~~rv---------~~~~~~~~vGd~V~VkVi--~vd~-~grI 735 (757)
T 1e3p_A 670 RILGSVVKTTTFGAFVSLLP-GKDGLLHISQ-IRKLAGGKRV---------ENVEDVLGVGQKVQVEIA--EIDS-RGKL 735 (757)
T ss_dssp ---CBEEECC-CSCEECCC----CCCCC-----------------------------CCSSCBCCCCCC--CCCS-SCC-
T ss_pred EEEEEEEEccccEEEEEEcC-CcEEEEEhHH-hccccCCCcc---------cCcccccCCCCEEEEEEE--EECC-CCCE
Confidence 34677779999999999976 8999999997 4 22221 112467999999999988 9998 9999
Q ss_pred EEEEecC
Q psy4846 244 VLRLVRP 250 (279)
Q Consensus 244 ~~~lv~~ 250 (279)
.|+++..
T Consensus 736 ~LS~k~~ 742 (757)
T 1e3p_A 736 SLIPVIE 742 (757)
T ss_dssp -------
T ss_pred EEEEecC
Confidence 9999874
No 33
>3m7n_A Putative uncharacterized protein AF_0206; exosome, RNA, exonuclease, hydrolase, nuclease, hydrolase-RN; 2.40A {Archaeoglobus fulgidus} PDB: 2ba1_A 3m85_A
Probab=97.00 E-value=0.00065 Score=56.92 Aligned_cols=69 Identities=16% Similarity=-0.000 Sum_probs=53.3
Q ss_pred ccCCcceEEEEEeCeEEEEecCc---------ceeEEEEcccCCCCCceeeecCCceEeecCeEecCCCeEEEEEEeccc
Q psy4846 166 VQDEDGYVLYVRKNALQILIPKY---------GLEGTLFLRCDSPSVSWTYNEKEQSQSCGSVVFHSFDPVTVQLSLDRS 236 (279)
Q Consensus 166 ~~~~~g~V~~V~~~Gi~V~Lp~~---------giEG~V~l~~~~~~d~~~~~~~~~~l~~~~~~~~lGD~V~VkV~~~~v 236 (279)
...+.|.|++|.++|++|.|... +.+|+||+++ ....+. + .-...|++||.|+++|. +
T Consensus 58 GdiV~G~V~~V~~~ga~V~I~~v~~~~~~~~~~~~Gll~ise-i~~~~~----~-----~~~~~~~~GD~V~akVi--~- 124 (179)
T 3m7n_A 58 GDVVLGRVVDLRNSIALIEVSSKKGENRGPSNRGIGILHVSN-VDEGYV----K-----EISEAVGYLDILKARVI--G- 124 (179)
T ss_dssp TCEEEEEEEEECSSEEEEEEEEETTCCSCCTTCEEEEEEGGG-TTSSCC----S-----SGGGTCCTTCEEEEEEE--E-
T ss_pred CCEEEEEEEEEeCCcEEEEEccccCcccccccCeeEEEEHHH-cCcchh----h-----CHhhcCCCCCEEEEEEE--C-
Confidence 56679999999999999999764 8999999998 422210 0 11457999999999997 4
Q ss_pred cCCCCeEEEEEecCC
Q psy4846 237 NVQHEKLVLRLVRPV 251 (279)
Q Consensus 237 d~~~~~I~~~lv~~~ 251 (279)
+++.|++.++.
T Consensus 125 ----~~i~LS~k~~~ 135 (179)
T 3m7n_A 125 ----DNLRLSTKEEE 135 (179)
T ss_dssp ----TTTEEECCSTT
T ss_pred ----CeEEEEEecCC
Confidence 77899988753
No 34
>2nn6_I 3'-5' exoribonuclease CSL4 homolog; RNA, exosome, PM/SCL, phosphorolytic, hydrolase/transferase complex; 3.35A {Homo sapiens} SCOP: b.40.4.5 b.84.4.2
Probab=96.99 E-value=0.00048 Score=59.20 Aligned_cols=74 Identities=14% Similarity=0.005 Sum_probs=53.8
Q ss_pred CCcceEEEEEeCeEEEEec-------CcceeEEEEcccCCCCCceeeecCCceEeecCeEecCCCeEEEEEEeccccCCC
Q psy4846 168 DEDGYVLYVRKNALQILIP-------KYGLEGTLFLRCDSPSVSWTYNEKEQSQSCGSVVFHSFDPVTVQLSLDRSNVQH 240 (279)
Q Consensus 168 ~~~g~V~~V~~~Gi~V~Lp-------~~giEG~V~l~~~~~~d~~~~~~~~~~l~~~~~~~~lGD~V~VkV~~~~vd~~~ 240 (279)
.+.|.|++|+++|++|.|. ..+++|+||+++ .... +... ..-...|++||.|+++|. +++..+
T Consensus 84 vV~G~V~~v~~~~a~V~I~~v~~~~L~~~~~GlIhise-i~~~---~~~~----~~~~~~l~~GD~V~akVi--si~~~~ 153 (209)
T 2nn6_I 84 IVTCKVSSINSRFAKVHILYVGSMPLKNSFRGTIRKED-VRAT---EKDK----VEIYKSFRPGDIVLAKVI--SLGDAQ 153 (209)
T ss_dssp EEEEEEEEECSSEEEEEEEESSSSCCCCSSCSCEEEEG-GGTC---SSCC----CCGGGTCCSSSEEEEEEE--EEETTT
T ss_pred EEEEEEEEEECceEEEEECccccccccCCceeEEEHHH-cccc---cccc----cchhhhcCCCCEEEEEEE--EEeCCC
Confidence 3578888999999999984 236799999987 2111 0000 001346999999999998 888767
Q ss_pred CeEEEEEecCC
Q psy4846 241 EKLVLRLVRPV 251 (279)
Q Consensus 241 ~~I~~~lv~~~ 251 (279)
.++.|++.++.
T Consensus 154 ~~i~LS~k~~~ 164 (209)
T 2nn6_I 154 SNYLLTTAENE 164 (209)
T ss_dssp TEEEEECCSSS
T ss_pred CeEEEEEecCC
Confidence 78999998763
No 35
>2je6_I RRP4, exosome complex RNA-binding protein 1; nuclease, hydrolase, exonuclease, phosphorolytic, exoribonuclease, RNA degradation; HET: 1PE; 1.6A {Sulfolobus solfataricus} SCOP: b.40.4.5 b.84.4.2 d.51.1.1 PDB: 2jea_I* 2jeb_I* 3l7z_C
Probab=96.19 E-value=0.0031 Score=55.61 Aligned_cols=74 Identities=15% Similarity=-0.100 Sum_probs=54.2
Q ss_pred cCCcceEEEEEeCeEEEEecCcceeEEEEcccCCCCCceeeecCCceEeecCeEecCCCeEEEEEEeccccCCCCeEEEE
Q psy4846 167 QDEDGYVLYVRKNALQILIPKYGLEGTLFLRCDSPSVSWTYNEKEQSQSCGSVVFHSFDPVTVQLSLDRSNVQHEKLVLR 246 (279)
Q Consensus 167 ~~~~g~V~~V~~~Gi~V~Lp~~giEG~V~l~~~~~~d~~~~~~~~~~l~~~~~~~~lGD~V~VkV~~~~vd~~~~~I~~~ 246 (279)
..+.|.|+++.++|++|.|.. +.+|+||+++ ..+.+. ++. ..-...|++||.|.++|. +++. .+++.|+
T Consensus 76 DiV~G~V~~v~~~ga~VdI~~-~~~GlL~ise-i~~~~~--~~~----~~~~~~l~vGD~V~arVi--~v~~-~~~i~LS 144 (251)
T 2je6_I 76 DIVIGLVEDVEIYGWVVDIKA-PYKAYLPASN-LLGRSI--NVG----EDLRRYLDVGDYVIARIE--NFDR-SIDPVLS 144 (251)
T ss_dssp CEEEEEEEEECSSEEEEECSS-SSCEEEEHHH-HHTSCC--CTT----CCCSSSCCTTCEEEEEEE--EEET-TEEEEEE
T ss_pred CEEEEEEEEEeCceEEEEcCC-CeEEEEEHHH-hcCCcc--ccc----cchhhcCCCCCEEEEEEE--EECC-CCcEEEE
Confidence 356899999999999999976 7899999987 211111 110 111457999999999998 7775 3689999
Q ss_pred EecCC
Q psy4846 247 LVRPV 251 (279)
Q Consensus 247 lv~~~ 251 (279)
+.++.
T Consensus 145 ~r~~~ 149 (251)
T 2je6_I 145 VKGKD 149 (251)
T ss_dssp CCSTT
T ss_pred Ecccc
Confidence 87653
No 36
>3go5_A Multidomain protein with S1 RNA-binding domains; structural genomics, joint center for structural genomics, JCSG; HET: MSE; 1.40A {Streptococcus pneumoniae}
Probab=96.17 E-value=0.007 Score=54.31 Aligned_cols=71 Identities=15% Similarity=-0.032 Sum_probs=51.0
Q ss_pred cCCCc-ccCCcceEEEEE-eCeEEEEecCcceeEEEEcccCCCCCceeeecCCceEeecCeEecCCCeEEEEEEeccccC
Q psy4846 161 IPKSR-VQDEDGYVLYVR-KNALQILIPKYGLEGTLFLRCDSPSVSWTYNEKEQSQSCGSVVFHSFDPVTVQLSLDRSNV 238 (279)
Q Consensus 161 ~p~~~-~~~~~g~V~~V~-~~Gi~V~Lp~~giEG~V~l~~~~~~d~~~~~~~~~~l~~~~~~~~lGD~V~VkV~~~~vd~ 238 (279)
.|+.. ...+.|.|++++ ++|+||.+-.-+++|+||+++ ++ |.. ...+++||.|.|.| .+|.
T Consensus 64 ~p~~~~G~~~~g~V~~v~~~~GaFVdiG~~~~d~lvp~se-l~-----~~~--------~~~~~~Gd~v~v~l---~iD~ 126 (285)
T 3go5_A 64 EVTATQDQFGWGRVTEVRKDLGVFVDTGLPDKEIVVSLDI-LP-----ELK--------ELWPKKGDQLYIRL---EVDK 126 (285)
T ss_dssp CCCSCSSSCEEEEEEEEETTTEEEEECSCTTCCEEEEGGG-SC-----SSG--------GGSCCTTCEEEEEE---EECT
T ss_pred cccccCCCEEEEEEEEEccCceEEEEECCCCcEEEEEHHH-CC-----ccc--------ccccCCCCEEEEEE---EECC
Confidence 34433 334589999999 799999984215799999998 42 111 12469999998886 5666
Q ss_pred CCCeEEEEEec
Q psy4846 239 QHEKLVLRLVR 249 (279)
Q Consensus 239 ~~~~I~~~lv~ 249 (279)
+++|.+++.+
T Consensus 127 -~~Ri~ls~k~ 136 (285)
T 3go5_A 127 -KDRIWGLLAY 136 (285)
T ss_dssp -TSCEEEEECC
T ss_pred -CCcEEEEehh
Confidence 6899999864
No 37
>2z0s_A Probable exosome complex RNA-binding protein 1; alpha/beta protein, cytoplasm, structural genomics, NPPSFA; 3.20A {Aeropyrum pernix} SCOP: b.40.4.5 d.51.1.1
Probab=95.99 E-value=0.0048 Score=53.80 Aligned_cols=74 Identities=9% Similarity=-0.061 Sum_probs=52.6
Q ss_pred CCcceEEEEEeCeEEEEecCcceeEEEEcccCCCCCceeeecCCceEeecCeEecCCCeEEEEEEeccccCCCCeEEEEE
Q psy4846 168 DEDGYVLYVRKNALQILIPKYGLEGTLFLRCDSPSVSWTYNEKEQSQSCGSVVFHSFDPVTVQLSLDRSNVQHEKLVLRL 247 (279)
Q Consensus 168 ~~~g~V~~V~~~Gi~V~Lp~~giEG~V~l~~~~~~d~~~~~~~~~~l~~~~~~~~lGD~V~VkV~~~~vd~~~~~I~~~l 247 (279)
.+.|.|+++.++|++|.|.. +.+|+||+++ ..+... ++... .-...|++||.|.++|. +++. .+++.|++
T Consensus 69 iV~G~V~~v~~~~~~V~I~~-~~~g~l~ise-i~~~~~--~~~~~---~~~~~l~~GD~V~a~Vi--~v~~-~~~i~LS~ 138 (235)
T 2z0s_A 69 VVIGLIQSVGIMNWFVDINS-PYVAVLSVQD-FLGRPF--NPAVD---DMQSLLKVGDYIKAKVV--AFDK-TRSPLLTV 138 (235)
T ss_dssp CEEEEEEEECSSEEEEECSS-SSCEEEEHHH-HHTSCC--CTTTT---CCTTSSCTTCEEEEEEE--EECT-TSCEEEEC
T ss_pred EEEEEEEEEeCCeEEEEeCC-CeEEEEEHHH-hCCCcc--ccchh---hHhhcCCCCCEEEEEEE--EECC-CCcEEEEE
Confidence 45788889999999999975 7899999987 211100 00000 01347999999999998 7775 35899998
Q ss_pred ecCC
Q psy4846 248 VRPV 251 (279)
Q Consensus 248 v~~~ 251 (279)
.++.
T Consensus 139 k~~~ 142 (235)
T 2z0s_A 139 QGEG 142 (235)
T ss_dssp CSSS
T ss_pred eccc
Confidence 7653
No 38
>2ba0_A Archeal exosome RNA binding protein RRP4; RNAse PH, RNA degradation, exoribonuclease, S1domain, KH domain, archaeal; 2.70A {Archaeoglobus fulgidus} SCOP: b.40.4.5 b.84.4.2 d.51.1.1
Probab=95.96 E-value=0.009 Score=51.88 Aligned_cols=72 Identities=15% Similarity=0.095 Sum_probs=53.8
Q ss_pred cCCcceEEEEEeCeEEEEecCcceeEEEEcccCCCCCceeeecCCceEeecCeEecCCCeEEEEEEeccccCCCCeEEEE
Q psy4846 167 QDEDGYVLYVRKNALQILIPKYGLEGTLFLRCDSPSVSWTYNEKEQSQSCGSVVFHSFDPVTVQLSLDRSNVQHEKLVLR 246 (279)
Q Consensus 167 ~~~~g~V~~V~~~Gi~V~Lp~~giEG~V~l~~~~~~d~~~~~~~~~~l~~~~~~~~lGD~V~VkV~~~~vd~~~~~I~~~ 246 (279)
..+.|.|+++.+++++|.|.. ..+|+||+++ .....+. . .-...+++||.|.++|. +++. .+++.|+
T Consensus 59 DiV~G~V~~v~~~~a~V~I~~-~~~g~l~ise-v~~~~~~---~-----~~~~~l~~GD~V~arVi--~v~~-~~~i~LS 125 (229)
T 2ba0_A 59 DVVIGIIREVAANGWAVDIYS-PYQAFLPVSE-NPEMKPN---K-----KPNEVLDIGDAIIAKVL--NIDP-KMKVTLT 125 (229)
T ss_dssp CEEEEEEEEECSSEEEEECSS-SSCEEEEGGG-CTTCCTT---S-----CGGGTCCTTCEEEEEEE--EECT-TCCEEEE
T ss_pred CEEEEEEEEEeCCeEEEEeCC-CeEEEEEHHH-ccccccc---c-----chhcccCCCCEEEEEEE--EECC-CCcEEEE
Confidence 356899999999999999975 6799999998 3211000 0 01357999999999998 7775 4689999
Q ss_pred EecCC
Q psy4846 247 LVRPV 251 (279)
Q Consensus 247 lv~~~ 251 (279)
+.++.
T Consensus 126 ~r~~~ 130 (229)
T 2ba0_A 126 MKDRI 130 (229)
T ss_dssp CCSSS
T ss_pred Ecccc
Confidence 87653
No 39
>1hh2_P NUSA, N utilization substance protein A; transcription regulation, termination; 2.1A {Thermotoga maritima} SCOP: b.40.4.5 d.52.3.1 d.52.3.1 d.202.1.1 PDB: 1l2f_A
Probab=95.74 E-value=0.0097 Score=54.73 Aligned_cols=61 Identities=20% Similarity=0.054 Sum_probs=47.6
Q ss_pred cceEEEEEeCeEEEEecCcceeEEEEcccCCCCCceeeecCCceEeecCeEecCCCeEEEEEEeccccCCCC--eEEEEE
Q psy4846 170 DGYVLYVRKNALQILIPKYGLEGTLFLRCDSPSVSWTYNEKEQSQSCGSVVFHSFDPVTVQLSLDRSNVQHE--KLVLRL 247 (279)
Q Consensus 170 ~g~V~~V~~~Gi~V~Lp~~giEG~V~l~~~~~~d~~~~~~~~~~l~~~~~~~~lGD~V~VkV~~~~vd~~~~--~I~~~l 247 (279)
+|+|.++.+++++|.+. ++||++|.++ . + .+..|++||+|+|.|. +++...+ +|.+|-
T Consensus 139 ~G~V~ri~~~~v~VDlG--k~EgiLp~sE-~--------------i-p~E~~~vGD~Vkv~V~--~V~~~~kg~~I~LSR 198 (344)
T 1hh2_P 139 TAEVIRVMGEWADIRIG--KLETRLPKKE-W--------------I-PGEEIKAGDLVKVYII--DVVKTTKGPKILVSR 198 (344)
T ss_dssp EEEEEEECSSEEEEEET--TEEEEEEGGG-S--------------C-TTCCCCTTCEEEEEEE--EEEEETTEEEEEEES
T ss_pred EEEEEEEecCcEEEEeC--CeEEEEeHHH-c--------------C-CCcCCCCCCEEEEEEE--EEEcCCCCcEEEEEe
Confidence 67788999999999995 7999999987 2 1 2347999999999998 8886544 566665
Q ss_pred ecC
Q psy4846 248 VRP 250 (279)
Q Consensus 248 v~~ 250 (279)
..|
T Consensus 199 t~p 201 (344)
T 1hh2_P 199 RVP 201 (344)
T ss_dssp SSH
T ss_pred ecc
Confidence 543
No 40
>2bx2_L Ribonuclease E, RNAse E; RNA-binding, RNA turnover, RNA processing, hydrolase, endonu nuclease; 2.85A {Escherichia coli} PDB: 2c0b_L 2c4r_L 2vmk_A 2vrt_A 1slj_A 1smx_A 1sn8_A
Probab=92.00 E-value=0.17 Score=48.91 Aligned_cols=63 Identities=16% Similarity=0.046 Sum_probs=41.9
Q ss_pred CCcceEEEEEeC--eEEEEecCcceeEEEEcccCCCCCceeeecCCceEeecCeEecCCCeEEEEEE
Q psy4846 168 DEDGYVLYVRKN--ALQILIPKYGLEGTLFLRCDSPSVSWTYNEKEQSQSCGSVVFHSFDPVTVQLS 232 (279)
Q Consensus 168 ~~~g~V~~V~~~--Gi~V~Lp~~giEG~V~l~~~~~~d~~~~~~~~~~l~~~~~~~~lGD~V~VkV~ 232 (279)
.+.|.|.+|.++ |+||.+.. |-.|++|+++ ....++.-.........-...++.||.|.|+|.
T Consensus 48 IY~GkV~rv~p~~~aAFVdiG~-gk~gfLhise-i~~~~~~~~~~~~~~~~i~d~lk~Gq~VlVQV~ 112 (517)
T 2bx2_L 48 IYKGKITRIEPSLEAAFVDYGA-ERHGFLPLKE-IAREYFPANYSAHGRPNIKDVLREGQEVIVQID 112 (517)
T ss_dssp EEEEEEEEEETTTTEEEEESSS-SSCEEEEGGG-SCGGGCC-------CCCGGGTCCTTCEEEEEEE
T ss_pred EEEEEEEEeccCCceEEEEeCC-CcEEEEEHHH-cChhhhccccccccccchhhhccCCCEEEEEEE
Confidence 468889999999 99999986 8999999998 421221100000000001345899999999997
No 41
>2bh8_A 1B11; transcription, molecular evolution, unique architecture, transcription regulation, phosphorylation; 1.9A {Escherichia coli}
Probab=91.44 E-value=0.065 Score=40.35 Aligned_cols=31 Identities=16% Similarity=0.284 Sum_probs=27.5
Q ss_pred cCCcceEEEEEeCeEEEEecCcceeEEEEccc
Q psy4846 167 QDEDGYVLYVRKNALQILIPKYGLEGTLFLRC 198 (279)
Q Consensus 167 ~~~~g~V~~V~~~Gi~V~Lp~~giEG~V~l~~ 198 (279)
+.+++.|..+.++|+||.|+. +++|+||+++
T Consensus 63 e~V~g~V~~i~~fG~fv~l~~-~~eGlvhis~ 93 (101)
T 2bh8_A 63 DRVEGKIKSITDFGIFIGLDG-GIDGLVHLSD 93 (101)
T ss_dssp CEEEEEEEECCSEEEEECTTS-CEEEEEEEEE
T ss_pred CEEEEEEEEeCCcEEEEEcCC-CceEEEEHHH
Confidence 456788889999999999976 8999999987
No 42
>2nn6_H Exosome complex exonuclease RRP4; RNA, exosome, PM/SCL, phosphorolytic, hydrolase/transferase complex; 3.35A {Homo sapiens} SCOP: b.40.4.5 b.84.4.2 d.51.1.1
Probab=90.17 E-value=0.25 Score=44.62 Aligned_cols=77 Identities=10% Similarity=0.041 Sum_probs=49.9
Q ss_pred cCCcceEEEEEeCeEEEEecCcceeEEEEcccCCCCCceeeecCCceEee--c-CeEecCCCeEEEEEEeccccCCCCeE
Q psy4846 167 QDEDGYVLYVRKNALQILIPKYGLEGTLFLRCDSPSVSWTYNEKEQSQSC--G-SVVFHSFDPVTVQLSLDRSNVQHEKL 243 (279)
Q Consensus 167 ~~~~g~V~~V~~~Gi~V~Lp~~giEG~V~l~~~~~~d~~~~~~~~~~l~~--~-~~~~~lGD~V~VkV~~~~vd~~~~~I 243 (279)
..+.|.|++++.++++|.|.. ..++.++++. ...+...... ..... . ...|++||.|.++|. +++. ..++
T Consensus 97 DvViG~Vt~V~~~~a~VdI~s-~~~~~l~iS~-v~f~gg~iR~--~~~~D~~~m~~~l~vGDlV~ArVi--sv~~-~~~i 169 (308)
T 2nn6_H 97 DIVVGRITEVQQKRWKVETNS-RLDSVLLLSS-MNLPGGELRR--RSAEDELAMRGFLQEGDLISAEVQ--AVFS-DGAV 169 (308)
T ss_dssp BCCCEEEEEEETTEEEEECSS-SSCEEEESSC-CC---------------CHHHHHHSCSSCEECCEEE--EEET-TTEE
T ss_pred CEEEEEEEEEeCceEEEEECC-CcCCceechh-hccccceeec--ccchhhhhhhccCCCCCEEEEEEE--EcCC-CCCE
Confidence 357899999999999999974 4578888876 2111010000 00000 1 346999999999998 7763 5678
Q ss_pred EEEEecC
Q psy4846 244 VLRLVRP 250 (279)
Q Consensus 244 ~~~lv~~ 250 (279)
.|+..++
T Consensus 170 ~LStr~~ 176 (308)
T 2nn6_H 170 SLHTRSL 176 (308)
T ss_dssp EEECCSS
T ss_pred EEEecCc
Confidence 8887765
No 43
>1k0r_A NUSA; two component arrangement, S1 domain, two K-homology domains., structural genomics, PSI, protein structure initiative; 1.70A {Mycobacterium tuberculosis} SCOP: b.40.4.5 d.52.3.1 d.52.3.1 d.202.1.1
Probab=89.33 E-value=0.28 Score=45.32 Aligned_cols=63 Identities=10% Similarity=0.067 Sum_probs=45.1
Q ss_pred cceEEE----EEeCeEEEEecC--cceeEEEEcccCCCCCceeeecCCceEeecCeEecCCCeEEEEEEeccccCC--CC
Q psy4846 170 DGYVLY----VRKNALQILIPK--YGLEGTLFLRCDSPSVSWTYNEKEQSQSCGSVVFHSFDPVTVQLSLDRSNVQ--HE 241 (279)
Q Consensus 170 ~g~V~~----V~~~Gi~V~Lp~--~giEG~V~l~~~~~~d~~~~~~~~~~l~~~~~~~~lGD~V~VkV~~~~vd~~--~~ 241 (279)
+|+|.. +...+++|.|.. -++||.++.++-. .+..|+.||+|+|.|. +++.. ..
T Consensus 135 tG~V~r~~~~v~~~~v~VdLG~~~~k~EgiLP~~Eqi----------------P~E~~~~GDrVkvyV~--~V~~~~kgp 196 (366)
T 1k0r_A 135 AGVIQRDSRANARGLVVVRIGTETKASEGVIPAAEQV----------------PGESYEHGNRLRCYVV--GVTRGAREP 196 (366)
T ss_dssp EEEEECCHHHHHTTCEEEEECCSSSCEEEEECGGGSC----------------TTCCCCTTCEEEEEEE--EEECCSSSC
T ss_pred EEEEEEccccccCCeEEEEeCCCccceEEEEcHHHcC----------------CCccCCCCCEEEEEEE--EEecCCCcc
Confidence 455557 888889998852 1499999998711 1357999999999998 78765 34
Q ss_pred eEEEEEecC
Q psy4846 242 KLVLRLVRP 250 (279)
Q Consensus 242 ~I~~~lv~~ 250 (279)
+|.++-..|
T Consensus 197 qI~LSRT~p 205 (366)
T 1k0r_A 197 LITLSRTHP 205 (366)
T ss_dssp EEEEESSCH
T ss_pred EEEEEeCCh
Confidence 566665544
No 44
>2asb_A Transcription elongation protein NUSA; protein-RNA complex, transcription/RNA complex; 1.50A {Mycobacterium tuberculosis} SCOP: b.40.4.5 d.52.3.1 d.52.3.1 PDB: 2atw_A
Probab=89.03 E-value=0.31 Score=42.65 Aligned_cols=65 Identities=9% Similarity=0.044 Sum_probs=46.7
Q ss_pred CcceEEE----EEeCeEEEEecC--cceeEEEEcccCCCCCceeeecCCceEeecCeEecCCCeEEEEEEeccccCC--C
Q psy4846 169 EDGYVLY----VRKNALQILIPK--YGLEGTLFLRCDSPSVSWTYNEKEQSQSCGSVVFHSFDPVTVQLSLDRSNVQ--H 240 (279)
Q Consensus 169 ~~g~V~~----V~~~Gi~V~Lp~--~giEG~V~l~~~~~~d~~~~~~~~~~l~~~~~~~~lGD~V~VkV~~~~vd~~--~ 240 (279)
++|+|.. +....++|.|.. -+.||.++.++-. .+..|+.||+|+|.|. +++.. .
T Consensus 11 VtG~V~r~~~~v~~~~ViVdlG~~~~k~EgiLP~~Eqi----------------p~E~~~~GDrIkayV~--~V~~~~~g 72 (251)
T 2asb_A 11 VAGVIQRDSRANARGLVVVRIGTETKASEGVIPAAEQV----------------PGESYEHGNRLRCYVV--GVTRGARE 72 (251)
T ss_dssp EEEEEECCHHHHHTTCEEEEECSSSSCEEEEECGGGSC----------------TTCCCCTTCEEEEEEE--EEECCSSS
T ss_pred EEEEEEEccccccCCeEEEEeCCCCcceEEEEcHHHcC----------------CCccCCCCCEEEEEEE--EEEcCCCC
Confidence 3566668 677788888842 1489999988611 1457999999999988 77664 3
Q ss_pred CeEEEEEecCC
Q psy4846 241 EKLVLRLVRPV 251 (279)
Q Consensus 241 ~~I~~~lv~~~ 251 (279)
.+|.+|-..|.
T Consensus 73 pqIiLSRt~p~ 83 (251)
T 2asb_A 73 PLITLSRTHPN 83 (251)
T ss_dssp CEEEEESSCHH
T ss_pred CEEEEEeccHH
Confidence 67888776553
No 45
>1jjg_A M156R; beta barrel, S1 motif, OB fold, MYXV156R, NESG project, structural genomics, EIF-2A homolog, PSI, protein structure initiative; NMR {Myxoma virus} SCOP: b.40.4.5
Probab=84.59 E-value=1.8 Score=31.92 Aligned_cols=53 Identities=13% Similarity=0.159 Sum_probs=36.2
Q ss_pred EEEeCeEEEEecCc-ceeEEEEcccCCCCCceeeecCCceEeecCeEecCCCeEEEEEEeccccCC
Q psy4846 175 YVRKNALQILIPKY-GLEGTLFLRCDSPSVSWTYNEKEQSQSCGSVVFHSFDPVTVQLSLDRSNVQ 239 (279)
Q Consensus 175 ~V~~~Gi~V~Lp~~-giEG~V~l~~~~~~d~~~~~~~~~~l~~~~~~~~lGD~V~VkV~~~~vd~~ 239 (279)
.+.++-+.|.|++| |.|+.| . +++.++.++..-..+ ==+|-.|+|+|. .+|-.
T Consensus 41 y~kd~~fyV~L~dY~glEaii-----~--dYvnv~~dr~~klkk---kLVGKtIkVqVI--RvD~l 94 (102)
T 1jjg_A 41 YFKDGIFKVRLLGYEGHECIL-----L--DYLNYRQDTLDRLKE---RLVGRVIKTRVV--RADGL 94 (102)
T ss_dssp EEETTEEEEECTTTSSCEEEE-----C--TTCCSSCCCCCHHHH---HHTTCEEEEEEE--EECSS
T ss_pred EEeCCEEEEEecCCCCceeee-----e--hhhhhhHHHHHHHHH---HhcCceEEEEEE--EeccE
Confidence 67888999999999 999887 2 455555543321111 126888999987 77754
No 46
>3i4o_A Translation initiation factor IF-1; cytoplasm, protein biosynthesis; 1.47A {Mycobacterium tuberculosis} SCOP: b.40.4.5
Probab=80.85 E-value=1.5 Score=31.45 Aligned_cols=61 Identities=21% Similarity=0.244 Sum_probs=37.1
Q ss_pred cceEEEEEeCeE-EEEecCcceeEEEEcccCCCCCceeeecCCceEeecCeEecCCCeEEEEEEeccccCCCCeEEEEE
Q psy4846 170 DGYVLYVRKNAL-QILIPKYGLEGTLFLRCDSPSVSWTYNEKEQSQSCGSVVFHSFDPVTVQLSLDRSNVQHEKLVLRL 247 (279)
Q Consensus 170 ~g~V~~V~~~Gi-~V~Lp~~giEG~V~l~~~~~~d~~~~~~~~~~l~~~~~~~~lGD~V~VkV~~~~vd~~~~~I~~~l 247 (279)
.|.|+...++|. .|.+.+ |..-..+++-. +......+.+||.|.|.+. .-|..+++|.+..
T Consensus 17 ~G~Vik~l~n~~f~V~l~n-G~~~~c~i~GK--------------~Rk~~I~Il~GD~V~ve~~--~yd~~kgrIi~R~ 78 (79)
T 3i4o_A 17 EGRVVEPLPNAMFRIELEN-GHKVLAHISGK--------------MRQHYIRILPEDRVVVELS--PYDLSRGRIVYRY 78 (79)
T ss_dssp EEEEEEEETTTEEEEEETT-SCEEEEEECHH--------------HHHTTCCCCTTCEEEEEEE--TTEEEEEEEEEEC
T ss_pred EEEEEEEcCCCEEEEEeCC-CCEEEEEeCcc--------------eecCCccCCCCCEEEEEEC--ccCCCcEEEEEEc
Confidence 344447764454 566665 54444555430 0001235789999999987 7788888887753
No 47
>2ja9_A Exosome complex exonuclease RRP40; RNA-binding protein, RNA, S1 domain, KH domain, hydrolase, RNA-binding, nuclear protein; 2.20A {Saccharomyces cerevisiae} SCOP: b.40.4.5 d.51.1.1
Probab=80.77 E-value=2.2 Score=35.12 Aligned_cols=67 Identities=10% Similarity=0.112 Sum_probs=47.9
Q ss_pred CcceEEEEEeCeEEEEecCcceeEEEEcccCCCCCceeeecCCceEeecCeEecCCCeEEEEEEeccccCCCCeEEEEEe
Q psy4846 169 EDGYVLYVRKNALQILIPKYGLEGTLFLRCDSPSVSWTYNEKEQSQSCGSVVFHSFDPVTVQLSLDRSNVQHEKLVLRLV 248 (279)
Q Consensus 169 ~~g~V~~V~~~Gi~V~Lp~~giEG~V~l~~~~~~d~~~~~~~~~~l~~~~~~~~lGD~V~VkV~~~~vd~~~~~I~~~lv 248 (279)
+-|.|+.+..++++|.|-.+...|.+|+++ .++.. ++ -...+++||.|..+|. .++. ..++.|+.+
T Consensus 11 ViG~V~~v~~~~~~VdI~~~~~~a~L~~s~-~~g~~-----k~-----~r~~l~~GDlV~ArV~--~~~~-~~~~~Ltc~ 76 (175)
T 2ja9_A 11 VIGVIIGTFSDSYKVSLQNFSSSVSLSYMA-FPNAS-----KK-----NRPTLQVGDLVYARVC--TAEK-ELEAEIECF 76 (175)
T ss_dssp EEEEEEEECSSEEEEESSTTSCCEEEETTS-STTCC-----SS-----SCCCCCTTCEEEEEEE--ECCT-TSCCEEESS
T ss_pred EEEEEEEEECcEEEEEECCCCccEEEEHHH-CCchh-----hh-----hhccCCCCCEEEEEEE--EecC-CCceEEEec
Confidence 467788999999999997545789999987 32110 00 1457999999999997 6664 346777744
Q ss_pred c
Q psy4846 249 R 249 (279)
Q Consensus 249 ~ 249 (279)
.
T Consensus 77 ~ 77 (175)
T 2ja9_A 77 D 77 (175)
T ss_dssp C
T ss_pred c
Confidence 3
No 48
>2rf4_A DNA-directed RNA polymerase I subunit RPA4; transferase DNA/RNA, DNA-binding, phosphorylation, POL I, POLI, rpoli, nuclear protein; 3.10A {Saccharomyces cerevisiae}
Probab=79.22 E-value=2.1 Score=36.31 Aligned_cols=70 Identities=11% Similarity=0.202 Sum_probs=45.2
Q ss_pred cCCCcccCCcceEEEEEeCeEEEEecCcceeEEEEcccCCCCCceeeecCC-----ceEeec-CeEecCCCeEEEEEEec
Q psy4846 161 IPKSRVQDEDGYVLYVRKNALQILIPKYGLEGTLFLRCDSPSVSWTYNEKE-----QSQSCG-SVVFHSFDPVTVQLSLD 234 (279)
Q Consensus 161 ~p~~~~~~~~g~V~~V~~~Gi~V~Lp~~giEG~V~l~~~~~~d~~~~~~~~-----~~l~~~-~~~~~lGD~V~VkV~~~ 234 (279)
.|+ ....++|.|..+++.|+.+.+-+ .+...|+-.. +|.+ |.|++.+ ...+.. +. ++|+.|+++|.
T Consensus 126 rPf-~GevL~G~V~~~s~~~Ig~~~~G-~Fn~~Ip~~~-ip~~-~~f~~~~~~~~~~~wv~~~~~--~ig~~IRFrV~-- 197 (214)
T 2rf4_A 126 QPQ-VGDVLEGYIFIQSASHIGLLIHD-AFNASIKKNN-IPVD-WTFVHNDGNRSLGHWVDSNGE--PIDGKLRFTVR-- 197 (214)
T ss_dssp CCC-TTCEEEEEECCCCSSCEEEEETT-TEEEEECSTT-SCSS-CBCCCCSCC-CCCCCBCSSCC--BCCSEEEEEEE--
T ss_pred ecC-CCCEEEEEEEEECCCcEEEEEeC-CEEEEEcHHH-CCCc-ccccccccccCCCceEcCCCC--CCCCEEEEEEE--
Confidence 455 34557899999999999887644 3455666665 6644 6777754 122221 22 36999999987
Q ss_pred cccC
Q psy4846 235 RSNV 238 (279)
Q Consensus 235 ~vd~ 238 (279)
+++.
T Consensus 198 ~~~~ 201 (214)
T 2rf4_A 198 NVHT 201 (214)
T ss_dssp EEEC
T ss_pred EEEe
Confidence 6654
No 49
>2bh8_A 1B11; transcription, molecular evolution, unique architecture, transcription regulation, phosphorylation; 1.9A {Escherichia coli}
Probab=74.23 E-value=4.8 Score=29.84 Aligned_cols=54 Identities=11% Similarity=-0.074 Sum_probs=34.4
Q ss_pred cceEEEE---EeCeEEEEecCcceeEEEEcccCCCCCceeeecCCceEeecCeEecCCCeEEEEEEeccccC
Q psy4846 170 DGYVLYV---RKNALQILIPKYGLEGTLFLRCDSPSVSWTYNEKEQSQSCGSVVFHSFDPVTVQLSLDRSNV 238 (279)
Q Consensus 170 ~g~V~~V---~~~Gi~V~Lp~~giEG~V~l~~~~~~d~~~~~~~~~~l~~~~~~~~lGD~V~VkV~~~~vd~ 238 (279)
+|+|... +.+| ||.-++-+.+.+||.++ +..+.+ ....+++|+.|+..|. .+..
T Consensus 18 ~G~Vk~fn~~kGfG-FI~~~~gg~dvfvH~s~-l~~~~~-----------~~~~l~~Ge~V~g~V~--~i~~ 74 (101)
T 2bh8_A 18 TGIVKWFNADKGFG-FITPDDGSKDVFVHFSA-GSSGAA-----------VRGNPQQGDRVEGKIK--SITD 74 (101)
T ss_dssp EEEEEEEEGGGTEE-EEEESSSSCEEEEECCC-SCSSSC-----------CCCCCCTTCEEEEEEE--ECCS
T ss_pred eeEEEEEECCCCCE-EEEeCCCCcEEEEEEEE-EecCCc-----------cccCCCCCCEEEEEEE--EeCC
Confidence 4555566 3455 56555556899999998 422211 0146899999999986 5543
No 50
>2ytx_A Cold shock domain-containing protein E1; cell-free protein synthesis, beta-barrel, translational REGU RNA chaperone, RNA/DNA binding, QB fold; NMR {Homo sapiens}
Probab=65.63 E-value=16 Score=26.79 Aligned_cols=63 Identities=17% Similarity=0.033 Sum_probs=36.1
Q ss_pred cceEEEEEeCeE-EEEecCcceeEEEEcccCCCCCceeeecCCceEeecCeEecCCCeEEEEEEeccccCCCCeEEEEEe
Q psy4846 170 DGYVLYVRKNAL-QILIPKYGLEGTLFLRCDSPSVSWTYNEKEQSQSCGSVVFHSFDPVTVQLSLDRSNVQHEKLVLRLV 248 (279)
Q Consensus 170 ~g~V~~V~~~Gi-~V~Lp~~giEG~V~l~~~~~~d~~~~~~~~~~l~~~~~~~~lGD~V~VkV~~~~vd~~~~~I~~~lv 248 (279)
.|+|... ..|+ ||.-++-+-+-++|.++ +..+ ...++.||+|...+. .-+-..+-+.+.++
T Consensus 20 ~G~Vkwf-~KGfGFI~~ddg~~DvFvH~s~-i~~~--------------~~~L~~G~~V~F~v~--~~~~g~~A~~V~~~ 81 (97)
T 2ytx_A 20 QGVVCAM-KEAFGFIERGDVVKEIFFHYSE-FKGD--------------LETLQPGDDVEFTIK--DRNGKEVATDVRLL 81 (97)
T ss_dssp EEEECCC-CSSEEEEECSSSCCCEEEETTT-CCSC--------------TTSCCSCCEEEEEEC--CCSSSCBEEEEEEC
T ss_pred eEEEEEE-eCCceEEecCCCCceEEEEehH-hccc--------------cCCCCCCCEEEEEEE--cCCCCcEEEEEEEC
Confidence 4555555 5555 44434434678888887 3211 236789999999874 32222244556655
Q ss_pred cC
Q psy4846 249 RP 250 (279)
Q Consensus 249 ~~ 250 (279)
..
T Consensus 82 ~~ 83 (97)
T 2ytx_A 82 PQ 83 (97)
T ss_dssp CC
T ss_pred CC
Confidence 43
No 51
>1d7q_A Translation initiation factor 1A; OB-fold, beta-barrel, RNA-binding protein, gene regulation; NMR {Homo sapiens} SCOP: b.40.4.5
Probab=62.21 E-value=21 Score=28.31 Aligned_cols=66 Identities=15% Similarity=0.127 Sum_probs=47.6
Q ss_pred CCcceEEEEEeCeEE-EEecCcceeEEEEcccCCCCCceeeecCCceEeecCeEecCCCeEEEEEEeccccCCCCeEEEE
Q psy4846 168 DEDGYVLYVRKNALQ-ILIPKYGLEGTLFLRCDSPSVSWTYNEKEQSQSCGSVVFHSFDPVTVQLSLDRSNVQHEKLVLR 246 (279)
Q Consensus 168 ~~~g~V~~V~~~Gi~-V~Lp~~giEG~V~l~~~~~~d~~~~~~~~~~l~~~~~~~~lGD~V~VkV~~~~vd~~~~~I~~~ 246 (279)
...|.|+....++.| |.+++ |.+-++|++..+ + ...-+..||.|.|.+. .-+..+.+|.+.
T Consensus 32 e~~g~V~e~lgn~~f~V~l~n-G~~~La~I~GKm------------R---k~IwI~~GD~VlVe~~--~yd~~KG~Ii~r 93 (143)
T 1d7q_A 32 QEYAQVIKMLGNGRLEAMCFD-GVKRLCHIRGKL------------R---KKVWINTSDIILVGLR--DYQDNKADVILK 93 (143)
T ss_dssp EEEEEEEEECSSSEEEEEETT-TEEEEEECCSGG------------G---GSCCCCTTCEEEEECS--SSSSSCCEEEEE
T ss_pred EEEEEEEEEcCCCEEEEEeCC-CCEEEEEecccc------------e---eeEEecCCCEEEEeec--cCCCCeEEEEEE
Confidence 456677788877764 55665 888888887511 0 0235789999999986 778889999999
Q ss_pred EecCC
Q psy4846 247 LVRPV 251 (279)
Q Consensus 247 lv~~~ 251 (279)
+..+.
T Consensus 94 ~~~de 98 (143)
T 1d7q_A 94 YNADE 98 (143)
T ss_dssp ECTTT
T ss_pred eCHHH
Confidence 87553
No 52
>2k5n_A Putative cold-shock protein; GFT protein structure, PSI, nesgc, OB fold, cold shock structural genomics; NMR {Pectobacterium atrosepticum}
Probab=56.16 E-value=47 Score=22.98 Aligned_cols=13 Identities=15% Similarity=0.153 Sum_probs=11.4
Q ss_pred EecCCCeEEEEEE
Q psy4846 220 VFHSFDPVTVQLS 232 (279)
Q Consensus 220 ~~~lGD~V~VkV~ 232 (279)
.++.||+|...+.
T Consensus 39 ~l~~G~~V~F~~~ 51 (74)
T 2k5n_A 39 LIKKDAAVTFEPT 51 (74)
T ss_dssp GCCTTCEEEEEEE
T ss_pred CCCCCCEEEEEEE
Confidence 6899999999885
No 53
>2dgy_A MGC11102 protein; EIF-1A, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=53.31 E-value=32 Score=25.98 Aligned_cols=65 Identities=12% Similarity=0.064 Sum_probs=44.4
Q ss_pred CCcceEEEEEeCeEE-EEecCcceeEEEEcccCCCCCceeeecCCceEeecCeEecCCCeEEEEEEecccc-CCCCeEEE
Q psy4846 168 DEDGYVLYVRKNALQ-ILIPKYGLEGTLFLRCDSPSVSWTYNEKEQSQSCGSVVFHSFDPVTVQLSLDRSN-VQHEKLVL 245 (279)
Q Consensus 168 ~~~g~V~~V~~~Gi~-V~Lp~~giEG~V~l~~~~~~d~~~~~~~~~~l~~~~~~~~lGD~V~VkV~~~~vd-~~~~~I~~ 245 (279)
...|.|+....++.| |.+++ |.+-++|++..+ + ...-+..||.|.|.+. .-+ ..+.+|.+
T Consensus 16 e~~g~V~~~lgn~~f~V~l~n-G~~~la~i~GK~------------R---k~IwI~~GD~VlVe~~--~yd~~~kg~Iv~ 77 (111)
T 2dgy_A 16 QQIVRVLRTPGNNLHEVETAQ-GQRFLVSMPSKY------------R---KNIWIKRGDFLIVDPI--EEGEKVKAEISF 77 (111)
T ss_dssp CEEEEEEECCSSSEEEEECTT-SCEEEEECCTTC------------C---SCCCCCSSCEEEEEEC--SSCSSCCEEEEE
T ss_pred eEEEEEEEeCCCCEEEEEeCC-CCEEEEEechhh------------c---ccEEEcCCCEEEEEec--ccCCcceEEEEE
Confidence 345666677776664 55665 888888887511 0 1234789999999986 555 67888988
Q ss_pred EEecC
Q psy4846 246 RLVRP 250 (279)
Q Consensus 246 ~lv~~ 250 (279)
.+..+
T Consensus 78 r~~~~ 82 (111)
T 2dgy_A 78 VLCKD 82 (111)
T ss_dssp ECCHH
T ss_pred EeCHH
Confidence 87654
No 54
>1wfq_A UNR protein; beta-barrel, translational regulation, RNA chaperone, RNA/DN binding, QB fold, greek-KEY topology, structur genomics; NMR {Homo sapiens} SCOP: b.40.4.5
Probab=52.29 E-value=49 Score=23.80 Aligned_cols=47 Identities=11% Similarity=-0.060 Sum_probs=30.6
Q ss_pred cceEEEEEeCeE-EEEecCcceeEEEEcccCCCCCceeeecCCceEeecCeEecCCCeEEEEEE
Q psy4846 170 DGYVLYVRKNAL-QILIPKYGLEGTLFLRCDSPSVSWTYNEKEQSQSCGSVVFHSFDPVTVQLS 232 (279)
Q Consensus 170 ~g~V~~V~~~Gi-~V~Lp~~giEG~V~l~~~~~~d~~~~~~~~~~l~~~~~~~~lGD~V~VkV~ 232 (279)
.|+|.... .|+ ||.-++-+-+-+||+++ +..+ ...++.||+|...+.
T Consensus 20 ~G~Vkwf~-KGfGFI~~ddgg~DVFvH~s~-i~~~--------------~~~L~~G~~V~F~v~ 67 (89)
T 1wfq_A 20 TGVIEKLL-TSYGFIQCSERQARLFFHCSQ-YNGN--------------LQDLKVGDDVEFEVS 67 (89)
T ss_dssp EEEEEEEC-SSEEEEEETTTTEEEEEETTT-CSSC--------------TTTCCTTCCEEEEEE
T ss_pred ceEEEEEe-CCeeEEecCCCCccEEEEhHH-hhCc--------------cCCCCCCCEEEEEEE
Confidence 46666664 555 45445534788999987 3211 236789999999885
No 55
>1jt8_A EIF-1A, probable translation initiation factor 1A; beta barrel, translation factor; NMR {Methanocaldococcus jannaschii} SCOP: b.40.4.5
Probab=44.88 E-value=5.3 Score=29.96 Aligned_cols=72 Identities=13% Similarity=0.062 Sum_probs=46.5
Q ss_pred hcCCCcccCCcceEEEEEeCeE-EEEecCcceeEEEEcccCCCCCceeeecCCceEeecCeEecCCCeEEEEEEecccc-
Q psy4846 160 LIPKSRVQDEDGYVLYVRKNAL-QILIPKYGLEGTLFLRCDSPSVSWTYNEKEQSQSCGSVVFHSFDPVTVQLSLDRSN- 237 (279)
Q Consensus 160 ~~p~~~~~~~~g~V~~V~~~Gi-~V~Lp~~giEG~V~l~~~~~~d~~~~~~~~~~l~~~~~~~~lGD~V~VkV~~~~vd- 237 (279)
.+|........|.|+....++. .|.+++ |.+-+.|++.. +. ...-+..||.|.|.+. .-+
T Consensus 13 ~~P~~~e~e~~g~V~~~lgn~~~~V~l~n-G~~~la~i~GK--------------mR-k~IwI~~GD~VlVe~~--~yd~ 74 (102)
T 1jt8_A 13 RIPRKEENEILGIIEQMLGASRVRVRCLD-GKTRLGRIPGR--------------LK-NRIWVREGDVVIVKPW--EVQG 74 (102)
T ss_dssp CCSCCSSCCEEEEEECSSCSSEEEEEEET-TEEEEEECCHH--------------HH-HHHCCCSCEEEEECCB--CCTT
T ss_pred ccCCCCCCEEEEEEEEEcCCCEEEEEECC-CCEEEEEEccc--------------ce-eeEEecCCCEEEEEec--cCCC
Confidence 3555334456777777777666 456665 88888887651 00 0234789999999876 555
Q ss_pred CCCCeEEEEEec
Q psy4846 238 VQHEKLVLRLVR 249 (279)
Q Consensus 238 ~~~~~I~~~lv~ 249 (279)
..+++|.+.+..
T Consensus 75 ~~Kg~Iv~r~~~ 86 (102)
T 1jt8_A 75 DQKCDIIWRYTK 86 (102)
T ss_dssp SEEEEEEEESSC
T ss_pred CceEEEEEEeCH
Confidence 567777776654
No 56
>3h8z_A FragIle X mental retardation syndrome-related Pro; tudor domains, FXR2, structura genomics, structural genomics consortium, SGC; 1.92A {Homo sapiens} PDB: 3o8v_A 3kuf_A 2bkd_N*
Probab=41.85 E-value=32 Score=26.71 Aligned_cols=51 Identities=16% Similarity=0.094 Sum_probs=32.1
Q ss_pred CCcceEEEEEeCeEEEEecC-cceeEEEEcccCCCCCceeeecCCceEeec---CeEecCCCeEEEEE
Q psy4846 168 DEDGYVLYVRKNALQILIPK-YGLEGTLFLRCDSPSVSWTYNEKEQSQSCG---SVVFHSFDPVTVQL 231 (279)
Q Consensus 168 ~~~g~V~~V~~~Gi~V~Lp~-~giEG~V~l~~~~~~d~~~~~~~~~~l~~~---~~~~~lGD~V~VkV 231 (279)
.+.|+|..|.++++.|...+ ...+-.|++++ .++... ...+.+||+|+|--
T Consensus 17 ~y~a~V~~v~~d~~~V~f~n~w~~~~~vp~~~-------------vRlpP~~~~~~~f~~gd~VEV~~ 71 (128)
T 3h8z_A 17 FYKGFVKDVHEDSVTIFFENNWQSERQIPFGD-------------VRLPPPADYNKEITEGDEVEVYS 71 (128)
T ss_dssp EEEEEEEEECSSEEEEEETTCTTCCEEEEGGG-------------EECCCCC----CCCTTCEEEEEE
T ss_pred EEEEEEEEEeCCcEEEEEccccCcceEechhh-------------EEcCCCcccccCCCCCCEEEEEe
Confidence 34677779999999998864 22245666655 111111 34689999999964
No 57
>2eqk_A Tudor domain-containing protein 4; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=41.07 E-value=23 Score=25.53 Aligned_cols=40 Identities=18% Similarity=0.315 Sum_probs=32.3
Q ss_pred hhhcCCCcccCCcceEEEEEe-CeEEEEecCcceeEEEEccc
Q psy4846 158 QILIPKSRVQDEDGYVLYVRK-NALQILIPKYGLEGTLFLRC 198 (279)
Q Consensus 158 ~~~~p~~~~~~~~g~V~~V~~-~Gi~V~Lp~~giEG~V~l~~ 198 (279)
+.+||.+ .+...|.|..+.. +-+.|.+-|||.+-.|++..
T Consensus 29 aak~~d~-n~WyRakV~~v~~~~~veVl~~DyGn~~~V~~~~ 69 (85)
T 2eqk_A 29 AVKIQDK-NQWRRGQIIRMVTDTLVEVLLYDVGVELVVNVDC 69 (85)
T ss_dssp EEECSSS-CCEEEEEEEEECSSSEEEEECTTTCCEEEEETTT
T ss_pred EEEeCCC-CeEEEEEEEEecCCCeEEEEEEccCCEEEEEccc
Confidence 5667744 4889999999987 56788899999999998764
No 58
>2oqk_A Putative translation initiation factor EIF-1A; malaria, eukaryotic initiation facto SGC, structural genomics; 1.80A {Cryptosporidium parvum iowa II}
Probab=38.03 E-value=39 Score=25.63 Aligned_cols=61 Identities=18% Similarity=0.108 Sum_probs=34.5
Q ss_pred cceEEEEEeCeE-EEEecCcceeEEEEcccCCCCCceeeecCCceEeecCeEecCCCeEEEEEEeccccCCCCeEEEEEe
Q psy4846 170 DGYVLYVRKNAL-QILIPKYGLEGTLFLRCDSPSVSWTYNEKEQSQSCGSVVFHSFDPVTVQLSLDRSNVQHEKLVLRLV 248 (279)
Q Consensus 170 ~g~V~~V~~~Gi-~V~Lp~~giEG~V~l~~~~~~d~~~~~~~~~~l~~~~~~~~lGD~V~VkV~~~~vd~~~~~I~~~lv 248 (279)
.|.|+....+++ .|.+++ |..-+++++.. +.. ...+.+||.|.|.+. .-+..+..|...+-
T Consensus 35 ~G~Vi~~lgn~~y~V~~~d-G~~~l~~i~GK--------------~Rk-~I~i~~GD~V~ve~~--~~~~~kG~I~~~~~ 96 (117)
T 2oqk_A 35 YGQVQRMLGNGRLDAYCFD-GQKRLCHIRGK--------------MRK-KVWVNPGDIVLVSLR--DFQDSKGDIILKYT 96 (117)
T ss_dssp EEEEEEEEETTEEEEEETT-SCEEEEECCHH--------------HHH-HSCCCTTCEEEEEEC--TTCTTEEEEEEECC
T ss_pred EEEEEEEcCCCEEEEEeCC-CCEEEEEEcCc--------------eec-CCcCCCCCEEEEEEE--cCCCCeEEEEEEec
Confidence 455557877444 555665 55445555430 000 223569999999864 44544556665554
No 59
>3cam_A Cold-shock domain family protein; cold shock protein, chain SWAP, STRU genomics, oxford protein production facility, OPPF, gene RE; 2.60A {Neisseria meningitidis MC58}
Probab=37.17 E-value=90 Score=20.93 Aligned_cols=47 Identities=11% Similarity=0.077 Sum_probs=27.4
Q ss_pred ceEEEEE-eCeE-EEEecCcceeEEEEcccCCCCCceeeecCCceEeecC-eEecCCCeEEEEEE
Q psy4846 171 GYVLYVR-KNAL-QILIPKYGLEGTLFLRCDSPSVSWTYNEKEQSQSCGS-VVFHSFDPVTVQLS 232 (279)
Q Consensus 171 g~V~~V~-~~Gi-~V~Lp~~giEG~V~l~~~~~~d~~~~~~~~~~l~~~~-~~~~lGD~V~VkV~ 232 (279)
|+|.... ..|+ |+.-++-+-+-++|.++ +. ..+ ..++.||+|...+.
T Consensus 4 G~Vk~fn~~kGfGFI~~~~gg~dvFvH~s~-i~--------------~~g~~~l~~G~~V~f~~~ 53 (67)
T 3cam_A 4 GIVKWFNDAKGFGFITPDEGGEDLFAHFSA-IN--------------MEGFKTLKEGQRVSFDVT 53 (67)
T ss_dssp EEEEEEETTTTEEEEEETTSCCCEEEEGGG-BC--------------GGGGSSCCTTCEEEEEEE
T ss_pred EEEEEEECCCCeEEEecCCCCccEEEEHHH-cc--------------ccCCCCCCCCCEEEEEEE
Confidence 4444444 2333 33333435678888876 21 112 46899999999875
No 60
>3d0f_A Penicillin-binding 1 transmembrane protein MRCA; BIG_1156.2, STR genomics, PSI-2, protein structure initiative; 1.64A {Nitrosomonas europaea atcc 19718}
Probab=36.56 E-value=21 Score=26.31 Aligned_cols=52 Identities=12% Similarity=-0.001 Sum_probs=30.9
Q ss_pred eEEEEEeCeEEEEecCcceeEEEEcccCCCCCceeeecCCc-eEee-cCeEecCCCeEEEE
Q psy4846 172 YVLYVRKNALQILIPKYGLEGTLFLRCDSPSVSWTYNEKEQ-SQSC-GSVVFHSFDPVTVQ 230 (279)
Q Consensus 172 ~V~~V~~~Gi~V~Lp~~giEG~V~l~~~~~~d~~~~~~~~~-~l~~-~~~~~~lGD~V~Vk 230 (279)
.|+.+.++++.|.+.+ |-++.|...+ + .|-..-. .-.. ....++.||.|.|+
T Consensus 40 vV~~v~~~~~~v~~~~-g~~~~l~~~~-~-----~WA~~~~~~~~~~~~~~l~~GdvI~V~ 93 (106)
T 3d0f_A 40 VVLSATPGAVEAFRKN-GETIRITGDG-L-----KAAHRFLSNDPKIGEKRIRPGALIRVK 93 (106)
T ss_dssp EEEEEETTEEEEEETT-SCEEEECGGG-G-----STTGGGTTTCTTTGGGSCCTTEEEEEE
T ss_pred EEEEeCCCeEEEEEcC-CCeEEEcHHH-C-----hhhhhcccccccchhccCCCCCEEEEE
Confidence 3348999999998865 5566666654 2 2211000 0001 13468999999998
No 61
>1ah9_A IF1, initiation factor 1; ribosome binding, protein-RNA interaction, OB fold; NMR {Escherichia coli} SCOP: b.40.4.5
Probab=36.00 E-value=48 Score=22.53 Aligned_cols=48 Identities=23% Similarity=0.231 Sum_probs=26.4
Q ss_pred cceEEEEEeCeE-EEEecCcceeEEEEcccCCCCCceeeecCCceEeecCeEecCCCeEEEEEE
Q psy4846 170 DGYVLYVRKNAL-QILIPKYGLEGTLFLRCDSPSVSWTYNEKEQSQSCGSVVFHSFDPVTVQLS 232 (279)
Q Consensus 170 ~g~V~~V~~~Gi-~V~Lp~~giEG~V~l~~~~~~d~~~~~~~~~~l~~~~~~~~lGD~V~VkV~ 232 (279)
.|.|+....+|+ .|.+++ |-.-..+++.. +........+||.|.|.+.
T Consensus 9 ~G~Vi~~lg~~~y~V~~~~-g~~~~~~i~Gk--------------~Rk~~i~i~vGD~V~ve~~ 57 (71)
T 1ah9_A 9 QGTVLETLPNTMFRVELEN-GHVVTAHISGK--------------MRKNYIRILTGDKVTVELT 57 (71)
T ss_dssp CEEEEEECSSSEEEEEETT-SCEEEEEECSS--------------GGGTTCCCCTTCEECCEEC
T ss_pred EEEEEEEeCCcEEEEEECC-CCEEEEEEcce--------------EeccCccCCCCCEEEEEEe
Confidence 566668877454 455555 43334444430 0001234569999998864
No 62
>1g6p_A Cold shock protein TMCSP; greek-KEY, beta barrel, OB-fold, structural genomics; NMR {Thermotoga maritima} SCOP: b.40.4.5
Probab=35.08 E-value=90 Score=20.80 Aligned_cols=14 Identities=7% Similarity=0.076 Sum_probs=11.5
Q ss_pred eEecCCCeEEEEEE
Q psy4846 219 VVFHSFDPVTVQLS 232 (279)
Q Consensus 219 ~~~~lGD~V~VkV~ 232 (279)
..++.||+|...+.
T Consensus 38 ~~l~~G~~V~f~~~ 51 (66)
T 1g6p_A 38 KTLKEGQVVEFEIQ 51 (66)
T ss_dssp CCCCSSSEEEEEEE
T ss_pred CCCCCCCEEEEEEE
Confidence 46889999999875
No 63
>3a0j_A Cold shock protein; OB-fold, cytoplasm, transcription, structural genomics, NPPSFA; 1.65A {Thermus thermophilus}
Probab=34.99 E-value=1.1e+02 Score=20.90 Aligned_cols=47 Identities=11% Similarity=0.086 Sum_probs=27.6
Q ss_pred ceEEEEE-eCeEEEEecCcceeEEEEcccCCCCCceeeecCCceEeecC-eEecCCCeEEEEEE
Q psy4846 171 GYVLYVR-KNALQILIPKYGLEGTLFLRCDSPSVSWTYNEKEQSQSCGS-VVFHSFDPVTVQLS 232 (279)
Q Consensus 171 g~V~~V~-~~Gi~V~Lp~~giEG~V~l~~~~~~d~~~~~~~~~~l~~~~-~~~~lGD~V~VkV~ 232 (279)
|+|.... ..|+=...|+-|-+-++|.++ +. ..+ ..++.||+|...+.
T Consensus 4 G~Vk~fn~~kGfGFI~~~~g~dvFvH~s~-i~--------------~~g~~~l~~G~~V~f~~~ 52 (73)
T 3a0j_A 4 GRVKWFNAEKGYGFIEREGDTDVFVHYTA-IN--------------AKGFRTLNEGDIVTFDVE 52 (73)
T ss_dssp EEEEEEETTTTEEEEECTTSCCEEEEGGG-BC--------------SSSCSSCCTTCEEEEEEE
T ss_pred EEEEEEECCCCEEEEecCCCCcEEEEhhh-cc--------------ccCCCCCCCCCEEEEEEE
Confidence 4444554 334422224446678888887 31 112 46889999999885
No 64
>2p9r_A Alpha-2-M, alpha-2-macroglobulin; human alpha2-macroglobulin, Mg2 domain, X-RAY, signaling protein; 2.30A {Homo sapiens}
Probab=34.74 E-value=78 Score=22.55 Aligned_cols=33 Identities=12% Similarity=0.164 Sum_probs=19.3
Q ss_pred CeEecCCCeEEEEEEecccc--CCCCe-EEEEEecC
Q psy4846 218 SVVFHSFDPVTVQLSLDRSN--VQHEK-LVLRLVRP 250 (279)
Q Consensus 218 ~~~~~lGD~V~VkV~~~~vd--~~~~~-I~~~lv~~ 250 (279)
...|+.||.|.+++.+-+.+ +.... +.++|..|
T Consensus 10 r~iYrPGetV~~~~~~~~~~~~p~~~~~~~v~l~dp 45 (102)
T 2p9r_A 10 KSIYKPGQTVKFRVVSMDENFHPLNELIPLVYIQDP 45 (102)
T ss_dssp CSEECTTCEEEEEEEEECGGGCBCCCEEEEEEEECT
T ss_pred CcccCCCCEEEEEEEEECCCCcCCCCCceEEEEECC
Confidence 44688888888887633222 22233 56666655
No 65
>2yty_A Cold shock domain-containing protein E1; cell-free protein synthesis, beta-barrel, translational REGU RNA chaperone, RNA/DNA binding, QB fold; NMR {Homo sapiens}
Probab=32.78 E-value=46 Score=23.84 Aligned_cols=48 Identities=19% Similarity=0.023 Sum_probs=30.4
Q ss_pred CcceEEEEEeCeE-EEEecCcceeEEEEcccCCCCCceeeecCCceEeecCeEecCCCeEEEEEE
Q psy4846 169 EDGYVLYVRKNAL-QILIPKYGLEGTLFLRCDSPSVSWTYNEKEQSQSCGSVVFHSFDPVTVQLS 232 (279)
Q Consensus 169 ~~g~V~~V~~~Gi-~V~Lp~~giEG~V~l~~~~~~d~~~~~~~~~~l~~~~~~~~lGD~V~VkV~ 232 (279)
..|.|.... .|+ |+.-++-+-+-++|.+. +..+ ...++.||+|...+.
T Consensus 19 ~~G~Vk~f~-kGfGFI~~ddgg~DvFvH~S~-i~~~--------------~~~L~~G~~V~F~~~ 67 (88)
T 2yty_A 19 LLGYVATLK-DNFGFIETANHDKEIFFHYSE-FSGD--------------VDSLELGDMVEYSLS 67 (88)
T ss_dssp EEEEEEEEC-SSEEEEECSSSSCEEEEETTT-CCSC--------------TTTCCTTCEEEECCC
T ss_pred eeEEEEEEE-CCccEEecCCCCceEEEEEhh-hccc--------------cCcCCCCCEEEEEEE
Confidence 356666766 455 45444445788999887 3211 236789999988764
No 66
>2kcm_A Cold shock domain family protein; nucleic acid binding protein, beta barrel, structural genomi 2, protein structure initiative; NMR {Shewanella oneidensis}
Probab=32.28 E-value=49 Score=22.93 Aligned_cols=30 Identities=7% Similarity=-0.151 Sum_probs=17.9
Q ss_pred eEecCCCeEEEEEEeccccCCCCeEEEEEecC
Q psy4846 219 VVFHSFDPVTVQLSLDRSNVQHEKLVLRLVRP 250 (279)
Q Consensus 219 ~~~~lGD~V~VkV~~~~vd~~~~~I~~~lv~~ 250 (279)
..++.||+|...+. .-+.-.+-..+.++++
T Consensus 39 ~~l~~G~~V~F~~~--~g~kG~~A~~V~~~~~ 68 (74)
T 2kcm_A 39 GKLVKGSMVHFDPT--PTPKGLAAKAISLPLE 68 (74)
T ss_dssp TTCCTTSEEEEEEE--CTTTSCEEEEEECCSC
T ss_pred CCCCCCCEEEEEEE--ECCCCceeEEEEEcCc
Confidence 46899999999885 3222223344444444
No 67
>2jpp_A Translational repressor; RNA recognition, protein/RNA, CSRA, RSMA, shine-dalgarno; NMR {Pseudomonas fluorescens}
Probab=29.96 E-value=75 Score=21.97 Aligned_cols=30 Identities=10% Similarity=0.161 Sum_probs=24.6
Q ss_pred CeEecCCCeEEEEEEeccccCCCCeEEEEEecCC
Q psy4846 218 SVVFHSFDPVTVQLSLDRSNVQHEKLVLRLVRPV 251 (279)
Q Consensus 218 ~~~~~lGD~V~VkV~~~~vd~~~~~I~~~lv~~~ 251 (279)
+..+.+||.|+|+|. +++ .+++++.+--|.
T Consensus 9 GEsI~IGd~I~ItVl--~v~--g~~VrLGI~APk 38 (70)
T 2jpp_A 9 GESINIGDDITITIL--GVS--GQQVRIGINAPK 38 (70)
T ss_dssp TCEEEETTTEEEEEE--EEE--TTEEEEEEECCT
T ss_pred CCeEEECCCEEEEEE--EEe--CCEEEEEEECCC
Confidence 667899999999987 665 678999987774
No 68
>2bti_A Carbon storage regulator homolog; RMSA, CSRA, RNA binding protein; 2.0A {Yersinia enterocolitica} PDB: 1y00_A
Probab=26.96 E-value=88 Score=21.12 Aligned_cols=30 Identities=17% Similarity=0.132 Sum_probs=24.5
Q ss_pred CeEecCCCeEEEEEEeccccCCCCeEEEEEecCC
Q psy4846 218 SVVFHSFDPVTVQLSLDRSNVQHEKLVLRLVRPV 251 (279)
Q Consensus 218 ~~~~~lGD~V~VkV~~~~vd~~~~~I~~~lv~~~ 251 (279)
+..+.+||.|+|+|. .++ .+++++.+--|.
T Consensus 11 GE~I~Igd~I~I~Vl--~i~--g~~VrlGI~AP~ 40 (63)
T 2bti_A 11 GETLMIGDEVTVTVL--GVK--GNQVRIGVNAPK 40 (63)
T ss_dssp TCEEEETTTEEEEEE--EEE--TTEEEEEEEECT
T ss_pred CCeEEeCCCEEEEEE--EEe--CCEEEEEEECCC
Confidence 668899999999987 665 678999887764
No 69
>3kq0_A Alpha-1-acid glycoprotein 1; plasma protein, polymorphism, acute phase protein, secreted, pyrrolidone carboxylic acid, lipocalin; 1.80A {Homo sapiens} PDB: 3apu_A* 3apv_A* 3apw_A* 3apx_A*
Probab=26.66 E-value=42 Score=26.93 Aligned_cols=30 Identities=10% Similarity=0.060 Sum_probs=26.8
Q ss_pred eeEEeeCCCCCccCHHHHHHHHHHcCCccc
Q psy4846 3 NAMLRRHPVPPPANFEPLLHAARRQGFELS 32 (279)
Q Consensus 3 ~al~R~H~~P~~~~~~~l~~~~~~~g~~~~ 32 (279)
..||.+-|..+++.+++|.++++.+|++.+
T Consensus 124 l~LysRtp~v~~e~le~F~~~a~~~G~~~~ 153 (192)
T 3kq0_A 124 LSVYADKPETTKEQLGEFYEALDCLRIPKS 153 (192)
T ss_dssp EEEEESSSCCCTTTTHHHHHHHHHHTCCGG
T ss_pred EEEEeCCCCCCHHHHHHHHHHHHHCCCCHH
Confidence 358999999999999999999999999754
No 70
>2nn6_G Exosome complex exonuclease RRP40; RNA, exosome, PM/SCL, phosphorolytic, hydrolase/transferase complex; 3.35A {Homo sapiens} SCOP: b.40.4.5 b.84.4.2 d.51.1.1
Probab=24.29 E-value=78 Score=27.88 Aligned_cols=67 Identities=10% Similarity=-0.015 Sum_probs=46.0
Q ss_pred CCcceEEEEEeCeEEEEecCcceeEEEEcccCCCCCceeeecCCceEeecCeEecCCCeEEEEEEeccccCCCCeEEEEE
Q psy4846 168 DEDGYVLYVRKNALQILIPKYGLEGTLFLRCDSPSVSWTYNEKEQSQSCGSVVFHSFDPVTVQLSLDRSNVQHEKLVLRL 247 (279)
Q Consensus 168 ~~~g~V~~V~~~Gi~V~Lp~~giEG~V~l~~~~~~d~~~~~~~~~~l~~~~~~~~lGD~V~VkV~~~~vd~~~~~I~~~l 247 (279)
.|-|.|+.+....+.|.|-. ...+.++..+ .++.. ++ -...|++||-|..+|. +++. ...+.|+.
T Consensus 130 iVIG~Vt~v~~~~~~VdI~s-~~~a~L~~~~-f~Gat-----k~-----~r~~f~~GDlV~ArV~--s~~~-~~~~eLsc 194 (289)
T 2nn6_G 130 HVIGIVTAKSGDIFKVDVGG-SEPASLSYLS-FEGAT-----KR-----NRPNVQVGDLIYGQFV--VANK-DMEPEMVC 194 (289)
T ss_dssp EEEEEEEEEETTEEEEECSS-SSCCCEESCS-SSCCS-----SC-----SSSSSCTTCEEEEEEE--ECCT-TSCCEEEC
T ss_pred EEEEEEEEEeCcEEEEEECC-CceeEEehhh-cCcch-----hh-----hhhhcCCCCEEEEEEE--EcCC-CCceEEEe
Confidence 46789999999999999875 4567788765 32110 00 1346999999999987 6653 34566766
Q ss_pred ec
Q psy4846 248 VR 249 (279)
Q Consensus 248 v~ 249 (279)
+.
T Consensus 195 ~~ 196 (289)
T 2nn6_G 195 ID 196 (289)
T ss_dssp SB
T ss_pred cc
Confidence 43
No 71
>2kgf_A Capsid protein P27; retrovirus capsid protein, N-terminal core domain (SCOP), viral protein; NMR {Mason-pfizer monkey virus}
Probab=23.98 E-value=42 Score=26.48 Aligned_cols=26 Identities=27% Similarity=0.118 Sum_probs=23.8
Q ss_pred EeeCCCCCccCHHHHHHHHHHcCCcc
Q psy4846 6 LRRHPVPPPANFEPLLHAARRQGFEL 31 (279)
Q Consensus 6 ~R~H~~P~~~~~~~l~~~~~~~g~~~ 31 (279)
.|.|.+.+.+.+.+|++.++.+|..-
T Consensus 13 ~~~~~pl~~K~iKeLk~Av~~YGp~A 38 (140)
T 2kgf_A 13 WRHHNGFDFAVIKELKTAASQYGATA 38 (140)
T ss_dssp EEEECCCCHHHHHHHHHHHHHTCTTS
T ss_pred cccccCCCHHHHHHHHHHHHHhCCCC
Confidence 58999999999999999999999754
No 72
>2ytv_A Cold shock domain-containing protein E1; cell-free protein synthesis, beta-barrel, translational REGU RNA chaperone, RNA/DNA binding, QB fold; NMR {Homo sapiens}
Probab=23.34 E-value=44 Score=23.45 Aligned_cols=46 Identities=11% Similarity=0.005 Sum_probs=28.0
Q ss_pred cceEEEEEeCeE-EEEecCc-ceeEEEEcccCCCCCceeeecCCceEeecCeEecCCCeEEEEEE
Q psy4846 170 DGYVLYVRKNAL-QILIPKY-GLEGTLFLRCDSPSVSWTYNEKEQSQSCGSVVFHSFDPVTVQLS 232 (279)
Q Consensus 170 ~g~V~~V~~~Gi-~V~Lp~~-giEG~V~l~~~~~~d~~~~~~~~~~l~~~~~~~~lGD~V~VkV~ 232 (279)
.|+|..+. .|+ ||.-++- +-+-+||++. +. . +..++.||+|...+.
T Consensus 10 ~G~V~~~~-KGfGFI~~ddg~g~DvFvH~s~-i~--------------~-g~~l~~G~~V~F~v~ 57 (79)
T 2ytv_A 10 RATVECVK-DQFGFINYEVGDSKKLFFHVKE-VQ--------------D-GIELQAGDEVEFSVI 57 (79)
T ss_dssp CEEEEECC-SSEEEESCCCSSSSSEEEETTT-CC--------------S-SCCCCTTCEEECBCE
T ss_pred cEEEEEec-ccceeEeCCCCCCCcEEEEhHH-cC--------------C-CCcCCCCCEEEEEEE
Confidence 55565664 454 3333332 2678888876 31 1 246889999998874
No 73
>3pnw_C Tudor domain-containing protein 3; FAB, structural genomics consortium, antibody, SGC, protein immune system complex; 2.05A {Homo sapiens}
Probab=22.28 E-value=80 Score=21.88 Aligned_cols=32 Identities=13% Similarity=0.054 Sum_probs=25.8
Q ss_pred cCCcceEEEEEeC--eEEEEecCcceeEEEEccc
Q psy4846 167 QDEDGYVLYVRKN--ALQILIPKYGLEGTLFLRC 198 (279)
Q Consensus 167 ~~~~g~V~~V~~~--Gi~V~Lp~~giEG~V~l~~ 198 (279)
+...|.|+++... .+.|..-+||-...|.+++
T Consensus 33 ~wYRA~I~~i~~~~~~~~V~fvDYGN~e~V~~~~ 66 (77)
T 3pnw_C 33 KFYRAEVEALHSSGMTAVVKFIDYGNYEEVLLSN 66 (77)
T ss_dssp EEEEEEEEEECTTSSEEEEEETTTCCEEEEEGGG
T ss_pred CEEEEEEEEEeCCCCEEEEEEEcCCCeEEEeHHH
Confidence 4567888899754 4778999999999999887
No 74
>1fd9_A Protein (macrophage infectivity potentiator prote; FKBP domain, long alpha helix, dimerisation VIA helical INTE isomerase; 2.41A {Legionella pneumophila} SCOP: d.26.1.1 PDB: 2uz5_A 2vcd_A*
Probab=21.85 E-value=3.3e+02 Score=22.43 Aligned_cols=23 Identities=22% Similarity=0.290 Sum_probs=17.2
Q ss_pred ccCccccccchhhhccccccccc
Q psy4846 256 SVSSAGEQGEEKMEEGETRSLYC 278 (279)
Q Consensus 256 ~~~~~~~~~~~~~~~~~~~~~~~ 278 (279)
.+..+++++-..|..|+++.++|
T Consensus 157 ~vI~G~eeaL~gMk~Gek~~v~I 179 (213)
T 1fd9_A 157 QVIPGWTEALQLMPAGSTWEIYV 179 (213)
T ss_dssp GSCHHHHHHHTTCCTTCEEEEEE
T ss_pred chhhHHHHHHcCCCCCCEEEEEE
Confidence 44557788888888888877765
No 75
>1vpz_A Carbon storage regulator homolog; CSRA-like fold, structural genomics, joint center for struct genomics, JCSG; HET: MSE; 2.05A {Pseudomonas aeruginosa} SCOP: b.151.1.1
Probab=20.98 E-value=1.1e+02 Score=21.29 Aligned_cols=30 Identities=17% Similarity=0.139 Sum_probs=24.3
Q ss_pred CeEecCCCeEEEEEEeccccCCCCeEEEEEecCC
Q psy4846 218 SVVFHSFDPVTVQLSLDRSNVQHEKLVLRLVRPV 251 (279)
Q Consensus 218 ~~~~~lGD~V~VkV~~~~vd~~~~~I~~~lv~~~ 251 (279)
+..+.+||.|+|+|. .++ .+++++.+--|.
T Consensus 21 GEsI~IGddI~ItVl--~i~--g~qVrLGI~APk 50 (73)
T 1vpz_A 21 GETLMVGDDVTVTVL--GVK--GNQVRIGVNAPK 50 (73)
T ss_dssp TCEEEETTTEEEEEE--EEE--TTEEEEEEEEET
T ss_pred CCEEEeCCCEEEEEE--EEe--CCEEEEEEECCC
Confidence 678999999999987 665 678998887664
No 76
>1xki_A VON ebner'S gland protein; beta barrel, ligand binding protein, transport protein; 1.80A {Homo sapiens} SCOP: b.60.1.1 PDB: 3eyc_A
Probab=20.75 E-value=83 Score=24.24 Aligned_cols=29 Identities=21% Similarity=0.311 Sum_probs=24.9
Q ss_pred eEEeeCCCCCccCHHHHHHHHHHcCCccc
Q psy4846 4 AMLRRHPVPPPANFEPLLHAARRQGFELS 32 (279)
Q Consensus 4 al~R~H~~P~~~~~~~l~~~~~~~g~~~~ 32 (279)
-||=+.+.++++.+++|.++++.+|++.+
T Consensus 110 ~llsR~~~~~~e~~~~f~~~~~~~G~~~~ 138 (162)
T 1xki_A 110 KLVGRDPKNNLEALEDFEKAAGARGLSTE 138 (162)
T ss_dssp EEEESSSSCCCCCHHHHHHHHHHTTCTTS
T ss_pred EEEcCCCCCCHHHHHHHHHHHHHcCCCHH
Confidence 46777788899999999999999998754
Done!