Query psy4847
Match_columns 396
No_of_seqs 322 out of 1403
Neff 6.5
Searched_HMMs 46136
Date Fri Aug 16 19:13:38 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy4847.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/4847hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PRK11573 hypothetical protein; 100.0 2.7E-32 5.9E-37 278.8 18.7 200 2-239 153-354 (413)
2 TIGR03520 GldE gliding motilit 100.0 1.6E-31 3.4E-36 273.0 19.0 195 2-237 156-351 (408)
3 COG1253 TlyC Hemolysins and re 100.0 1.2E-30 2.7E-35 268.1 18.7 191 3-233 172-364 (429)
4 PRK15094 magnesium/cobalt effl 100.0 7.1E-30 1.5E-34 250.1 19.8 197 4-239 33-232 (292)
5 COG4535 CorC Putative Mg2+ and 100.0 1.7E-30 3.7E-35 240.7 10.6 167 4-190 33-201 (293)
6 COG4536 CorB Putative Mg2+ and 100.0 2.6E-29 5.7E-34 246.1 13.0 194 2-232 164-358 (423)
7 KOG2118|consensus 99.8 1.1E-20 2.3E-25 196.9 10.5 170 5-188 168-338 (498)
8 TIGR00400 mgtE Mg2+ transporte 99.6 5.2E-15 1.1E-19 153.3 16.6 158 2-177 89-252 (449)
9 TIGR01302 IMP_dehydrog inosine 99.6 5.4E-14 1.2E-18 145.8 15.7 149 3-176 45-200 (450)
10 COG2524 Predicted transcriptio 99.5 2.1E-13 4.5E-18 128.8 10.2 126 35-177 164-291 (294)
11 COG3448 CBS-domain-containing 99.5 8.5E-13 1.8E-17 126.8 13.6 156 2-178 202-373 (382)
12 COG4109 Predicted transcriptio 99.4 7.1E-13 1.5E-17 129.9 11.4 155 5-177 146-306 (432)
13 COG3620 Predicted transcriptio 99.4 4.3E-12 9.2E-17 112.2 11.2 157 1-177 17-184 (187)
14 PRK05567 inosine 5'-monophosph 99.4 1.3E-11 2.8E-16 129.3 16.6 149 3-177 52-205 (486)
15 cd04641 CBS_pair_28 The CBS do 99.4 7.9E-12 1.7E-16 104.8 12.1 110 54-174 2-119 (120)
16 cd04623 CBS_pair_10 The CBS do 99.3 1.1E-11 2.4E-16 101.6 11.8 106 54-174 2-112 (113)
17 cd04626 CBS_pair_13 The CBS do 99.3 9.7E-12 2.1E-16 102.3 10.9 106 54-174 2-110 (111)
18 cd04605 CBS_pair_MET2_assoc Th 99.3 1.6E-11 3.4E-16 100.8 11.6 107 54-174 3-109 (110)
19 KOG2118|consensus 99.3 7.7E-14 1.7E-18 145.7 -3.1 347 32-379 57-449 (498)
20 cd04603 CBS_pair_KefB_assoc Th 99.3 2.2E-11 4.7E-16 101.0 11.9 107 54-174 2-110 (111)
21 cd04596 CBS_pair_DRTGG_assoc T 99.3 2.3E-11 4.9E-16 100.0 11.8 106 53-174 2-107 (108)
22 cd04624 CBS_pair_11 The CBS do 99.3 2.6E-11 5.6E-16 99.8 11.5 107 55-175 3-112 (112)
23 cd04600 CBS_pair_HPP_assoc Thi 99.3 3.2E-11 7E-16 101.0 11.7 107 54-174 3-123 (124)
24 cd04630 CBS_pair_17 The CBS do 99.3 3.9E-11 8.5E-16 99.5 12.1 107 54-174 2-113 (114)
25 cd04642 CBS_pair_29 The CBS do 99.3 3.2E-11 6.8E-16 102.2 11.5 110 54-174 2-125 (126)
26 cd04593 CBS_pair_EriC_assoc_ba 99.3 3.3E-11 7.1E-16 100.0 11.2 107 55-175 3-115 (115)
27 cd04590 CBS_pair_CorC_HlyC_ass 99.3 3.8E-11 8.2E-16 98.7 10.8 108 54-175 2-111 (111)
28 cd04618 CBS_pair_5 The CBS dom 99.3 5.5E-11 1.2E-15 97.4 11.4 95 54-174 2-97 (98)
29 PRK11543 gutQ D-arabinose 5-ph 99.3 2.7E-11 5.8E-16 119.8 11.1 120 42-175 196-318 (321)
30 cd04631 CBS_pair_18 The CBS do 99.3 5.5E-11 1.2E-15 99.7 11.4 108 54-174 2-124 (125)
31 cd04588 CBS_pair_CAP-ED_DUF294 99.3 9.1E-11 2E-15 96.2 12.2 106 54-174 2-109 (110)
32 PRK10892 D-arabinose 5-phospha 99.3 3.6E-11 7.9E-16 119.3 11.6 120 41-175 200-323 (326)
33 COG2239 MgtE Mg/Co/Ni transpor 99.2 7.1E-11 1.5E-15 121.9 13.8 156 4-177 92-253 (451)
34 cd04619 CBS_pair_6 The CBS dom 99.2 1E-10 2.3E-15 97.2 12.1 106 55-174 3-113 (114)
35 cd04611 CBS_pair_PAS_GGDEF_DUF 99.2 1.3E-10 2.8E-15 95.2 12.4 106 54-174 2-110 (111)
36 cd04599 CBS_pair_GGDEF_assoc2 99.2 9.3E-11 2E-15 95.2 11.4 102 55-174 3-104 (105)
37 cd04803 CBS_pair_15 The CBS do 99.2 9.5E-11 2.1E-15 97.9 11.7 107 54-174 2-121 (122)
38 cd04613 CBS_pair_SpoIVFB_EriC_ 99.2 7.1E-11 1.5E-15 97.0 10.7 107 54-174 2-113 (114)
39 cd04612 CBS_pair_SpoIVFB_EriC_ 99.2 1.1E-10 2.4E-15 95.5 11.7 108 55-174 3-110 (111)
40 cd04607 CBS_pair_NTP_transfera 99.2 1.4E-10 3E-15 95.9 11.8 105 55-173 4-111 (113)
41 cd04636 CBS_pair_23 The CBS do 99.2 8.1E-11 1.8E-15 100.4 10.6 109 54-174 2-131 (132)
42 cd04621 CBS_pair_8 The CBS dom 99.2 9.9E-11 2.2E-15 101.3 11.2 107 54-175 2-135 (135)
43 cd04610 CBS_pair_ParBc_assoc T 99.2 2.2E-10 4.8E-15 93.3 12.6 104 54-174 3-106 (107)
44 cd04601 CBS_pair_IMPDH This cd 99.2 1.9E-10 4E-15 94.0 12.1 106 54-174 3-109 (110)
45 cd04643 CBS_pair_30 The CBS do 99.2 1.1E-10 2.4E-15 96.4 10.6 105 54-174 2-115 (116)
46 cd04801 CBS_pair_M50_like This 99.2 7.5E-11 1.6E-15 97.7 9.3 109 54-174 2-113 (114)
47 cd04639 CBS_pair_26 The CBS do 99.2 1.3E-10 2.9E-15 95.4 10.6 107 54-174 2-110 (111)
48 PRK07807 inosine 5-monophospha 99.2 1.4E-10 3.1E-15 120.9 13.3 120 40-177 86-205 (479)
49 cd04635 CBS_pair_22 The CBS do 99.2 1.7E-10 3.6E-15 96.4 11.2 107 54-174 2-121 (122)
50 cd04627 CBS_pair_14 The CBS do 99.2 1.9E-10 4.1E-15 96.8 11.7 110 54-173 2-121 (123)
51 cd04800 CBS_pair_CAP-ED_DUF294 99.2 2.2E-10 4.8E-15 94.1 11.8 105 54-174 2-110 (111)
52 cd04615 CBS_pair_2 The CBS dom 99.2 2.3E-10 5E-15 94.2 11.6 106 55-174 3-112 (113)
53 cd04606 CBS_pair_Mg_transporte 99.2 1.9E-10 4.1E-15 94.6 11.0 103 58-176 2-109 (109)
54 cd04604 CBS_pair_KpsF_GutQ_ass 99.2 2.1E-10 4.5E-15 94.3 11.1 107 54-174 3-113 (114)
55 cd04583 CBS_pair_ABC_OpuCA_ass 99.2 3.3E-10 7.1E-15 92.4 12.0 106 54-174 3-108 (109)
56 cd04582 CBS_pair_ABC_OpuCA_ass 99.2 4E-10 8.7E-15 91.7 12.1 103 55-174 3-105 (106)
57 cd04586 CBS_pair_BON_assoc Thi 99.2 1.4E-10 2.9E-15 99.4 9.7 106 54-174 3-134 (135)
58 cd04595 CBS_pair_DHH_polyA_Pol 99.2 3.1E-10 6.8E-15 93.2 11.2 105 54-174 3-109 (110)
59 cd04614 CBS_pair_1 The CBS dom 99.2 3.5E-10 7.5E-15 92.0 11.3 94 54-174 2-95 (96)
60 cd04585 CBS_pair_ACT_assoc2 Th 99.2 3.7E-10 8E-15 93.6 11.6 108 55-174 3-121 (122)
61 cd04602 CBS_pair_IMPDH_2 This 99.2 3.7E-10 8E-15 93.8 11.5 107 54-174 3-113 (114)
62 cd04617 CBS_pair_4 The CBS dom 99.2 3.2E-10 7E-15 94.8 10.8 108 55-174 3-117 (118)
63 PRK01862 putative voltage-gate 99.1 2.4E-10 5.2E-15 122.0 11.9 122 40-177 444-571 (574)
64 cd02205 CBS_pair The CBS domai 99.1 5.6E-10 1.2E-14 90.0 11.4 110 54-174 2-112 (113)
65 cd04629 CBS_pair_16 The CBS do 99.1 2.1E-10 4.5E-15 94.5 9.0 106 54-174 2-113 (114)
66 cd04608 CBS_pair_PALP_assoc Th 99.1 1.9E-10 4E-15 98.0 8.9 110 54-176 3-124 (124)
67 cd04584 CBS_pair_ACT_assoc Thi 99.1 4.7E-10 1E-14 93.3 11.2 106 54-174 2-120 (121)
68 cd04589 CBS_pair_CAP-ED_DUF294 99.1 5.9E-10 1.3E-14 91.7 11.6 104 55-174 3-110 (111)
69 cd04638 CBS_pair_25 The CBS do 99.1 7.9E-10 1.7E-14 90.3 12.2 104 54-174 2-105 (106)
70 cd04622 CBS_pair_9 The CBS dom 99.1 7.7E-10 1.7E-14 90.9 12.0 106 54-174 2-112 (113)
71 cd04587 CBS_pair_CAP-ED_DUF294 99.1 6.4E-10 1.4E-14 91.4 11.5 106 54-174 2-112 (113)
72 cd04632 CBS_pair_19 The CBS do 99.1 5.7E-10 1.2E-14 94.4 11.4 109 54-174 2-127 (128)
73 cd04594 CBS_pair_EriC_assoc_ar 99.1 6.1E-10 1.3E-14 91.1 11.1 100 56-174 4-103 (104)
74 cd04609 CBS_pair_PALP_assoc2 T 99.1 6E-10 1.3E-14 90.8 11.0 103 55-174 3-109 (110)
75 TIGR01137 cysta_beta cystathio 99.1 3.5E-10 7.5E-15 117.2 11.7 122 34-176 328-453 (454)
76 cd04640 CBS_pair_27 The CBS do 99.1 5E-10 1.1E-14 94.9 10.6 106 55-174 3-125 (126)
77 cd04591 CBS_pair_EriC_assoc_eu 99.1 4.9E-10 1.1E-14 92.5 9.3 101 53-174 2-104 (105)
78 cd04620 CBS_pair_7 The CBS dom 99.1 1.1E-09 2.4E-14 90.6 11.4 105 55-174 3-114 (115)
79 PLN02274 inosine-5'-monophosph 99.1 1.6E-09 3.6E-14 113.8 15.3 128 29-177 91-222 (505)
80 cd04637 CBS_pair_24 The CBS do 99.1 8.7E-10 1.9E-14 92.2 10.6 109 54-174 2-121 (122)
81 cd04802 CBS_pair_3 The CBS dom 99.1 1.3E-09 2.9E-14 89.5 11.4 105 54-174 2-111 (112)
82 PRK07107 inosine 5-monophospha 99.1 8.1E-10 1.8E-14 116.0 12.4 110 56-176 108-219 (502)
83 cd04633 CBS_pair_20 The CBS do 99.1 1E-09 2.2E-14 91.4 10.2 104 55-174 3-120 (121)
84 cd04634 CBS_pair_21 The CBS do 99.0 1.5E-09 3.2E-14 94.5 10.6 108 54-174 2-142 (143)
85 PTZ00314 inosine-5'-monophosph 99.0 1.7E-09 3.6E-14 113.6 12.4 118 44-177 97-218 (495)
86 TIGR01303 IMP_DH_rel_1 IMP deh 99.0 2.6E-09 5.6E-14 111.5 13.6 120 40-178 85-204 (475)
87 cd04625 CBS_pair_12 The CBS do 99.0 2.8E-09 6E-14 87.6 10.5 105 54-174 2-111 (112)
88 cd04598 CBS_pair_GGDEF_assoc T 99.0 2.7E-09 6E-14 88.6 10.3 105 55-174 3-118 (119)
89 TIGR00393 kpsF KpsF/GutQ famil 99.0 2.9E-09 6.3E-14 102.4 10.4 111 43-168 155-268 (268)
90 COG0517 FOG: CBS domain [Gener 98.9 1.5E-08 3.3E-13 83.6 11.4 111 46-173 2-117 (117)
91 COG2905 Predicted signal-trans 98.6 2.1E-07 4.5E-12 96.8 8.8 125 36-177 142-270 (610)
92 PRK14869 putative manganese-de 98.5 3.8E-07 8.2E-12 97.0 10.7 123 42-177 67-304 (546)
93 cd04592 CBS_pair_EriC_assoc_eu 98.5 7E-07 1.5E-11 77.5 9.3 93 54-149 2-115 (133)
94 PF00571 CBS: CBS domain CBS d 98.4 4E-07 8.8E-12 66.6 5.2 53 45-101 1-53 (57)
95 PF00571 CBS: CBS domain CBS d 98.4 1.1E-06 2.4E-11 64.3 7.2 53 116-177 4-56 (57)
96 KOG1764|consensus 98.3 3.5E-06 7.6E-11 85.9 11.0 126 42-178 225-360 (381)
97 PF00027 cNMP_binding: Cyclic 98.2 6.9E-06 1.5E-10 64.5 8.4 80 257-369 5-88 (91)
98 PRK11753 DNA-binding transcrip 98.2 9.2E-06 2E-10 74.9 9.4 97 240-368 9-109 (211)
99 cd00038 CAP_ED effector domain 98.1 2.3E-05 5E-10 63.2 10.0 96 241-369 7-106 (115)
100 PRK10070 glycine betaine trans 98.1 2.6E-05 5.6E-10 80.1 12.0 120 43-178 274-394 (400)
101 smart00100 cNMP Cyclic nucleot 98.1 2.1E-05 4.5E-10 63.7 8.5 100 240-370 6-109 (120)
102 COG0664 Crp cAMP-binding prote 98.0 3.4E-05 7.4E-10 70.0 9.5 93 244-369 16-112 (214)
103 PRK09392 ftrB transcriptional 98.0 4.7E-05 1E-09 71.7 10.2 96 240-368 19-117 (236)
104 KOG2550|consensus 97.9 3.3E-05 7.1E-10 78.0 8.1 128 27-175 97-226 (503)
105 TIGR01186 proV glycine betaine 97.8 0.00018 3.9E-09 73.1 12.2 105 57-177 254-358 (363)
106 TIGR03697 NtcA_cyano global ni 97.7 0.00012 2.5E-09 66.4 8.3 78 260-368 2-83 (193)
107 PRK10402 DNA-binding transcrip 97.7 0.00011 2.4E-09 69.1 8.2 87 248-367 28-118 (226)
108 PRK11161 fumarate/nitrate redu 97.7 0.00025 5.4E-09 66.7 9.6 95 240-368 25-124 (235)
109 KOG0474|consensus 97.6 5.1E-05 1.1E-09 80.1 4.8 126 40-177 579-748 (762)
110 cd04603 CBS_pair_KefB_assoc Th 97.6 0.00012 2.5E-09 60.4 5.9 74 23-101 37-110 (111)
111 PLN03192 Voltage-dependent pot 97.6 0.0003 6.5E-09 78.6 10.1 97 240-369 386-485 (823)
112 cd04617 CBS_pair_4 The CBS dom 97.5 0.00019 4E-09 59.7 6.1 61 40-101 55-117 (118)
113 cd04801 CBS_pair_M50_like This 97.5 0.00016 3.6E-09 59.4 5.7 76 23-101 38-113 (114)
114 PLN02868 acyl-CoA thioesterase 97.5 0.00058 1.3E-08 70.4 10.0 108 240-383 20-130 (413)
115 cd04604 CBS_pair_KpsF_GutQ_ass 97.5 0.00039 8.4E-09 56.7 6.8 75 23-101 38-113 (114)
116 TIGR00400 mgtE Mg2+ transporte 97.4 5.5E-05 1.2E-09 78.8 2.0 113 41-176 193-305 (449)
117 cd04619 CBS_pair_6 The CBS dom 97.4 0.00028 6E-09 58.3 5.7 75 23-101 37-113 (114)
118 cd04597 CBS_pair_DRTGG_assoc2 97.4 0.00036 7.9E-09 58.3 6.4 72 24-100 32-111 (113)
119 PRK13918 CRP/FNR family transc 97.4 0.00043 9.3E-09 63.4 7.3 74 255-362 10-89 (202)
120 cd04607 CBS_pair_NTP_transfera 97.4 0.00044 9.5E-09 56.7 6.1 55 42-100 57-111 (113)
121 PRK09391 fixK transcriptional 97.3 0.00087 1.9E-08 63.3 8.4 80 252-367 39-122 (230)
122 cd04585 CBS_pair_ACT_assoc2 Th 97.2 0.00058 1.3E-08 56.1 5.4 57 41-101 65-121 (122)
123 cd04618 CBS_pair_5 The CBS dom 97.2 0.00075 1.6E-08 54.9 5.9 46 55-101 52-97 (98)
124 cd04587 CBS_pair_CAP-ED_DUF294 97.2 0.00062 1.3E-08 55.5 5.3 75 23-101 36-112 (113)
125 cd04610 CBS_pair_ParBc_assoc T 97.2 0.00075 1.6E-08 54.4 5.6 56 42-101 51-106 (107)
126 PRK07107 inosine 5-monophospha 97.2 0.00057 1.2E-08 72.2 6.1 62 40-103 158-219 (502)
127 cd04582 CBS_pair_ABC_OpuCA_ass 97.1 0.0012 2.7E-08 53.1 6.5 69 23-101 37-105 (106)
128 cd04640 CBS_pair_27 The CBS do 97.1 0.00056 1.2E-08 57.6 4.6 61 40-101 61-125 (126)
129 smart00116 CBS Domain in cysta 97.1 0.0014 3.1E-08 44.2 5.7 47 121-176 2-48 (49)
130 cd04623 CBS_pair_10 The CBS do 97.1 0.001 2.2E-08 54.0 5.8 55 42-101 58-112 (113)
131 cd04625 CBS_pair_12 The CBS do 97.1 0.00096 2.1E-08 54.4 5.6 56 41-101 56-111 (112)
132 cd04627 CBS_pair_14 The CBS do 97.1 0.001 2.3E-08 55.5 6.0 51 46-100 71-121 (123)
133 PRK05567 inosine 5'-monophosph 97.1 0.0017 3.6E-08 68.5 8.7 58 42-102 146-203 (486)
134 cd04613 CBS_pair_SpoIVFB_EriC_ 97.1 0.0011 2.3E-08 53.9 5.7 75 24-101 38-113 (114)
135 cd04600 CBS_pair_HPP_assoc Thi 97.1 0.00099 2.1E-08 55.3 5.6 57 41-101 67-123 (124)
136 cd04626 CBS_pair_13 The CBS do 97.1 0.0013 2.9E-08 53.5 6.1 73 23-100 37-109 (111)
137 cd04596 CBS_pair_DRTGG_assoc T 97.1 0.0011 2.3E-08 54.0 5.5 57 41-101 51-107 (108)
138 cd04615 CBS_pair_2 The CBS dom 97.0 0.0013 2.8E-08 53.7 5.7 74 23-101 37-112 (113)
139 cd04621 CBS_pair_8 The CBS dom 97.0 0.0013 2.7E-08 56.7 5.9 55 42-101 80-134 (135)
140 cd04597 CBS_pair_DRTGG_assoc2 97.0 0.0016 3.4E-08 54.4 6.3 53 113-174 60-112 (113)
141 cd04636 CBS_pair_23 The CBS do 97.0 0.0013 2.7E-08 55.8 5.7 53 44-101 79-131 (132)
142 cd04620 CBS_pair_7 The CBS dom 97.0 0.0015 3.2E-08 53.6 5.9 75 23-101 37-114 (115)
143 PRK14869 putative manganese-de 97.0 0.00028 6.1E-09 75.1 1.9 58 41-101 244-301 (546)
144 cd04631 CBS_pair_18 The CBS do 97.0 0.0013 2.9E-08 54.6 5.4 56 42-101 69-124 (125)
145 PRK10892 D-arabinose 5-phospha 97.0 0.0013 2.7E-08 65.4 6.1 74 24-102 249-323 (326)
146 cd04599 CBS_pair_GGDEF_assoc2 97.0 0.0017 3.7E-08 52.1 5.6 56 41-101 49-104 (105)
147 cd04630 CBS_pair_17 The CBS do 97.0 0.0017 3.7E-08 53.4 5.7 57 40-101 57-113 (114)
148 cd04601 CBS_pair_IMPDH This cd 97.0 0.0018 3.9E-08 52.3 5.8 56 42-101 53-109 (110)
149 COG2524 Predicted transcriptio 96.9 0.0023 5E-08 61.5 7.1 59 109-180 173-231 (294)
150 cd04622 CBS_pair_9 The CBS dom 96.9 0.0018 4E-08 52.7 5.8 75 23-101 36-112 (113)
151 cd04584 CBS_pair_ACT_assoc Thi 96.9 0.0018 3.9E-08 53.3 5.5 57 40-101 64-120 (121)
152 KOG0475|consensus 96.9 0.0044 9.4E-08 65.9 9.4 119 44-176 544-694 (696)
153 cd04803 CBS_pair_15 The CBS do 96.9 0.0021 4.6E-08 53.1 5.8 57 41-101 65-121 (122)
154 PLN02274 inosine-5'-monophosph 96.9 0.0015 3.2E-08 69.2 5.8 73 24-102 148-220 (505)
155 cd04589 CBS_pair_CAP-ED_DUF294 96.9 0.0023 5E-08 52.1 5.8 56 41-101 55-110 (111)
156 cd04633 CBS_pair_20 The CBS do 96.9 0.0017 3.7E-08 53.6 5.0 57 40-101 64-120 (121)
157 cd04635 CBS_pair_22 The CBS do 96.8 0.0021 4.5E-08 53.2 5.4 57 41-101 65-121 (122)
158 COG0517 FOG: CBS domain [Gener 96.8 0.0047 1E-07 50.4 7.4 54 44-100 63-117 (117)
159 cd04583 CBS_pair_ABC_OpuCA_ass 96.8 0.0025 5.4E-08 51.4 5.7 56 42-101 53-108 (109)
160 cd04594 CBS_pair_EriC_assoc_ar 96.8 0.0031 6.8E-08 51.0 6.2 54 43-101 50-103 (104)
161 cd04595 CBS_pair_DHH_polyA_Pol 96.8 0.003 6.5E-08 51.3 6.1 73 23-101 37-109 (110)
162 cd04611 CBS_pair_PAS_GGDEF_DUF 96.8 0.0028 6E-08 51.3 5.9 57 41-101 54-110 (111)
163 cd04586 CBS_pair_BON_assoc Thi 96.8 0.0018 3.9E-08 55.0 4.9 56 41-101 79-134 (135)
164 cd04614 CBS_pair_1 The CBS dom 96.8 0.0035 7.6E-08 50.5 6.3 49 119-176 1-49 (96)
165 PRK11543 gutQ D-arabinose 5-ph 96.8 0.0026 5.6E-08 62.9 6.6 75 23-101 243-317 (321)
166 cd04629 CBS_pair_16 The CBS do 96.8 0.0023 4.9E-08 52.2 5.0 56 41-101 58-113 (114)
167 cd04802 CBS_pair_3 The CBS dom 96.8 0.0031 6.8E-08 51.3 5.8 56 41-101 56-111 (112)
168 cd04612 CBS_pair_SpoIVFB_EriC_ 96.8 0.0037 8E-08 50.6 6.2 54 44-101 57-110 (111)
169 cd04606 CBS_pair_Mg_transporte 96.8 0.0029 6.3E-08 51.5 5.5 56 42-101 52-107 (109)
170 cd04800 CBS_pair_CAP-ED_DUF294 96.7 0.003 6.6E-08 51.3 5.5 55 42-101 56-110 (111)
171 cd04639 CBS_pair_26 The CBS do 96.7 0.0028 6.1E-08 51.5 5.2 75 22-101 36-110 (111)
172 cd04602 CBS_pair_IMPDH_2 This 96.7 0.0026 5.7E-08 52.3 5.1 58 42-101 56-113 (114)
173 cd04641 CBS_pair_28 The CBS do 96.7 0.0054 1.2E-07 50.9 6.9 49 120-177 2-50 (120)
174 cd04593 CBS_pair_EriC_assoc_ba 96.7 0.004 8.7E-08 51.1 6.0 57 42-101 57-114 (115)
175 KOG1764|consensus 96.7 0.011 2.3E-07 60.6 10.2 146 26-181 133-290 (381)
176 PTZ00314 inosine-5'-monophosph 96.6 0.0029 6.2E-08 66.9 5.8 60 41-102 157-216 (495)
177 cd04592 CBS_pair_EriC_assoc_eu 96.6 0.0063 1.4E-07 52.6 7.0 49 120-177 2-50 (133)
178 cd04624 CBS_pair_11 The CBS do 96.6 0.0073 1.6E-07 49.1 6.6 74 23-101 37-111 (112)
179 COG3448 CBS-domain-containing 96.5 0.0044 9.5E-08 60.7 5.9 62 36-101 308-369 (382)
180 cd04637 CBS_pair_24 The CBS do 96.5 0.0046 9.9E-08 51.2 5.1 56 42-101 66-121 (122)
181 cd04605 CBS_pair_MET2_assoc Th 96.5 0.0089 1.9E-07 48.4 6.7 54 43-100 55-108 (110)
182 cd04643 CBS_pair_30 The CBS do 96.5 0.0095 2.1E-07 48.6 6.9 49 120-177 2-50 (116)
183 cd04608 CBS_pair_PALP_assoc Th 96.4 0.014 3E-07 49.3 7.8 50 119-177 2-51 (124)
184 cd04642 CBS_pair_29 The CBS do 96.4 0.0074 1.6E-07 50.6 5.9 51 47-101 75-125 (126)
185 TIGR03415 ABC_choXWV_ATP choli 96.4 0.0097 2.1E-07 60.9 7.7 109 40-177 271-380 (382)
186 cd04588 CBS_pair_CAP-ED_DUF294 96.4 0.0074 1.6E-07 48.8 5.6 55 43-101 55-109 (110)
187 smart00116 CBS Domain in cysta 96.4 0.0078 1.7E-07 40.4 4.9 45 55-101 2-46 (49)
188 cd04632 CBS_pair_19 The CBS do 96.3 0.013 2.9E-07 48.9 7.0 49 120-177 2-50 (128)
189 cd04634 CBS_pair_21 The CBS do 96.3 0.0079 1.7E-07 52.0 5.5 56 41-101 87-142 (143)
190 cd04591 CBS_pair_EriC_assoc_eu 96.3 0.01 2.2E-07 48.6 5.8 49 48-101 56-104 (105)
191 TIGR01303 IMP_DH_rel_1 IMP deh 96.2 0.0065 1.4E-07 63.9 5.7 57 42-102 145-201 (475)
192 PRK07807 inosine 5-monophospha 96.2 0.0067 1.5E-07 63.9 5.7 57 42-102 147-203 (479)
193 COG2905 Predicted signal-trans 96.1 0.0068 1.5E-07 63.9 4.9 75 21-102 191-268 (610)
194 cd02205 CBS_pair The CBS domai 96.0 0.028 6.1E-07 44.5 7.1 49 120-177 2-50 (113)
195 TIGR00393 kpsF KpsF/GutQ famil 96.0 0.01 2.3E-07 56.9 5.3 51 41-95 218-268 (268)
196 KOG0498|consensus 96.0 0.012 2.6E-07 64.5 6.1 86 257-373 448-536 (727)
197 KOG0614|consensus 95.9 0.0087 1.9E-07 62.7 4.6 90 255-378 181-270 (732)
198 COG4175 ProV ABC-type proline/ 95.9 0.018 3.9E-07 57.4 6.4 121 32-177 263-383 (386)
199 cd04638 CBS_pair_25 The CBS do 95.9 0.018 3.9E-07 46.4 5.5 55 42-101 51-105 (106)
200 cd04590 CBS_pair_CorC_HlyC_ass 95.9 0.033 7.1E-07 45.1 7.0 49 120-177 2-51 (111)
201 cd04609 CBS_pair_PALP_assoc2 T 95.7 0.029 6.3E-07 45.0 6.2 48 120-177 2-49 (110)
202 TIGR01302 IMP_dehydrog inosine 95.7 0.016 3.5E-07 60.6 5.8 59 41-102 141-199 (450)
203 PRK01862 putative voltage-gate 95.7 0.015 3.2E-07 62.5 5.5 57 42-101 511-568 (574)
204 cd04598 CBS_pair_GGDEF_assoc T 95.7 0.027 5.9E-07 46.2 5.8 48 120-177 2-50 (119)
205 PRK15094 magnesium/cobalt effl 95.6 0.036 7.8E-07 54.7 7.4 91 43-139 133-229 (292)
206 TIGR01137 cysta_beta cystathio 95.5 0.039 8.4E-07 57.3 7.4 55 114-177 338-392 (454)
207 KOG1113|consensus 95.2 0.046 9.9E-07 54.8 6.6 65 242-307 136-200 (368)
208 COG3620 Predicted transcriptio 94.8 0.05 1.1E-06 49.0 5.2 57 109-178 66-122 (187)
209 TIGR03520 GldE gliding motilit 94.8 0.053 1.1E-06 56.0 5.9 93 42-139 254-350 (408)
210 PRK11832 putative DNA-binding 92.9 0.8 1.7E-05 43.1 9.6 94 242-368 13-107 (207)
211 COG2239 MgtE Mg/Co/Ni transpor 92.8 0.1 2.3E-06 54.5 3.9 59 40-102 193-251 (451)
212 TIGR01186 proV glycine betaine 91.0 0.49 1.1E-05 48.2 6.4 54 43-101 302-355 (363)
213 KOG1113|consensus 90.4 0.44 9.5E-06 47.9 5.1 76 259-367 271-346 (368)
214 KOG2550|consensus 90.1 0.31 6.7E-06 50.0 3.8 70 24-101 156-225 (503)
215 COG4109 Predicted transcriptio 88.6 0.66 1.4E-05 46.8 4.9 58 40-101 246-303 (432)
216 KOG0614|consensus 87.6 1.1 2.4E-05 47.5 6.0 67 240-306 284-355 (732)
217 PRK11573 hypothetical protein; 85.2 2.5 5.4E-05 43.8 7.1 62 107-177 186-247 (413)
218 PRK10070 glycine betaine trans 85.2 1.9 4.1E-05 44.5 6.2 56 42-102 336-391 (400)
219 PF04831 Popeye: Popeye protei 84.9 4.1 8.8E-05 36.5 7.3 100 240-368 16-117 (153)
220 COG1253 TlyC Hemolysins and re 80.9 3.9 8.5E-05 42.5 6.6 65 107-180 205-269 (429)
221 COG1125 OpuBA ABC-type proline 77.8 22 0.00048 35.0 10.1 130 20-175 160-308 (309)
222 KOG0501|consensus 74.2 2.9 6.3E-05 44.9 3.3 76 260-367 580-655 (971)
223 COG4536 CorB Putative Mg2+ and 68.4 5.8 0.00013 40.6 3.8 94 67-178 168-261 (423)
224 KOG2968|consensus 59.5 7.4 0.00016 43.9 2.9 70 260-363 517-591 (1158)
225 PF07883 Cupin_2: Cupin domain 57.0 14 0.00031 27.2 3.4 33 268-300 17-50 (71)
226 PF05899 Cupin_3: Protein of u 56.7 16 0.00034 28.3 3.6 26 269-294 25-51 (74)
227 PRK09943 DNA-binding transcrip 53.5 15 0.00032 33.4 3.5 38 267-304 126-163 (185)
228 TIGR03415 ABC_choXWV_ATP choli 50.3 21 0.00045 36.7 4.4 44 54-101 334-377 (382)
229 COG1125 OpuBA ABC-type proline 48.8 23 0.0005 34.8 4.1 60 40-101 246-307 (309)
230 COG4535 CorC Putative Mg2+ and 48.7 59 0.0013 31.6 6.7 91 43-139 133-229 (293)
231 COG2216 KdpB High-affinity K+ 41.9 35 0.00075 36.7 4.4 35 64-101 415-449 (681)
232 TIGR03214 ura-cupin putative a 40.8 25 0.00055 34.0 3.1 33 270-302 81-113 (260)
233 PF06719 AraC_N: AraC-type tra 38.8 32 0.0007 30.4 3.2 29 271-299 25-53 (155)
234 KOG0500|consensus 37.0 1.4E+02 0.0031 31.8 7.9 85 257-368 336-421 (536)
235 KOG0499|consensus 32.6 1.5E+02 0.0032 32.5 7.3 53 256-308 555-609 (815)
236 COG4175 ProV ABC-type proline/ 31.7 55 0.0012 33.3 3.8 44 55-101 337-380 (386)
237 KOG0474|consensus 30.3 65 0.0014 35.4 4.2 53 45-101 692-744 (762)
238 PRK11171 hypothetical protein; 30.0 56 0.0012 31.7 3.5 42 263-304 199-240 (266)
239 COG0662 {ManC} Mannose-6-phosp 29.3 60 0.0013 27.7 3.2 30 269-298 57-86 (127)
240 PF07981 Plasmod_MYXSPDY: Plas 27.7 35 0.00076 19.1 0.9 9 341-349 3-11 (17)
241 PF11699 CENP-C_C: Mif2/CENP-C 27.3 78 0.0017 25.5 3.4 25 269-293 33-57 (85)
242 PRK11171 hypothetical protein; 25.4 66 0.0014 31.2 3.1 34 269-302 83-116 (266)
243 PRK13290 ectC L-ectoine syntha 25.0 64 0.0014 27.8 2.6 29 271-299 57-87 (125)
244 COG3450 Predicted enzyme of th 22.9 88 0.0019 26.8 3.0 31 264-294 58-89 (116)
245 PHA00728 hypothetical protein 21.9 35 0.00076 29.4 0.4 55 26-85 34-88 (151)
246 KOG0476|consensus 21.6 79 0.0017 35.5 3.0 58 40-100 585-643 (931)
No 1
>PRK11573 hypothetical protein; Provisional
Probab=100.00 E-value=2.7e-32 Score=278.83 Aligned_cols=200 Identities=17% Similarity=0.325 Sum_probs=166.3
Q ss_pred CCCHHHHHHHHHccccccccccCCCCHHHHHHHHHHhcccccccccccccCCCEEEEeCCCChhHHHHHHHHHcCCcEEE
Q psy4847 2 CVHPQGLRSFIRVRDHDVTTEFNDLEKDEVNIISGALELRRKIVGDVMTKLEDVYMLSYDAILDFETVSEIMKSGYSRIP 81 (396)
Q Consensus 2 ~~~~~Elk~ll~~~~~~~~~e~~~l~~~E~~~i~~alel~~~tV~dIMtp~~dv~~l~~d~~l~~e~i~~i~~~g~sriP 81 (396)
.+|++||+.+++.+ .+ .++++|.+||.++|+|++++|+||||||.++++++.++++. ++++.+.++||||+|
T Consensus 153 ~~s~eEl~~lv~~~-----~~--~l~~~e~~mi~~vl~l~~~~v~eiMtPr~~i~~l~~~~~~~-e~~~~~~~~~~SR~P 224 (413)
T PRK11573 153 ALSKEELRTIVHES-----RS--QISRRNQDMLLSVLDLEKVTVDDIMVPRNEIVGIDINDDWK-SILRQLTHSPHGRIV 224 (413)
T ss_pred CCCHHHHHHHHHHH-----hh--hcCHHHHHHHHHHhccCCCChhhcCCccceEEEEECCCCHH-HHHHHHHhCCCceEE
Confidence 36899999999985 22 59999999999999999999999999999999999999999 999999999999999
Q ss_pred EEeCCCCcEEEEEEhhhhcccCCc-cccchhhhhhhhcCCceEEcCCCCHHHHHHHHHhcCCceEEEEEEeCCCCCCCCC
Q psy4847 82 VYEDRRTNIVTMFYIKDLALVDPD-DNTPLKTLCQFYQNSCYFVFEDTTLDVLLKQFKEGIKGHMAFVHRVNNEGEGDPF 160 (396)
Q Consensus 82 V~~~~~~~IVGiL~vkDLl~~~~~-~~~~l~~v~~~~~~~v~~V~~dt~L~~~L~~f~~~~~~h~avV~~~~~~~~~De~ 160 (396)
||+++.++|+|+|++|||+..... ...+..++.++ .+++.+||+++++.++|+.|+++ +.|||+|+ |||
T Consensus 225 Vy~~~~D~IiGiv~~kDll~~~~~~~~~~~~~l~~~-~r~~~~Vpe~~~l~~lL~~~~~~-~~~~AiVv--------DEy 294 (413)
T PRK11573 225 LYRDSLDDAISMLRVREAYRLMTEKKEFTKENMLRA-ADEIYFVPEGTPLSTQLVKFQRN-KKKVGLVV--------DEY 294 (413)
T ss_pred EEcCCCCceEEEEEHHHHHHHhhccCcCCHHHHHhh-ccCCeEeCCCCcHHHHHHHHHhc-CCeEEEEE--------ecC
Confidence 999888999999999999753221 22234445444 37899999999999999999995 99999999 999
Q ss_pred CceeeeecHHHHHHHHHhcccccccccccccccccccccCCCCCCccccchhccccccccccCchhhHHHHH-Hhhcccc
Q psy4847 161 YETVGLITLEDVIEELIQAEIMDETDVWTDNQHKTKRHKQSSHRGQDFTLFAEKSEAQRIHISPQLNLATFQ-FLSSNFY 239 (396)
Q Consensus 161 g~~vGIVTleDIiEeli~~eI~DE~D~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~is~q~~la~~~-~Ls~~~~ 239 (396)
|+++||||+|||+|+|+ |||.||+|...+.. +.+.+++.|.+++.+.+..++ .|....+
T Consensus 295 G~~~GiVTleDilEeiv-Gei~de~d~~~~~~-------------------i~~~~~~~~~v~G~~~l~d~~~~l~~~l~ 354 (413)
T PRK11573 295 GDIQGLVTVEDILEEIV-GDFTTSMSPTLAEE-------------------VTPQNDGSVIIDGTANVREINKAFNWHLP 354 (413)
T ss_pred CCeEEEeeHHHHHHHHh-CCCCcccCcccccc-------------------eEEecCCEEEEEeeeEHHHHHHHhCCCCC
Confidence 99999999999999999 89999987421110 223345678888888888765 3444443
No 2
>TIGR03520 GldE gliding motility-associated protein GldE. Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldC is a protein linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. GldE was discovered because of its adjacency to GldD in F. johnsonii. Overexpression of GldE partially supresses the effects of a GldB point mutant suggesting that GldB and GldE interact. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Not all Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility and in fact some do not appear to express the gliding phenotype.
Probab=99.98 E-value=1.6e-31 Score=273.01 Aligned_cols=195 Identities=32% Similarity=0.478 Sum_probs=163.3
Q ss_pred CCCHHHHHHHHHccccccccccCCCCHHHHHHHHHHhcccccccccccccCCCEEEEeCCCChhHHHHHHHHHcCCcEEE
Q psy4847 2 CVHPQGLRSFIRVRDHDVTTEFNDLEKDEVNIISGALELRRKIVGDVMTKLEDVYMLSYDAILDFETVSEIMKSGYSRIP 81 (396)
Q Consensus 2 ~~~~~Elk~ll~~~~~~~~~e~~~l~~~E~~~i~~alel~~~tV~dIMtp~~dv~~l~~d~~l~~e~i~~i~~~g~sriP 81 (396)
.+|++||+.+++.+ .+.| +.++|.+||.++|+|++++|+|||||+.++++++.++++. ++++.+.++||||+|
T Consensus 156 ~~t~eEl~~lv~~~-----~~~g-~~~~E~~~i~~vl~l~~~~v~diMtpr~~v~~l~~~~~~~-e~~~~~~~~~~sR~P 228 (408)
T TIGR03520 156 NISVDQLSQALELT-----DEED-TTKEEQKILQGIVSFGNTDTKQVMRPRLDIFALDIETSFS-EIIPKIIENGYSRIP 228 (408)
T ss_pred CCCHHHHHHHHHhH-----hhcC-CChHHHHHHHHHhccCCCEeeeeCCchHhEEEEECCCCHH-HHHHHHHhCCCCEEE
Confidence 36899999999984 3434 7899999999999999999999999999999999999999 999999999999999
Q ss_pred EEeCCCCcEEEEEEhhhhcccCCccccchhhhhhhhcCCceEEcCCCCHHHHHHHHHhcCCceEEEEEEeCCCCCCCCCC
Q psy4847 82 VYEDRRTNIVTMFYIKDLALVDPDDNTPLKTLCQFYQNSCYFVFEDTTLDVLLKQFKEGIKGHMAFVHRVNNEGEGDPFY 161 (396)
Q Consensus 82 V~~~~~~~IVGiL~vkDLl~~~~~~~~~l~~v~~~~~~~v~~V~~dt~L~~~L~~f~~~~~~h~avV~~~~~~~~~De~g 161 (396)
||+++.++|+|+|+.|||+.....+..++.+++ +++.+|++++++.++|+.|+++ +.|+|+|+ |+||
T Consensus 229 V~~~~~d~ivGiv~~kDll~~~~~~~~~l~~~~----~~~~~Vpe~~~l~~ll~~m~~~-~~~~aiVv--------DE~G 295 (408)
T TIGR03520 229 VYKETIDNITGVLYIKDLLPHLNKKNFDWQSLL----REPYFVPENKKLDDLLRDFQEK-KNHLAIVV--------DEYG 295 (408)
T ss_pred EEcCCCCceEEEEEHHHHHhHhccCCCCHHHHc----CCCeEeCCCCcHHHHHHHHHhc-CceEEEEE--------cCCC
Confidence 999877899999999999854332333455554 6788999999999999999995 89999999 9999
Q ss_pred ceeeeecHHHHHHHHHhcccccccccccccccccccccCCCCCCccccchhccccccccccCchhhHHHHH-Hhhcc
Q psy4847 162 ETVGLITLEDVIEELIQAEIMDETDVWTDNQHKTKRHKQSSHRGQDFTLFAEKSEAQRIHISPQLNLATFQ-FLSSN 237 (396)
Q Consensus 162 ~~vGIVTleDIiEeli~~eI~DE~D~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~is~q~~la~~~-~Ls~~ 237 (396)
+++||||++||+|+|+ |||.||+|...+ .+.+.+++++.+++.+++..+. .|..+
T Consensus 296 ~~~GiVT~eDileeiv-gei~de~d~~~~--------------------~i~~~~~~~~~v~G~~~l~~l~~~l~~~ 351 (408)
T TIGR03520 296 GTSGLVTLEDIIEEIV-GDISDEFDDEDL--------------------IYSKIDDNNYVFEGKTSLKDFYKILKLE 351 (408)
T ss_pred CEEEEEEHHHHHHHHh-CCCCCcCCcCcc--------------------ceEEeCCCeEEEEeccCHHHHHHHhCCC
Confidence 9999999999999999 899999884211 1223445567888888777654 34433
No 3
>COG1253 TlyC Hemolysins and related proteins containing CBS domains [General function prediction only]
Probab=99.97 E-value=1.2e-30 Score=268.06 Aligned_cols=191 Identities=31% Similarity=0.463 Sum_probs=160.3
Q ss_pred CCHHHHHHHHHccccccccccCCCCHHHHHHHHHHhcccccccccccccCCCEEEEeCCCChhHHHHHHHHHcCCcEEEE
Q psy4847 3 VHPQGLRSFIRVRDHDVTTEFNDLEKDEVNIISGALELRRKIVGDVMTKLEDVYMLSYDAILDFETVSEIMKSGYSRIPV 82 (396)
Q Consensus 3 ~~~~Elk~ll~~~~~~~~~e~~~l~~~E~~~i~~alel~~~tV~dIMtp~~dv~~l~~d~~l~~e~i~~i~~~g~sriPV 82 (396)
.+.++++ ++..+ .+.|.++++|+.||+++|+|++++|++|||||.++++++.+.++. ++++.+.++||||+||
T Consensus 172 ~~~~~~~-~~~~~-----~~~g~~~~~E~~mi~~v~~l~~~~v~eiMtPR~~i~~l~~~~~~~-~~~~~~~~~~~SR~PV 244 (429)
T COG1253 172 STEEELE-LVSES-----AEEGVLEEEEREMINNVLDLDDRTVREIMTPRTDIVALDLTDTVE-ELIELILESGHSRIPV 244 (429)
T ss_pred ccHHHHH-HHHhH-----HhcCCcCHHHHHHHHHHhccCCcEeeeEeeecccEEEEcCCCCHH-HHHHHHHhCCCCeeeE
Confidence 4456666 77764 678999999999999999999999999999999999999999999 9999999999999999
Q ss_pred EeCCCCcEEEEEEhhhhcccCCccc--cchhhhhhhhcCCceEEcCCCCHHHHHHHHHhcCCceEEEEEEeCCCCCCCCC
Q psy4847 83 YEDRRTNIVTMFYIKDLALVDPDDN--TPLKTLCQFYQNSCYFVFEDTTLDVLLKQFKEGIKGHMAFVHRVNNEGEGDPF 160 (396)
Q Consensus 83 ~~~~~~~IVGiL~vkDLl~~~~~~~--~~l~~v~~~~~~~v~~V~~dt~L~~~L~~f~~~~~~h~avV~~~~~~~~~De~ 160 (396)
|+++.++++|++++|||+....+.. ...... .+++++||+++++.++|++|++. +.|||+|+ |||
T Consensus 245 ~~~~~D~iiGiv~~Kdll~~~~~~~~~~~~~~~----~~~~~~Vpet~~~~~lL~~~r~~-~~hmAiVv--------DEy 311 (429)
T COG1253 245 YDGDLDNIIGIVHVKDLLRALLDGQSDLDLRVL----VRPPLFVPETLSLSDLLEEFREE-RTHMAIVV--------DEY 311 (429)
T ss_pred EcCCCCcEEEEEEHHHHHHHHhcCccccchhhc----ccCCeEecCCCcHHHHHHHHHHh-CCeEEEEE--------EcC
Confidence 9988899999999999987654432 112211 25899999999999999999995 99999999 999
Q ss_pred CceeeeecHHHHHHHHHhcccccccccccccccccccccCCCCCCccccchhccccccccccCchhhHHHHHH
Q psy4847 161 YETVGLITLEDVIEELIQAEIMDETDVWTDNQHKTKRHKQSSHRGQDFTLFAEKSEAQRIHISPQLNLATFQF 233 (396)
Q Consensus 161 g~~vGIVTleDIiEeli~~eI~DE~D~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~is~q~~la~~~~ 233 (396)
|++.|+||+|||+|+|+ |||.||+|...+..- ....+++ |.+++.+.+..++-
T Consensus 312 G~~~GlVTleDIiEeIv-Gei~de~d~~~~~~~------------------~~~~~~~-~~v~G~~~l~e~~~ 364 (429)
T COG1253 312 GGVEGLVTLEDIIEEIV-GEIPDEHDEDEEEDI------------------IQRDDDG-WLVDGRVPLEELEE 364 (429)
T ss_pred CCeEEEeEHHHHHHHHh-CCCcCcccccccccc------------------eEecCCc-EEEeccccHHHHHH
Confidence 99999999999999999 899999997544220 1122333 77788888877664
No 4
>PRK15094 magnesium/cobalt efflux protein CorC; Provisional
Probab=99.97 E-value=7.1e-30 Score=250.12 Aligned_cols=197 Identities=24% Similarity=0.380 Sum_probs=165.8
Q ss_pred CHHHHHHHHHccccccccccCCCCHHHHHHHHHHhcccccccccccccCCCEEEEeCCCChhHHHHHHHHHcCCcEEEEE
Q psy4847 4 HPQGLRSFIRVRDHDVTTEFNDLEKDEVNIISGALELRRKIVGDVMTKLEDVYMLSYDAILDFETVSEIMKSGYSRIPVY 83 (396)
Q Consensus 4 ~~~Elk~ll~~~~~~~~~e~~~l~~~E~~~i~~alel~~~tV~dIMtp~~dv~~l~~d~~l~~e~i~~i~~~g~sriPV~ 83 (396)
|++||+.+++.+ .+.|.|+++|..+|.++|+|++++|++||||+.++++++.++++. ++++.+.+++|+|+|||
T Consensus 33 t~eEl~~l~~~~-----~~~g~l~~~e~~~i~~vl~l~~~~V~diMtpr~~i~~l~~~~sl~-e~~~~i~~~~~sr~PV~ 106 (292)
T PRK15094 33 NRDELLALIRDS-----EQNDLIDEDTRDMLEGVMDIADQRVRDIMIPRSQMITLKRNQTLD-ECLDVIIESAHSRFPVI 106 (292)
T ss_pred CHHHHHHHHHhH-----hhcCCCCHHHHHHHHHHhccCCCEEeEEccchHHEEEEeCCCCHH-HHHHHHHhcCCcEEEEe
Confidence 689999999985 677999999999999999999999999999999999999999999 99999999999999999
Q ss_pred eCCCCcEEEEEEhhhhcccCC--ccccchhhhhhhhcCCceEEcCCCCHHHHHHHHHhcCCceEEEEEEeCCCCCCCCCC
Q psy4847 84 EDRRTNIVTMFYIKDLALVDP--DDNTPLKTLCQFYQNSCYFVFEDTTLDVLLKQFKEGIKGHMAFVHRVNNEGEGDPFY 161 (396)
Q Consensus 84 ~~~~~~IVGiL~vkDLl~~~~--~~~~~l~~v~~~~~~~v~~V~~dt~L~~~L~~f~~~~~~h~avV~~~~~~~~~De~g 161 (396)
+++.++++|+|++|||+.... .....+.+++ +++++|++++++.++|+.|++. +.|+|+|+ |++|
T Consensus 107 ~~~~d~iiGiv~~kDll~~~~~~~~~~~l~~l~----r~~~~V~e~~~l~~~L~~m~~~-~~~~a~Vv--------De~G 173 (292)
T PRK15094 107 SEDKDHIEGILMAKDLLPFMRSDAEAFSMDKVL----RQAVVVPESKRVDRMLKEFRSQ-RYHMAIVI--------DEFG 173 (292)
T ss_pred cCCCCcEEEEEEHHHHHhHhhccCCcCCHHHHc----CCCcCcCCCCcHHHHHHHHHhc-CCEEEEEE--------eCCC
Confidence 876689999999999975322 1122355554 5677999999999999999995 89999999 9999
Q ss_pred ceeeeecHHHHHHHHHhcccccccccccccccccccccCCCCCCccccchhccccccccccCchhhHHHHH-Hhhcccc
Q psy4847 162 ETVGLITLEDVIEELIQAEIMDETDVWTDNQHKTKRHKQSSHRGQDFTLFAEKSEAQRIHISPQLNLATFQ-FLSSNFY 239 (396)
Q Consensus 162 ~~vGIVTleDIiEeli~~eI~DE~D~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~is~q~~la~~~-~Ls~~~~ 239 (396)
+++||||++||+|+|+ |+|.||+|...+. .+.+.++++|.+++.+.+..++ .|...++
T Consensus 174 ~viGiVTleDIle~iv-Gei~de~d~~~~~-------------------~i~~~~~~~~~v~G~~~l~dl~~~l~~~l~ 232 (292)
T PRK15094 174 GVSGLVTIEDILELIV-GEIEDEYDEEDDI-------------------DFRQLSRHTWTVRALASIEDFNEAFGTHFS 232 (292)
T ss_pred CEEEEeEHHHHHHHHh-CCCcccccccccc-------------------ccEEeCCCeEEEEeccCHHHHHHHhCCCCC
Confidence 9999999999999999 8999999853211 0223456678888888887765 4444443
No 5
>COG4535 CorC Putative Mg2+ and Co2+ transporter CorC [Inorganic ion transport and metabolism]
Probab=99.97 E-value=1.7e-30 Score=240.69 Aligned_cols=167 Identities=28% Similarity=0.450 Sum_probs=153.0
Q ss_pred CHHHHHHHHHccccccccccCCCCHHHHHHHHHHhcccccccccccccCCCEEEEeCCCChhHHHHHHHHHcCCcEEEEE
Q psy4847 4 HPQGLRSFIRVRDHDVTTEFNDLEKDEVNIISGALELRRKIVGDVMTKLEDVYMLSYDAILDFETVSEIMKSGYSRIPVY 83 (396)
Q Consensus 4 ~~~Elk~ll~~~~~~~~~e~~~l~~~E~~~i~~alel~~~tV~dIMtp~~dv~~l~~d~~l~~e~i~~i~~~g~sriPV~ 83 (396)
+.+||-.+||.+ +..+.++.+-+.||+|+++..+.+|+|||.||+++++|..+.+++ +.+..|.++.||||||+
T Consensus 33 nr~eLl~liRds-----e~n~LiD~dt~~mlEGvm~iadl~vrDiMIPRSQM~~l~~~~~l~-~~l~~iiesaHSRfPVi 106 (293)
T COG4535 33 NREELLELIRDS-----EQNELIDADTLDMLEGVMDIADLRVRDIMIPRSQMITLKRNQTLD-ECLDVIIESAHSRFPVI 106 (293)
T ss_pred CHHHHHHHHHHh-----hhccccChhHHHHHHHHHHHHHhhHhhhcccHHHheeccccCCHH-HHHHHHHHhccccCCcc
Confidence 578999999986 677889999999999999999999999999999999999999999 99999999999999999
Q ss_pred eCCCCcEEEEEEhhhhcccCCc--cccchhhhhhhhcCCceEEcCCCCHHHHHHHHHhcCCceEEEEEEeCCCCCCCCCC
Q psy4847 84 EDRRTNIVTMFYIKDLALVDPD--DNTPLKTLCQFYQNSCYFVFEDTTLDVLLKQFKEGIKGHMAFVHRVNNEGEGDPFY 161 (396)
Q Consensus 84 ~~~~~~IVGiL~vkDLl~~~~~--~~~~l~~v~~~~~~~v~~V~~dt~L~~~L~~f~~~~~~h~avV~~~~~~~~~De~g 161 (396)
.+++++|.|||..|||+..... ..+.++.+ .+|..+||++..++.+|+.|+.. +.|||+|+ |+||
T Consensus 107 ~edkD~v~GIL~AKDLL~~~~~~~~~F~i~~l----LRPav~VPESKrvd~lLkeFR~~-RnHMAIVi--------DEfG 173 (293)
T COG4535 107 SEDKDHVEGILLAKDLLPFMRSDAEPFDIKEL----LRPAVVVPESKRVDRLLKEFRSQ-RNHMAIVI--------DEFG 173 (293)
T ss_pred cCCchhhhhhhhHHHHHHHhcCCcccccHHHh----cccceecccchhHHHHHHHHHhh-cCceEEEE--------eccC
Confidence 9999999999999999864332 33566766 48999999999999999999995 99999999 9999
Q ss_pred ceeeeecHHHHHHHHHhcccccccccccc
Q psy4847 162 ETVGLITLEDVIEELIQAEIMDETDVWTD 190 (396)
Q Consensus 162 ~~vGIVTleDIiEeli~~eI~DE~D~~~d 190 (396)
++.|+||.|||+|.|+ |+|-||+|...+
T Consensus 174 gVsGLVTIEDiLEqIV-GdIEDE~Deee~ 201 (293)
T COG4535 174 GVSGLVTIEDILEQIV-GDIEDEYDEEED 201 (293)
T ss_pred CeeeeEEHHHHHHHHh-cccccccchhhh
Confidence 9999999999999999 899999997643
No 6
>COG4536 CorB Putative Mg2+ and Co2+ transporter CorB [Inorganic ion transport and metabolism]
Probab=99.96 E-value=2.6e-29 Score=246.12 Aligned_cols=194 Identities=25% Similarity=0.409 Sum_probs=164.5
Q ss_pred CCCHHHHHHHHHccccccccccCCCCHHHHHHHHHHhcccccccccccccCCCEEEEeCCCChhHHHHHHHHHcCCcEEE
Q psy4847 2 CVHPQGLRSFIRVRDHDVTTEFNDLEKDEVNIISGALELRRKIVGDVMTKLEDVYMLSYDAILDFETVSEIMKSGYSRIP 81 (396)
Q Consensus 2 ~~~~~Elk~ll~~~~~~~~~e~~~l~~~E~~~i~~alel~~~tV~dIMtp~~dv~~l~~d~~l~~e~i~~i~~~g~sriP 81 (396)
.++.||++.++.++ +.++...+++++|+.|+|+|.+.||.|||+||.++..++.|.+.. +.++.+..+.|+|+|
T Consensus 164 ~~s~EElR~~v~~~-----~~e~~~~~~~rdmL~gvLDLe~~tV~DIMvpR~~i~~id~d~~~e-~iv~ql~~s~HtRip 237 (423)
T COG4536 164 LSSKEELRTAVNES-----GSEGSVNKIDRDMLLGVLDLENLTVSDIMVPRNEIIGIDIDDPWE-EIVRQLLHSPHTRIP 237 (423)
T ss_pred ccCHHHHHHHHHHh-----hcccccccccHHHHhcccccccceeeeeeccccceeeecCCCCHH-HHHHHHhhCCCCcee
Confidence 57899999999997 667888888999999999999999999999999999999999999 999999999999999
Q ss_pred EEeCCCCcEEEEEEhhhhcccCCccc-cchhhhhhhhcCCceEEcCCCCHHHHHHHHHhcCCceEEEEEEeCCCCCCCCC
Q psy4847 82 VYEDRRTNIVTMFYIKDLALVDPDDN-TPLKTLCQFYQNSCYFVFEDTTLDVLLKQFKEGIKGHMAFVHRVNNEGEGDPF 160 (396)
Q Consensus 82 V~~~~~~~IVGiL~vkDLl~~~~~~~-~~l~~v~~~~~~~v~~V~~dt~L~~~L~~f~~~~~~h~avV~~~~~~~~~De~ 160 (396)
||.++.|||+|++++||++.+..+.+ ..-.++++. ..++.|||+.|++.+-|..|+++ +.|+++|+ |||
T Consensus 238 lyr~~~DnIiGvlh~r~llr~l~e~~~~~k~d~~~~-a~epyFVPe~Tpl~~QL~~F~~~-k~hialVV--------DEY 307 (423)
T COG4536 238 LYRDDLDNIIGVLHVRDLLRLLNEKNEFTKEDILRA-ADEPYFVPEGTPLSDQLVAFQRN-KKHIALVV--------DEY 307 (423)
T ss_pred eecCChhHhhhhhhHHHHHHHhhccCcccHhHHHHH-hcCCeecCCCCcHHHHHHHHHHh-cceEEEEE--------ecc
Confidence 99999999999999999986533322 333444443 26788999999999999999995 99999999 999
Q ss_pred CceeeeecHHHHHHHHHhcccccccccccccccccccccCCCCCCccccchhccccccccccCchhhHHHHH
Q psy4847 161 YETVGLITLEDVIEELIQAEIMDETDVWTDNQHKTKRHKQSSHRGQDFTLFAEKSEAQRIHISPQLNLATFQ 232 (396)
Q Consensus 161 g~~vGIVTleDIiEeli~~eI~DE~D~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~is~q~~la~~~ 232 (396)
|.+.|+||+|||+|||+ |++.||.|...+. ...+.++++.+.+..++-..+
T Consensus 308 G~i~GLVTLEDIlEEIV-Gdftde~d~~~~e--------------------v~~q~dgs~iidGs~~iRdlN 358 (423)
T COG4536 308 GDIQGLVTLEDILEEIV-GDFTDEHDTLAKE--------------------VIPQSDGSFIIDGSANVRDLN 358 (423)
T ss_pred CcEEeeeeHHHHHHHHh-ccccccCcccchh--------------------hcccCCCcEEEeCCCcHHHHH
Confidence 99999999999999999 8999998865432 122445566666666665544
No 7
>KOG2118|consensus
Probab=99.83 E-value=1.1e-20 Score=196.86 Aligned_cols=170 Identities=37% Similarity=0.506 Sum_probs=138.7
Q ss_pred HHHHHHHHHccccccccccCCCCHHHHHHHHHHhcccccccccccccCCCEEEEeCCCChhHHHHHHHHHcCCcEEEEEe
Q psy4847 5 PQGLRSFIRVRDHDVTTEFNDLEKDEVNIISGALELRRKIVGDVMTKLEDVYMLSYDAILDFETVSEIMKSGYSRIPVYE 84 (396)
Q Consensus 5 ~~Elk~ll~~~~~~~~~e~~~l~~~E~~~i~~alel~~~tV~dIMtp~~dv~~l~~d~~l~~e~i~~i~~~g~sriPV~~ 84 (396)
..+++.++..+.... .. |++..+|..+|.|++++.+++|++||||..++++++.+..++++++.++.++||||||||+
T Consensus 168 ~~~l~~lv~~~~~e~-~~-g~~~~~e~~ii~g~l~l~ek~~~evmtpi~~~f~l~~n~~l~~~~~~~i~~~g~sripv~~ 245 (498)
T KOG2118|consen 168 RASLLALVQLVGNEA-GK-GDLTYDELTIITGALELTEKLVGEVMTPIEDVFALDANTKLDRETVGEIVKHGYSRIPVYE 245 (498)
T ss_pred hHHHHHHHHHHhccc-cc-CcccchhhhHhhhhHHHHHHHHHHhccchhhheeeccccccchHHHhhHhhcCcceeeecc
Confidence 356666776653211 12 7799999999999999999999999999999999999999999999999999999999998
Q ss_pred CCCCcEEEEEEhhhhcccC-CccccchhhhhhhhcCCceEEcCCCCHHHHHHHHHhcCCceEEEEEEeCCCCCCCCCCce
Q psy4847 85 DRRTNIVTMFYIKDLALVD-PDDNTPLKTLCQFYQNSCYFVFEDTTLDVLLKQFKEGIKGHMAFVHRVNNEGEGDPFYET 163 (396)
Q Consensus 85 ~~~~~IVGiL~vkDLl~~~-~~~~~~l~~v~~~~~~~v~~V~~dt~L~~~L~~f~~~~~~h~avV~~~~~~~~~De~g~~ 163 (396)
....+.+|.+..+.++.+. .+.......+..++.++++.+++++++.+.++.|+++ +.||++|. . ....
T Consensus 246 ~~~~~~i~~~L~~~~~~~~~~~~~~~~~~v~~~~~~~l~~vp~~~~~~~~l~~~~~~-~~H~~~v~--------~-~~~~ 315 (498)
T KOG2118|consen 246 QEPKNKIGGLLVMNLLRLLQVEVPLEPLPVSESALLRLPLVPENMPLLDLLNEFQKG-KSHMAVVR--------N-GHVD 315 (498)
T ss_pred CcccchhhHHHHhhhhhhhccccccccccchhhhccccccCCCcccHHHHHHHHhhh-hceeEEEe--------c-CCcc
Confidence 7655666666666665443 1112223445555578999999999999999999997 89999997 3 5678
Q ss_pred eeeecHHHHHHHHHhcccccccccc
Q psy4847 164 VGLITLEDVIEELIQAEIMDETDVW 188 (396)
Q Consensus 164 vGIVTleDIiEeli~~eI~DE~D~~ 188 (396)
+|++|++|+ ++++ .|+.||.|..
T Consensus 316 ~~~~~l~~~-~~~~-~ev~de~d~~ 338 (498)
T KOG2118|consen 316 IFVLTLEDL-EEVV-KEVEDEEDKE 338 (498)
T ss_pred eeeEeccch-hhhc-ceeccccccc
Confidence 999999999 9998 8999999976
No 8
>TIGR00400 mgtE Mg2+ transporter (mgtE). This family of prokaryotic proteins models a class of Mg++ transporter first described in Bacillus firmus. May form a homodimer.
Probab=99.63 E-value=5.2e-15 Score=153.34 Aligned_cols=158 Identities=16% Similarity=0.216 Sum_probs=127.9
Q ss_pred CCCHHHHHHHHHccccccc-cccCCCCHHHHHHHHHHhcccccccccccccCCCEEEEeCCCChhHHHHHHHHH---cCC
Q psy4847 2 CVHPQGLRSFIRVRDHDVT-TEFNDLEKDEVNIISGALELRRKIVGDVMTKLEDVYMLSYDAILDFETVSEIMK---SGY 77 (396)
Q Consensus 2 ~~~~~Elk~ll~~~~~~~~-~e~~~l~~~E~~~i~~alel~~~tV~dIMtp~~dv~~l~~d~~l~~e~i~~i~~---~g~ 77 (396)
.++++|+..++++...... .=-+.++++|++.+.++++|.+.+|+++|++ ++.+++.+.++. ++++.+.+ ..+
T Consensus 89 ~l~~dd~~~ll~~l~~~~~~~lL~~l~~~er~~i~~ll~~~e~tvg~iMt~--~~~~v~~~~tv~-eal~~l~~~~~~~~ 165 (449)
T TIGR00400 89 EMNLDDVIDLLEEVPANVVQQLLASSTEEERKAINLLLSYSDDSAGRIMTI--EYVELKEDYTVG-KALDYIRRVAKTKE 165 (449)
T ss_pred cCChhHHHHHHHhCCHHHHHHHHHcCCHHHHHHHHHHhCCCcchHHHhCcC--ceEEECCCCcHH-HHHHHHHhcCCCcc
Confidence 4788999999998621110 0115799999999999999999999999995 489999999999 99999875 233
Q ss_pred c--EEEEEeCCCCcEEEEEEhhhhcccCCccccchhhhhhhhcCCceEEcCCCCHHHHHHHHHhcCCceEEEEEEeCCCC
Q psy4847 78 S--RIPVYEDRRTNIVTMFYIKDLALVDPDDNTPLKTLCQFYQNSCYFVFEDTTLDVLLKQFKEGIKGHMAFVHRVNNEG 155 (396)
Q Consensus 78 s--riPV~~~~~~~IVGiL~vkDLl~~~~~~~~~l~~v~~~~~~~v~~V~~dt~L~~~L~~f~~~~~~h~avV~~~~~~~ 155 (396)
+ .+||.+++ ++++|+|+.+||+...++ .+++++| .++++++++++++.++++.|+++ +.+.++|+
T Consensus 166 ~~~~v~Vvd~~-~~l~GvV~l~dLl~a~~~--~~v~~im---~~~~~~v~~~~~~~eal~~m~~~-~~~~lpVV------ 232 (449)
T TIGR00400 166 DIYTLYVTNES-KHLKGVLSIRDLILAKPE--EILSSIM---RSSVFSIVGVNDQEEVARLIQKY-DFLAVPVV------ 232 (449)
T ss_pred ceeEEEEECCC-CeEEEEEEHHHHhcCCCC--CcHHHHh---CCCCeeECCCCCHHHHHHHHHHc-CCCEEeEE------
Confidence 3 45555544 789999999999865443 3667766 46788899999999999999984 77778888
Q ss_pred CCCCCCceeeeecHHHHHHHHH
Q psy4847 156 EGDPFYETVGLITLEDVIEELI 177 (396)
Q Consensus 156 ~~De~g~~vGIVTleDIiEeli 177 (396)
|++|+++|+||.+|+++.+.
T Consensus 233 --D~~g~lvGiIt~~Dil~~l~ 252 (449)
T TIGR00400 233 --DNEGRLVGIVTVDDIIDVIQ 252 (449)
T ss_pred --cCCCeEEEEEEHHHHHHHHH
Confidence 88999999999999999987
No 9
>TIGR01302 IMP_dehydrog inosine-5'-monophosphate dehydrogenase. This model describes a rather tightly conserved cluster of IMP dehydrogenase sequences, many of which are characterized. The model excludes two related families of proteins proposed also to be IMP dehydrogenases, but without characterized members. These are related families are the subject of separate models.
Probab=99.56 E-value=5.4e-14 Score=145.83 Aligned_cols=149 Identities=19% Similarity=0.270 Sum_probs=125.1
Q ss_pred CCHHHHHHHHHccccccccccCCCCH-----HHHHHHHHHhcccccccccccccCCCEEEEeCCCChhHHHHHHHHHcCC
Q psy4847 3 VHPQGLRSFIRVRDHDVTTEFNDLEK-----DEVNIISGALELRRKIVGDVMTKLEDVYMLSYDAILDFETVSEIMKSGY 77 (396)
Q Consensus 3 ~~~~Elk~ll~~~~~~~~~e~~~l~~-----~E~~~i~~alel~~~tV~dIMtp~~dv~~l~~d~~l~~e~i~~i~~~g~ 77 (396)
+|++|+..++... ...|.|.+ +|.+++.+++.+.+ +|.+ ++++++.+.++. ++++.|.++++
T Consensus 45 vTe~ema~~ma~~-----gg~GvI~~n~~~e~q~~~V~~Vk~~~~-----~~~~--~~vtl~~~~tv~-eal~~m~~~~~ 111 (450)
T TIGR01302 45 VTESRMAIAMARE-----GGIGVIHRNMSIEEQAEQVKRVKRAEN-----GIIS--DPVTISPETTVA-DVLELMERKGI 111 (450)
T ss_pred cCHHHHHHHHHhc-----CCCceeecCCCHHHHHHHHhhhccccC-----ceec--CceEeCCCCCHH-HHHHHHHHcCC
Confidence 5899999999886 45677774 89999999987665 4654 478999999999 99999999999
Q ss_pred cEEEEEeCCC--CcEEEEEEhhhhcccCCccccchhhhhhhhcCCceEEcCCCCHHHHHHHHHhcCCceEEEEEEeCCCC
Q psy4847 78 SRIPVYEDRR--TNIVTMFYIKDLALVDPDDNTPLKTLCQFYQNSCYFVFEDTTLDVLLKQFKEGIKGHMAFVHRVNNEG 155 (396)
Q Consensus 78 sriPV~~~~~--~~IVGiL~vkDLl~~~~~~~~~l~~v~~~~~~~v~~V~~dt~L~~~L~~f~~~~~~h~avV~~~~~~~ 155 (396)
+++||++++. ++++|+|+.+||+.... ...++.++|. ..+++++++++++.++++.|++. +.+.++|+
T Consensus 112 s~lpVvd~~~~~~~lvGIVt~rDL~~~~~-~~~~V~dvm~--~~~~~~V~~~~sl~eal~~m~~~-~~~~lpVV------ 181 (450)
T TIGR01302 112 SGIPVVEDGDMTGKLVGIITKRDIRFVKD-KGKPVSEVMT--REEVITVPEGIDLEEALKVLHEH-RIEKLPVV------ 181 (450)
T ss_pred CEEEEEeCCCCCCeEEEEEEHHHHhhhhc-CCCCHHHhhC--CCCCEEECCCCcHHHHHHHHHHc-CCCeEEEE------
Confidence 9999998753 69999999999976432 2346666653 13899999999999999999995 88999998
Q ss_pred CCCCCCceeeeecHHHHHHHH
Q psy4847 156 EGDPFYETVGLITLEDVIEEL 176 (396)
Q Consensus 156 ~~De~g~~vGIVTleDIiEel 176 (396)
|++|+++|+||++||++++
T Consensus 182 --De~G~lvGiVT~~DIl~~~ 200 (450)
T TIGR01302 182 --DKNGELVGLITMKDIVKRR 200 (450)
T ss_pred --cCCCcEEEEEEhHHhhhcc
Confidence 8999999999999999986
No 10
>COG2524 Predicted transcriptional regulator, contains C-terminal CBS domains [Transcription]
Probab=99.47 E-value=2.1e-13 Score=128.81 Aligned_cols=126 Identities=19% Similarity=0.287 Sum_probs=109.4
Q ss_pred HHHhcccccccccccccCCCEEEEeCCCChhHHHHHHHHHcCCcEEEEEeCCCCcEEEEEEhhhhcccCC--ccccchhh
Q psy4847 35 SGALELRRKIVGDVMTKLEDVYMLSYDAILDFETVSEIMKSGYSRIPVYEDRRTNIVTMFYIKDLALVDP--DDNTPLKT 112 (396)
Q Consensus 35 ~~alel~~~tV~dIMtp~~dv~~l~~d~~l~~e~i~~i~~~g~sriPV~~~~~~~IVGiL~vkDLl~~~~--~~~~~l~~ 112 (396)
.++..+...+|+++|++. +.++..+.++. ++...+.+.|+...||+++ ++++|+++..|++.+-. .-+..+++
T Consensus 164 ~~m~siPk~~V~~~~s~~--~i~v~~d~tl~-eaak~f~~~~i~GaPVvd~--dk~vGiit~~dI~~aia~g~~~~kV~~ 238 (294)
T COG2524 164 SKMVSIPKEKVKNLMSKK--LITVRPDDTLR-EAAKLFYEKGIRGAPVVDD--DKIVGIITLSDIAKAIANGNLDAKVSD 238 (294)
T ss_pred eeeeecCcchhhhhccCC--ceEecCCccHH-HHHHHHHHcCccCCceecC--CceEEEEEHHHHHHHHHcCCccccHHH
Confidence 445567899999999976 89999999999 9999999999999999976 59999999999975432 23346666
Q ss_pred hhhhhcCCceEEcCCCCHHHHHHHHHhcCCceEEEEEEeCCCCCCCCCCceeeeecHHHHHHHHH
Q psy4847 113 LCQFYQNSCYFVFEDTTLDVLLKQFKEGIKGHMAFVHRVNNEGEGDPFYETVGLITLEDVIEELI 177 (396)
Q Consensus 113 v~~~~~~~v~~V~~dt~L~~~L~~f~~~~~~h~avV~~~~~~~~~De~g~~vGIVTleDIiEeli 177 (396)
+| .+.+++|.+|+.+.+|++.|..+ +....+|+ |.+|+.+||||..||+..|.
T Consensus 239 ~M---~k~vitI~eDe~i~dAir~M~~~-nVGRLlV~--------ds~gkpvGiITrTDIL~~ia 291 (294)
T COG2524 239 YM---RKNVITINEDEDIYDAIRLMNKN-NVGRLLVT--------DSNGKPVGIITRTDILTRIA 291 (294)
T ss_pred Hh---ccCCceEcCchhHHHHHHHHHhc-CcceEEEE--------ccCCcEEEEEehHHHHHHhh
Confidence 66 58999999999999999999995 77778887 88899999999999999987
No 11
>COG3448 CBS-domain-containing membrane protein [Signal transduction mechanisms]
Probab=99.46 E-value=8.5e-13 Score=126.80 Aligned_cols=156 Identities=20% Similarity=0.275 Sum_probs=130.8
Q ss_pred CCCHHHHHHHHHccccccccccCCCCHHHHHHHHHHhc-------ccccccccccccCCCEEEEeCCCChhHHHHHHHHH
Q psy4847 2 CVHPQGLRSFIRVRDHDVTTEFNDLEKDEVNIISGALE-------LRRKIVGDVMTKLEDVYMLSYDAILDFETVSEIMK 74 (396)
Q Consensus 2 ~~~~~Elk~ll~~~~~~~~~e~~~l~~~E~~~i~~ale-------l~~~tV~dIMtp~~dv~~l~~d~~l~~e~i~~i~~ 74 (396)
.++.+++...++.. +|.-+++++|...+.+-.| +.+.+..|||++ ||++++.+++++ ++...+.+
T Consensus 202 gfs~~Dld~aL~~~-----~E~lDIdrddLe~llr~~elqa~~R~~~~LtcadIMSr--dVvtv~~~ts~d-hA~~ll~~ 273 (382)
T COG3448 202 GFSSEDLDAALQRL-----GETLDIDRDDLERLLRETELQALRRRMGELTCADIMSR--DVVTVSTDTSID-HARKLLQE 273 (382)
T ss_pred CCCHHHHHHHHHhc-----CceecCCHHHHHHHHHHHHHHHHHHHhccccHHHhcCc--cceecCCcCChH-HHHHHHHH
Confidence 57888888888886 6777888887665544333 467899999996 499999999999 99999999
Q ss_pred cCCcEEEEEeCCCCcEEEEEEhhhhcccC-C--------ccccchhhhhhhhcCCceEEcCCCCHHHHHHHHHhcCCceE
Q psy4847 75 SGYSRIPVYEDRRTNIVTMFYIKDLALVD-P--------DDNTPLKTLCQFYQNSCYFVFEDTTLDVLLKQFKEGIKGHM 145 (396)
Q Consensus 75 ~g~sriPV~~~~~~~IVGiL~vkDLl~~~-~--------~~~~~l~~v~~~~~~~v~~V~~dt~L~~~L~~f~~~~~~h~ 145 (396)
+++..+||+|+. .+++|+++.+||+.-. + -.+..++.+| +.++.+|.++++..+++..|..+ ..|.
T Consensus 274 H~ikaLPV~d~~-~rl~GiVt~~dl~~~a~~~p~qrlr~~~~~~vk~im---t~~v~tv~pdtpa~~lvp~lad~-g~H~ 348 (382)
T COG3448 274 HRIKALPVLDEH-RRLVGIVTQRDLLKHARPSPFQRLRFLRPPTVKGIM---TTPVVTVRPDTPAVELVPRLADE-GLHA 348 (382)
T ss_pred cCcccccccccc-cceeeeeeHHHHhhccCcchHHHhhccCCCcccccc---cCcceeecCCCcHHHHHHHhhcC-Ccce
Confidence 999999999876 6899999999998521 1 1123567776 47999999999999999999996 8999
Q ss_pred EEEEEeCCCCCCCCCCceeeeecHHHHHHHHHh
Q psy4847 146 AFVHRVNNEGEGDPFYETVGLITLEDVIEELIQ 178 (396)
Q Consensus 146 avV~~~~~~~~~De~g~~vGIVTleDIiEeli~ 178 (396)
.+|+ |+.|+++||||..|++-++..
T Consensus 349 lpvl--------d~~g~lvGIvsQtDliaal~r 373 (382)
T COG3448 349 LPVL--------DAAGKLVGIVSQTDLIAALYR 373 (382)
T ss_pred eeEE--------cCCCcEEEEeeHHHHHHHHHH
Confidence 9999 999999999999999998873
No 12
>COG4109 Predicted transcriptional regulator containing CBS domains [Transcription]
Probab=99.43 E-value=7.1e-13 Score=129.92 Aligned_cols=155 Identities=22% Similarity=0.276 Sum_probs=129.6
Q ss_pred HHHHHHHHHcccccc-ccccCCCCHHHHHHHHHHhcc-----cccccccccccCCCEEEEeCCCChhHHHHHHHHHcCCc
Q psy4847 5 PQGLRSFIRVRDHDV-TTEFNDLEKDEVNIISGALEL-----RRKIVGDVMTKLEDVYMLSYDAILDFETVSEIMKSGYS 78 (396)
Q Consensus 5 ~~Elk~ll~~~~~~~-~~e~~~l~~~E~~~i~~alel-----~~~tV~dIMtp~~dv~~l~~d~~l~~e~i~~i~~~g~s 78 (396)
.+|...+..+.++.+ ...|..++ -.+||+.|+.- .=.+|.|||+|..+...+..++++. +..+...+.||+
T Consensus 146 s~evi~lAne~~lPvlstsYDTFT--VAtmIN~Al~n~lIKkdI~~Vedi~~P~~~~~yL~~~d~v~-d~~~l~~kt~~s 222 (432)
T COG4109 146 SDEVIKLANEKGLPVLSTSYDTFT--VATMINKALSNQLIKKDIITVEDIMTPLEDTSYLRETDTVE-DWLDLVEKTGHS 222 (432)
T ss_pred cHHHHHhhcccCCceEEeccccee--HHHHHHHHHHHhhhhhheeeHHHhccccccceeccccccHH-HHHHHHHHcCCC
Confidence 356666777766555 25555554 46888888742 2368999999999999999999999 899999999999
Q ss_pred EEEEEeCCCCcEEEEEEhhhhcccCCccccchhhhhhhhcCCceEEcCCCCHHHHHHHHHhcCCceEEEEEEeCCCCCCC
Q psy4847 79 RIPVYEDRRTNIVTMFYIKDLALVDPDDNTPLKTLCQFYQNSCYFVFEDTTLDVLLKQFKEGIKGHMAFVHRVNNEGEGD 158 (396)
Q Consensus 79 riPV~~~~~~~IVGiL~vkDLl~~~~~~~~~l~~v~~~~~~~v~~V~~dt~L~~~L~~f~~~~~~h~avV~~~~~~~~~D 158 (396)
||||++.. .+++|+++.||++..++. +++..+| .+++.+|.+.+++..+...|.-. ...|.||+ |
T Consensus 223 RfPVvn~~-~kvvGvVt~rDv~~~~~~--t~ieKVM---tknp~tv~~~tsVAsvaq~MiwE-~iem~PVv--------~ 287 (432)
T COG4109 223 RFPVVNRS-MKVVGVVTMRDVLDKKPS--TTIEKVM---TKNPITVRAKTSVASVAQMMIWE-GIEMLPVV--------D 287 (432)
T ss_pred ccceeccc-ceEEEEEEehhhhcCCCC--ccHHHHh---ccCCeeecccchHHHHHHHHHhc-cceeeeEE--------c
Confidence 99999876 689999999999876654 3667666 58889999999999999999984 89999999 8
Q ss_pred CCCceeeeecHHHHHHHHH
Q psy4847 159 PFYETVGLITLEDVIEELI 177 (396)
Q Consensus 159 e~g~~vGIVTleDIiEeli 177 (396)
++..++||||+.|+++.+-
T Consensus 288 ~n~~llGiitR~dvlk~lq 306 (432)
T COG4109 288 SNNTLLGIITRQDVLKSLQ 306 (432)
T ss_pred CCceEEEEEEHHHHHHHHH
Confidence 8999999999999999985
No 13
>COG3620 Predicted transcriptional regulator with C-terminal CBS domains [Transcription]
Probab=99.37 E-value=4.3e-12 Score=112.23 Aligned_cols=157 Identities=21% Similarity=0.261 Sum_probs=121.8
Q ss_pred CCCCHHHHHHHHHccccccc-cccCCCCHH--HHHHHHHHhcc---cccccccccccCCCEEEEeCCCChhHHHHHHHHH
Q psy4847 1 MCVHPQGLRSFIRVRDHDVT-TEFNDLEKD--EVNIISGALEL---RRKIVGDVMTKLEDVYMLSYDAILDFETVSEIMK 74 (396)
Q Consensus 1 ~~~~~~Elk~ll~~~~~~~~-~e~~~l~~~--E~~~i~~alel---~~~tV~dIMtp~~dv~~l~~d~~l~~e~i~~i~~ 74 (396)
+.+|.+||......+..-++ -|.|.+++. -.+.|-.+|+= ...+++.||+. +++.+.+++++. +++..|.+
T Consensus 17 LGitQ~dLA~~aGVSQ~~IArlE~G~vdPrlSt~k~Il~aL~e~e~~~ita~~iM~s--pvv~v~pdDsi~-~vv~lM~~ 93 (187)
T COG3620 17 LGITQKDLARRAGVSQPYIARLEAGKVDPRLSTVKRILEALEEAEKTRITAKTIMHS--PVVSVSPDDSIS-DVVNLMRD 93 (187)
T ss_pred cCCCHHHHHHHcCccHHHHHHHhcCCCCccHHHHHHHHHHHHHhhcceEeHhhhccC--CeeEECchhhHH-HHHHHHHH
Confidence 46788888887777665555 677888875 34455555543 24678999985 499999999999 99999999
Q ss_pred cCCcEEEEEeCCCCcEEEEEEhhhhcccCCc--c---ccchhhhhhhhcCCceEEcCCCCHHHHHHHHHhcCCceEEEEE
Q psy4847 75 SGYSRIPVYEDRRTNIVTMFYIKDLALVDPD--D---NTPLKTLCQFYQNSCYFVFEDTTLDVLLKQFKEGIKGHMAFVH 149 (396)
Q Consensus 75 ~g~sriPV~~~~~~~IVGiL~vkDLl~~~~~--~---~~~l~~v~~~~~~~v~~V~~dt~L~~~L~~f~~~~~~h~avV~ 149 (396)
+|||.+||+++ |++||-|+..++....-+ + ...++++| ..+.+.|.+++++..+-..+..+ +.++|+
T Consensus 94 ~g~SQlPVi~~--~k~VGsItE~~iv~~~le~~e~i~~~~vr~vM---~e~fP~Vs~~~~l~vI~~LL~~~---~AVlV~ 165 (187)
T COG3620 94 KGISQLPVIEE--DKVVGSITENDIVRALLEGMESIRSLRVREVM---GEPFPTVSPDESLNVISQLLEEH---PAVLVV 165 (187)
T ss_pred cCCccCceeeC--CeeeeeecHHHHHHHHhccccchhhhhHHHHh---cCCCCcCCCCCCHHHHHHHHhhC---CeEEEE
Confidence 99999999987 789999999999643211 2 23455665 58999999999999998888763 445555
Q ss_pred EeCCCCCCCCCCceeeeecHHHHHHHHH
Q psy4847 150 RVNNEGEGDPFYETVGLITLEDVIEELI 177 (396)
Q Consensus 150 ~~~~~~~~De~g~~vGIVTleDIiEeli 177 (396)
+.|+++||||..||+..+-
T Consensus 166 ---------e~G~~vGIITk~DI~k~~~ 184 (187)
T COG3620 166 ---------ENGKVVGIITKADIMKLLA 184 (187)
T ss_pred ---------eCCceEEEEeHHHHHHHHh
Confidence 5799999999999998875
No 14
>PRK05567 inosine 5'-monophosphate dehydrogenase; Reviewed
Probab=99.37 E-value=1.3e-11 Score=129.34 Aligned_cols=149 Identities=17% Similarity=0.200 Sum_probs=121.8
Q ss_pred CCHHHHHHHHHccccccccccCCCC-----HHHHHHHHHHhcccccccccccccCCCEEEEeCCCChhHHHHHHHHHcCC
Q psy4847 3 VHPQGLRSFIRVRDHDVTTEFNDLE-----KDEVNIISGALELRRKIVGDVMTKLEDVYMLSYDAILDFETVSEIMKSGY 77 (396)
Q Consensus 3 ~~~~Elk~ll~~~~~~~~~e~~~l~-----~~E~~~i~~alel~~~tV~dIMtp~~dv~~l~~d~~l~~e~i~~i~~~g~ 77 (396)
.|++||...+... ..-|.|. +++.+++..+.. ++++|.+ ++.+++.+.++. ++++.|.++++
T Consensus 52 vT~~ela~ava~~-----GglG~i~~~~~~e~~~~~I~~vk~-----~~dim~~--~~v~i~~~~tv~-ea~~~m~~~~~ 118 (486)
T PRK05567 52 VTEARMAIAMARE-----GGIGVIHKNMSIEEQAEEVRKVKR-----SESGVVT--DPVTVTPDTTLA-EALALMARYGI 118 (486)
T ss_pred cCHHHHHHHHHhC-----CCCCEecCCCCHHHHHHHHHHhhh-----hhhcccC--CCeEeCCCCCHH-HHHHHHHHhCC
Confidence 5788999888775 4445555 467788887755 5678874 488999999999 99999999999
Q ss_pred cEEEEEeCCCCcEEEEEEhhhhcccCCccccchhhhhhhhcCCceEEcCCCCHHHHHHHHHhcCCceEEEEEEeCCCCCC
Q psy4847 78 SRIPVYEDRRTNIVTMFYIKDLALVDPDDNTPLKTLCQFYQNSCYFVFEDTTLDVLLKQFKEGIKGHMAFVHRVNNEGEG 157 (396)
Q Consensus 78 sriPV~~~~~~~IVGiL~vkDLl~~~~~~~~~l~~v~~~~~~~v~~V~~dt~L~~~L~~f~~~~~~h~avV~~~~~~~~~ 157 (396)
+++||++++ ++++|+|+.+||..... ...++.++|. .++++++++++++.+++..|.+. +.+.++|+
T Consensus 119 ~~lpVvd~~-g~lvGiVt~~DL~~~~~-~~~~V~dim~--~~~~v~v~~~~sl~eal~~m~~~-~~~~lpVV-------- 185 (486)
T PRK05567 119 SGVPVVDEN-GKLVGIITNRDVRFETD-LSQPVSEVMT--KERLVTVPEGTTLEEALELLHEH-RIEKLPVV-------- 185 (486)
T ss_pred CEEEEEccC-CEEEEEEEHHHhhhccc-CCCcHHHHcC--CCCCEEECCCCCHHHHHHHHHHc-CCCEEEEE--------
Confidence 999999864 89999999999975432 2345666653 26889999999999999999995 78888888
Q ss_pred CCCCceeeeecHHHHHHHHH
Q psy4847 158 DPFYETVGLITLEDVIEELI 177 (396)
Q Consensus 158 De~g~~vGIVTleDIiEeli 177 (396)
|++|+++|+||.+||++.+.
T Consensus 186 De~g~lvGiIT~~DLl~~~~ 205 (486)
T PRK05567 186 DDNGRLKGLITVKDIEKAEE 205 (486)
T ss_pred cCCCcEEEEEEhHHhhhhhh
Confidence 88999999999999999874
No 15
>cd04641 CBS_pair_28 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.36 E-value=7.9e-12 Score=104.80 Aligned_cols=110 Identities=15% Similarity=0.215 Sum_probs=87.2
Q ss_pred CEEEEeCCCChhHHHHHHHHHcCCcEEEEEeCCCCcEEEEEEhhhhcccCCcc--ccchhhhhhh------hcCCceEEc
Q psy4847 54 DVYMLSYDAILDFETVSEIMKSGYSRIPVYEDRRTNIVTMFYIKDLALVDPDD--NTPLKTLCQF------YQNSCYFVF 125 (396)
Q Consensus 54 dv~~l~~d~~l~~e~i~~i~~~g~sriPV~~~~~~~IVGiL~vkDLl~~~~~~--~~~l~~v~~~------~~~~v~~V~ 125 (396)
++.+++.+.++. ++++.|.+++++++||++++ ++++|+++.+||+...... .....++.++ +..++.++.
T Consensus 2 ~~~~i~~~~~l~-~a~~~~~~~~~~~~pVv~~~-~~~~Giv~~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~ 79 (120)
T cd04641 2 NIATARPDTPLI-DVLDMLVERRVSALPIVDEN-GKVVDVYSRFDVINLAKEGAYNNLDLTVGEALERRSQDFEGVRTCS 79 (120)
T ss_pred CcEEEcCCCCHH-HHHHHHHHcCCCeeeEECCC-CeEEEEEeHHHHHHHHhcCccccccCCHHHHHhhcccCCCCCeEEc
Confidence 467899999999 99999999999999999764 8999999999997532111 1111222222 224578999
Q ss_pred CCCCHHHHHHHHHhcCCceEEEEEEeCCCCCCCCCCceeeeecHHHHHH
Q psy4847 126 EDTTLDVLLKQFKEGIKGHMAFVHRVNNEGEGDPFYETVGLITLEDVIE 174 (396)
Q Consensus 126 ~dt~L~~~L~~f~~~~~~h~avV~~~~~~~~~De~g~~vGIVTleDIiE 174 (396)
+++++.++++.|.+. +.+.++|+ |++|+++|+||..||++
T Consensus 80 ~~~~l~~~~~~m~~~-~~~~l~Vv--------d~~~~~~Givt~~di~~ 119 (120)
T cd04641 80 PDDCLRTIFDLIVKA-RVHRLVVV--------DENKRVEGIISLSDILQ 119 (120)
T ss_pred CCCcHHHHHHHHHhc-CccEEEEE--------CCCCCEEEEEEHHHhhc
Confidence 999999999999995 78888888 77789999999999975
No 16
>cd04623 CBS_pair_10 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.35 E-value=1.1e-11 Score=101.61 Aligned_cols=106 Identities=22% Similarity=0.290 Sum_probs=86.1
Q ss_pred CEEEEeCCCChhHHHHHHHHHcCCcEEEEEeCCCCcEEEEEEhhhhcccCCcc-----ccchhhhhhhhcCCceEEcCCC
Q psy4847 54 DVYMLSYDAILDFETVSEIMKSGYSRIPVYEDRRTNIVTMFYIKDLALVDPDD-----NTPLKTLCQFYQNSCYFVFEDT 128 (396)
Q Consensus 54 dv~~l~~d~~l~~e~i~~i~~~g~sriPV~~~~~~~IVGiL~vkDLl~~~~~~-----~~~l~~v~~~~~~~v~~V~~dt 128 (396)
++..++.+.++. ++++.+.+.+++++||++++ ++++|+++.+||+...... ..++.++ +.+++.+++++.
T Consensus 2 ~~~~i~~~~~~~-~~~~~~~~~~~~~~~V~~~~-~~~~Giv~~~~l~~~~~~~~~~~~~~~~~~~---~~~~~~~v~~~~ 76 (113)
T cd04623 2 DVITVRPDATVA-EAAKLMAEKNIGAVVVVDDG-GRLVGIFSERDIVRKVALRGASALDTPVSEI---MTRNVITVTPDD 76 (113)
T ss_pred CCEEECCCCcHH-HHHHHHHHcCCCeEEEECCC-CCEEEEEehHHHHHHHhhcCCCccccCHHHh---cCCCcEEECCCC
Confidence 467789999999 99999999999999999765 7899999999997432211 2244444 457889999999
Q ss_pred CHHHHHHHHHhcCCceEEEEEEeCCCCCCCCCCceeeeecHHHHHH
Q psy4847 129 TLDVLLKQFKEGIKGHMAFVHRVNNEGEGDPFYETVGLITLEDVIE 174 (396)
Q Consensus 129 ~L~~~L~~f~~~~~~h~avV~~~~~~~~~De~g~~vGIVTleDIiE 174 (396)
++.++++.|.+. +.+.++|+ ++ |+++|+||.+||++
T Consensus 77 ~~~~~l~~~~~~-~~~~~~Vv--------~~-~~~~Gvit~~di~~ 112 (113)
T cd04623 77 TVDEAMALMTER-RFRHLPVV--------DG-GKLVGIVSIGDVVK 112 (113)
T ss_pred cHHHHHHHHHHc-CCCEeEEE--------eC-CEEEEEEEHHHhhc
Confidence 999999999985 66666776 55 89999999999975
No 17
>cd04626 CBS_pair_13 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.34 E-value=9.7e-12 Score=102.35 Aligned_cols=106 Identities=19% Similarity=0.302 Sum_probs=87.3
Q ss_pred CEEEEeCCCChhHHHHHHHHHcCCcEEEEEeCCCCcEEEEEEhhhhcccCCcc---ccchhhhhhhhcCCceEEcCCCCH
Q psy4847 54 DVYMLSYDAILDFETVSEIMKSGYSRIPVYEDRRTNIVTMFYIKDLALVDPDD---NTPLKTLCQFYQNSCYFVFEDTTL 130 (396)
Q Consensus 54 dv~~l~~d~~l~~e~i~~i~~~g~sriPV~~~~~~~IVGiL~vkDLl~~~~~~---~~~l~~v~~~~~~~v~~V~~dt~L 130 (396)
++..++.+.++. ++++.|.+.+++++||++++ ++++|+++.+||+...... ..++.++ |.+++.++.+++++
T Consensus 2 ~~~~v~~~~~~~-~~~~~~~~~~~~~~~v~d~~-~~~~G~v~~~dl~~~~~~~~~~~~~v~~~---~~~~~~~v~~~~~l 76 (111)
T cd04626 2 DFPTIDEDASIR-EALHEMLKYNTNEIIVKDNE-EKLKGVVTFTDILDLDLFESFLEKKVFNI---VSQDVFYVNEEDTI 76 (111)
T ss_pred CceEECCCccHH-HHHHHHHHhCCCeEEEEcCC-CCEEEEEehHHhHHHHhhcccccCcHHHH---hcCCcEEEcCCCcH
Confidence 356789999999 99999999999999999765 7899999999997543321 1244544 45788999999999
Q ss_pred HHHHHHHHhcCCceEEEEEEeCCCCCCCCCCceeeeecHHHHHH
Q psy4847 131 DVLLKQFKEGIKGHMAFVHRVNNEGEGDPFYETVGLITLEDVIE 174 (396)
Q Consensus 131 ~~~L~~f~~~~~~h~avV~~~~~~~~~De~g~~vGIVTleDIiE 174 (396)
.+++..|.+. ..+.++|+ |+ |+++|+||..||++
T Consensus 77 ~~~~~~~~~~-~~~~~~Vv--------~~-~~~~G~it~~di~~ 110 (111)
T cd04626 77 DEALDIMREK-QIGRLPVV--------DD-NKLIGVVRTKDILD 110 (111)
T ss_pred HHHHHHHHHc-CCCeeeEe--------EC-CEEEEEEEhHHhcc
Confidence 9999999994 77877787 66 89999999999874
No 18
>cd04605 CBS_pair_MET2_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the MET2 domain. Met2 is a key enzyme in the biosynthesis of methionine. It encodes a homoserine transacetylase involved in converting homoserine to O-acetyl homoserine. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=99.33 E-value=1.6e-11 Score=100.79 Aligned_cols=107 Identities=19% Similarity=0.275 Sum_probs=88.3
Q ss_pred CEEEEeCCCChhHHHHHHHHHcCCcEEEEEeCCCCcEEEEEEhhhhcccCCccccchhhhhhhhcCCceEEcCCCCHHHH
Q psy4847 54 DVYMLSYDAILDFETVSEIMKSGYSRIPVYEDRRTNIVTMFYIKDLALVDPDDNTPLKTLCQFYQNSCYFVFEDTTLDVL 133 (396)
Q Consensus 54 dv~~l~~d~~l~~e~i~~i~~~g~sriPV~~~~~~~IVGiL~vkDLl~~~~~~~~~l~~v~~~~~~~v~~V~~dt~L~~~ 133 (396)
++.+++.+.++. ++++.+.+.+++++||++++ ++++|+++.+||+........++.+++ .+++.++.+++++.++
T Consensus 3 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~V~d~~-~~~~G~v~~~~l~~~~~~~~~~~~~~~---~~~~~~v~~~~~l~~~ 77 (110)
T cd04605 3 PVVTISEDASIK-EAAKLMIEENINHLPVVDED-GRLVGIVTSWDISKAVARDKKSVEDIM---TRNVITATPDEPIDVA 77 (110)
T ss_pred CCEEECCCCCHH-HHHHHHHhCCCceEEEECCC-CcEEEEEeHHHHHHHHhhCccCHHHhc---CCCCeEECCCCcHHHH
Confidence 467889999999 99999999999999999765 899999999999753222223455554 4788999999999999
Q ss_pred HHHHHhcCCceEEEEEEeCCCCCCCCCCceeeeecHHHHHH
Q psy4847 134 LKQFKEGIKGHMAFVHRVNNEGEGDPFYETVGLITLEDVIE 174 (396)
Q Consensus 134 L~~f~~~~~~h~avV~~~~~~~~~De~g~~vGIVTleDIiE 174 (396)
++.|.+. +.+.++|+ ++.|+++|+||..||+.
T Consensus 78 ~~~~~~~-~~~~~~Vv--------~~~~~~~G~v~~~di~~ 109 (110)
T cd04605 78 ARKMERH-NISALPVV--------DAENRVIGIITSEDISK 109 (110)
T ss_pred HHHHHHh-CCCEEeEE--------CCCCcEEEEEEHHHhhh
Confidence 9999985 66777777 77799999999999964
No 19
>KOG2118|consensus
Probab=99.32 E-value=7.7e-14 Score=145.75 Aligned_cols=347 Identities=25% Similarity=0.252 Sum_probs=260.5
Q ss_pred HHHHHHhcccccccccccccCCCEEEEeCCCChhHHHHHHHHHcCCcEEEEEe-CCCCcEEEEEEhhhhcccCCccccch
Q psy4847 32 NIISGALELRRKIVGDVMTKLEDVYMLSYDAILDFETVSEIMKSGYSRIPVYE-DRRTNIVTMFYIKDLALVDPDDNTPL 110 (396)
Q Consensus 32 ~~i~~alel~~~tV~dIMtp~~dv~~l~~d~~l~~e~i~~i~~~g~sriPV~~-~~~~~IVGiL~vkDLl~~~~~~~~~l 110 (396)
....+++....+++.+++++...++++-..+.+.|-+...+.+.++.++||+. ...++|+=-...++..+..+...+++
T Consensus 57 ~~~~a~i~~~~k~~~~lL~tlll~n~~~~e~~L~i~~~~~~~~~~a~~is~~~i~~~geIipq~vc~~~gl~vga~~~~~ 136 (498)
T KOG2118|consen 57 KLIAAAIFPVRKNLHDLLVTLLLCNSIATEAVLPFFLDAESGESGALRISVTEILIFGEIIPQSVCVKYGLAVGANLVPL 136 (498)
T ss_pred hhhhhhhcccccccceeeehheehhhhccccccceeecccccccceEecceeeeeecccccchHHHhhhcccccccceeh
Confidence 36778888889999999999887777766554665566667778999999996 34567766666666666777777888
Q ss_pred hhhhhhhcCCceEEcC--CCCHHHHHHHHHhcCCceEEEEEEeCCCCC-CCCCCceeeeecHHHHHHHHHhccccccccc
Q psy4847 111 KTLCQFYQNSCYFVFE--DTTLDVLLKQFKEGIKGHMAFVHRVNNEGE-GDPFYETVGLITLEDVIEELIQAEIMDETDV 187 (396)
Q Consensus 111 ~~v~~~~~~~v~~V~~--dt~L~~~L~~f~~~~~~h~avV~~~~~~~~-~De~g~~vGIVTleDIiEeli~~eI~DE~D~ 187 (396)
..+..|+..|+.+... |+-+...+..|.++ ..+.++|..++++++ ||......+||+.++.+.++..+++.++.+.
T Consensus 137 ~~i~~~l~~PI~~p~~~~d~~lg~~~~~~~~~-~~l~~lv~~~~~e~~~g~~~~~e~~ii~g~l~l~ek~~~evmtpi~~ 215 (498)
T KOG2118|consen 137 VRILSFLCLPIAYPFSKLDTALGLNLGEFLKR-ASLLALVQLVGNEAGKGDLTYDELTIITGALELTEKLVGEVMTPIED 215 (498)
T ss_pred HHHHHHHhhhhheehhhhhhhhccccccchhh-HHHHHHHHHHhcccccCcccchhhhHhhhhHHHHHHHHHHhccchhh
Confidence 8999999999999888 88999999999885 889999998899988 9999999999999999999999999999988
Q ss_pred ccccc--cccccccCCCCCCccccchhccccccccccCchhhHHHHHHhhcccc------cHHHHHHHHhcCCCCC----
Q psy4847 188 WTDNQ--HKTKRHKQSSHRGQDFTLFAEKSEAQRIHISPQLNLATFQFLSSNFY------VGSLLDRITQKGTSQQ---- 255 (396)
Q Consensus 188 ~~d~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~is~q~~la~~~~Ls~~~~------~e~vL~~Ll~~~~v~~---- 255 (396)
+-+-. .+..+.......+.+|+.+--...+.+.++++++..+.+.|+...+. ++..++++.+.+..-+
T Consensus 216 ~f~l~~n~~l~~~~~~~i~~~g~sripv~~~~~~~~i~~~L~~~~~~~~~~~~~~~~~~v~~~~~~~l~~vp~~~~~~~~ 295 (498)
T KOG2118|consen 216 VFALDANTKLDRETVGEIVKHGYSRIPVYEQEPKNKIGGLLVMNLLRLLQVEVPLEPLPVSESALLRLPLVPENMPLLDL 295 (498)
T ss_pred heeeccccccchHHHhhHhhcCcceeeeccCcccchhhHHHHhhhhhhhccccccccccchhhhccccccCCCcccHHHH
Confidence 76521 11111111223356677765555666778999999999999954443 5667778887775433
Q ss_pred -----CCccccccccCcccceEEEEEee------EEEEEEcCCcceeecCCccchhhhhccccc--ccC----CCCCCCC
Q psy4847 256 -----KPTFKSLKKRNKPVDYFVLILEG------RAEVVVGKENLVYEAGPFSYFGCQALTQNI--GIA----ESPTNNS 318 (396)
Q Consensus 256 -----~~~~~~LY~~g~~~d~f~LIL~G------rv~V~~G~e~~~~E~gpfs~~G~~aL~~~~--~~~----~~~~~~~ 318 (396)
..+..-+|.++.+.++|++.|+| ++++..+++++.||.|+|++.+..++.... .+. +++...+
T Consensus 296 l~~~~~~~~H~~~v~~~~~~~~~~~l~~~~~~~~ev~de~d~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~ 375 (498)
T KOG2118|consen 296 LNEFQKGKSHMAVVRNGHVDIFVLTLEDLEEVVKEVEDEEDKEEIKFETGIFTLRGIGDLDAGAVTDIDQLGERSPIKER 375 (498)
T ss_pred HHHHhhhhceeEEEecCCcceeeEeccchhhhcceeccccccccchhcccchhhcccccccccccchhhhhccccccccc
Confidence 22334589999999999999999 999999999999999999999999998632 111 1111112
Q ss_pred Cccc--ccCCCcc------ccc--c---cccCCcccccCcEEEEcCCeEEEEEeHHHHHHHHHHhhhhhccCCc
Q psy4847 319 SAAQ--AYGGSLQ------SVN--L---DSILRYTFVPDYSVRATTEMFYVKIRRSFYLAAKRATLMEKSKKSE 379 (396)
Q Consensus 319 ~~~~--~~~~s~~------~~~--~---~~~~~~~~~PD~sv~~~~d~~~~~Itr~~Y~~al~as~~~~~~~~~ 379 (396)
++.. +..++.. ... . .......|.|||+.+++.|+|+.+++|++|++|+.|+.|++.++++
T Consensus 376 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~ 449 (498)
T KOG2118|consen 376 SPRSSESLLDSRKSAFEDLAELGEIGHSVLTLESVIEPDESERILSDLQLVKITRQQYRNALLASLMESLPQSP 449 (498)
T ss_pred CCCCCccccccccccccccccccccCccceehhhhhccccchhhhccccceechhhhhhhHhhhhhhccCCCCC
Confidence 2210 0001100 000 0 0112247999999999999999999999999999999999998876
No 20
>cd04603 CBS_pair_KefB_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the KefB (Kef-type K+ transport systems) domain which is involved in inorganic ion transport and metabolism. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=99.32 E-value=2.2e-11 Score=101.00 Aligned_cols=107 Identities=19% Similarity=0.273 Sum_probs=88.4
Q ss_pred CEEEEeCCCChhHHHHHHHHHcCCcEEEEEeCCCCcEEEEEEhhhhcccCCcc--ccchhhhhhhhcCCceEEcCCCCHH
Q psy4847 54 DVYMLSYDAILDFETVSEIMKSGYSRIPVYEDRRTNIVTMFYIKDLALVDPDD--NTPLKTLCQFYQNSCYFVFEDTTLD 131 (396)
Q Consensus 54 dv~~l~~d~~l~~e~i~~i~~~g~sriPV~~~~~~~IVGiL~vkDLl~~~~~~--~~~l~~v~~~~~~~v~~V~~dt~L~ 131 (396)
++.+++.+.++. ++++.|.+.+++++||++++ ++++|+|+.+||......+ ..++.++| ..++..+.+++++.
T Consensus 2 ~~~~v~~~~~l~-~a~~~~~~~~~~~~~V~d~~-~~~~G~v~~~dl~~~~~~~~~~~~v~~~~---~~~~~~v~~~~~l~ 76 (111)
T cd04603 2 QTVSVNCENPLR-EAIKMINELGARAVVVVDEE-NKVLGQVTLSDLLEIGPNDYETLKVCEVY---IVPVPIVYCDSKVT 76 (111)
T ss_pred ceEEeCCCCcHH-HHHHHHHHcCCCEEEEEcCC-CCEEEEEEHHHHHhhccccccccChhhee---ecCCcEECCCCcHH
Confidence 356889999999 99999999999999999765 7899999999998643322 23566654 47788999999999
Q ss_pred HHHHHHHhcCCceEEEEEEeCCCCCCCCCCceeeeecHHHHHH
Q psy4847 132 VLLKQFKEGIKGHMAFVHRVNNEGEGDPFYETVGLITLEDVIE 174 (396)
Q Consensus 132 ~~L~~f~~~~~~h~avV~~~~~~~~~De~g~~vGIVTleDIiE 174 (396)
+++..|.+. +.+.++|+ |..|+++|+||..||++
T Consensus 77 ~al~~m~~~-~~~~lpVv--------d~~~~~~Giit~~di~~ 110 (111)
T cd04603 77 DLLRIFRET-EPPVVAVV--------DKEGKLVGTIYERELLR 110 (111)
T ss_pred HHHHHHHHc-CCCeEEEE--------cCCCeEEEEEEhHHhhc
Confidence 999999995 77777777 77789999999999974
No 21
>cd04596 CBS_pair_DRTGG_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with a DRTGG domain upstream. The function of the DRTGG domain, named after its conserved residues, is unknown. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=99.32 E-value=2.3e-11 Score=99.98 Aligned_cols=106 Identities=23% Similarity=0.265 Sum_probs=89.9
Q ss_pred CCEEEEeCCCChhHHHHHHHHHcCCcEEEEEeCCCCcEEEEEEhhhhcccCCccccchhhhhhhhcCCceEEcCCCCHHH
Q psy4847 53 EDVYMLSYDAILDFETVSEIMKSGYSRIPVYEDRRTNIVTMFYIKDLALVDPDDNTPLKTLCQFYQNSCYFVFEDTTLDV 132 (396)
Q Consensus 53 ~dv~~l~~d~~l~~e~i~~i~~~g~sriPV~~~~~~~IVGiL~vkDLl~~~~~~~~~l~~v~~~~~~~v~~V~~dt~L~~ 132 (396)
.++.+++.++++. ++...+.+.+++++||++++ +.++|+++.+||+...+ ..++.+++ ..++.++++++++.+
T Consensus 2 ~~~~~~~~~~~~~-~a~~~~~~~~~~~~~V~d~~-~~~~G~v~~~~l~~~~~--~~~v~~~~---~~~~~~v~~~~~l~~ 74 (108)
T cd04596 2 EDTGYLTTTDTVK-DWHELNKETGHSRFPVVDEK-NKVVGIVTSKDVAGKDP--DTTIEKVM---TKNPITVNPKTSVAS 74 (108)
T ss_pred CccEEeCCCCCHH-HHHHHHHHcCCCceeEECCC-CeEEEEecHHHHhcccc--cccHHHHh---cCCCeEECCCCCHHH
Confidence 3577899999999 99999999999999999764 78999999999986433 23566665 467889999999999
Q ss_pred HHHHHHhcCCceEEEEEEeCCCCCCCCCCceeeeecHHHHHH
Q psy4847 133 LLKQFKEGIKGHMAFVHRVNNEGEGDPFYETVGLITLEDVIE 174 (396)
Q Consensus 133 ~L~~f~~~~~~h~avV~~~~~~~~~De~g~~vGIVTleDIiE 174 (396)
+++.|.+. +.+.++|+ |+.|+++|+||..||++
T Consensus 75 ~~~~~~~~-~~~~~~Vv--------~~~~~~~G~it~~di~~ 107 (108)
T cd04596 75 VAHMMIWE-GIEMLPVV--------DDNKKLLGIISRQDVLK 107 (108)
T ss_pred HHHHHHHc-CCCeeeEE--------cCCCCEEEEEEHHHhhc
Confidence 99999985 67888887 77899999999999985
No 22
>cd04624 CBS_pair_11 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.30 E-value=2.6e-11 Score=99.81 Aligned_cols=107 Identities=17% Similarity=0.203 Sum_probs=87.3
Q ss_pred EEEEeCCCChhHHHHHHHHHcCCcEEEEEeCCCCcEEEEEEhhhhcccCCc---cccchhhhhhhhcCCceEEcCCCCHH
Q psy4847 55 VYMLSYDAILDFETVSEIMKSGYSRIPVYEDRRTNIVTMFYIKDLALVDPD---DNTPLKTLCQFYQNSCYFVFEDTTLD 131 (396)
Q Consensus 55 v~~l~~d~~l~~e~i~~i~~~g~sriPV~~~~~~~IVGiL~vkDLl~~~~~---~~~~l~~v~~~~~~~v~~V~~dt~L~ 131 (396)
+..++.+.++. ++.+.+.+.++.++||++++ ++++|+++.+|++..... ...++.+++ .++++.+.+++++.
T Consensus 3 ~~~v~~~~~~~-~~~~~~~~~~~~~~~v~d~~-~~~~G~v~~~~l~~~~~~~~~~~~~v~~~~---~~~~~~v~~~~~~~ 77 (112)
T cd04624 3 VVTVDPDTSIR-EAAKLMAEENVGSVVVVDPD-ERPIGIVTERDIVRAVAAGIDLDTPVSEIM---TRDLVTVDPDEPVA 77 (112)
T ss_pred CeEECCCCcHH-HHHHHHHHcCCCEEEEECCC-CCEEEEeeHHHHHHHHhccCCCccCHHHhc---cCCCEEECCCCcHH
Confidence 45788999999 99999999999999999876 799999999999653211 123455544 57889999999999
Q ss_pred HHHHHHHhcCCceEEEEEEeCCCCCCCCCCceeeeecHHHHHHH
Q psy4847 132 VLLKQFKEGIKGHMAFVHRVNNEGEGDPFYETVGLITLEDVIEE 175 (396)
Q Consensus 132 ~~L~~f~~~~~~h~avV~~~~~~~~~De~g~~vGIVTleDIiEe 175 (396)
++++.|.+. ..+.++|+ |+.|+++|+||..|++++
T Consensus 78 ~~~~~~~~~-~~~~~~Vv--------~~~g~~~Gilt~~dl~~~ 112 (112)
T cd04624 78 EAAKLMRKN-NIRHHLVV--------DKGGELVGVISIRDLVRE 112 (112)
T ss_pred HHHHHHHHc-CccEEEEE--------cCCCcEEEEEEHHHhccC
Confidence 999999984 66777777 777999999999999864
No 23
>cd04600 CBS_pair_HPP_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the HPP motif domain. These proteins are integral membrane proteins with four transmembrane spanning helices. The function of these proteins is uncertain, but they are thought to be transporters. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=99.29 E-value=3.2e-11 Score=101.04 Aligned_cols=107 Identities=22% Similarity=0.285 Sum_probs=88.1
Q ss_pred CEEEEeCCCChhHHHHHHHHHcCCcEEEEEeCCCCcEEEEEEhhhhcccCCcc--------------ccchhhhhhhhcC
Q psy4847 54 DVYMLSYDAILDFETVSEIMKSGYSRIPVYEDRRTNIVTMFYIKDLALVDPDD--------------NTPLKTLCQFYQN 119 (396)
Q Consensus 54 dv~~l~~d~~l~~e~i~~i~~~g~sriPV~~~~~~~IVGiL~vkDLl~~~~~~--------------~~~l~~v~~~~~~ 119 (396)
++..++.+.++. ++.+.+.+.+++++||++++ ++++|+|+.+||+...... ..++.++ +.+
T Consensus 3 ~~~~v~~~~~~~-~~~~~~~~~~~~~~~V~~~~-~~~~Giv~~~~l~~~~~~~~~~~~~~~~~~~~~~~~i~~~---~~~ 77 (124)
T cd04600 3 DVVTVTPDTSLE-EAWALLRRHRIKALPVVDGD-RRLVGIVTQRDLLRHARPDGRRPLRGRLRGRDKPETVGDI---MSP 77 (124)
T ss_pred CcEEeCCCCCHH-HHHHHHHHcCCceeeEECCC-CCEEEEEEHHHHHhhhcccccchhhhhhhcccccccHHHh---ccC
Confidence 467889999999 99999999999999999765 7899999999996432211 1234444 457
Q ss_pred CceEEcCCCCHHHHHHHHHhcCCceEEEEEEeCCCCCCCCCCceeeeecHHHHHH
Q psy4847 120 SCYFVFEDTTLDVLLKQFKEGIKGHMAFVHRVNNEGEGDPFYETVGLITLEDVIE 174 (396)
Q Consensus 120 ~v~~V~~dt~L~~~L~~f~~~~~~h~avV~~~~~~~~~De~g~~vGIVTleDIiE 174 (396)
+++++++++++.++++.|.+. +.+.++|+ |+.|+++|+||..|++.
T Consensus 78 ~~~~~~~~~~l~~~~~~~~~~-~~~~~~Vv--------~~~g~~~Gvit~~di~~ 123 (124)
T cd04600 78 PVVTVRPDTPIAELVPLLADG-GHHHVPVV--------DEDRRLVGIVTQTDLIA 123 (124)
T ss_pred CCeeeCCCCcHHHHHHHHHhc-CCCceeEE--------cCCCCEEEEEEhHHhhc
Confidence 889999999999999999985 77877787 77899999999999975
No 24
>cd04630 CBS_pair_17 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.29 E-value=3.9e-11 Score=99.49 Aligned_cols=107 Identities=18% Similarity=0.222 Sum_probs=87.2
Q ss_pred CEEEEeCCCChhHHHHHHHHHcCCcEEEEEeCCCCcEEEEEEhhhhccc--CC--c-cccchhhhhhhhcCCceEEcCCC
Q psy4847 54 DVYMLSYDAILDFETVSEIMKSGYSRIPVYEDRRTNIVTMFYIKDLALV--DP--D-DNTPLKTLCQFYQNSCYFVFEDT 128 (396)
Q Consensus 54 dv~~l~~d~~l~~e~i~~i~~~g~sriPV~~~~~~~IVGiL~vkDLl~~--~~--~-~~~~l~~v~~~~~~~v~~V~~dt 128 (396)
++..++.++++. ++++.|.+.+++.+||++++.++++|+++.+||+.. .. . ...++.+++ ..+++++++++
T Consensus 2 ~~~~v~~~~~~~-~~~~~~~~~~~~~~~V~~~~~~~~~G~v~~~dl~~~~~~~~~~~~~~~v~~~~---~~~~~~v~~~~ 77 (114)
T cd04630 2 NVVTIDGLATVA-EALQLMKEHGVSSLVVEKRRESDAYGIVTMRDILKKVVAEGRDPDRVNVYEIM---TKPLISVSPDM 77 (114)
T ss_pred CcEEECCCCcHH-HHHHHHHHcCCCEEEEEECCCCcEEEEEehHHHHHHHHhCCCCCCccCHHHHh---cCCCeeECCCC
Confidence 467899999999 999999999999999997643689999999999752 11 1 123455554 57889999999
Q ss_pred CHHHHHHHHHhcCCceEEEEEEeCCCCCCCCCCceeeeecHHHHHH
Q psy4847 129 TLDVLLKQFKEGIKGHMAFVHRVNNEGEGDPFYETVGLITLEDVIE 174 (396)
Q Consensus 129 ~L~~~L~~f~~~~~~h~avV~~~~~~~~~De~g~~vGIVTleDIiE 174 (396)
++.+++..|.+. +.+.++|+ |+ |+++|+||..||+.
T Consensus 78 ~l~~~~~~~~~~-~~~~~~Vv--------d~-~~~~Gvi~~~dl~~ 113 (114)
T cd04630 78 DIKYCARLMERT-NIRRAPVV--------EN-NELIGIISLTDIFL 113 (114)
T ss_pred CHHHHHHHHHHc-CCCEeeEe--------eC-CEEEEEEEHHHhhc
Confidence 999999999985 77877777 66 89999999999874
No 25
>cd04642 CBS_pair_29 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.29 E-value=3.2e-11 Score=102.15 Aligned_cols=110 Identities=18% Similarity=0.225 Sum_probs=87.8
Q ss_pred CEEEEeCCCChhHHHHHHHHHcCCcEEEEEeCCCCcEEEEEEhhhhcccCCcccc----c----------hhhhhhhhcC
Q psy4847 54 DVYMLSYDAILDFETVSEIMKSGYSRIPVYEDRRTNIVTMFYIKDLALVDPDDNT----P----------LKTLCQFYQN 119 (396)
Q Consensus 54 dv~~l~~d~~l~~e~i~~i~~~g~sriPV~~~~~~~IVGiL~vkDLl~~~~~~~~----~----------l~~v~~~~~~ 119 (396)
++.+++.++++. +++..|.+.+++.+||++++ ++++|+++.+||+........ + +...+..+..
T Consensus 2 ~~~~v~~~~~~~-~a~~~~~~~~~~~i~V~d~~-~~~~Giv~~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (126)
T cd04642 2 KVVSIDSDERVL-DAFKLMRKNNISGLPVVDEK-GKLIGNISASDLKGLLLSPDDLLLYRTITFKELSEKFTDSDGVKSR 79 (126)
T ss_pred CeEEECCCccHH-HHHHHHHHhCCCcccEECCC-CcEEEEEEHHHhhhhhcCcchhhcccchhhhhhhhhcccccccccC
Confidence 467899999999 99999999999999999765 899999999999754321110 1 0122233457
Q ss_pred CceEEcCCCCHHHHHHHHHhcCCceEEEEEEeCCCCCCCCCCceeeeecHHHHHH
Q psy4847 120 SCYFVFEDTTLDVLLKQFKEGIKGHMAFVHRVNNEGEGDPFYETVGLITLEDVIE 174 (396)
Q Consensus 120 ~v~~V~~dt~L~~~L~~f~~~~~~h~avV~~~~~~~~~De~g~~vGIVTleDIiE 174 (396)
++.++++++++.++++.|.+. +.+.++|+ |++|+++|+||..||++
T Consensus 80 ~~~~v~~~~~l~~a~~~~~~~-~~~~l~Vv--------d~~~~~~Giit~~dil~ 125 (126)
T cd04642 80 PLITCTPSSTLKEVITKLVAN-KVHRVWVV--------DEEGKPIGVITLTDIIS 125 (126)
T ss_pred CCeEECCCCcHHHHHHHHHHh-CCcEEEEE--------CCCCCEEEEEEHHHHhc
Confidence 889999999999999999985 67777777 77799999999999974
No 26
>cd04593 CBS_pair_EriC_assoc_bac_arch This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the EriC CIC-type chloride channels in bacteria and archaea. These ion channels are proteins with a seemingly simple task of allowing the passive flow of chloride ions across biological membranes. CIC-type chloride channels come from all kingdoms of life, have several gene families, and can be gated by voltage. The members of the CIC-type chloride channel are double-barreled: two proteins forming homodimers at a broad interface formed by four helices from each protein. The two pores are not found at this interface, but are completely contained within each subunit, as deduced from the mutational analyses, unlike many other channels, in which four or five identical or structurally related subunits jointly form one pore. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS d
Probab=99.28 E-value=3.3e-11 Score=99.96 Aligned_cols=107 Identities=19% Similarity=0.163 Sum_probs=87.0
Q ss_pred EEEEeCCCChhHHHHHHHHHcCCcEEEEEeCCCCcEEEEEEhhhhcccCCc----cccchhhhhhhhcCCceEEcCCCCH
Q psy4847 55 VYMLSYDAILDFETVSEIMKSGYSRIPVYEDRRTNIVTMFYIKDLALVDPD----DNTPLKTLCQFYQNSCYFVFEDTTL 130 (396)
Q Consensus 55 v~~l~~d~~l~~e~i~~i~~~g~sriPV~~~~~~~IVGiL~vkDLl~~~~~----~~~~l~~v~~~~~~~v~~V~~dt~L 130 (396)
+..++.++++. ++++.|.+.+++++||++++ ++++|+++.+||+..... ...++.++ +.++++++.+++++
T Consensus 3 ~~~v~~~~~~~-~~~~~~~~~~~~~~~V~d~~-~~~~G~v~~~dl~~~~~~~~~~~~~~~~~~---~~~~~~~v~~~~~l 77 (115)
T cd04593 3 PPVLSATTPLR-EAAEQLIESKHGSALVVDRD-GGVVGIITLPDLLRALEADEAGEPSAVDEV---ATPPLLTVHPDEPL 77 (115)
T ss_pred CcEeCCCCCHH-HHHHHHHhCCCcEEEEEcCC-CCEEEEEEHHHHHHHHhcccccccccHHHh---ccCCceEECCCCCH
Confidence 45788999999 99999999999999999765 799999999999753221 11234444 45788999999999
Q ss_pred HHHHHHHHhcCCceEEEEEEeCCCCCCCCC--CceeeeecHHHHHHH
Q psy4847 131 DVLLKQFKEGIKGHMAFVHRVNNEGEGDPF--YETVGLITLEDVIEE 175 (396)
Q Consensus 131 ~~~L~~f~~~~~~h~avV~~~~~~~~~De~--g~~vGIVTleDIiEe 175 (396)
.+++..|.+. +.+.++|+ |+. |+++|+||..||+++
T Consensus 78 ~~~l~~~~~~-~~~~~~Vv--------d~~~~~~~~Gvit~~di~~~ 115 (115)
T cd04593 78 AHALDRMASR-GLRQLPVV--------DRGNPGQVLGLLTRENVLLA 115 (115)
T ss_pred HHHHHHHHHc-CCceeeEE--------eCCCCCeEEEEEEhHHhhcC
Confidence 9999999995 77777777 665 799999999999863
No 27
>cd04590 CBS_pair_CorC_HlyC_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the CorC_HlyC domain. CorC_HlyC is a transporter associated domain. This small domain is found in Na+/H+ antiporters, in proteins involved in magnesium and cobalt efflux, and in association with some proteins of unknown function. The function of the CorC_HlyC domain is uncertain but it might be involved in modulating transport of ion substrates. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role,
Probab=99.27 E-value=3.8e-11 Score=98.66 Aligned_cols=108 Identities=39% Similarity=0.576 Sum_probs=87.9
Q ss_pred CEEEEeCCCChhHHHHHHHHHcCCcEEEEEeCCCCcEEEEEEhhhhcccCCccc--cchhhhhhhhcCCceEEcCCCCHH
Q psy4847 54 DVYMLSYDAILDFETVSEIMKSGYSRIPVYEDRRTNIVTMFYIKDLALVDPDDN--TPLKTLCQFYQNSCYFVFEDTTLD 131 (396)
Q Consensus 54 dv~~l~~d~~l~~e~i~~i~~~g~sriPV~~~~~~~IVGiL~vkDLl~~~~~~~--~~l~~v~~~~~~~v~~V~~dt~L~ 131 (396)
++..++.++++. ++++.|.+.+++.+||++++.++++|+++.+||+.....+. .++..+ .+++.++.+++++.
T Consensus 2 ~~~~i~~~~~i~-~a~~~~~~~~~~~~~v~~~~~~~~~G~v~~~~l~~~~~~~~~~~~~~~~----~~~~~~v~~~~~l~ 76 (111)
T cd04590 2 DIVALDADDTLE-EILELIAESGHSRFPVYDGDLDNIIGVVHVKDLLRALAEGEEDLDLRDL----LRPPLFVPESTPLD 76 (111)
T ss_pred ceEEEcCCCCHH-HHHHHHhhCCCceEEEECCCCceEEEEEEHHHHHHHHHcCCCcCCHHHH----hcCCeecCCCCcHH
Confidence 477899999999 99999999999999999764368999999999975432211 234433 25788999999999
Q ss_pred HHHHHHHhcCCceEEEEEEeCCCCCCCCCCceeeeecHHHHHHH
Q psy4847 132 VLLKQFKEGIKGHMAFVHRVNNEGEGDPFYETVGLITLEDVIEE 175 (396)
Q Consensus 132 ~~L~~f~~~~~~h~avV~~~~~~~~~De~g~~vGIVTleDIiEe 175 (396)
++++.|.+. +.+.++|+ |+.|+++|+||..|+++|
T Consensus 77 ~~~~~~~~~-~~~~~~Vv--------~~~~~~~Gvit~~di~~~ 111 (111)
T cd04590 77 DLLEEMRKE-RSHMAIVV--------DEYGGTAGLVTLEDILEE 111 (111)
T ss_pred HHHHHHHhc-CCcEEEEE--------ECCCCEEEEeEHHHhhcC
Confidence 999999995 77888887 777899999999999864
No 28
>cd04618 CBS_pair_5 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera
Probab=99.26 E-value=5.5e-11 Score=97.42 Aligned_cols=95 Identities=16% Similarity=0.243 Sum_probs=81.6
Q ss_pred CEEEEeCCCChhHHHHHHHHHcCCcEEEEEeCCCCcEEEEEEhhhhcccCCccccchhhhhhhhcCCceEEcCCCCHHHH
Q psy4847 54 DVYMLSYDAILDFETVSEIMKSGYSRIPVYEDRRTNIVTMFYIKDLALVDPDDNTPLKTLCQFYQNSCYFVFEDTTLDVL 133 (396)
Q Consensus 54 dv~~l~~d~~l~~e~i~~i~~~g~sriPV~~~~~~~IVGiL~vkDLl~~~~~~~~~l~~v~~~~~~~v~~V~~dt~L~~~ 133 (396)
+++++++++++. ++.+.|.+.+++.+||++++.++++|+++.+|++.... +.++.+++++.++
T Consensus 2 ~~~~v~~~~~l~-~a~~~~~~~~~~~~~Vvd~~~~~~~Givt~~Dl~~~~~----------------~~~v~~~~~l~~a 64 (98)
T cd04618 2 KLVVFDTKLPVK-KAFNALVENGIRSAPLWDSRKQQFVGMLTITDFILILR----------------LVSIHPERSLFDA 64 (98)
T ss_pred eEEEECCCCcHH-HHHHHHHHcCCceEEEEeCCCCEEEEEEEHHHHhhhee----------------eEEeCCCCcHHHH
Confidence 478899999999 99999999999999999864478999999999974211 6789999999999
Q ss_pred HHHHHhcCCceEEEEEEeCCCCCCCCC-CceeeeecHHHHHH
Q psy4847 134 LKQFKEGIKGHMAFVHRVNNEGEGDPF-YETVGLITLEDVIE 174 (396)
Q Consensus 134 L~~f~~~~~~h~avV~~~~~~~~~De~-g~~vGIVTleDIiE 174 (396)
++.|.++ +.+.++|+ |+. |+++|+||..||+.
T Consensus 65 ~~~m~~~-~~~~lpVv--------d~~~~~~~giit~~d~~~ 97 (98)
T cd04618 65 ALLLLKN-KIHRLPVI--------DPSTGTGLYILTSRRILK 97 (98)
T ss_pred HHHHHHC-CCCEeeEE--------ECCCCCceEEeehhhhhc
Confidence 9999985 67777787 665 89999999999863
No 29
>PRK11543 gutQ D-arabinose 5-phosphate isomerase; Provisional
Probab=99.26 E-value=2.7e-11 Score=119.83 Aligned_cols=120 Identities=16% Similarity=0.132 Sum_probs=98.7
Q ss_pred ccccccccccCCCEEEEeCCCChhHHHHHHHHHcCCcEEEEEeCCCCcEEEEEEhhhhccc--C-Cccccchhhhhhhhc
Q psy4847 42 RKIVGDVMTKLEDVYMLSYDAILDFETVSEIMKSGYSRIPVYEDRRTNIVTMFYIKDLALV--D-PDDNTPLKTLCQFYQ 118 (396)
Q Consensus 42 ~~tV~dIMtp~~dv~~l~~d~~l~~e~i~~i~~~g~sriPV~~~~~~~IVGiL~vkDLl~~--~-~~~~~~l~~v~~~~~ 118 (396)
..+|+++|++..++..+++++++. ++++.|.+++...+||++++ ++++|+|+.+||... . .....++.++| .
T Consensus 196 ~~~V~~im~~~~~~~~v~~~~sv~-~a~~~~~~~~~~~~~Vvd~~-g~~iG~vt~~dl~~~~~~~~~~~~~v~~im---~ 270 (321)
T PRK11543 196 LNKVHHLMRRDDAIPQVALTASVM-DAMLELSRTGLGLVAVCDAQ-QQVQGVFTDGDLRRWLVGGGALTTPVNEAM---T 270 (321)
T ss_pred HhHHHHHhccCCCCcEeCCCCCHH-HHHHHHHHcCCCEEEEEcCC-CcEEEEecHHHHHHHHhCCCCcCCcHHHhc---C
Confidence 578999998754478999999999 99999998999999999865 799999999998642 1 11233566665 4
Q ss_pred CCceEEcCCCCHHHHHHHHHhcCCceEEEEEEeCCCCCCCCCCceeeeecHHHHHHH
Q psy4847 119 NSCYFVFEDTTLDVLLKQFKEGIKGHMAFVHRVNNEGEGDPFYETVGLITLEDVIEE 175 (396)
Q Consensus 119 ~~v~~V~~dt~L~~~L~~f~~~~~~h~avV~~~~~~~~~De~g~~vGIVTleDIiEe 175 (396)
++++++.+++++.++++.|.+. +...++|+ |+.|+++|+||..||+.+
T Consensus 271 ~~~~~v~~~~~l~~a~~~m~~~-~~~~lpVv--------d~~~~lvGvIt~~di~~~ 318 (321)
T PRK11543 271 RGGTTLQAQSRAIDAKEILMKR-KITAAPVV--------DENGKLTGAINLQDFYQA 318 (321)
T ss_pred CCCEEECCCCCHHHHHHHHHHc-CCCEEEEE--------cCCCeEEEEEEHHHHHhc
Confidence 7888999999999999999985 67777777 777899999999999864
No 30
>cd04631 CBS_pair_18 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.26 E-value=5.5e-11 Score=99.73 Aligned_cols=108 Identities=18% Similarity=0.268 Sum_probs=87.9
Q ss_pred CEEEEeCCCChhHHHHHHHHHcCCcEEEEEeCCCCcEEEEEEhhhhcccCCcc---------------ccchhhhhhhhc
Q psy4847 54 DVYMLSYDAILDFETVSEIMKSGYSRIPVYEDRRTNIVTMFYIKDLALVDPDD---------------NTPLKTLCQFYQ 118 (396)
Q Consensus 54 dv~~l~~d~~l~~e~i~~i~~~g~sriPV~~~~~~~IVGiL~vkDLl~~~~~~---------------~~~l~~v~~~~~ 118 (396)
++..++.+.++. ++++.+.+.++..+||++++.++++|+|+.+||+...... ..++.++ +.
T Consensus 2 ~~~~v~~~~~~~-~~~~~~~~~~~~~i~V~d~~~~~~~G~v~~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~ 77 (125)
T cd04631 2 DVVTVPPTTPIM-EAAKIMVRNGFRRLPVVDEGTGKLVGIITATDILKYLGGGEKFNKIKTGNGLEAINEPVRSI---MT 77 (125)
T ss_pred CceEeCCCCcHH-HHHHHHHHcCcccceeEeCCCCEEEEEEEHHHHHHHhhccchhccccccccchhhhcCHHHH---hc
Confidence 356789999999 9999999999999999976447899999999997432111 1234444 45
Q ss_pred CCceEEcCCCCHHHHHHHHHhcCCceEEEEEEeCCCCCCCCCCceeeeecHHHHHH
Q psy4847 119 NSCYFVFEDTTLDVLLKQFKEGIKGHMAFVHRVNNEGEGDPFYETVGLITLEDVIE 174 (396)
Q Consensus 119 ~~v~~V~~dt~L~~~L~~f~~~~~~h~avV~~~~~~~~~De~g~~vGIVTleDIiE 174 (396)
++++++++++++.++++.|.+. +.+.++|+ |++|+++|+||..||++
T Consensus 78 ~~~~~v~~~~~l~~~~~~~~~~-~~~~~~V~--------~~~~~~~Gvit~~di~~ 124 (125)
T cd04631 78 RNVITITPDDSIKDAAELMLEK-RVGGLPVV--------DDDGKLVGIVTERDLLK 124 (125)
T ss_pred CCceEeCCCCcHHHHHHHHHHc-CCceEEEE--------cCCCcEEEEEEHHHhhc
Confidence 7899999999999999999995 77778887 77789999999999975
No 31
>cd04588 CBS_pair_CAP-ED_DUF294_assoc_arch This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the archaeal CAP_ED (cAMP receptor protein effector domain) family of transcription factors and the DUF294 domain. Members of CAP_ED, include CAP which binds cAMP, FNR (fumarate and nitrate reductase) which uses an iron-sulfur cluster to sense oxygen, and CooA a heme containing CO sensor. In all cases binding of the effector leads to conformational changes and the ability to activate transcription. DUF294 is a putative nucleotidyltransferase with a conserved DxD motif. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site.
Probab=99.25 E-value=9.1e-11 Score=96.20 Aligned_cols=106 Identities=20% Similarity=0.219 Sum_probs=87.1
Q ss_pred CEEEEeCCCChhHHHHHHHHHcCCcEEEEEeCCCCcEEEEEEhhhhcccCCcc--ccchhhhhhhhcCCceEEcCCCCHH
Q psy4847 54 DVYMLSYDAILDFETVSEIMKSGYSRIPVYEDRRTNIVTMFYIKDLALVDPDD--NTPLKTLCQFYQNSCYFVFEDTTLD 131 (396)
Q Consensus 54 dv~~l~~d~~l~~e~i~~i~~~g~sriPV~~~~~~~IVGiL~vkDLl~~~~~~--~~~l~~v~~~~~~~v~~V~~dt~L~ 131 (396)
++..++.++++. ++.+.|.+.+++++||+++ ++++|+++.+||+...... ..++.++ +.+++.+|+++.++.
T Consensus 2 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~v~~~--~~~~G~v~~~~l~~~~~~~~~~~~v~~~---~~~~~~~v~~~~~~~ 75 (110)
T cd04588 2 PLITLNPNATLR-EAARLFNTHHIHGAPVVDD--GKLVGIVTLSDIAHAIARGLELAKVKDV---MTKDVITIDEDEQLY 75 (110)
T ss_pred CcEEECCCCCHH-HHHHHHHHcCCCEEEEeeC--CEEEEEEEHHHHHHHHhccccccCHHHH---hcCCceEECCCCCHH
Confidence 367788999999 9999999999999999976 7899999999998643221 1244444 457889999999999
Q ss_pred HHHHHHHhcCCceEEEEEEeCCCCCCCCCCceeeeecHHHHHH
Q psy4847 132 VLLKQFKEGIKGHMAFVHRVNNEGEGDPFYETVGLITLEDVIE 174 (396)
Q Consensus 132 ~~L~~f~~~~~~h~avV~~~~~~~~~De~g~~vGIVTleDIiE 174 (396)
++++.|.+. ..+.++|+ |+.|+++|+||..|+++
T Consensus 76 ~~~~~~~~~-~~~~~~V~--------~~~~~~~G~i~~~dl~~ 109 (110)
T cd04588 76 DAIRLMNKH-NVGRLIVT--------DDEGRPVGIITRTDILR 109 (110)
T ss_pred HHHHHHHhc-CCCEEEEE--------CCCCCEEEEEEhHHhhc
Confidence 999999985 67777777 77789999999999874
No 32
>PRK10892 D-arabinose 5-phosphate isomerase; Provisional
Probab=99.25 E-value=3.6e-11 Score=119.32 Aligned_cols=120 Identities=17% Similarity=0.145 Sum_probs=97.5
Q ss_pred cccccccccccCCCEEEEeCCCChhHHHHHHHHHcCCcEEEEEeCCCCcEEEEEEhhhhcccCCc----cccchhhhhhh
Q psy4847 41 RRKIVGDVMTKLEDVYMLSYDAILDFETVSEIMKSGYSRIPVYEDRRTNIVTMFYIKDLALVDPD----DNTPLKTLCQF 116 (396)
Q Consensus 41 ~~~tV~dIMtp~~dv~~l~~d~~l~~e~i~~i~~~g~sriPV~~~~~~~IVGiL~vkDLl~~~~~----~~~~l~~v~~~ 116 (396)
...+|+|+|++..++..+++++++. ++++.|.++++..+||++++ ++++|+|+.+|+..+... ...++.++|
T Consensus 200 ~~~~V~dim~~~~~~~~v~~~~sl~-~a~~~~~~~~~~~~vVvd~~-g~lvGivt~~Dl~~~~~~~~~~~~~~v~~im-- 275 (326)
T PRK10892 200 LLLRVSDIMHTGDEIPHVSKTASLR-DALLEITRKNLGMTVICDDN-MKIEGIFTDGDLRRVFDMGIDLRQASIADVM-- 275 (326)
T ss_pred ccCcHHHHhCCCCCCeEECCCCCHH-HHHHHHHhcCCCeEEEEcCC-CcEEEEEecHHHHHHHhcCCCcccCCHHHhc--
Confidence 6678999999744688999999999 99999999998777887654 799999999998743211 123566665
Q ss_pred hcCCceEEcCCCCHHHHHHHHHhcCCceEEEEEEeCCCCCCCCCCceeeeecHHHHHHH
Q psy4847 117 YQNSCYFVFEDTTLDVLLKQFKEGIKGHMAFVHRVNNEGEGDPFYETVGLITLEDVIEE 175 (396)
Q Consensus 117 ~~~~v~~V~~dt~L~~~L~~f~~~~~~h~avV~~~~~~~~~De~g~~vGIVTleDIiEe 175 (396)
.+++++|.+++++.++++.|.+. +.+.++|+ | .|+++||||..||+..
T Consensus 276 -~~~~~~v~~~~~l~~a~~~m~~~-~~~~lpVv--------~-~~~lvGiit~~dil~~ 323 (326)
T PRK10892 276 -TPGGIRVRPGILAVDALNLMQSR-HITSVLVA--------D-GDHLLGVLHMHDLLRA 323 (326)
T ss_pred -CCCCEEECCCCCHHHHHHHHHHC-CCcEEEEe--------e-CCEEEEEEEhHHhHhc
Confidence 57889999999999999999985 67777776 4 4789999999999864
No 33
>COG2239 MgtE Mg/Co/Ni transporter MgtE (contains CBS domain) [Inorganic ion transport and metabolism]
Probab=99.25 E-value=7.1e-11 Score=121.87 Aligned_cols=156 Identities=19% Similarity=0.287 Sum_probs=126.5
Q ss_pred CHHHHHHHHHccccccc-cccCCCCHHHHHHHHHHhcccccccccccccCCCEEEEeCCCChhHHHHHHHHHcCC-----
Q psy4847 4 HPQGLRSFIRVRDHDVT-TEFNDLEKDEVNIISGALELRRKIVGDVMTKLEDVYMLSYDAILDFETVSEIMKSGY----- 77 (396)
Q Consensus 4 ~~~Elk~ll~~~~~~~~-~e~~~l~~~E~~~i~~alel~~~tV~dIMtp~~dv~~l~~d~~l~~e~i~~i~~~g~----- 77 (396)
+.++...++++...+.- ..-..++++++..+..++.+.+.+++.+||.. +++++.+.++. +++..+.+.+.
T Consensus 92 ~~Dd~~~ll~elp~~~~~~lL~~l~~~~r~~v~~~l~y~e~taG~~Mt~e--~v~l~~~~Tv~-~al~~ir~~~~~~e~~ 168 (451)
T COG2239 92 DIDDAADLLDELPDEVRDELLSLLDPEERARVRQLLSYPEDTAGRIMTTE--FVTLPEDVTVD-EALDRIRERAEDAETI 168 (451)
T ss_pred CcHHHHHHHHhCCHHHHHHHHHhCCHHHHHHHHHhcCCChhhhhccceee--eEEeccCcCHH-HHHHHHHHhccccccc
Confidence 34444455554433322 44456899999999999999999999999965 89999999999 99999985542
Q ss_pred cEEEEEeCCCCcEEEEEEhhhhcccCCccccchhhhhhhhcCCceEEcCCCCHHHHHHHHHhcCCceEEEEEEeCCCCCC
Q psy4847 78 SRIPVYEDRRTNIVTMFYIKDLALVDPDDNTPLKTLCQFYQNSCYFVFEDTTLDVLLKQFKEGIKGHMAFVHRVNNEGEG 157 (396)
Q Consensus 78 sriPV~~~~~~~IVGiL~vkDLl~~~~~~~~~l~~v~~~~~~~v~~V~~dt~L~~~L~~f~~~~~~h~avV~~~~~~~~~ 157 (396)
..+.|+|.+ ++++|+++.++|+..+|+. +++++|. +.+++|.+++...++.+.|++. ..-.++|+
T Consensus 169 ~~lyVvD~~-~~L~Gvvsl~~Ll~a~~~~--~i~~im~---~~~~~V~~~~dqeevA~~~~~y-dl~a~PVV-------- 233 (451)
T COG2239 169 YYLYVVDEK-GKLLGVVSLRDLLTAEPDE--LLKDLME---DDVVSVLADDDQEEVARLFEKY-DLLAVPVV-------- 233 (451)
T ss_pred ceEEEECCc-cceEEEeeHHHHhcCCcHh--HHHHHhc---ccceeecccCCHHHHHHHHHHh-CCeecceE--------
Confidence 344566654 6899999999999887765 7888875 6689999999999999999995 67777777
Q ss_pred CCCCceeeeecHHHHHHHHH
Q psy4847 158 DPFYETVGLITLEDVIEELI 177 (396)
Q Consensus 158 De~g~~vGIVTleDIiEeli 177 (396)
|+.++++|+||.+||++.|.
T Consensus 234 d~~~~LiG~itiDDiidvi~ 253 (451)
T COG2239 234 DEDNRLIGIITIDDIIDVIE 253 (451)
T ss_pred CCCCceeeeeeHHHHHHHHH
Confidence 99999999999999999875
No 34
>cd04619 CBS_pair_6 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera
Probab=99.24 E-value=1e-10 Score=97.23 Aligned_cols=106 Identities=12% Similarity=0.158 Sum_probs=87.3
Q ss_pred EEEEeCCCChhHHHHHHHHHcCCcEEEEEeCCCCcEEEEEEhhhhcccC-----CccccchhhhhhhhcCCceEEcCCCC
Q psy4847 55 VYMLSYDAILDFETVSEIMKSGYSRIPVYEDRRTNIVTMFYIKDLALVD-----PDDNTPLKTLCQFYQNSCYFVFEDTT 129 (396)
Q Consensus 55 v~~l~~d~~l~~e~i~~i~~~g~sriPV~~~~~~~IVGiL~vkDLl~~~-----~~~~~~l~~v~~~~~~~v~~V~~dt~ 129 (396)
+..++.++++. ++...|.+.++..+||++++ ++++|+++.+|++... .....++.+++ ..+++++.++++
T Consensus 3 ~~~v~~~~~l~-~a~~~~~~~~~~~~~Vvd~~-g~~~G~vt~~dl~~~~~~~~~~~~~~~v~~~~---~~~~~~v~~~~~ 77 (114)
T cd04619 3 LAKIDVNATLQ-RAAKILGEPGIDLVVVCDPH-GKLAGVLTKTDVVRQMGRCGGPGCTAPVENVM---TRAVVSCRPGDL 77 (114)
T ss_pred eEEECCCCcHH-HHHHHHHhcCCCEEEEECCC-CCEEEEEehHHHHHHHhhcCCCcccCCHHHHh---cCCCeeECCCCC
Confidence 66789999999 99999999999999999765 7899999999987422 11123555554 578889999999
Q ss_pred HHHHHHHHHhcCCceEEEEEEeCCCCCCCCCCceeeeecHHHHHH
Q psy4847 130 LDVLLKQFKEGIKGHMAFVHRVNNEGEGDPFYETVGLITLEDVIE 174 (396)
Q Consensus 130 L~~~L~~f~~~~~~h~avV~~~~~~~~~De~g~~vGIVTleDIiE 174 (396)
+.++++.|.+. ..+.++|+ |+.|+++|+||..|+++
T Consensus 78 l~~a~~~m~~~-~~~~lpVv--------d~~~~~~Gvi~~~dl~~ 113 (114)
T cd04619 78 LHDVWQVMKQR-GLKNIPVV--------DENARPLGVLNARDALK 113 (114)
T ss_pred HHHHHHHHHHc-CCCeEEEE--------CCCCcEEEEEEhHhhcc
Confidence 99999999995 67667777 77789999999999875
No 35
>cd04611 CBS_pair_PAS_GGDEF_DUF1_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with a PAS domain, a GGDEF (DiGuanylate-Cyclase (DGC) domain, and a DUF1 domain downstream. PAS domains have been found to bind ligands, and to act as sensors for light and oxygen in signal transduction. The GGDEF domain has been suggested to be homologous to the adenylyl cyclase catalytic domain and is thought to be involved in regulating cell surface adhesiveness in bacteria. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CB
Probab=99.24 E-value=1.3e-10 Score=95.16 Aligned_cols=106 Identities=21% Similarity=0.195 Sum_probs=87.2
Q ss_pred CEEEEeCCCChhHHHHHHHHHcCCcEEEEEeCCCCcEEEEEEhhhhcccCCc---cccchhhhhhhhcCCceEEcCCCCH
Q psy4847 54 DVYMLSYDAILDFETVSEIMKSGYSRIPVYEDRRTNIVTMFYIKDLALVDPD---DNTPLKTLCQFYQNSCYFVFEDTTL 130 (396)
Q Consensus 54 dv~~l~~d~~l~~e~i~~i~~~g~sriPV~~~~~~~IVGiL~vkDLl~~~~~---~~~~l~~v~~~~~~~v~~V~~dt~L 130 (396)
++.+++.+.++. ++++.|.+.++..+||+++ ++++|+++.+||+..... ...++.+++ .++++++++++++
T Consensus 2 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~V~~~--~~~~G~v~~~~l~~~~~~~~~~~~~v~~~~---~~~~~~~~~~~~l 75 (111)
T cd04611 2 QILTCPPDTSLA-EAASRMRERRISSIVVVDD--GRPLGIVTERDILRLLASGPDLQTPVGEVM---SSPLLTVPADTSL 75 (111)
T ss_pred CceEECCCCcHH-HHHHHHHHcCCCEEEEeeC--CEEEEEEeHHHHHHHHhcCCCCCcCHHHhc---CCCceEECCCCCH
Confidence 356789999999 9999999889999999976 789999999999753221 223555554 5788999999999
Q ss_pred HHHHHHHHhcCCceEEEEEEeCCCCCCCCCCceeeeecHHHHHH
Q psy4847 131 DVLLKQFKEGIKGHMAFVHRVNNEGEGDPFYETVGLITLEDVIE 174 (396)
Q Consensus 131 ~~~L~~f~~~~~~h~avV~~~~~~~~~De~g~~vGIVTleDIiE 174 (396)
.++++.|.+. +.+.++|+ |+.|+++|+||..||++
T Consensus 76 ~~~l~~~~~~-~~~~~~Vv--------~~~~~~~Gvi~~~di~~ 110 (111)
T cd04611 76 YDARQLMREH-GIRHLVVV--------DDDGELLGLLSQTDLLQ 110 (111)
T ss_pred HHHHHHHHHc-CCeEEEEE--------CCCCcEEEEEEhHHhhc
Confidence 9999999984 67777787 77789999999999975
No 36
>cd04599 CBS_pair_GGDEF_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with the GGDEF (DiGuanylate-Cyclase (DGC)) domain. The GGDEF domain has been suggested to be homologous to the adenylyl cyclase catalytic domain and is thought to be involved in regulating cell surface adhesiveness in bacteria. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=99.24 E-value=9.3e-11 Score=95.19 Aligned_cols=102 Identities=16% Similarity=0.137 Sum_probs=85.8
Q ss_pred EEEEeCCCChhHHHHHHHHHcCCcEEEEEeCCCCcEEEEEEhhhhcccCCccccchhhhhhhhcCCceEEcCCCCHHHHH
Q psy4847 55 VYMLSYDAILDFETVSEIMKSGYSRIPVYEDRRTNIVTMFYIKDLALVDPDDNTPLKTLCQFYQNSCYFVFEDTTLDVLL 134 (396)
Q Consensus 55 v~~l~~d~~l~~e~i~~i~~~g~sriPV~~~~~~~IVGiL~vkDLl~~~~~~~~~l~~v~~~~~~~v~~V~~dt~L~~~L 134 (396)
+..++.++++. ++++.|.+.++..+||+++ ++++|+++.+||+..... .++.+++ ..++.++++++++.+++
T Consensus 3 ~~~~~~~~~~~-~~~~~~~~~~~~~~~V~d~--~~~~Giv~~~~l~~~~~~--~~~~~~~---~~~~~~v~~~~~l~~~~ 74 (105)
T cd04599 3 PITIDPLDSVG-RAARLMEKHRIGGLPVVED--GKLVGIITSRDVRRAHPN--RLVADAM---TREVVTISPEASLLEAK 74 (105)
T ss_pred CEEECCCCcHH-HHHHHHHHcCCCEEEEEEC--CEEEEEEehHHhhccccc--CCHHHHc---cCCCEEECCCCCHHHHH
Confidence 56789999999 9999998899999999973 799999999999875432 3556555 47888999999999999
Q ss_pred HHHHhcCCceEEEEEEeCCCCCCCCCCceeeeecHHHHHH
Q psy4847 135 KQFKEGIKGHMAFVHRVNNEGEGDPFYETVGLITLEDVIE 174 (396)
Q Consensus 135 ~~f~~~~~~h~avV~~~~~~~~~De~g~~vGIVTleDIiE 174 (396)
+.|.+. ....++|+ |+ |+++|+||..||+.
T Consensus 75 ~~~~~~-~~~~~~Vv--------~~-~~~~G~it~~~l~~ 104 (105)
T cd04599 75 RLMEEK-KIERLPVL--------RE-RKLVGIITKGTIAL 104 (105)
T ss_pred HHHHHc-CCCEeeEE--------EC-CEEEEEEEHHHhcc
Confidence 999985 67777777 66 89999999999975
No 37
>cd04803 CBS_pair_15 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.24 E-value=9.5e-11 Score=97.88 Aligned_cols=107 Identities=22% Similarity=0.229 Sum_probs=87.1
Q ss_pred CEEEEeCCCChhHHHHHHHHHcCCcEEEEEeCCCCcEEEEEEhhhhcccCCc-------------cccchhhhhhhhcCC
Q psy4847 54 DVYMLSYDAILDFETVSEIMKSGYSRIPVYEDRRTNIVTMFYIKDLALVDPD-------------DNTPLKTLCQFYQNS 120 (396)
Q Consensus 54 dv~~l~~d~~l~~e~i~~i~~~g~sriPV~~~~~~~IVGiL~vkDLl~~~~~-------------~~~~l~~v~~~~~~~ 120 (396)
++.++..++++. ++.+.|.+.+++++||++++ ++++|+++.+||+..... ...++.+ ++.++
T Consensus 2 ~~~~v~~~~~~~-~~~~~~~~~~~~~~~V~~~~-~~~~G~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~v~~---~~~~~ 76 (122)
T cd04803 2 PVVTLSEDDSLA-DAEELMREHRIRHLPVVNED-GKLVGLLTQRDLLRAALSSLSDNGEESLTKERDVPVAE---VMKTD 76 (122)
T ss_pred CCEEeCCCCcHH-HHHHHHHHcCcccccEECCC-CCEEEEEEHHHHHHHhccccccccccccccccCcCHHH---hhCCC
Confidence 356789999999 99999999999999999765 799999999998743211 1223444 44578
Q ss_pred ceEEcCCCCHHHHHHHHHhcCCceEEEEEEeCCCCCCCCCCceeeeecHHHHHH
Q psy4847 121 CYFVFEDTTLDVLLKQFKEGIKGHMAFVHRVNNEGEGDPFYETVGLITLEDVIE 174 (396)
Q Consensus 121 v~~V~~dt~L~~~L~~f~~~~~~h~avV~~~~~~~~~De~g~~vGIVTleDIiE 174 (396)
+.++++++++.++++.|.+. ..+.++|+ |+.|+++|+||..|+++
T Consensus 77 ~~~v~~~~~~~~~~~~~~~~-~~~~~~Vv--------~~~~~~~Gvit~~dl~~ 121 (122)
T cd04803 77 VLTVTPDTPLREAAEIMVEN-KIGCLPVV--------DDKGTLVGIITRSDFLR 121 (122)
T ss_pred CeEeCCCCcHHHHHHHHHHc-CCCeEEEE--------cCCCCEEEEEEHHHhhc
Confidence 89999999999999999985 67777777 77789999999999975
No 38
>cd04613 CBS_pair_SpoIVFB_EriC_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with either the SpoIVFB domain (sporulation protein, stage IV cell wall formation, F locus, promoter-distal B) or the chloride channel protein EriC. SpoIVFB is one of 4 proteins involved in endospore formation; the others are SpoIVFA (sporulation protein, stage IV cell wall formation, F locus, promoter-proximal A), BofA (bypass-of-forespore A ), and SpoIVB (sporulation protein, stage IV cell wall formation, B locus). SpoIVFB is negatively regulated by SpoIVFA and BofA and activated by SpoIVB. It is thought that SpoIVFB, SpoIVFA, and BofA are located in the mother-cell membrane that surrounds the forespore and that SpoIVB is secreted from the forespore into the space between the two where it activates SpoIVFB. EriC is involved in inorganic ion transport and metabolism. CBS is a small domain originally identified in cystathionine beta-synthase a
Probab=99.24 E-value=7.1e-11 Score=96.97 Aligned_cols=107 Identities=21% Similarity=0.289 Sum_probs=86.6
Q ss_pred CEEEEeCCCChhHHHHHHHHHcCCcEEEEEeCCCCcEEEEEEhhhhcccCCc-c---ccchhhhhhhhcCCceEEcCCCC
Q psy4847 54 DVYMLSYDAILDFETVSEIMKSGYSRIPVYEDRRTNIVTMFYIKDLALVDPD-D---NTPLKTLCQFYQNSCYFVFEDTT 129 (396)
Q Consensus 54 dv~~l~~d~~l~~e~i~~i~~~g~sriPV~~~~~~~IVGiL~vkDLl~~~~~-~---~~~l~~v~~~~~~~v~~V~~dt~ 129 (396)
++.+++.++++. ++.+.+.+.+++++||++++ ++++|+++.+||+..... . ..++.++ +.+++.+|+++++
T Consensus 2 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~v~~~~-~~~~G~v~~~~l~~~~~~~~~~~~~~v~~~---~~~~~~~v~~~~~ 76 (114)
T cd04613 2 DVVTIPEDTPLN-ELLDVIAHSPENNFPVVDDD-GRLVGIVSLDDIREILFDPSLYDLVVASDI---MTKPPVVVYPEDS 76 (114)
T ss_pred CceeeCCCCcHH-HHHHHHHhCCCcceeEECCC-CCEEEEEEHHHHHHHHhcccccccEEHHHh---ccCCCcEEcCCCC
Confidence 366789999999 99999999999999999765 789999999999753211 1 1344444 4578899999999
Q ss_pred HHHHHHHHHhcCCceEEEEEEeCCCCCCCC-CCceeeeecHHHHHH
Q psy4847 130 LDVLLKQFKEGIKGHMAFVHRVNNEGEGDP-FYETVGLITLEDVIE 174 (396)
Q Consensus 130 L~~~L~~f~~~~~~h~avV~~~~~~~~~De-~g~~vGIVTleDIiE 174 (396)
+.++++.|.+. ..+.++|+ |+ .|+++|+||..||+.
T Consensus 77 ~~~~~~~~~~~-~~~~~~Vv--------~~~~~~~~Gvvt~~di~~ 113 (114)
T cd04613 77 LEDALKKFEDS-DYEQLPVV--------DDDPGKLLGILSRSDLLS 113 (114)
T ss_pred HHHHHHHHhhC-CccEeeEE--------eCCCCEEEEEEEhHHhhc
Confidence 99999999985 66666676 55 789999999999875
No 39
>cd04612 CBS_pair_SpoIVFB_EriC_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with either the SpoIVFB domain (sporulation protein, stage IV cell wall formation, F locus, promoter-distal B) or the chloride channel protein EriC. SpoIVFB is one of 4 proteins involved in endospore formation; the others are SpoIVFA (sporulation protein, stage IV cell wall formation, F locus, promoter-proximal A), BofA (bypass-of-forespore A ), and SpoIVB (sporulation protein, stage IV cell wall formation, B locus). SpoIVFB is negatively regulated by SpoIVFA and BofA and activated by SpoIVB. It is thought that SpoIVFB, SpoIVFA, and BofA are located in the mother-cell membrane that surrounds the forespore and that SpoIVB is secreted from the forespore into the space between the two where it activates SpoIVFB. EriC is involved in inorganic ion transport and metabolism. CBS is a small domain originally identified in cystathionine beta-synthase an
Probab=99.24 E-value=1.1e-10 Score=95.54 Aligned_cols=108 Identities=19% Similarity=0.209 Sum_probs=87.2
Q ss_pred EEEEeCCCChhHHHHHHHHHcCCcEEEEEeCCCCcEEEEEEhhhhcccCCccccchhhhhhhhcCCceEEcCCCCHHHHH
Q psy4847 55 VYMLSYDAILDFETVSEIMKSGYSRIPVYEDRRTNIVTMFYIKDLALVDPDDNTPLKTLCQFYQNSCYFVFEDTTLDVLL 134 (396)
Q Consensus 55 v~~l~~d~~l~~e~i~~i~~~g~sriPV~~~~~~~IVGiL~vkDLl~~~~~~~~~l~~v~~~~~~~v~~V~~dt~L~~~L 134 (396)
+..++.++++. ++++.|.+.+++++||+++ ++++|+++.+||+............+.+++..+++++.+++++.+++
T Consensus 3 ~~~~~~~~~~~-~~~~~~~~~~~~~~~v~~~--~~~~G~v~~~dl~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~ 79 (111)
T cd04612 3 VVTVPVDLTVD-EVLALMFGERHRGYPVVDD--GRLVGIVTLADIRRVPAEGREATVLVGDVMTRDPVTASPDETLRDAL 79 (111)
T ss_pred CEEeCCCCcHH-HHHHHHHHcCCCcceEeeC--CeEEEEEEHHHHHHHHhcCcccccCHHHhccCCCeEECCCCCHHHHH
Confidence 56789999999 9999999899999999976 78999999999986433221110123344567899999999999999
Q ss_pred HHHHhcCCceEEEEEEeCCCCCCCCCCceeeeecHHHHHH
Q psy4847 135 KQFKEGIKGHMAFVHRVNNEGEGDPFYETVGLITLEDVIE 174 (396)
Q Consensus 135 ~~f~~~~~~h~avV~~~~~~~~~De~g~~vGIVTleDIiE 174 (396)
+.|.+. +.+.++|+ |+.|+++|+||..||++
T Consensus 80 ~~~~~~-~~~~~~V~--------~~~~~~~G~it~~di~~ 110 (111)
T cd04612 80 KRMAER-DIGRLPVV--------DDSGRLVGIVSRSDLLR 110 (111)
T ss_pred HHHHhC-CCCeeeEE--------cCCCCEEEEEEHHHhhh
Confidence 999995 77777787 66789999999999975
No 40
>cd04607 CBS_pair_NTP_transferase_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domain associated with the NTP (Nucleotidyl transferase) domain downstream. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=99.22 E-value=1.4e-10 Score=95.86 Aligned_cols=105 Identities=16% Similarity=0.165 Sum_probs=85.2
Q ss_pred EEEEeCCCChhHHHHHHHHHcCCcEEEEEeCCCCcEEEEEEhhhhccc--CCc-cccchhhhhhhhcCCceEEcCCCCHH
Q psy4847 55 VYMLSYDAILDFETVSEIMKSGYSRIPVYEDRRTNIVTMFYIKDLALV--DPD-DNTPLKTLCQFYQNSCYFVFEDTTLD 131 (396)
Q Consensus 55 v~~l~~d~~l~~e~i~~i~~~g~sriPV~~~~~~~IVGiL~vkDLl~~--~~~-~~~~l~~v~~~~~~~v~~V~~dt~L~ 131 (396)
.+.++.++++. +++..|.+.++..+||++++ ++++|+++.+|++.. ... ...++.+++ ..++..|.+++++.
T Consensus 4 ~~~v~~~~~~~-~~~~~~~~~~~~~~~v~d~~-~~~~G~v~~~dl~~~~~~~~~~~~~v~~~~---~~~~~~v~~~~~l~ 78 (113)
T cd04607 4 QLLVSPDASIL-DALRKIDKNALRIVLVVDEN-GRLLGTVTDGDIRRALLKGLSLDDPVSEVM---NRNPITAKVGSSRE 78 (113)
T ss_pred ceEECCCCCHH-HHHHHHHhcCcCEEEEECCC-CCEEEEEEcHHHHHHHhcCCCcCCCHHHhh---cCCCEEEcCCCCHH
Confidence 45789999999 99999988899999999765 789999999998642 111 123455554 47788999999999
Q ss_pred HHHHHHHhcCCceEEEEEEeCCCCCCCCCCceeeeecHHHHH
Q psy4847 132 VLLKQFKEGIKGHMAFVHRVNNEGEGDPFYETVGLITLEDVI 173 (396)
Q Consensus 132 ~~L~~f~~~~~~h~avV~~~~~~~~~De~g~~vGIVTleDIi 173 (396)
++++.|.+. ..+.++|+ |+.|+++|+||..||+
T Consensus 79 ~~~~~~~~~-~~~~~~Vv--------~~~~~~~Gvit~~di~ 111 (113)
T cd04607 79 EILALMRER-SIRHLPIL--------DEEGRVVGLATLDDLL 111 (113)
T ss_pred HHHHHHHHC-CCCEEEEE--------CCCCCEEEEEEhHHhc
Confidence 999999995 67777777 7778999999999986
No 41
>cd04636 CBS_pair_23 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.22 E-value=8.1e-11 Score=100.42 Aligned_cols=109 Identities=22% Similarity=0.223 Sum_probs=86.1
Q ss_pred CEEEEeCCCChhHHHHHHHHHcCCcEEEEEeCCCCcEEEEEEhhhhcccCCcc----cc-----------------chhh
Q psy4847 54 DVYMLSYDAILDFETVSEIMKSGYSRIPVYEDRRTNIVTMFYIKDLALVDPDD----NT-----------------PLKT 112 (396)
Q Consensus 54 dv~~l~~d~~l~~e~i~~i~~~g~sriPV~~~~~~~IVGiL~vkDLl~~~~~~----~~-----------------~l~~ 112 (396)
++.++..++++. ++++.+.+.+++++||++++ ++++|+++.+||+...... .. ...+
T Consensus 2 ~~~~v~~~~~l~-~~~~~~~~~~~~~~~V~d~~-~~~~G~i~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (132)
T cd04636 2 DVITVKKDDTLR-DVVEILLTGKISGVPVVDNE-GRVVGIVSEGDLIRKIYKGKGLFYVTLLYSVIFLDESKIKKLLGKK 79 (132)
T ss_pred CCeEeCCCCcHH-HHHHHHHHhCCCccceECCC-CCEEEEEeHHHHHHHHhccCCcccccccccccccchHHHHHHcCCC
Confidence 356789999999 99999988999999999765 7999999999997432111 00 0013
Q ss_pred hhhhhcCCceEEcCCCCHHHHHHHHHhcCCceEEEEEEeCCCCCCCCCCceeeeecHHHHHH
Q psy4847 113 LCQFYQNSCYFVFEDTTLDVLLKQFKEGIKGHMAFVHRVNNEGEGDPFYETVGLITLEDVIE 174 (396)
Q Consensus 113 v~~~~~~~v~~V~~dt~L~~~L~~f~~~~~~h~avV~~~~~~~~~De~g~~vGIVTleDIiE 174 (396)
+.+++.++++++.+++++.+++..|.+. ..+.++|+ |+ |+++|+||..|+++
T Consensus 80 v~~~~~~~~~~v~~~~~l~~~~~~~~~~-~~~~~~V~--------~~-~~~iGvit~~dl~~ 131 (132)
T cd04636 80 VEEIMTKKVITVDEDTTIEDVARIMSKK-NIKRLPVV--------DD-GKLVGIISRGDIIR 131 (132)
T ss_pred HHHhccCCceEECCCCcHHHHHHHHHHC-CCCeeEEE--------EC-CEEEEEEEHHHhhc
Confidence 4444557889999999999999999985 67777787 66 99999999999985
No 42
>cd04621 CBS_pair_8 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera
Probab=99.22 E-value=9.9e-11 Score=101.27 Aligned_cols=107 Identities=23% Similarity=0.228 Sum_probs=86.6
Q ss_pred CEEEEeCCCChhHHHHHHHHHcCCcEEEEEeCCCCcEEEEEEhhhhcccCCcc---------------------------
Q psy4847 54 DVYMLSYDAILDFETVSEIMKSGYSRIPVYEDRRTNIVTMFYIKDLALVDPDD--------------------------- 106 (396)
Q Consensus 54 dv~~l~~d~~l~~e~i~~i~~~g~sriPV~~~~~~~IVGiL~vkDLl~~~~~~--------------------------- 106 (396)
++.+++.++++. +++..|.+.+++.+||++++ ++++|+++.+||+......
T Consensus 2 ~~~~v~~~~~~~-~a~~~~~~~~~~~l~V~d~~-~~~~Giv~~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (135)
T cd04621 2 DIATVHPEHSLL-HVVDEMEKNGVGRVIVVDDN-GKPVGVITYRDLAFAEFEDNERGLPKKSIKMKRKAGQKRYRYVKEV 79 (135)
T ss_pred CceEeCCCCcHH-HHHHHHHHcCCCcceEECCC-CCEEEEEeHHHHHHHhhcccccccchhhhhhhhhcccccccccccc
Confidence 467789999999 99999999999999999765 8999999999997532211
Q ss_pred ccchhhhhhhhcCCceEEcCCCCHHHHHHHHHhcCCceEEEEEEeCCCCCCCCCCceeeeecHHHHHHH
Q psy4847 107 NTPLKTLCQFYQNSCYFVFEDTTLDVLLKQFKEGIKGHMAFVHRVNNEGEGDPFYETVGLITLEDVIEE 175 (396)
Q Consensus 107 ~~~l~~v~~~~~~~v~~V~~dt~L~~~L~~f~~~~~~h~avV~~~~~~~~~De~g~~vGIVTleDIiEe 175 (396)
..++.++ +..++++|.+++++.++++.|.++ +.+.++|+ ++ |+++|+||..||+++
T Consensus 80 ~~~v~~~---~~~~~~~v~~~~~l~~~~~~~~~~-~~~~l~Vv--------~~-~~~~Gvit~~di~~~ 135 (135)
T cd04621 80 PLVAEDI---MTEEIITVSPNDDVVDAAKLMLEA-NISGLPVV--------DN-DNIVGVITKTDICRE 135 (135)
T ss_pred cccHHHh---cCCCCeEECCCCCHHHHHHHHHHc-CCCEEEEE--------eC-CEEEEEEEHHHHhhC
Confidence 1234444 457888999999999999999985 67667776 55 899999999999863
No 43
>cd04610 CBS_pair_ParBc_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with a ParBc (ParB-like nuclease) domain downstream. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=99.22 E-value=2.2e-10 Score=93.25 Aligned_cols=104 Identities=21% Similarity=0.263 Sum_probs=86.5
Q ss_pred CEEEEeCCCChhHHHHHHHHHcCCcEEEEEeCCCCcEEEEEEhhhhcccCCccccchhhhhhhhcCCceEEcCCCCHHHH
Q psy4847 54 DVYMLSYDAILDFETVSEIMKSGYSRIPVYEDRRTNIVTMFYIKDLALVDPDDNTPLKTLCQFYQNSCYFVFEDTTLDVL 133 (396)
Q Consensus 54 dv~~l~~d~~l~~e~i~~i~~~g~sriPV~~~~~~~IVGiL~vkDLl~~~~~~~~~l~~v~~~~~~~v~~V~~dt~L~~~ 133 (396)
++..++.+.++. ++++.|.+.+++++||+++ ++++|+++.+||+...+ ..++.+++ ..++.++++++++.++
T Consensus 3 ~~~~v~~~~~~~-~~~~~~~~~~~~~~~v~d~--~~~~g~v~~~~l~~~~~--~~~~~~~~---~~~~~~v~~~~~l~~~ 74 (107)
T cd04610 3 DVITVSPDNTVK-DVIKLIKETGHDGFPVVDN--GKVVGIVSARDLLGKDP--DETVEEIM---SKDLVVAVPEMDIMDA 74 (107)
T ss_pred CcEEECCCCcHH-HHHHHHHHcCCCeeeEeEC--CEEEEEEEHHHhhccCc--cccHHHhC---CCCCeEECCCCCHHHH
Confidence 467889999999 9999998888999999975 78999999999986432 22455554 4678899999999999
Q ss_pred HHHHHhcCCceEEEEEEeCCCCCCCCCCceeeeecHHHHHH
Q psy4847 134 LKQFKEGIKGHMAFVHRVNNEGEGDPFYETVGLITLEDVIE 174 (396)
Q Consensus 134 L~~f~~~~~~h~avV~~~~~~~~~De~g~~vGIVTleDIiE 174 (396)
++.|.+. +.+.++|+ |+.|+++|+||..||++
T Consensus 75 ~~~~~~~-~~~~~~Vv--------~~~g~~~Gvi~~~di~~ 106 (107)
T cd04610 75 ARVMFRT-GISKLPVV--------DENNNLVGIITNTDVIR 106 (107)
T ss_pred HHHHHHh-CCCeEeEE--------CCCCeEEEEEEHHHhhc
Confidence 9999985 66777777 77789999999999975
No 44
>cd04601 CBS_pair_IMPDH This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the inosine 5' monophosphate dehydrogenase (IMPDH) protein. IMPDH is an essential enzyme that catalyzes the first step unique to GTP synthesis, playing a key role in the regulation of cell proliferation and differentiation. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain in IMPDH have been associated with retinitis pigmentosa.
Probab=99.22 E-value=1.9e-10 Score=94.02 Aligned_cols=106 Identities=25% Similarity=0.284 Sum_probs=86.1
Q ss_pred CEEEEeCCCChhHHHHHHHHHcCCcEEEEEeCCCCcEEEEEEhhhhcccCCccccchhhhhhhhcCCceEEcC-CCCHHH
Q psy4847 54 DVYMLSYDAILDFETVSEIMKSGYSRIPVYEDRRTNIVTMFYIKDLALVDPDDNTPLKTLCQFYQNSCYFVFE-DTTLDV 132 (396)
Q Consensus 54 dv~~l~~d~~l~~e~i~~i~~~g~sriPV~~~~~~~IVGiL~vkDLl~~~~~~~~~l~~v~~~~~~~v~~V~~-dt~L~~ 132 (396)
++..++.+.++. ++++.|.+.+++++||++++ ++++|+++.+|++...+ ...++.+++ ..++.++.. ++++.+
T Consensus 3 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~V~d~~-~~~~G~v~~~~l~~~~~-~~~~v~~~~---~~~~~~~~~~~~~l~~ 76 (110)
T cd04601 3 DPITVSPDATVA-EALELMAEYGISGLPVVDDD-GKLVGIVTNRDLRFETD-LDKPVSEVM---TPENLLTTVEGTSLEE 76 (110)
T ss_pred CCeEeCCCCcHH-HHHHHHHHcCCceEEEEcCC-CEEEEEEEhhHeeeccc-CCCCHHHhc---ccCceEEecCCCCHHH
Confidence 356788999999 99999999999999999765 79999999999976533 234566655 355566666 999999
Q ss_pred HHHHHHhcCCceEEEEEEeCCCCCCCCCCceeeeecHHHHHH
Q psy4847 133 LLKQFKEGIKGHMAFVHRVNNEGEGDPFYETVGLITLEDVIE 174 (396)
Q Consensus 133 ~L~~f~~~~~~h~avV~~~~~~~~~De~g~~vGIVTleDIiE 174 (396)
++..|.+. +.+.++|+ |+.|+++|+||..|+++
T Consensus 77 ~~~~~~~~-~~~~~~Vv--------~~~~~~~Gvi~~~dil~ 109 (110)
T cd04601 77 ALELLHEH-KIEKLPVV--------DDEGKLKGLITVKDIEK 109 (110)
T ss_pred HHHHHHHh-CCCeeeEE--------cCCCCEEEEEEhhhhhc
Confidence 99999995 67777777 77789999999999975
No 45
>cd04643 CBS_pair_30 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.21 E-value=1.1e-10 Score=96.43 Aligned_cols=105 Identities=17% Similarity=0.258 Sum_probs=84.7
Q ss_pred CEEEEeCCCChhHHHHHHHHHcCCcEEEEEeCCCCcEEEEEEhhhhcccCCcc---------ccchhhhhhhhcCCceEE
Q psy4847 54 DVYMLSYDAILDFETVSEIMKSGYSRIPVYEDRRTNIVTMFYIKDLALVDPDD---------NTPLKTLCQFYQNSCYFV 124 (396)
Q Consensus 54 dv~~l~~d~~l~~e~i~~i~~~g~sriPV~~~~~~~IVGiL~vkDLl~~~~~~---------~~~l~~v~~~~~~~v~~V 124 (396)
++.+++.++++. ++++.|.+.+++.+||++++ ++++|+++.+|++...... ..++.++ +.+++.++
T Consensus 2 ~~~~v~~~~~~~-~~~~~~~~~~~~~~~V~d~~-~~~~Giv~~~dl~~~~~~~~~~~~~~~~~~~v~~~---~~~~~~~v 76 (116)
T cd04643 2 EVAYVQDTNTLR-HALLVLTKHGYSAIPVLDKE-GKYVGTISLTDILWKLKGLENLDLERLVDLKVIDV---MNTDVPVI 76 (116)
T ss_pred CcEEECCCCcHH-HHHHHHHHCCCceeeeECCC-CcEEEEEeHHHHHHHhhccCchhHHHHhCCcHHHH---hcCCCcee
Confidence 477899999999 99999999999999999764 7899999999997532210 2244444 45778999
Q ss_pred cCCCCHHHHHHHHHhcCCceEEEEEEeCCCCCCCCCCceeeeecHHHHHH
Q psy4847 125 FEDTTLDVLLKQFKEGIKGHMAFVHRVNNEGEGDPFYETVGLITLEDVIE 174 (396)
Q Consensus 125 ~~dt~L~~~L~~f~~~~~~h~avV~~~~~~~~~De~g~~vGIVTleDIiE 174 (396)
.+++++.+++..|.+. . .++|+ |++|+++|+||..|+++
T Consensus 77 ~~~~~l~~a~~~~~~~-~--~~~Vv--------~~~~~~~Gvit~~dil~ 115 (116)
T cd04643 77 IDDADIEEILHLLIDQ-P--FLPVV--------DDDGIFIGIITRREILK 115 (116)
T ss_pred cCCCCHHHHHHHHhcC-C--ceeEE--------eCCCeEEEEEEHHHhhc
Confidence 9999999999999873 3 45666 77789999999999975
No 46
>cd04801 CBS_pair_M50_like This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with the metalloprotease peptidase M50. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=99.20 E-value=7.5e-11 Score=97.66 Aligned_cols=109 Identities=20% Similarity=0.209 Sum_probs=85.8
Q ss_pred CEEEEeCCCChhHHHHHHHHHcC-CcEEEEEeCCCCcEEEEEEhhhhcccCCc--cccchhhhhhhhcCCceEEcCCCCH
Q psy4847 54 DVYMLSYDAILDFETVSEIMKSG-YSRIPVYEDRRTNIVTMFYIKDLALVDPD--DNTPLKTLCQFYQNSCYFVFEDTTL 130 (396)
Q Consensus 54 dv~~l~~d~~l~~e~i~~i~~~g-~sriPV~~~~~~~IVGiL~vkDLl~~~~~--~~~~l~~v~~~~~~~v~~V~~dt~L 130 (396)
++..++.++++. ++++.|.+.+ ++.+||++++ ++++|+++.+||+..... ...++.+++... .+++.+.+++++
T Consensus 2 ~~~~~~~~~~l~-~~~~~~~~~~~~~~~~V~d~~-~~~~G~v~~~dl~~~~~~~~~~~~v~~~~~~~-~~~~~v~~~~~l 78 (114)
T cd04801 2 DFPTVPAHLTLR-EFVREYVLGSNQRRFVVVDNE-GRYVGIISLADLRAIPTSQWAQTTVIQVMTPA-AKLVTVLSEESL 78 (114)
T ss_pred CcceeCCCCCHH-HHHHHHhccCCceeEEEEcCC-CcEEEEEEHHHHHHHHHhhccccchhhhhccc-ccceEECCCCcH
Confidence 366789999999 9998887665 8999999765 789999999999764321 134566665421 235689999999
Q ss_pred HHHHHHHHhcCCceEEEEEEeCCCCCCCCCCceeeeecHHHHHH
Q psy4847 131 DVLLKQFKEGIKGHMAFVHRVNNEGEGDPFYETVGLITLEDVIE 174 (396)
Q Consensus 131 ~~~L~~f~~~~~~h~avV~~~~~~~~~De~g~~vGIVTleDIiE 174 (396)
.++++.|.+. +.+.++|+ |+.|+++|+||..||++
T Consensus 79 ~~a~~~~~~~-~~~~l~Vv--------~~~~~~~Gvl~~~di~~ 113 (114)
T cd04801 79 AEVLKLLEEQ-GLDELAVV--------EDSGQVIGLITEADLLR 113 (114)
T ss_pred HHHHHHHHHC-CCCeeEEE--------cCCCcEEEEEeccceec
Confidence 9999999995 67777777 66789999999999864
No 47
>cd04639 CBS_pair_26 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.20 E-value=1.3e-10 Score=95.36 Aligned_cols=107 Identities=24% Similarity=0.311 Sum_probs=86.6
Q ss_pred CEEEEeCCCChhHHHHHHHHHcCCcEEEEEeCCCCcEEEEEEhhhhcccC--CccccchhhhhhhhcCCceEEcCCCCHH
Q psy4847 54 DVYMLSYDAILDFETVSEIMKSGYSRIPVYEDRRTNIVTMFYIKDLALVD--PDDNTPLKTLCQFYQNSCYFVFEDTTLD 131 (396)
Q Consensus 54 dv~~l~~d~~l~~e~i~~i~~~g~sriPV~~~~~~~IVGiL~vkDLl~~~--~~~~~~l~~v~~~~~~~v~~V~~dt~L~ 131 (396)
++..++.++++. ++.+.+.+.++.++||++++ ++++|+++.+|++... .....++.+++ .++++++++++++.
T Consensus 2 ~~~~v~~~~~i~-e~~~~~~~~~~~~~~V~~~~-~~~~G~v~~~~l~~~~~~~~~~~~v~~~~---~~~~~~i~~~~~~~ 76 (111)
T cd04639 2 HFETLSPADTLD-DAADALLATTQHEFPVVDGD-GHLVGLLTRDDLIRALAEGGPDAPVRGVM---RRDFPTVSPSATLD 76 (111)
T ss_pred CceEcCCCCcHH-HHHHHHHHcCCCcceEECCC-CcEEEEeeHHHHHHHHHhcCCCCcHHHHh---cCCCcEECCCCcHH
Confidence 356788999999 99999888999999999765 7899999999997431 11223555554 47889999999999
Q ss_pred HHHHHHHhcCCceEEEEEEeCCCCCCCCCCceeeeecHHHHHH
Q psy4847 132 VLLKQFKEGIKGHMAFVHRVNNEGEGDPFYETVGLITLEDVIE 174 (396)
Q Consensus 132 ~~L~~f~~~~~~h~avV~~~~~~~~~De~g~~vGIVTleDIiE 174 (396)
++++.|.+. ..+.++|+ |+.|+++|+||..|+.+
T Consensus 77 ~~~~~~~~~-~~~~~~Vv--------~~~~~~~G~it~~dl~~ 110 (111)
T cd04639 77 AVLRLMQQG-GAPAVPVV--------DGSGRLVGLVTLENVGE 110 (111)
T ss_pred HHHHHHHhc-CCceeeEE--------cCCCCEEEEEEHHHhhc
Confidence 999999985 66767776 66689999999999975
No 48
>PRK07807 inosine 5-monophosphate dehydrogenase; Validated
Probab=99.20 E-value=1.4e-10 Score=120.93 Aligned_cols=120 Identities=17% Similarity=0.116 Sum_probs=102.6
Q ss_pred ccccccccccccCCCEEEEeCCCChhHHHHHHHHHcCCcEEEEEeCCCCcEEEEEEhhhhcccCCccccchhhhhhhhcC
Q psy4847 40 LRRKIVGDVMTKLEDVYMLSYDAILDFETVSEIMKSGYSRIPVYEDRRTNIVTMFYIKDLALVDPDDNTPLKTLCQFYQN 119 (396)
Q Consensus 40 l~~~tV~dIMtp~~dv~~l~~d~~l~~e~i~~i~~~g~sriPV~~~~~~~IVGiL~vkDLl~~~~~~~~~l~~v~~~~~~ 119 (396)
++..++.++|++. ++++++++++. ++.+.|.+++++.+||++++ ++++|+|+.+||...++. .++.++| ..
T Consensus 86 l~~VKv~~iMi~~--pvtv~~d~tv~-eA~~~m~~~~~s~l~VVD~~-gklvGIVT~rDL~~~~~~--~~V~diM---t~ 156 (479)
T PRK07807 86 VAWVKSRDLVFDT--PVTLSPDDTVG-DALALLPKRAHGAVVVVDEE-GRPVGVVTEADCAGVDRF--TQVRDVM---ST 156 (479)
T ss_pred HhhcccccccccC--CeEECCCCCHH-HHHHHHHhcCCceEEEECCC-CeEEEEEeHHHHhcCccC--CCHHHhc---cC
Confidence 4466688999854 78999999999 99999999999999999865 789999999999765433 4577666 47
Q ss_pred CceEEcCCCCHHHHHHHHHhcCCceEEEEEEeCCCCCCCCCCceeeeecHHHHHHHHH
Q psy4847 120 SCYFVFEDTTLDVLLKQFKEGIKGHMAFVHRVNNEGEGDPFYETVGLITLEDVIEELI 177 (396)
Q Consensus 120 ~v~~V~~dt~L~~~L~~f~~~~~~h~avV~~~~~~~~~De~g~~vGIVTleDIiEeli 177 (396)
+++++++++++.+++..|.+. +.+.++|+ |+.|+++|+||..||+....
T Consensus 157 ~~itV~~d~sL~eAl~lM~~~-~i~~LPVV--------D~~g~lvGIIT~~DIl~~~~ 205 (479)
T PRK07807 157 DLVTLPAGTDPREAFDLLEAA-RVKLAPVV--------DADGRLVGVLTRTGALRATI 205 (479)
T ss_pred CceEECCCCcHHHHHHHHHhc-CCCEEEEE--------cCCCeEEEEEEHHHHHHHhh
Confidence 899999999999999999995 77777887 77789999999999999765
No 49
>cd04635 CBS_pair_22 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.20 E-value=1.7e-10 Score=96.40 Aligned_cols=107 Identities=15% Similarity=0.261 Sum_probs=86.7
Q ss_pred CEEEEeCCCChhHHHHHHHHHcCCcEEEEEeCCCCcEEEEEEhhhhcccCC------c-------cccchhhhhhhhcCC
Q psy4847 54 DVYMLSYDAILDFETVSEIMKSGYSRIPVYEDRRTNIVTMFYIKDLALVDP------D-------DNTPLKTLCQFYQNS 120 (396)
Q Consensus 54 dv~~l~~d~~l~~e~i~~i~~~g~sriPV~~~~~~~IVGiL~vkDLl~~~~------~-------~~~~l~~v~~~~~~~ 120 (396)
++++++.+.++. ++++.|.+.+++.+||++++ ++++|+++.+||+.... . ...++.++ +..+
T Consensus 2 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~V~d~~-~~~~G~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~ 76 (122)
T cd04635 2 EPVTCTPDDPVS-KVWDLMLESGFTGLPVVQKA-GELIGIITRRDIIRAGSVRTSVEDQQRTQTKASPTVEKI---MSTP 76 (122)
T ss_pred CCEEeCCCCcHH-HHHHHHHHcCCCcccEECCC-CcEEEEEEcHHHHhhccccccccchhhhhhhccCcHHHH---hcCC
Confidence 467889999999 99999998999999999764 89999999999974210 0 12234444 4577
Q ss_pred ceEEcCCCCHHHHHHHHHhcCCceEEEEEEeCCCCCCCCCCceeeeecHHHHHH
Q psy4847 121 CYFVFEDTTLDVLLKQFKEGIKGHMAFVHRVNNEGEGDPFYETVGLITLEDVIE 174 (396)
Q Consensus 121 v~~V~~dt~L~~~L~~f~~~~~~h~avV~~~~~~~~~De~g~~vGIVTleDIiE 174 (396)
+..+++++++.+++..|.+. +.+.++|+ |+.|+++|+||.+|+++
T Consensus 77 ~~~v~~~~~l~~~~~~~~~~-~~~~~~Vv--------d~~g~~~Gvit~~dl~~ 121 (122)
T cd04635 77 VYSVTPDDSIATAVELMLEH-DIGRLPVV--------NEKDQLVGIVDRHDVLK 121 (122)
T ss_pred CeeECCCCCHHHHHHHHHHc-CCCeeeEE--------cCCCcEEEEEEhHHhhc
Confidence 89999999999999999995 67777777 77799999999999986
No 50
>cd04627 CBS_pair_14 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.20 E-value=1.9e-10 Score=96.79 Aligned_cols=110 Identities=15% Similarity=0.093 Sum_probs=84.5
Q ss_pred CEEEEeCCCChhHHHHHHHHHcCCcEEEEEeCCCCcEEEEEEhhhhcccC---Cccccchh-------hhhhhhcCCceE
Q psy4847 54 DVYMLSYDAILDFETVSEIMKSGYSRIPVYEDRRTNIVTMFYIKDLALVD---PDDNTPLK-------TLCQFYQNSCYF 123 (396)
Q Consensus 54 dv~~l~~d~~l~~e~i~~i~~~g~sriPV~~~~~~~IVGiL~vkDLl~~~---~~~~~~l~-------~v~~~~~~~v~~ 123 (396)
++..++.++++. ++++.|.+.++.++||++++.++++|+++.+||+... ........ .+...+.+++.+
T Consensus 2 ~~~~v~~~~~i~-~a~~~~~~~~~~~~~V~d~~~~~~~Giv~~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (123)
T cd04627 2 PFIPVPSTASLF-QAIEILGSGGIHRVAVTEEESGEVIGILSQRRLVEFLWENARSFPGLDPLYPIPLRDLTIGTSDVIS 80 (123)
T ss_pred CceecCCCCCHH-HHHHHHhhCCcceEEEEeCCCCcEEEEEEHHHHHHHHHHhHHhccchhhhhhhhhhhcccCcCCceE
Confidence 356789999999 9999999899999999976436899999999986421 11000000 111233578889
Q ss_pred EcCCCCHHHHHHHHHhcCCceEEEEEEeCCCCCCCCCCceeeeecHHHHH
Q psy4847 124 VFEDTTLDVLLKQFKEGIKGHMAFVHRVNNEGEGDPFYETVGLITLEDVI 173 (396)
Q Consensus 124 V~~dt~L~~~L~~f~~~~~~h~avV~~~~~~~~~De~g~~vGIVTleDIi 173 (396)
+.+++++.++++.|.+. +.+.++|+ |++|+++|+||+.||-
T Consensus 81 v~~~~~l~~a~~~m~~~-~~~~lpVv--------d~~~~~vGiit~~di~ 121 (123)
T cd04627 81 INGDQPLIDALHLMHNE-GISSVAVV--------DNQGNLIGNISVTDVR 121 (123)
T ss_pred eCCCCCHHHHHHHHHHc-CCceEEEE--------CCCCcEEEEEeHHHhh
Confidence 99999999999999995 77777777 7789999999999974
No 51
>cd04800 CBS_pair_CAP-ED_DUF294_PBI_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with either the CAP_ED (cAMP receptor protein effector domain) family of transcription factors and the DUF294 domain or the PB1 (Phox and Bem1p) domain. Members of CAP_ED, include CAP which binds cAMP, FNR (fumarate and nitrate reductase) which uses an iron-sulfur cluster to sense oxygen, and CooA a heme containing CO sensor. In all cases binding of the effector leads to conformational changes and the ability to activate transcription. DUF294 is a putative nucleotidyltransferase with a conserved DxD motif. The PB1 domain adopts a beta-grasp fold, similar to that found in ubiquitin and Ras-binding domains. A motif, variously termed OPR, PC and AID, represents the most conserved region of the majority of PB1 domains, and is necessary for PB1 domain function. This function is the formation of PB1 domain heterodimers, although not all PB1 domain pa
Probab=99.20 E-value=2.2e-10 Score=94.05 Aligned_cols=105 Identities=22% Similarity=0.190 Sum_probs=84.9
Q ss_pred CEEEEeCCCChhHHHHHHHHHcCCcEEEEEeCCCCcEEEEEEhhhhcc--cCCc--cccchhhhhhhhcCCceEEcCCCC
Q psy4847 54 DVYMLSYDAILDFETVSEIMKSGYSRIPVYEDRRTNIVTMFYIKDLAL--VDPD--DNTPLKTLCQFYQNSCYFVFEDTT 129 (396)
Q Consensus 54 dv~~l~~d~~l~~e~i~~i~~~g~sriPV~~~~~~~IVGiL~vkDLl~--~~~~--~~~~l~~v~~~~~~~v~~V~~dt~ 129 (396)
++..++.+.++. ++.+.|.+.+++++||+++ ++++|+++.+|++. .... ...++.++ +.+++++++++++
T Consensus 2 ~~~~v~~~~~~~-~~~~~~~~~~~~~i~V~~~--~~~~G~v~~~~l~~~~~~~~~~~~~~i~~~---~~~~~~~v~~~~~ 75 (111)
T cd04800 2 PPVTCSPDTTIR-EAARLMTEHRVSSLLVVDD--GRLVGIVTDRDLRNRVVAEGLDPDTPVSEV---MTAPPITIPPDAT 75 (111)
T ss_pred CCEEECCCCcHH-HHHHHHHHcCCCeEEEEEC--CEEEEEEEhHHHHHHHhccCCCccCCHHHH---hCCCCeEECCCCc
Confidence 356789999999 9999998899999999976 79999999999874 2111 12344444 4578999999999
Q ss_pred HHHHHHHHHhcCCceEEEEEEeCCCCCCCCCCceeeeecHHHHHH
Q psy4847 130 LDVLLKQFKEGIKGHMAFVHRVNNEGEGDPFYETVGLITLEDVIE 174 (396)
Q Consensus 130 L~~~L~~f~~~~~~h~avV~~~~~~~~~De~g~~vGIVTleDIiE 174 (396)
+.++++.|.+. ..+.++|+ ++ |+++|+||.+||++
T Consensus 76 l~~~~~~~~~~-~~~~~~Vv--------~~-~~~~Giit~~di~~ 110 (111)
T cd04800 76 VFEALLLMLER-GIHHLPVV--------DD-GRLVGVISATDLLR 110 (111)
T ss_pred HHHHHHHHHHc-CCCeeeEe--------EC-CEEEEEEEHHHhhc
Confidence 99999999995 66666776 55 89999999999974
No 52
>cd04615 CBS_pair_2 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera
Probab=99.19 E-value=2.3e-10 Score=94.22 Aligned_cols=106 Identities=13% Similarity=0.208 Sum_probs=85.5
Q ss_pred EEEEeCCCChhHHHHHHHHHcCCcEEEEEeCCCCcEEEEEEhhhhccc--CCc--cccchhhhhhhhcCCceEEcCCCCH
Q psy4847 55 VYMLSYDAILDFETVSEIMKSGYSRIPVYEDRRTNIVTMFYIKDLALV--DPD--DNTPLKTLCQFYQNSCYFVFEDTTL 130 (396)
Q Consensus 55 v~~l~~d~~l~~e~i~~i~~~g~sriPV~~~~~~~IVGiL~vkDLl~~--~~~--~~~~l~~v~~~~~~~v~~V~~dt~L 130 (396)
...+..++++. ++++.+.+.++.++||++++ ++++|+++.+||+.. ... ...++.++ +..++.++.+++++
T Consensus 3 ~~~~~~~~~~~-~~~~~~~~~~~~~~~vvd~~-~~~~G~v~~~dl~~~~~~~~~~~~~~i~~~---~~~~~~~v~~~~~l 77 (113)
T cd04615 3 PSCVVLNTDIA-RAVAEMYTSGSRALPVVDDK-KRLVGIITRYDVLSYALESEELKDAKVREV---MNSPVITIDANDSI 77 (113)
T ss_pred CEEeeCCCcHH-HHHHHHHHcCCceEeEEcCC-CCEEEEEEHHHHHHhhhhhhhhcCCcHHHh---ccCCceEECCCCcH
Confidence 35678999999 99999999999999999765 789999999999752 211 12345554 45788999999999
Q ss_pred HHHHHHHHhcCCceEEEEEEeCCCCCCCCCCceeeeecHHHHHH
Q psy4847 131 DVLLKQFKEGIKGHMAFVHRVNNEGEGDPFYETVGLITLEDVIE 174 (396)
Q Consensus 131 ~~~L~~f~~~~~~h~avV~~~~~~~~~De~g~~vGIVTleDIiE 174 (396)
.++++.|.+. +.+.++|+ |+.|+++|+||..|+++
T Consensus 78 ~~~~~~~~~~-~~~~~~Vv--------d~~g~~~Gvvt~~dl~~ 112 (113)
T cd04615 78 AKARWLMSNN-NISRLPVL--------DDKGKVGGIVTEDDILR 112 (113)
T ss_pred HHHHHHHHHc-CCCeeeEE--------CCCCeEEEEEEHHHhhc
Confidence 9999999985 66666676 77789999999999874
No 53
>cd04606 CBS_pair_Mg_transporter This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domain in the magnesium transporter, MgtE. MgtE and its homologs are found in eubacteria, archaebacteria, and eukaryota. Members of this family transport Mg2+ or other divalent cations into the cell via two highly conserved aspartates. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=99.19 E-value=1.9e-10 Score=94.62 Aligned_cols=103 Identities=22% Similarity=0.317 Sum_probs=83.2
Q ss_pred EeCCCChhHHHHHHHHHcC-----CcEEEEEeCCCCcEEEEEEhhhhcccCCccccchhhhhhhhcCCceEEcCCCCHHH
Q psy4847 58 LSYDAILDFETVSEIMKSG-----YSRIPVYEDRRTNIVTMFYIKDLALVDPDDNTPLKTLCQFYQNSCYFVFEDTTLDV 132 (396)
Q Consensus 58 l~~d~~l~~e~i~~i~~~g-----~sriPV~~~~~~~IVGiL~vkDLl~~~~~~~~~l~~v~~~~~~~v~~V~~dt~L~~ 132 (396)
+..+.++. ++++.|.+++ +..+||++++ ++++|+|+.+|++.... ..++.+++ ..++.++++++++.+
T Consensus 2 ~~~~~~~~-~~~~~~~~~~~~~~~~~~~~vvd~~-~~~~G~v~~~~l~~~~~--~~~v~~~~---~~~~~~i~~~~~~~~ 74 (109)
T cd04606 2 VREDWTVG-EALEYLRRNADDPETIYYIYVVDEE-GRLLGVVSLRDLLLADP--DTPVSDIM---DTDVISVSADDDQEE 74 (109)
T ss_pred ccccCcHH-HHHHHHHhccCcccceeEEEEECCC-CCEEEEEEHHHHhcCCC--cchHHHHh---CCCCeEEcCCCCHHH
Confidence 45677888 8998888777 4678999765 78999999999986432 23455554 577899999999999
Q ss_pred HHHHHHhcCCceEEEEEEeCCCCCCCCCCceeeeecHHHHHHHH
Q psy4847 133 LLKQFKEGIKGHMAFVHRVNNEGEGDPFYETVGLITLEDVIEEL 176 (396)
Q Consensus 133 ~L~~f~~~~~~h~avV~~~~~~~~~De~g~~vGIVTleDIiEel 176 (396)
+++.|.+. ..+.++|+ |++|+++|+||..|+++++
T Consensus 75 ~~~~~~~~-~~~~~~Vv--------~~~~~~~Gvit~~dll~~~ 109 (109)
T cd04606 75 VARLFEKY-DLLALPVV--------DEEGRLVGIITVDDVIDVI 109 (109)
T ss_pred HHHHHHHc-CCceeeeE--------CCCCcEEEEEEhHHhhhhC
Confidence 99999985 67777777 7789999999999999763
No 54
>cd04604 CBS_pair_KpsF_GutQ_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with KpsF/GutQ domains in the API [A5P (D-arabinose 5-phosphate) isomerase] protein. These APIs catalyze the conversion of the pentose pathway intermediate D-ribulose 5-phosphate into A5P, a precursor of 3-deoxy-D-manno-octulosonate, which is an integral carbohydrate component of various glycolipids coating the surface of the outer membrane of Gram-negative bacteria, including lipopolysaccharide and many group 2 K-antigen capsules. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other funct
Probab=99.19 E-value=2.1e-10 Score=94.35 Aligned_cols=107 Identities=19% Similarity=0.214 Sum_probs=85.9
Q ss_pred CEEEEeCCCChhHHHHHHHHHcCCcEEEEEeCCCCcEEEEEEhhhhcccCCc----cccchhhhhhhhcCCceEEcCCCC
Q psy4847 54 DVYMLSYDAILDFETVSEIMKSGYSRIPVYEDRRTNIVTMFYIKDLALVDPD----DNTPLKTLCQFYQNSCYFVFEDTT 129 (396)
Q Consensus 54 dv~~l~~d~~l~~e~i~~i~~~g~sriPV~~~~~~~IVGiL~vkDLl~~~~~----~~~~l~~v~~~~~~~v~~V~~dt~ 129 (396)
++..++.++++. ++++.+.+.+++++||++++ ++++|+|+.++++..... ...++.++ +..++.+++++++
T Consensus 3 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~v~d~~-~~~~G~v~~~~i~~~~~~~~~~~~~~v~~~---~~~~~~~v~~~~~ 77 (114)
T cd04604 3 ALPLVSPDTSLK-DALLEMSRKGLGMTAVVDED-GRLVGIFTDGDLRRALEKGLDILTLPVADV---MTRNPKTIDPDAL 77 (114)
T ss_pred cccccCCCCcHH-HHHHHHHhcCccEEEEEcCC-CCEEEEechHHHHHHHhccCccccCCHHHh---hccCCeEECCCCc
Confidence 456788999999 99999988899999999765 789999999998643211 11244544 4577889999999
Q ss_pred HHHHHHHHHhcCCceEEEEEEeCCCCCCCCCCceeeeecHHHHHH
Q psy4847 130 LDVLLKQFKEGIKGHMAFVHRVNNEGEGDPFYETVGLITLEDVIE 174 (396)
Q Consensus 130 L~~~L~~f~~~~~~h~avV~~~~~~~~~De~g~~vGIVTleDIiE 174 (396)
+.++++.|.+. ..+.++|+ |+.|+++|+||..||+.
T Consensus 78 ~~~~~~~~~~~-~~~~~~Vv--------~~~~~~iG~it~~di~~ 113 (114)
T cd04604 78 AAEALELMEEN-KITALPVV--------DDNGRPVGVLHIHDLLR 113 (114)
T ss_pred HHHHHHHHHHc-CCCEEEEE--------CCCCCEEEEEEHHHhhc
Confidence 99999999985 67777777 76799999999999974
No 55
>cd04583 CBS_pair_ABC_OpuCA_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with the ABC transporter OpuCA. OpuCA is the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment but the function of the CBS domains in OpuCA remains unknown. In the related ABC transporter, OpuA, the tandem CBS domains have been shown to function as sensors for ionic strength, whereby they control the transport activity through an electronic switching mechanism. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. They are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyz
Probab=99.18 E-value=3.3e-10 Score=92.41 Aligned_cols=106 Identities=16% Similarity=0.208 Sum_probs=86.9
Q ss_pred CEEEEeCCCChhHHHHHHHHHcCCcEEEEEeCCCCcEEEEEEhhhhcccCCccccchhhhhhhhcCCceEEcCCCCHHHH
Q psy4847 54 DVYMLSYDAILDFETVSEIMKSGYSRIPVYEDRRTNIVTMFYIKDLALVDPDDNTPLKTLCQFYQNSCYFVFEDTTLDVL 133 (396)
Q Consensus 54 dv~~l~~d~~l~~e~i~~i~~~g~sriPV~~~~~~~IVGiL~vkDLl~~~~~~~~~l~~v~~~~~~~v~~V~~dt~L~~~ 133 (396)
++..++.+.++. +++..|.+.++.++||++++ ++++|+++.+||+.... ...++..++ ...+.++++++++.++
T Consensus 3 ~~~~v~~~~~~~-~~~~~~~~~~~~~~~v~d~~-~~~~G~v~~~dl~~~~~-~~~~v~~~~---~~~~~~v~~~~~~~~~ 76 (109)
T cd04583 3 NPVTITPDRTLA-EAIKLMRDKKVDSLLVVDKD-NKLLGIVSLESLEQAYK-EAKSLEDIM---LEDVFTVQPDASLRDV 76 (109)
T ss_pred CCEEECCCCCHH-HHHHHHHHCCCceEEEEcCC-CcEEEEEEHHHHHHHhh-cCCcHhHhh---cCCceEECCCCcHHHH
Confidence 356788999999 99999999999999999765 78999999999975321 123556555 4678899999999999
Q ss_pred HHHHHhcCCceEEEEEEeCCCCCCCCCCceeeeecHHHHHH
Q psy4847 134 LKQFKEGIKGHMAFVHRVNNEGEGDPFYETVGLITLEDVIE 174 (396)
Q Consensus 134 L~~f~~~~~~h~avV~~~~~~~~~De~g~~vGIVTleDIiE 174 (396)
+..|.+. +.+.++|+ |+.|+++|+||.+|++.
T Consensus 77 ~~~~~~~-~~~~~~vv--------~~~g~~~Gvit~~~l~~ 108 (109)
T cd04583 77 LGLVLKR-GPKYVPVV--------DEDGKLVGLITRSSLVD 108 (109)
T ss_pred HHHHHHc-CCceeeEE--------CCCCeEEEEEehHHhhc
Confidence 9999985 66667777 77789999999999874
No 56
>cd04582 CBS_pair_ABC_OpuCA_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with the ABC transporter OpuCA. OpuCA is the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment but the function of the CBS domains in OpuCA remains unknown. In the related ABC transporter, OpuA, the tandem CBS domains have been shown to function as sensors for ionic strength, whereby they control the transport activity through an electronic switching mechanism. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. They are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzi
Probab=99.17 E-value=4e-10 Score=91.73 Aligned_cols=103 Identities=13% Similarity=0.026 Sum_probs=85.2
Q ss_pred EEEEeCCCChhHHHHHHHHHcCCcEEEEEeCCCCcEEEEEEhhhhcccCCccccchhhhhhhhcCCceEEcCCCCHHHHH
Q psy4847 55 VYMLSYDAILDFETVSEIMKSGYSRIPVYEDRRTNIVTMFYIKDLALVDPDDNTPLKTLCQFYQNSCYFVFEDTTLDVLL 134 (396)
Q Consensus 55 v~~l~~d~~l~~e~i~~i~~~g~sriPV~~~~~~~IVGiL~vkDLl~~~~~~~~~l~~v~~~~~~~v~~V~~dt~L~~~L 134 (396)
+..++.+.++. ++++.|.+.++..+||++++ ++++|+++.+||+.... .++.++ +.+++.++.+++++.+++
T Consensus 3 ~~~v~~~~~~~-~a~~~~~~~~~~~~~v~d~~-g~~~Giv~~~dl~~~~~---~~~~~~---~~~~~~~~~~~~~~~~~~ 74 (106)
T cd04582 3 PITVRPDDPLS-DALGLMDDSDLRALTVVDAD-GQPLGFVTRREAARASG---GCCGDH---AEPFKVTVSVDDDLRIVL 74 (106)
T ss_pred CcEecCCCcHH-HHHHHHHhcCCCEEEEECCC-CCEEEEEeHHHHHHhcc---cchhhh---cccCCEEECCCCCHHHHH
Confidence 56788999998 99999988999999999754 79999999999986432 134444 446778899999999999
Q ss_pred HHHHhcCCceEEEEEEeCCCCCCCCCCceeeeecHHHHHH
Q psy4847 135 KQFKEGIKGHMAFVHRVNNEGEGDPFYETVGLITLEDVIE 174 (396)
Q Consensus 135 ~~f~~~~~~h~avV~~~~~~~~~De~g~~vGIVTleDIiE 174 (396)
+.|.+. ....++|+ |+.|+++|+||..|++.
T Consensus 75 ~~~~~~-~~~~~~Vv--------~~~~~~~Gvi~~~~l~~ 105 (106)
T cd04582 75 SRMFAH-DMSWLPCV--------DEDGRYVGEVTQRSIAD 105 (106)
T ss_pred HHHHHC-CCCeeeEE--------CCCCcEEEEEEHHHhhc
Confidence 999995 77777777 77789999999999874
No 57
>cd04586 CBS_pair_BON_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the BON (bacterial OsmY and nodulation domain) domain. BON is a putative phospholipid-binding domain found in a family of osmotic shock protection proteins. It is also found in some secretins and a group of potential haemolysins. Its likely function is attachment to phospholipid membranes. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=99.17 E-value=1.4e-10 Score=99.44 Aligned_cols=106 Identities=20% Similarity=0.213 Sum_probs=86.0
Q ss_pred CEEEEeCCCChhHHHHHHHHHcCCcEEEEEeCCCCcEEEEEEhhhhcccCC--------------------------ccc
Q psy4847 54 DVYMLSYDAILDFETVSEIMKSGYSRIPVYEDRRTNIVTMFYIKDLALVDP--------------------------DDN 107 (396)
Q Consensus 54 dv~~l~~d~~l~~e~i~~i~~~g~sriPV~~~~~~~IVGiL~vkDLl~~~~--------------------------~~~ 107 (396)
++.+++.++++. ++++.|.+.++.++||++++ ++++|+++.+||+.... ...
T Consensus 3 ~~~~v~~~~~~~-~~~~~~~~~~~~~~~Vvd~~-~~~~Gvi~~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (135)
T cd04586 3 DVVTVSPETSVA-EAARLMLDNHISGLPVVDDD-GRLVGIVSEGDLLRRAELGTERRRARWLDLLAGAEELAAAFVRSHG 80 (135)
T ss_pred CCEEeCCCCCHH-HHHHHHHHcCCCCceEECCC-CCEEEEeeHHHHHHHhcccCcchhhhHHHHhcchHHHHHHHHHhcC
Confidence 367889999999 99999999999999999754 78999999999864210 011
Q ss_pred cchhhhhhhhcCCceEEcCCCCHHHHHHHHHhcCCceEEEEEEeCCCCCCCCCCceeeeecHHHHHH
Q psy4847 108 TPLKTLCQFYQNSCYFVFEDTTLDVLLKQFKEGIKGHMAFVHRVNNEGEGDPFYETVGLITLEDVIE 174 (396)
Q Consensus 108 ~~l~~v~~~~~~~v~~V~~dt~L~~~L~~f~~~~~~h~avV~~~~~~~~~De~g~~vGIVTleDIiE 174 (396)
.++.++ +..++.++++++++.+++..|.+. +.+.++|+ | .|+++|+||..||++
T Consensus 81 ~~v~~~---~~~~~~~v~~~~~~~~~~~~~~~~-~~~~l~Vv--------d-~g~~~Gvit~~di~~ 134 (135)
T cd04586 81 RKVADV---MTRPVVTVGEDTPLAEVAELMEEH-RIKRVPVV--------R-GGRLVGIVSRADLLR 134 (135)
T ss_pred CCHHHH---hCCCceEeCCCCcHHHHHHHHHHc-CCCccCEe--------c-CCEEEEEEEhHhhhc
Confidence 234444 457789999999999999999995 67777777 7 799999999999975
No 58
>cd04595 CBS_pair_DHH_polyA_Pol_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with an upstream DHH domain which performs a phosphoesterase function and a downstream polyA polymerase domain. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=99.17 E-value=3.1e-10 Score=93.16 Aligned_cols=105 Identities=20% Similarity=0.239 Sum_probs=86.1
Q ss_pred CEEEEeCCCChhHHHHHHHHHcCCcEEEEEeCCCCcEEEEEEhhhhcccCCc--cccchhhhhhhhcCCceEEcCCCCHH
Q psy4847 54 DVYMLSYDAILDFETVSEIMKSGYSRIPVYEDRRTNIVTMFYIKDLALVDPD--DNTPLKTLCQFYQNSCYFVFEDTTLD 131 (396)
Q Consensus 54 dv~~l~~d~~l~~e~i~~i~~~g~sriPV~~~~~~~IVGiL~vkDLl~~~~~--~~~~l~~v~~~~~~~v~~V~~dt~L~ 131 (396)
++..++.+.++. ++.+.|.+.+++++||+++ ++++|+|..+||+..... ...++.+++ ..++.++.+++++.
T Consensus 3 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~V~d~--~~~~G~v~~~dl~~~~~~~~~~~~~~~~~---~~~~~~v~~~~~l~ 76 (110)
T cd04595 3 PVKTVRPEATIE-EARELLLRYGHTALPVVEG--GRVVGIISRRDVEKALRHGLGHAPVKDYM---STDVVTVPPDTPLS 76 (110)
T ss_pred CceEeCCCCcHH-HHHHHHHHcCCCeeeEeeC--CEEEEEEEHHHHHHHHhcccccCcHHHHh---cCCCEEECCCCcHH
Confidence 467889999999 9999998889999999986 789999999998743211 223555554 47888999999999
Q ss_pred HHHHHHHhcCCceEEEEEEeCCCCCCCCCCceeeeecHHHHHH
Q psy4847 132 VLLKQFKEGIKGHMAFVHRVNNEGEGDPFYETVGLITLEDVIE 174 (396)
Q Consensus 132 ~~L~~f~~~~~~h~avV~~~~~~~~~De~g~~vGIVTleDIiE 174 (396)
+++..|.+. ..+.++|+ | .|+++|+||..|+++
T Consensus 77 ~~~~~~~~~-~~~~~~V~--------~-~~~~~Gvvt~~di~~ 109 (110)
T cd04595 77 EVQELMVEH-DIGRVPVV--------E-DGRLVGIVTRTDLLR 109 (110)
T ss_pred HHHHHHHHc-CCCeeEEE--------e-CCEEEEEEEhHHhhc
Confidence 999999985 67777777 6 689999999999975
No 59
>cd04614 CBS_pair_1 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera
Probab=99.17 E-value=3.5e-10 Score=92.02 Aligned_cols=94 Identities=15% Similarity=0.166 Sum_probs=81.1
Q ss_pred CEEEEeCCCChhHHHHHHHHHcCCcEEEEEeCCCCcEEEEEEhhhhcccCCccccchhhhhhhhcCCceEEcCCCCHHHH
Q psy4847 54 DVYMLSYDAILDFETVSEIMKSGYSRIPVYEDRRTNIVTMFYIKDLALVDPDDNTPLKTLCQFYQNSCYFVFEDTTLDVL 133 (396)
Q Consensus 54 dv~~l~~d~~l~~e~i~~i~~~g~sriPV~~~~~~~IVGiL~vkDLl~~~~~~~~~l~~v~~~~~~~v~~V~~dt~L~~~ 133 (396)
++..++.+.++. ++++.|.+.+++.+||++++ ++++|+++.+||+... .+.++.+++++.++
T Consensus 2 ~~~~v~~~~~i~-~a~~~~~~~~~~~~~V~d~~-~~~~Giv~~~dl~~~~----------------~~~~v~~~~~l~~a 63 (96)
T cd04614 2 NVPTVWEETPLP-VAVRIMELANVKALPVLDDD-GKLSGIITERDLIAKS----------------EVVTATKRTTVSEC 63 (96)
T ss_pred CccEeCCCCcHH-HHHHHHHHcCCCeEEEECCC-CCEEEEEEHHHHhcCC----------------CcEEecCCCCHHHH
Confidence 467889999999 99999988999999999765 7899999999997632 16789999999999
Q ss_pred HHHHHhcCCceEEEEEEeCCCCCCCCCCceeeeecHHHHHH
Q psy4847 134 LKQFKEGIKGHMAFVHRVNNEGEGDPFYETVGLITLEDVIE 174 (396)
Q Consensus 134 L~~f~~~~~~h~avV~~~~~~~~~De~g~~vGIVTleDIiE 174 (396)
++.|.+. +.+.++|+ |+.|+++|+||..||+.
T Consensus 64 ~~~m~~~-~~~~lpVv--------~~~~~~~Giit~~di~~ 95 (96)
T cd04614 64 AQKMKRN-RIEQIPII--------NGNDKLIGLLRDHDLLK 95 (96)
T ss_pred HHHHHHh-CCCeeeEE--------CCCCcEEEEEEHHHhhc
Confidence 9999985 77777777 66689999999999975
No 60
>cd04585 CBS_pair_ACT_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the acetoin utilization proteins in bacteria. Acetoin is a product of fermentative metabolism in many prokaryotic and eukaryotic microorganisms. They produce acetoin as an external carbon storage compound and then later reuse it as a carbon and energy source during their stationary phase and sporulation. In addition these CBS domains are associated with a downstream ACT domain, which is linked to a wide range of metabolic enzymes that are regulated by amino acid concentration. Pairs of ACT domains bind specifically to a particular amino acid leading to regulation of the linked enzyme. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The i
Probab=99.16 E-value=3.7e-10 Score=93.64 Aligned_cols=108 Identities=20% Similarity=0.211 Sum_probs=86.0
Q ss_pred EEEEeCCCChhHHHHHHHHHcCCcEEEEEeCCCCcEEEEEEhhhhcccCCccc--c---------chhhhhhhhcCCceE
Q psy4847 55 VYMLSYDAILDFETVSEIMKSGYSRIPVYEDRRTNIVTMFYIKDLALVDPDDN--T---------PLKTLCQFYQNSCYF 123 (396)
Q Consensus 55 v~~l~~d~~l~~e~i~~i~~~g~sriPV~~~~~~~IVGiL~vkDLl~~~~~~~--~---------~l~~v~~~~~~~v~~ 123 (396)
+..++.+.++. ++++.|.+.++..+||+++ ++++|+++.+||+....... . .-..+.+++.+++++
T Consensus 3 ~~~v~~~~~~~-~~~~~~~~~~~~~~~V~d~--~~~~G~i~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (122)
T cd04585 3 PITVTPDTSLM-EALKLMKENSIRRLPVVDR--GKLVGIVTDRDLKLASPSKATTLDIWELYYLLSKIKVSDIMTRDPIT 79 (122)
T ss_pred CEEeCCCCcHH-HHHHHHHhCCcceeeEecC--CeEEEEEeHHHHHHhhhcccccccchhhhhhhcccCHHHhccCCCeE
Confidence 56789999999 9999999999999999976 79999999999975322100 0 012234444578899
Q ss_pred EcCCCCHHHHHHHHHhcCCceEEEEEEeCCCCCCCCCCceeeeecHHHHHH
Q psy4847 124 VFEDTTLDVLLKQFKEGIKGHMAFVHRVNNEGEGDPFYETVGLITLEDVIE 174 (396)
Q Consensus 124 V~~dt~L~~~L~~f~~~~~~h~avV~~~~~~~~~De~g~~vGIVTleDIiE 174 (396)
+++++++.+++..|.+. ..+.++|+ |+.|+++|+||..||++
T Consensus 80 v~~~~~l~~~~~~~~~~-~~~~~~Vv--------~~~~~~~Gvvt~~di~~ 121 (122)
T cd04585 80 VSPDASVEEAAELMLER-KISGLPVV--------DDQGRLVGIITESDLFR 121 (122)
T ss_pred eCCCCcHHHHHHHHHHc-CCCceeEE--------CCCCcEEEEEEHHHhhh
Confidence 99999999999999985 67777777 77789999999999985
No 61
>cd04602 CBS_pair_IMPDH_2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the inosine 5' monophosphate dehydrogenase (IMPDH) protein. IMPDH is an essential enzyme that catalyzes the first step unique to GTP synthesis, playing a key role in the regulation of cell proliferation and differentiation. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain in IMPDH have been associated with retinitis pigmentos
Probab=99.16 E-value=3.7e-10 Score=93.76 Aligned_cols=107 Identities=24% Similarity=0.295 Sum_probs=85.8
Q ss_pred CEEEEeCCCChhHHHHHHHHHcCCcEEEEEeCC--CCcEEEEEEhhhhcccCCccccchhhhhhhhcCCceEEcC--CCC
Q psy4847 54 DVYMLSYDAILDFETVSEIMKSGYSRIPVYEDR--RTNIVTMFYIKDLALVDPDDNTPLKTLCQFYQNSCYFVFE--DTT 129 (396)
Q Consensus 54 dv~~l~~d~~l~~e~i~~i~~~g~sriPV~~~~--~~~IVGiL~vkDLl~~~~~~~~~l~~v~~~~~~~v~~V~~--dt~ 129 (396)
++..++.++++. ++++.|.+.++.++||+++. .++++|+++.+|++..... ..++++++ ..+...+.. +++
T Consensus 3 ~~~~i~~~~~~~-~~~~~~~~~~~~~~~V~d~~~~~~~~~G~v~~~dl~~~~~~-~~~v~~~~---~~~~~~~~~~~~~~ 77 (114)
T cd04602 3 DPSVLSPDHTVA-DVLEIKEKKGFSGIPVTEDGKSGGKLLGIVTSRDIDFLTDS-ETPLSEVM---TPREVLVVAPTGIT 77 (114)
T ss_pred CCeEcCCCCCHH-HHHHHHHHcCCCceEEeeCCCcCCEEEEEEEhHHhhhhhcc-CCCHHHhc---CCCceEEECCCCCC
Confidence 356788999999 99999988999999999852 3789999999999754322 23466665 355667755 999
Q ss_pred HHHHHHHHHhcCCceEEEEEEeCCCCCCCCCCceeeeecHHHHHH
Q psy4847 130 LDVLLKQFKEGIKGHMAFVHRVNNEGEGDPFYETVGLITLEDVIE 174 (396)
Q Consensus 130 L~~~L~~f~~~~~~h~avV~~~~~~~~~De~g~~vGIVTleDIiE 174 (396)
+.++++.|.+. ..+.++|+ |+.|+++|+||.+||++
T Consensus 78 l~~~l~~~~~~-~~~~~pVv--------~~~~~~~Gvit~~di~~ 113 (114)
T cd04602 78 LEEANEILRES-KKGKLPIV--------NDDGELVALVTRSDLKK 113 (114)
T ss_pred HHHHHHHHHhc-CCCceeEE--------CCCCeEEEEEEHHHhhc
Confidence 99999999995 77777777 77789999999999875
No 62
>cd04617 CBS_pair_4 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera
Probab=99.15 E-value=3.2e-10 Score=94.82 Aligned_cols=108 Identities=12% Similarity=0.134 Sum_probs=84.5
Q ss_pred EEEEeCCCChhHHHHHHHHHcCCcEEEEEeCCCCcEEEEEEhhhhcccCCc----cccchhhhhhhhcCCceEEcCCCCH
Q psy4847 55 VYMLSYDAILDFETVSEIMKSGYSRIPVYEDRRTNIVTMFYIKDLALVDPD----DNTPLKTLCQFYQNSCYFVFEDTTL 130 (396)
Q Consensus 55 v~~l~~d~~l~~e~i~~i~~~g~sriPV~~~~~~~IVGiL~vkDLl~~~~~----~~~~l~~v~~~~~~~v~~V~~dt~L 130 (396)
+..++.+.++. ++++.|.+++...+||.+++ ++++|+|+.+||+..... ...++.++|.. ..+++++.+++++
T Consensus 3 ~~~~~~~~~~~-~a~~~~~~~~~~~~~V~d~~-~~~~Givt~~dl~~~~~~~~~~~~~~~~~~~~~-~~~~~~v~~~~~l 79 (118)
T cd04617 3 PVVVRENTSVY-DAIVTLFLEDVGSLFVVDED-GDLVGVVSRKDLLKASIGGADLQKVPVGVIMTR-MPNITTTTPEESV 79 (118)
T ss_pred CEEECCCCCHH-HHHHHHHHcCCCEEEEEcCC-CCEEEEEEHHHHHHHHHcCCCccCCCHHHHhCC-CCCcEEECCCCcH
Confidence 56889999999 99999989999999999765 789999999998753211 12344555420 0268899999999
Q ss_pred HHHHHHHHhcCCceEEEEEEeCCCCCCCCC---CceeeeecHHHHHH
Q psy4847 131 DVLLKQFKEGIKGHMAFVHRVNNEGEGDPF---YETVGLITLEDVIE 174 (396)
Q Consensus 131 ~~~L~~f~~~~~~h~avV~~~~~~~~~De~---g~~vGIVTleDIiE 174 (396)
.++++.|.++ ..+.++|+ |+. |+++|+||..|++.
T Consensus 80 ~~~~~~~~~~-~~~~lpVv--------d~~~~~~~l~Gvit~~~l~~ 117 (118)
T cd04617 80 LEAAKKLIEH-QVDSLPVV--------EKVDEGLEVIGRITKTNITK 117 (118)
T ss_pred HHHHHHHHHc-CCCEeeEE--------eCCCccceEEEEEEhhheec
Confidence 9999999995 77767776 554 68999999999864
No 63
>PRK01862 putative voltage-gated ClC-type chloride channel ClcB; Provisional
Probab=99.14 E-value=2.4e-10 Score=122.03 Aligned_cols=122 Identities=13% Similarity=0.150 Sum_probs=98.9
Q ss_pred ccccccccccccCCCEEEEeCCCChhHHHHHHHHHcCCcEEEEEeCCCCcEEEEEEhhhhccc--CC-c-cccchhhhhh
Q psy4847 40 LRRKIVGDVMTKLEDVYMLSYDAILDFETVSEIMKSGYSRIPVYEDRRTNIVTMFYIKDLALV--DP-D-DNTPLKTLCQ 115 (396)
Q Consensus 40 l~~~tV~dIMtp~~dv~~l~~d~~l~~e~i~~i~~~g~sriPV~~~~~~~IVGiL~vkDLl~~--~~-~-~~~~l~~v~~ 115 (396)
++..+|+|+|++. +..++.++++. ++.+.+.++++..+||+|++ ++++|+|+.+|+... .. + ...++.+++
T Consensus 444 L~~~~V~dim~~~--~~~v~~~~tl~-ea~~~l~~~~~~~~~VvD~~-g~lvGiVt~~dL~~~l~~~~~~~~~~v~dim- 518 (574)
T PRK01862 444 LRTTQMRELIQPA--QTVVPPTASVA-DMTRVFLEYPVKYLYVVDDD-GRFRGAVALKDITSDLLDKRDTTDKTAADYA- 518 (574)
T ss_pred HhhCcHHHHhcCC--CceeCCCCCHH-HHHHHHHhCCCceEEEEcCC-CeEEEEEEHHHHHHHhhcccccccchHHHhc-
Confidence 5678899999865 67899999999 99999999999999999865 789999999999752 11 1 123455554
Q ss_pred hhcCCceEEcCCCCHHHHHHHHHhcCCceEEEEEEeCCCCCCCCC--CceeeeecHHHHHHHHH
Q psy4847 116 FYQNSCYFVFEDTTLDVLLKQFKEGIKGHMAFVHRVNNEGEGDPF--YETVGLITLEDVIEELI 177 (396)
Q Consensus 116 ~~~~~v~~V~~dt~L~~~L~~f~~~~~~h~avV~~~~~~~~~De~--g~~vGIVTleDIiEeli 177 (396)
.++++++.+++++.++++.|.+. +.+..+|+ |+. ++++|+||..||++++.
T Consensus 519 --~~~~~~v~~d~~L~~al~~m~~~-~~~~lpVV--------d~~~~~~liGvIt~~DIl~~l~ 571 (574)
T PRK01862 519 --HTPFPLLTPDMPLGDALEHFMAF-QGERLPVV--------ESEASPTLAGVVYKTSLLDAYR 571 (574)
T ss_pred --cCCCeeECCCCCHHHHHHHHHhc-CCCeeeeE--------eCCCCCeEEEEEEHHHHHHHHH
Confidence 57889999999999999999985 66555565 443 58999999999999985
No 64
>cd02205 CBS_pair The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic generali
Probab=99.14 E-value=5.6e-10 Score=89.97 Aligned_cols=110 Identities=25% Similarity=0.286 Sum_probs=87.1
Q ss_pred CEEEEeCCCChhHHHHHHHHHcCCcEEEEEeCCCCcEEEEEEhhhhcccCCccc-cchhhhhhhhcCCceEEcCCCCHHH
Q psy4847 54 DVYMLSYDAILDFETVSEIMKSGYSRIPVYEDRRTNIVTMFYIKDLALVDPDDN-TPLKTLCQFYQNSCYFVFEDTTLDV 132 (396)
Q Consensus 54 dv~~l~~d~~l~~e~i~~i~~~g~sriPV~~~~~~~IVGiL~vkDLl~~~~~~~-~~l~~v~~~~~~~v~~V~~dt~L~~ 132 (396)
++..++.+.++. ++++.+.+.++.++||++++ ++++|+++.+||+.....+. .....+..++..++.++++++++.+
T Consensus 2 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~v~~~~-~~~~G~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (113)
T cd02205 2 DVVTVSPDDTVA-EALRLMLEHGISGLPVVDDD-GRLVGIVTERDLLRALAEGGLDPLVTVGDVMTRDVVTVSPDTSLEE 79 (113)
T ss_pred CceEecCCCCHH-HHHHHHHhcCCceEEEECCC-CCEEEEEeHHHHHHHHHhccCCccccHHHHhcCCceecCCCcCHHH
Confidence 356788999999 99999999899999999765 79999999999975432211 1111123344578899999999999
Q ss_pred HHHHHHhcCCceEEEEEEeCCCCCCCCCCceeeeecHHHHHH
Q psy4847 133 LLKQFKEGIKGHMAFVHRVNNEGEGDPFYETVGLITLEDVIE 174 (396)
Q Consensus 133 ~L~~f~~~~~~h~avV~~~~~~~~~De~g~~vGIVTleDIiE 174 (396)
++..|.+. +.+.++|+ |+.|+++|++|..|+++
T Consensus 80 ~~~~~~~~-~~~~~~V~--------~~~~~~~G~i~~~dl~~ 112 (113)
T cd02205 80 AAELMLEH-GIRRLPVV--------DDEGRLVGIVTRSDILR 112 (113)
T ss_pred HHHHHHHc-CCCEEEEE--------cCCCcEEEEEEHHHhhc
Confidence 99999985 67777777 77899999999999875
No 65
>cd04629 CBS_pair_16 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.14 E-value=2.1e-10 Score=94.48 Aligned_cols=106 Identities=23% Similarity=0.224 Sum_probs=84.8
Q ss_pred CEEEEeCCCChhHHHHHHHHHcCCcEEEEEeCCCCcEEEEEEhhhhcccCC------ccccchhhhhhhhcCCceEEcCC
Q psy4847 54 DVYMLSYDAILDFETVSEIMKSGYSRIPVYEDRRTNIVTMFYIKDLALVDP------DDNTPLKTLCQFYQNSCYFVFED 127 (396)
Q Consensus 54 dv~~l~~d~~l~~e~i~~i~~~g~sriPV~~~~~~~IVGiL~vkDLl~~~~------~~~~~l~~v~~~~~~~v~~V~~d 127 (396)
++..++.+.++. ++.+.+.+.+++.+||++++ ++++|+|+.+||+.... ....++.+++ ..++++++++
T Consensus 2 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~V~~~~-~~~~G~v~~~~l~~~~~~~~~~~~~~~~v~~~~---~~~~~~v~~~ 76 (114)
T cd04629 2 NPVTFTPDMSVT-EAVEKLLKSKISGGPVVDDN-GNLVGFLSEQDCLKQLLESSYHCDGVATVRDIM---TTEVLTVSPD 76 (114)
T ss_pred CCeEeCCCCCHH-HHHHHHHhcCCCCccEECCC-CeEEEEeehHHHHHHhhhhhhccCCCccHHHHh---ccCceEECCC
Confidence 356789999999 99999988899999999765 78999999999974211 1123455554 4678899999
Q ss_pred CCHHHHHHHHHhcCCceEEEEEEeCCCCCCCCCCceeeeecHHHHHH
Q psy4847 128 TTLDVLLKQFKEGIKGHMAFVHRVNNEGEGDPFYETVGLITLEDVIE 174 (396)
Q Consensus 128 t~L~~~L~~f~~~~~~h~avV~~~~~~~~~De~g~~vGIVTleDIiE 174 (396)
+++.++++.|.+. +.+.++|+ |+ |+++|+||..||++
T Consensus 77 ~~l~~~~~~~~~~-~~~~~~Vv--------~~-~~~~Gvit~~di~~ 113 (114)
T cd04629 77 DSIVDLAQLMLKA-KPKRYPVV--------DD-GKLVGQISRRDVLR 113 (114)
T ss_pred CcHHHHHHHHHHh-CCCccCEE--------EC-CEEEEEEEHHHHhc
Confidence 9999999999995 56656666 55 89999999999975
No 66
>cd04608 CBS_pair_PALP_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the pyridoxal-phosphate (PALP) dependent enzyme domain upstream. The vitamin B6 complex comprises pyridoxine, pyridoxal, and pyridoxamine, as well as the 5'-phosphate esters of pyridoxal (PALP) and pyridoxamine, the last two being the biologically active coenzyme derivatives. The members of the PALP family are principally involved in the biosynthesis of amino acids and amino acid-derived metabolites, but they are also found in the biosynthetic pathways of amino sugars and other amine-containing compounds. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a poten
Probab=99.14 E-value=1.9e-10 Score=98.01 Aligned_cols=110 Identities=15% Similarity=0.219 Sum_probs=85.4
Q ss_pred CEEEEeCCCChhHHHHHHHHHcCCcEEEEEeCCCCcEEEEEEhhhhccc----CCccccchhhhhhhhcCCceEEcCCCC
Q psy4847 54 DVYMLSYDAILDFETVSEIMKSGYSRIPVYEDRRTNIVTMFYIKDLALV----DPDDNTPLKTLCQFYQNSCYFVFEDTT 129 (396)
Q Consensus 54 dv~~l~~d~~l~~e~i~~i~~~g~sriPV~~~~~~~IVGiL~vkDLl~~----~~~~~~~l~~v~~~~~~~v~~V~~dt~ 129 (396)
++.+++.+.++. ++++.|.+.++..+||++++ ++++|+++.+||+.. ..+...++.++| .+++.++.++++
T Consensus 3 ~~~~v~~~~~v~-~a~~~m~~~~~~~~~Vvd~~-~~~~Gii~~~dl~~~~~~~~~~~~~~v~~im---~~~~~~v~~~~~ 77 (124)
T cd04608 3 APVTVLPTVTCA-EAIEILKEKGFDQLPVVDES-GKILGMVTLGNLLSSLSSGKVQPSDPVSKAL---YKQFKRVNKNDT 77 (124)
T ss_pred CCEEECCCCCHH-HHHHHHHHcCCCEEEEEcCC-CCEEEEEEHHHHHHHHHHhccCCCCcHHHHh---hccceecCCCCC
Confidence 467899999999 99999999999999999765 789999999999741 111234666666 488999999999
Q ss_pred HHHHHHHHHhc--------CCceEEEEEEeCCCCCCCCCCceeeeecHHHHHHHH
Q psy4847 130 LDVLLKQFKEG--------IKGHMAFVHRVNNEGEGDPFYETVGLITLEDVIEEL 176 (396)
Q Consensus 130 L~~~L~~f~~~--------~~~h~avV~~~~~~~~~De~g~~vGIVTleDIiEel 176 (396)
+.++.+.|... .+.+.++|+ |++|+++||||..||+..+
T Consensus 78 ~~~v~~~~~~~~~~~~~~~~~~~~~~v~--------~~~~~~~Givt~~Dl~~~~ 124 (124)
T cd04608 78 LGKLSRILETDAFLLVFFEQISSAAIGK--------EKQEKPIGIVTKIDLLSYI 124 (124)
T ss_pred HHHHHhhcccCCceEEEecccccccccc--------ccccceEEEEehhHhhhhC
Confidence 99999965321 023444454 6779999999999998753
No 67
>cd04584 CBS_pair_ACT_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the acetoin utilization proteins in bacteria. Acetoin is a product of fermentative metabolism in many prokaryotic and eukaryotic microorganisms. They produce acetoin as an external carbon storage compound and then later reuse it as a carbon and energy source during their stationary phase and sporulation. In addition these CBS domains are associated with a downstream ACT domain, which is linked to a wide range of metabolic enzymes that are regulated by amino acid concentration. Pairs of ACT domains bind specifically to a particular amino acid leading to regulation of the linked enzyme. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The in
Probab=99.14 E-value=4.7e-10 Score=93.34 Aligned_cols=106 Identities=19% Similarity=0.233 Sum_probs=85.8
Q ss_pred CEEEEeCCCChhHHHHHHHHHcCCcEEEEEeCCCCcEEEEEEhhhhcccCC-------------ccccchhhhhhhhcCC
Q psy4847 54 DVYMLSYDAILDFETVSEIMKSGYSRIPVYEDRRTNIVTMFYIKDLALVDP-------------DDNTPLKTLCQFYQNS 120 (396)
Q Consensus 54 dv~~l~~d~~l~~e~i~~i~~~g~sriPV~~~~~~~IVGiL~vkDLl~~~~-------------~~~~~l~~v~~~~~~~ 120 (396)
++.+++.++++. +++..+.+.+++++||++++ ++++|+++.+||+.... ....++.+++ ..+
T Consensus 2 ~~~~~~~~~~l~-~a~~~~~~~~~~~~~V~d~~-~~~~G~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~v~~~~---~~~ 76 (121)
T cd04584 2 DVVTITPTTTIA-EALELMREHKIRHLPVVDEE-GRLVGIVTDRDLRDASPSPFTTLSEHELYLLLKMPVKEIM---TKD 76 (121)
T ss_pred CCEEECCCCCHH-HHHHHHHHcCCCcccEECCC-CcEEEEEEHHHHHHHhhhhcccchhhhhhhhcCcCHHHHh---hCC
Confidence 357889999999 99999999999999999875 79999999999874321 1123455554 478
Q ss_pred ceEEcCCCCHHHHHHHHHhcCCceEEEEEEeCCCCCCCCCCceeeeecHHHHHH
Q psy4847 121 CYFVFEDTTLDVLLKQFKEGIKGHMAFVHRVNNEGEGDPFYETVGLITLEDVIE 174 (396)
Q Consensus 121 v~~V~~dt~L~~~L~~f~~~~~~h~avV~~~~~~~~~De~g~~vGIVTleDIiE 174 (396)
+.++++++++.++++.|.++ ..+.++|+ |. |+++|+||..||++
T Consensus 77 ~~~i~~~~~l~~~~~~~~~~-~~~~~~V~--------~~-~~~~Gvv~~~di~~ 120 (121)
T cd04584 77 VITVHPLDTVEEAALLMREH-RIGCLPVV--------ED-GRLVGIITETDLLR 120 (121)
T ss_pred CeEECCCCcHHHHHHHHHHc-CCCeEEEe--------eC-CEEEEEEEHHHhhc
Confidence 89999999999999999985 66666776 55 89999999999975
No 68
>cd04589 CBS_pair_CAP-ED_DUF294_assoc_bac This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the bacterial CAP_ED (cAMP receptor protein effector domain) family of transcription factors and the DUF294 domain. Members of CAP_ED, include CAP which binds cAMP, FNR (fumarate and nitrate reductase) which uses an iron-sulfur cluster to sense oxygen, and CooA a heme containing CO sensor. In all cases binding of the effector leads to conformational changes and the ability to activate transcription. DUF294 is a putative nucleotidyltransferase with a conserved DxD motif. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or
Probab=99.14 E-value=5.9e-10 Score=91.66 Aligned_cols=104 Identities=15% Similarity=0.147 Sum_probs=85.5
Q ss_pred EEEEeCCCChhHHHHHHHHHcCCcEEEEEeCCCCcEEEEEEhhhhcccC--C--ccccchhhhhhhhcCCceEEcCCCCH
Q psy4847 55 VYMLSYDAILDFETVSEIMKSGYSRIPVYEDRRTNIVTMFYIKDLALVD--P--DDNTPLKTLCQFYQNSCYFVFEDTTL 130 (396)
Q Consensus 55 v~~l~~d~~l~~e~i~~i~~~g~sriPV~~~~~~~IVGiL~vkDLl~~~--~--~~~~~l~~v~~~~~~~v~~V~~dt~L 130 (396)
+..++.+.++. ++++.|.+.++..+||+++ ++++|+++.+|++... . ....++.+++ ..+++.|++++++
T Consensus 3 ~~~v~~~~~~~-~~~~~~~~~~~~~~~V~d~--~~~~G~v~~~~l~~~~~~~~~~~~~~i~~~~---~~~~~~v~~~~~l 76 (111)
T cd04589 3 PLIVDASTSIR-DAARLMREHGADALLVRDG--DPRLGIVTRTDLLDAVLLDGLPSSTPVGEIA---TFPLITVDPDDFL 76 (111)
T ss_pred CEEECCCCcHH-HHHHHHHHcCCCEEEEecC--CeEEEEEEHHHHHHHHHcCCCCCCCCHHHHh---CCCcEEECCCCcH
Confidence 45788999999 9999999999999999976 6899999999987531 1 1223566655 4788999999999
Q ss_pred HHHHHHHHhcCCceEEEEEEeCCCCCCCCCCceeeeecHHHHHH
Q psy4847 131 DVLLKQFKEGIKGHMAFVHRVNNEGEGDPFYETVGLITLEDVIE 174 (396)
Q Consensus 131 ~~~L~~f~~~~~~h~avV~~~~~~~~~De~g~~vGIVTleDIiE 174 (396)
.++++.|.+. ..+.++|+ |+ |+++|+||..|+++
T Consensus 77 ~~~~~~~~~~-~~~~~~Vv--------~~-~~~~G~it~~dl~~ 110 (111)
T cd04589 77 FNALLLMTRH-RIHRVVVR--------EG-GEVVGVLEQTDLLS 110 (111)
T ss_pred HHHHHHHHHh-CccEEEEe--------eC-CEEEEEEEhHHhhc
Confidence 9999999995 78888887 54 89999999999975
No 69
>cd04638 CBS_pair_25 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.14 E-value=7.9e-10 Score=90.30 Aligned_cols=104 Identities=20% Similarity=0.218 Sum_probs=85.3
Q ss_pred CEEEEeCCCChhHHHHHHHHHcCCcEEEEEeCCCCcEEEEEEhhhhcccCCccccchhhhhhhhcCCceEEcCCCCHHHH
Q psy4847 54 DVYMLSYDAILDFETVSEIMKSGYSRIPVYEDRRTNIVTMFYIKDLALVDPDDNTPLKTLCQFYQNSCYFVFEDTTLDVL 133 (396)
Q Consensus 54 dv~~l~~d~~l~~e~i~~i~~~g~sriPV~~~~~~~IVGiL~vkDLl~~~~~~~~~l~~v~~~~~~~v~~V~~dt~L~~~ 133 (396)
++.++..+.++. +++..+.+.+++++||++++ ++++|+++.++++....+ .++..++ ..++.++++++++.++
T Consensus 2 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~v~~~~-~~~~g~v~~~~l~~~~~~--~~~~~~~---~~~~~~v~~~~~l~~~ 74 (106)
T cd04638 2 NVVYVTLPGTRD-DVLELLKEYKVSGVPVVKKS-GELVGIITRKDLLRNPEE--EQLALLM---TRDPPTVSPDDDVKEA 74 (106)
T ss_pred CcEEECCCCCHH-HHHHHHHHcCCCeEEEEcCC-CcEEEEEEHHHHHhcccc--chHHHHh---cCCCceECCCCCHHHH
Confidence 467888899999 89999988999999999876 789999999999754322 2444443 5778899999999999
Q ss_pred HHHHHhcCCceEEEEEEeCCCCCCCCCCceeeeecHHHHHH
Q psy4847 134 LKQFKEGIKGHMAFVHRVNNEGEGDPFYETVGLITLEDVIE 174 (396)
Q Consensus 134 L~~f~~~~~~h~avV~~~~~~~~~De~g~~vGIVTleDIiE 174 (396)
+..|.+. +.+.++|+ |. |+++|+||.+|+++
T Consensus 75 ~~~~~~~-~~~~~~Vv--------d~-~~~~G~it~~d~~~ 105 (106)
T cd04638 75 AKLMVEN-NIRRVPVV--------DD-GKLVGIVTVADIVR 105 (106)
T ss_pred HHHHHHc-CCCEEEEE--------EC-CEEEEEEEHHHhhc
Confidence 9999985 67777777 53 79999999999875
No 70
>cd04622 CBS_pair_9 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera
Probab=99.13 E-value=7.7e-10 Score=90.95 Aligned_cols=106 Identities=22% Similarity=0.281 Sum_probs=85.7
Q ss_pred CEEEEeCCCChhHHHHHHHHHcCCcEEEEEeCCCCcEEEEEEhhhhccc---CCc--cccchhhhhhhhcCCceEEcCCC
Q psy4847 54 DVYMLSYDAILDFETVSEIMKSGYSRIPVYEDRRTNIVTMFYIKDLALV---DPD--DNTPLKTLCQFYQNSCYFVFEDT 128 (396)
Q Consensus 54 dv~~l~~d~~l~~e~i~~i~~~g~sriPV~~~~~~~IVGiL~vkDLl~~---~~~--~~~~l~~v~~~~~~~v~~V~~dt 128 (396)
++..++.++++. ++.+.|.+.++..+||+++ ++++|+++.+||+.. ... ...++.+++ ...+.++.+++
T Consensus 2 ~~~~v~~~~~~~-~~~~~~~~~~~~~~~v~~~--~~~~G~i~~~~l~~~~~~~~~~~~~~~~~~~~---~~~~~~v~~~~ 75 (113)
T cd04622 2 DVVTVSPDDTIR-EAARLMREHDVGALPVCEN--DRLVGIVTDRDIVVRAVAEGRDPDTTTVGDVM---TRGVVTVTEDD 75 (113)
T ss_pred CCEEECCCCcHH-HHHHHHHHcCCCEEEEeeC--CEEEEEEEhHHHHHHHhhccCCcccCCHHHhc---cCCccEECCCC
Confidence 356789999999 9999999999999999976 899999999998621 111 112355554 46788999999
Q ss_pred CHHHHHHHHHhcCCceEEEEEEeCCCCCCCCCCceeeeecHHHHHH
Q psy4847 129 TLDVLLKQFKEGIKGHMAFVHRVNNEGEGDPFYETVGLITLEDVIE 174 (396)
Q Consensus 129 ~L~~~L~~f~~~~~~h~avV~~~~~~~~~De~g~~vGIVTleDIiE 174 (396)
++.++++.|... ..+.++|+ |+.|+++|+||..|+++
T Consensus 76 ~~~~~~~~~~~~-~~~~~~V~--------~~~~~~~G~it~~di~~ 112 (113)
T cd04622 76 DVDEAARLMREH-QVRRLPVV--------DDDGRLVGIVSLGDLAR 112 (113)
T ss_pred CHHHHHHHHHHc-CCCeeeEE--------CCCCcEEEEEEHHHhhc
Confidence 999999999984 67777777 77789999999999975
No 71
>cd04587 CBS_pair_CAP-ED_DUF294_PBI_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with either the CAP_ED (cAMP receptor protein effector domain) family of transcription factors and the DUF294 domain or the PB1 (Phox and Bem1p) domain. Members of CAP_ED, include CAP which binds cAMP, FNR (fumarate and nitrate reductase) which uses an iron-sulfur cluster to sense oxygen, and CooA a heme containing CO sensor. In all cases binding of the effector leads to conformational changes and the ability to activate transcription. DUF294 is a putative nucleotidyltransferase with a conserved DxD motif. The PB1 domain adopts a beta-grasp fold, similar to that found in ubiquitin and Ras-binding domains. A motif, variously termed OPR, PC and AID, represents the most conserved region of the majority of PB1 domains, and is necessary for PB1 domain function. This function is the formation of PB1 domain heterodimers, although not all PB1 domain pai
Probab=99.13 E-value=6.4e-10 Score=91.44 Aligned_cols=106 Identities=21% Similarity=0.203 Sum_probs=84.3
Q ss_pred CEEEEeCCCChhHHHHHHHHHcCCcEEEEEeCCCCcEEEEEEhhhhcc-c-CCc--cc-cchhhhhhhhcCCceEEcCCC
Q psy4847 54 DVYMLSYDAILDFETVSEIMKSGYSRIPVYEDRRTNIVTMFYIKDLAL-V-DPD--DN-TPLKTLCQFYQNSCYFVFEDT 128 (396)
Q Consensus 54 dv~~l~~d~~l~~e~i~~i~~~g~sriPV~~~~~~~IVGiL~vkDLl~-~-~~~--~~-~~l~~v~~~~~~~v~~V~~dt 128 (396)
++..+..+.++. ++++.|.+.+++++||.++ ++++|+|+.+|++. . ... .. .++.+++ .+++.++++++
T Consensus 2 ~~~~v~~~~~~~-~~~~~~~~~~~~~~~V~~~--~~~~G~v~~~dl~~~~~~~~~~~~~~~v~~i~---~~~~~~v~~~~ 75 (113)
T cd04587 2 KPATVSPTTTVQ-EAAKLMREKRVSCVLVMDG--NKLVGIFTSKDIALRVVAQGLDPESTLVERVM---TPNPVCATSDT 75 (113)
T ss_pred CCeEeCCCCCHH-HHHHHHHHcCCCeEEEEEC--CEEEEEEEhHHHHHHHHhcCCCcCcCCHHHhc---CCCCeEEcCCC
Confidence 356788999999 9999998899999999975 78999999999863 1 111 11 3455554 57888999999
Q ss_pred CHHHHHHHHHhcCCceEEEEEEeCCCCCCCCCCceeeeecHHHHHH
Q psy4847 129 TLDVLLKQFKEGIKGHMAFVHRVNNEGEGDPFYETVGLITLEDVIE 174 (396)
Q Consensus 129 ~L~~~L~~f~~~~~~h~avV~~~~~~~~~De~g~~vGIVTleDIiE 174 (396)
++.+++..|.+. ..+.++|+ |++|+++|+||..||+.
T Consensus 76 ~l~~~~~~~~~~-~~~~l~Vv--------~~~~~~~Gvvs~~dl~~ 112 (113)
T cd04587 76 PVLEALHLMVQG-KFRHLPVV--------DKSGQVVGLLDVTKLTH 112 (113)
T ss_pred CHHHHHHHHHHc-CCCcccEE--------CCCCCEEEEEEHHHhcc
Confidence 999999999985 56555666 66789999999999874
No 72
>cd04632 CBS_pair_19 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.13 E-value=5.7e-10 Score=94.38 Aligned_cols=109 Identities=17% Similarity=0.253 Sum_probs=85.8
Q ss_pred CEEEEeCCCChhHHHHHHHHHcCCcEEEEEeCCCCcEEEEEEhhhhccc--CC---------------ccccchhhhhhh
Q psy4847 54 DVYMLSYDAILDFETVSEIMKSGYSRIPVYEDRRTNIVTMFYIKDLALV--DP---------------DDNTPLKTLCQF 116 (396)
Q Consensus 54 dv~~l~~d~~l~~e~i~~i~~~g~sriPV~~~~~~~IVGiL~vkDLl~~--~~---------------~~~~~l~~v~~~ 116 (396)
++.+++.+.++. ++.+.|.+.+++.+||++++ ++++|+++.+||+.. .. ....++.++
T Consensus 2 ~~~~i~~~~~~~-~~~~~~~~~~~~~~~Vv~~~-~~~~G~it~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--- 76 (128)
T cd04632 2 DVITVREDDSVG-KAINVLREHGISRLPVVDDN-GKLTGIVTRHDIVDFVVRDRDKARTGDRSGEKERMLDLPVYDA--- 76 (128)
T ss_pred CceEeCCCCCHH-HHHHHHHHcCCCEEEEECCC-CcEEEEEEHHHHHHHHhhhhhhcchhhhhhhhhhhccCcHHHH---
Confidence 466789999999 99999999999999999865 789999999998632 11 001234444
Q ss_pred hcCCceEEcCCCCHHHHHHHHHhcCCceEEEEEEeCCCCCCCCCCceeeeecHHHHHH
Q psy4847 117 YQNSCYFVFEDTTLDVLLKQFKEGIKGHMAFVHRVNNEGEGDPFYETVGLITLEDVIE 174 (396)
Q Consensus 117 ~~~~v~~V~~dt~L~~~L~~f~~~~~~h~avV~~~~~~~~~De~g~~vGIVTleDIiE 174 (396)
+.++++++++++++.+++..|.+. ..+.++|.+ .|+.|+++|+||.+||++
T Consensus 77 ~~~~~~~v~~~~~l~~~l~~~~~~-~~~~~~V~~------~~~~~~~~Gvit~~di~~ 127 (128)
T cd04632 77 MSSPVITASPNDSVRDAVDRMLEN-DDSSVVVVT------PDDDTKVVGILTKKDVLR 127 (128)
T ss_pred hcCCCceECCCCcHHHHHHHHHhC-CCCeEeEec------cCCCCcEEEEEEhHhhhc
Confidence 457899999999999999999985 677777751 124589999999999985
No 73
>cd04594 CBS_pair_EriC_assoc_archaea This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the EriC CIC-type chloride channels in archaea. These ion channels are proteins with a seemingly simple task of allowing the passive flow of chloride ions across biological membranes. CIC-type chloride channels come from all kingdoms of life, have several gene families, and can be gated by voltage. The members of the CIC-type chloride channel are double-barreled: two proteins forming homodimers at a broad interface formed by four helices from each protein. The two pores are not found at this interface, but are completely contained within each subunit, as deduced from the mutational analyses, unlike many other channels, in which four or five identical or structurally related subunits jointly form one pore. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS do
Probab=99.13 E-value=6.1e-10 Score=91.05 Aligned_cols=100 Identities=14% Similarity=0.161 Sum_probs=83.5
Q ss_pred EEEeCCCChhHHHHHHHHHcCCcEEEEEeCCCCcEEEEEEhhhhcccCCccccchhhhhhhhcCCceEEcCCCCHHHHHH
Q psy4847 56 YMLSYDAILDFETVSEIMKSGYSRIPVYEDRRTNIVTMFYIKDLALVDPDDNTPLKTLCQFYQNSCYFVFEDTTLDVLLK 135 (396)
Q Consensus 56 ~~l~~d~~l~~e~i~~i~~~g~sriPV~~~~~~~IVGiL~vkDLl~~~~~~~~~l~~v~~~~~~~v~~V~~dt~L~~~L~ 135 (396)
..++.+.++. ++++.+.+.++.++||+++ ++++|+++.+|++.... .++.+++ ..++.+|+++.++.+++.
T Consensus 4 ~~v~~~~~~~-~~~~~~~~~~~~~~~V~d~--~~~~G~v~~~~l~~~~~---~~~~~~~---~~~~~~v~~~~~l~~a~~ 74 (104)
T cd04594 4 IKVKDYDKVY-EAKRIMIENDLLSLPVVDY--NKFLGAVYLKDIENATY---GDVVDYI---VRGIPYVRLTSTAEEAWE 74 (104)
T ss_pred eEECCCCCHH-HHHHHHHHcCCcEEEEEEC--CEEEEEEEHHHHhhhcc---cchhhhh---hcCCcEEcCCCCHHHHHH
Confidence 3578899999 9999999999999999985 78999999999985432 2344444 467889999999999999
Q ss_pred HHHhcCCceEEEEEEeCCCCCCCCCCceeeeecHHHHHH
Q psy4847 136 QFKEGIKGHMAFVHRVNNEGEGDPFYETVGLITLEDVIE 174 (396)
Q Consensus 136 ~f~~~~~~h~avV~~~~~~~~~De~g~~vGIVTleDIiE 174 (396)
.|.+. +.+.++|+ | .|+++|+||..||++
T Consensus 75 ~~~~~-~~~~~~Vv--------~-~~~~iGvit~~dl~~ 103 (104)
T cd04594 75 VMMKN-KTRWCPVV--------D-DGKFKGIVTLDSILD 103 (104)
T ss_pred HHHHc-CcceEEEE--------E-CCEEEEEEEHHHhhc
Confidence 99985 77877887 5 389999999999875
No 74
>cd04609 CBS_pair_PALP_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the pyridoxal-phosphate (PALP) dependent enzyme domain upstream. The vitamin B6 complex comprises pyridoxine, pyridoxal, and pyridoxamine, as well as the 5'-phosphate esters of pyridoxal (PALP) and pyridoxamine, the last two being the biologically active coenzyme derivatives. The members of the PALP family are principally involved in the biosynthesis of amino acids and amino acid-derived metabolites, but they are also found in the biosynthetic pathways of amino sugars and other amine-containing compounds. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a pote
Probab=99.12 E-value=6e-10 Score=90.82 Aligned_cols=103 Identities=22% Similarity=0.292 Sum_probs=82.4
Q ss_pred EEEEeCCCChhHHHHHHHHHcCCcEEEEEeCCCCcEEEEEEhhhhcccCCcc----ccchhhhhhhhcCCceEEcCCCCH
Q psy4847 55 VYMLSYDAILDFETVSEIMKSGYSRIPVYEDRRTNIVTMFYIKDLALVDPDD----NTPLKTLCQFYQNSCYFVFEDTTL 130 (396)
Q Consensus 55 v~~l~~d~~l~~e~i~~i~~~g~sriPV~~~~~~~IVGiL~vkDLl~~~~~~----~~~l~~v~~~~~~~v~~V~~dt~L 130 (396)
+.+++.++++. ++.+.|.+.++.++||+++ ++++|+++.+||+...... ..++.++ +.+++.++++++++
T Consensus 3 ~~~v~~~~~~~-~~~~~~~~~~~~~~~V~~~--~~~~G~v~~~dl~~~~~~~~~~~~~~~~~~---~~~~~~~v~~~~~l 76 (110)
T cd04609 3 VVSVAPDDTVS-QAIERMREYGVSQLPVVDD--GRVVGSIDESDLLDALIEGKAKFSLPVREV---MGEPLPTVDPDAPI 76 (110)
T ss_pred cEEECCCCcHH-HHHHHHHHcCCceeeEeeC--CeeEEEEeHHHHHHHHhccccccCcCHHHH---hcCCCceeCCCCcH
Confidence 56788999999 9999999999999999976 7899999999997642111 1344444 45788899999999
Q ss_pred HHHHHHHHhcCCceEEEEEEeCCCCCCCCCCceeeeecHHHHHH
Q psy4847 131 DVLLKQFKEGIKGHMAFVHRVNNEGEGDPFYETVGLITLEDVIE 174 (396)
Q Consensus 131 ~~~L~~f~~~~~~h~avV~~~~~~~~~De~g~~vGIVTleDIiE 174 (396)
.+++..|.+. .+ ++|+ |+.|+++|+||.+||+.
T Consensus 77 ~~~~~~~~~~--~~-~~vv--------~~~~~~~Gvvt~~di~~ 109 (110)
T cd04609 77 EELSELLDRG--NV-AVVV--------DEGGKFVGIITRADLLK 109 (110)
T ss_pred HHHHHHHHhC--Cc-eeEE--------ecCCeEEEEEeHHHhhc
Confidence 9999999883 34 4555 66789999999999874
No 75
>TIGR01137 cysta_beta cystathionine beta-synthase. Members of this family closely resemble cysteine synthase but contain an additional C-terminal CBS domain. The function of any bacterial member included in this family is proposed but not proven.
Probab=99.12 E-value=3.5e-10 Score=117.16 Aligned_cols=122 Identities=14% Similarity=0.233 Sum_probs=98.5
Q ss_pred HHHHhcccccccccccccCCCEEEEeCCCChhHHHHHHHHHcCCcEEEEEeCCCCcEEEEEEhhhhccc--CC--ccccc
Q psy4847 34 ISGALELRRKIVGDVMTKLEDVYMLSYDAILDFETVSEIMKSGYSRIPVYEDRRTNIVTMFYIKDLALV--DP--DDNTP 109 (396)
Q Consensus 34 i~~alel~~~tV~dIMtp~~dv~~l~~d~~l~~e~i~~i~~~g~sriPV~~~~~~~IVGiL~vkDLl~~--~~--~~~~~ 109 (396)
..++ |+..+|+++|++. +.++..++++. ++++.|.+.+++.+||++++ ++++|+|+.+|++.. .. ....+
T Consensus 328 ~~~~--l~~~~v~~im~~~--~~~v~~~~tl~-ea~~~m~~~~~~~~~Vvd~~-~~~~Givt~~dl~~~~~~~~~~~~~~ 401 (454)
T TIGR01137 328 VFDV--LKNATVKDLHLPA--PVTVHPTETVG-DAIEILREYGFDQLPVVTEA-GKVLGSVTLRELLSALFAGKANPDDA 401 (454)
T ss_pred HHHH--hccCCHHHhCcCC--CeEECCCCcHH-HHHHHHHHcCCCEEEEEcCC-CeEEEEEEHHHHHHHHhccCCCcCCC
Confidence 4555 7889999999864 78999999999 99999999999999999765 789999999998752 11 11234
Q ss_pred hhhhhhhhcCCceEEcCCCCHHHHHHHHHhcCCceEEEEEEeCCCCCCCCCCceeeeecHHHHHHHH
Q psy4847 110 LKTLCQFYQNSCYFVFEDTTLDVLLKQFKEGIKGHMAFVHRVNNEGEGDPFYETVGLITLEDVIEEL 176 (396)
Q Consensus 110 l~~v~~~~~~~v~~V~~dt~L~~~L~~f~~~~~~h~avV~~~~~~~~~De~g~~vGIVTleDIiEel 176 (396)
+.++| .+++++|++++++.+++..|.+. +.++|. + .|+++|+||..||++.|
T Consensus 402 v~~im---~~~~~~v~~~~~l~~a~~~~~~~---~~~vV~--------~-~g~liGvvt~~dll~~l 453 (454)
T TIGR01137 402 VSKVM---SKKFIQIGEGEKLSDLSKFLEKN---SSAIVT--------E-EGKPIGVVTKIDLLSFL 453 (454)
T ss_pred HHHhc---CCCCeEECCcCcHHHHHHHHHHC---CeeEEE--------E-CCEEEEEEEHHHHHHhh
Confidence 55555 57888999999999999999873 345564 3 58999999999999986
No 76
>cd04640 CBS_pair_27 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.12 E-value=5e-10 Score=94.87 Aligned_cols=106 Identities=16% Similarity=0.243 Sum_probs=81.2
Q ss_pred EEEEeCCCChhHHHHHHHHHcCCcEEEEEeCCCCcEEEEEEhhhhccc-------C---CccccchhhhhhhhcCCce--
Q psy4847 55 VYMLSYDAILDFETVSEIMKSGYSRIPVYEDRRTNIVTMFYIKDLALV-------D---PDDNTPLKTLCQFYQNSCY-- 122 (396)
Q Consensus 55 v~~l~~d~~l~~e~i~~i~~~g~sriPV~~~~~~~IVGiL~vkDLl~~-------~---~~~~~~l~~v~~~~~~~v~-- 122 (396)
+.+++.++++. ++++.|.+.++..+||++++ ++++|+++.+||... . .....++.++| ..+..
T Consensus 3 ~~~v~~~~~i~-~a~~~~~~~~~~~~~V~d~~-~~~~Giv~~~dl~~~~~~~~~~~~~~~~~~~~v~~im---~~~~~~~ 77 (126)
T cd04640 3 PIVIPADTSID-EALELMIKHGVRLLLVVDSD-DNFIGVITAVDLLGEEPIKRIQEGGISRSELTVADVM---TPKEDLK 77 (126)
T ss_pred CeEECCCCcHH-HHHHHHHHcCCcEEEEEcCC-CcEEEEEEHHHHhhChhhHHHHHcCCCchheEHHHhc---Cchhhhc
Confidence 56789999999 99999988999999999765 789999999998741 1 11123455555 34332
Q ss_pred EE----cCCCCHHHHHHHHHhcCCceEEEEEEeCCCCCCCCC-CceeeeecHHHHHH
Q psy4847 123 FV----FEDTTLDVLLKQFKEGIKGHMAFVHRVNNEGEGDPF-YETVGLITLEDVIE 174 (396)
Q Consensus 123 ~V----~~dt~L~~~L~~f~~~~~~h~avV~~~~~~~~~De~-g~~vGIVTleDIiE 174 (396)
.+ .+++++.++++.|.++ +.+.++|+ |+. |.++|+||++||++
T Consensus 78 ~~~~~~~~~~~l~~~l~~m~~~-~~~~lpVv--------d~~~~~~~G~it~~di~~ 125 (126)
T cd04640 78 ALDLEELENASVGDVVETLKAS-GRQHALVV--------DREHHQIRGIISTSDIAR 125 (126)
T ss_pred cccHHHhccCcHHHHHHHHHHC-CCceEEEE--------ECCCCEEEEEEeHHHHhh
Confidence 23 3789999999999985 77777777 554 78999999999975
No 77
>cd04591 CBS_pair_EriC_assoc_euk_bac This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the EriC CIC-type chloride channels in eukaryotes and bacteria. These ion channels are proteins with a seemingly simple task of allowing the passive flow of chloride ions across biological membranes. CIC-type chloride channels come from all kingdoms of life, have several gene families, and can be gated by voltage. The members of the CIC-type chloride channel are double-barreled: two proteins forming homodimers at a broad interface formed by four helices from each protein. The two pores are not found at this interface, but are completely contained within each subunit, as deduced from the mutational analyses, unlike many other channels, in which four or five identical or structurally related subunits jointly form one pore. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS
Probab=99.10 E-value=4.9e-10 Score=92.53 Aligned_cols=101 Identities=19% Similarity=0.233 Sum_probs=83.9
Q ss_pred CCEEEEeCCCChhHHHHHHHHHcCCcEEEEEeCC--CCcEEEEEEhhhhcccCCccccchhhhhhhhcCCceEEcCCCCH
Q psy4847 53 EDVYMLSYDAILDFETVSEIMKSGYSRIPVYEDR--RTNIVTMFYIKDLALVDPDDNTPLKTLCQFYQNSCYFVFEDTTL 130 (396)
Q Consensus 53 ~dv~~l~~d~~l~~e~i~~i~~~g~sriPV~~~~--~~~IVGiL~vkDLl~~~~~~~~~l~~v~~~~~~~v~~V~~dt~L 130 (396)
.++..++++.++. ++.+.+.+.+++++||+++. .++++|+|+.+||...... +|.+++.++++++++
T Consensus 2 ~~~~~~~~~~~~~-~~~~~~~~~~~~~~~V~~~~~~~~~~~G~v~~~dl~~~~~~----------~m~~~~~~v~~~~~l 70 (105)
T cd04591 2 PLVVLLPEGMTVE-DLESLLSTTSHNGFPVVDSTEESPRLVGYILRSQLVVALKN----------YIDPSPFTVSPRTSL 70 (105)
T ss_pred CceEEecccccHH-HHHHHHHhCCCCCcceEcCCCCCCEEEEEEeHHHHHHHHHH----------hccCCCceECCCCcH
Confidence 3467889999999 99999999999999999762 3789999999999753221 335778899999999
Q ss_pred HHHHHHHHhcCCceEEEEEEeCCCCCCCCCCceeeeecHHHHHH
Q psy4847 131 DVLLKQFKEGIKGHMAFVHRVNNEGEGDPFYETVGLITLEDVIE 174 (396)
Q Consensus 131 ~~~L~~f~~~~~~h~avV~~~~~~~~~De~g~~vGIVTleDIiE 174 (396)
.+++..|++. +.+.++|+ + .|+++|+||..|+++
T Consensus 71 ~~~~~~~~~~-~~~~~pVv--------~-~~~~~Gvvt~~dl~~ 104 (105)
T cd04591 71 EKVHQLFRKL-GLRHLLVV--------D-EGRLVGIITRKDLLK 104 (105)
T ss_pred HHHHHHHHHc-CCCEEEEE--------E-CCeEEEEEEhhhhhc
Confidence 9999999985 77777776 3 479999999999975
No 78
>cd04620 CBS_pair_7 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera
Probab=99.09 E-value=1.1e-09 Score=90.60 Aligned_cols=105 Identities=16% Similarity=0.235 Sum_probs=82.6
Q ss_pred EEEEeCCCChhHHHHHHHHHcC-CcEEEEEeCCCCcEEEEEEhhhhcccCCc----cccchhhhhhhhcCCceEEcCC--
Q psy4847 55 VYMLSYDAILDFETVSEIMKSG-YSRIPVYEDRRTNIVTMFYIKDLALVDPD----DNTPLKTLCQFYQNSCYFVFED-- 127 (396)
Q Consensus 55 v~~l~~d~~l~~e~i~~i~~~g-~sriPV~~~~~~~IVGiL~vkDLl~~~~~----~~~~l~~v~~~~~~~v~~V~~d-- 127 (396)
+..++.+.++. ++.+.|.+.+ +..+||.++ ++++|+|+.+||+..... ...++.++ +.++++++.++
T Consensus 3 ~~~~~~~~~~~-~~~~~~~~~~~~~~~~v~~~--~~~~G~v~~~dl~~~~~~~~~~~~~~i~~~---~~~~~~~v~~~~~ 76 (115)
T cd04620 3 PLTVTPDTPVA-DAIALMSQQGDSSCVLVVEK--GRLLGIFTERDIVRLTAIGKDLSDLPIGEV---MTQPVVTLQESEI 76 (115)
T ss_pred CeEeCCCCcHH-HHHHHHHhcCCCceEEEcCC--CcEEEEEeHHHHHHHHhcCCCccccCHHHh---cCCCcEEEecccc
Confidence 45788999999 9999998888 677787763 789999999999753211 12344444 45778889887
Q ss_pred CCHHHHHHHHHhcCCceEEEEEEeCCCCCCCCCCceeeeecHHHHHH
Q psy4847 128 TTLDVLLKQFKEGIKGHMAFVHRVNNEGEGDPFYETVGLITLEDVIE 174 (396)
Q Consensus 128 t~L~~~L~~f~~~~~~h~avV~~~~~~~~~De~g~~vGIVTleDIiE 174 (396)
+++.+++..|.+. ..+.++|+ |+.|+++|+||.+||+.
T Consensus 77 ~~l~~a~~~~~~~-~~~~~pVv--------d~~~~~~Gvit~~dl~~ 114 (115)
T cd04620 77 QDIFTALSLFRQH-QIRHLPVL--------DDQGQLIGLVTAESIRQ 114 (115)
T ss_pred cCHHHHHHHHHHh-CCceEEEE--------cCCCCEEEEEEhHHhhc
Confidence 7899999999995 77777787 77799999999999974
No 79
>PLN02274 inosine-5'-monophosphate dehydrogenase
Probab=99.09 E-value=1.6e-09 Score=113.80 Aligned_cols=128 Identities=17% Similarity=0.108 Sum_probs=103.8
Q ss_pred HHHHHHHHHhcccccccccccccCCCEEEEeCCCChhHHHHHHHHHcCCcEEEEEeCC--CCcEEEEEEhhhhcccCCcc
Q psy4847 29 DEVNIISGALELRRKIVGDVMTKLEDVYMLSYDAILDFETVSEIMKSGYSRIPVYEDR--RTNIVTMFYIKDLALVDPDD 106 (396)
Q Consensus 29 ~E~~~i~~alel~~~tV~dIMtp~~dv~~l~~d~~l~~e~i~~i~~~g~sriPV~~~~--~~~IVGiL~vkDLl~~~~~~ 106 (396)
+....++.++.+ +..|++ +++++++++++. ++++.|.+++++.+||++++ .++++|+|+.+||.... ..
T Consensus 91 ~q~~~Irkvk~~-----~~gmi~--dpvtV~pd~tV~-dA~~lm~~~~~~~lpVvD~~~~~GklvGIVT~~DL~~v~-~~ 161 (505)
T PLN02274 91 EQAAIVRKAKSR-----RVGFVS--DPVVKSPSSTIS-SLDELKASRGFSSVCVTETGTMGSKLLGYVTKRDWDFVN-DR 161 (505)
T ss_pred HHHHHHHHhhcc-----cccccC--CCeeeCCCCcHH-HHHHHHHhcCCceEEEEeCCCcCCeEEEEEEHHHHhhcc-cc
Confidence 345677777644 222663 478999999999 99999999999999999763 37899999999997654 23
Q ss_pred ccchhhhhhhhcCC--ceEEcCCCCHHHHHHHHHhcCCceEEEEEEeCCCCCCCCCCceeeeecHHHHHHHHH
Q psy4847 107 NTPLKTLCQFYQNS--CYFVFEDTTLDVLLKQFKEGIKGHMAFVHRVNNEGEGDPFYETVGLITLEDVIEELI 177 (396)
Q Consensus 107 ~~~l~~v~~~~~~~--v~~V~~dt~L~~~L~~f~~~~~~h~avV~~~~~~~~~De~g~~vGIVTleDIiEeli 177 (396)
..++.++|. .+ ++++++++++.++++.|.+. +.+.++|+ |+.++++|+||..||+..+.
T Consensus 162 ~~~V~eIMt---~~~~lvtv~~~~sL~eAl~~m~~~-~~~~LPVV--------D~~g~LvGvITr~DIlk~~~ 222 (505)
T PLN02274 162 ETKLSEVMT---SDDDLVTAPAGIDLEEAEAVLKDS-KKGKLPLV--------NEDGELVDLVTRTDVKRVKG 222 (505)
T ss_pred CCcHHHHhc---cCCCcEEECCCCCHHHHHHHHHHc-CCCEEEEE--------cCCCeEEEEEEHHHHHHHhh
Confidence 456777764 44 78999999999999999995 77888888 77889999999999999886
No 80
>cd04637 CBS_pair_24 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.09 E-value=8.7e-10 Score=92.18 Aligned_cols=109 Identities=23% Similarity=0.199 Sum_probs=85.5
Q ss_pred CEEEEeCCCChhHHHHHHHHHcCCcEEEEEeCCCCcEEEEEEhhhhcccCCc----------c-ccchhhhhhhhcCCce
Q psy4847 54 DVYMLSYDAILDFETVSEIMKSGYSRIPVYEDRRTNIVTMFYIKDLALVDPD----------D-NTPLKTLCQFYQNSCY 122 (396)
Q Consensus 54 dv~~l~~d~~l~~e~i~~i~~~g~sriPV~~~~~~~IVGiL~vkDLl~~~~~----------~-~~~l~~v~~~~~~~v~ 122 (396)
++..++.+.++. ++++.+.+.+++++||+++ ++++|+++.+||+..... + ...-..+.+++.++++
T Consensus 2 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~V~d~--~~~~G~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 78 (122)
T cd04637 2 RVVTVEMDDRLE-EVREIFEKHKFHHLLVVED--NELVGVISDRDYLKAISPFLGTAGETEKDLATLNRRAHQIMTRDPI 78 (122)
T ss_pred CceEeCCCCCHH-HHHHHHHhCCCCEEEEEeC--CeEEEEEEHHHHHHHHHHHhccccchHHHHHHHHhHHHHhhcCCCe
Confidence 356789999999 9999999999999999985 789999999999642100 0 0001123344457889
Q ss_pred EEcCCCCHHHHHHHHHhcCCceEEEEEEeCCCCCCCCCCceeeeecHHHHHH
Q psy4847 123 FVFEDTTLDVLLKQFKEGIKGHMAFVHRVNNEGEGDPFYETVGLITLEDVIE 174 (396)
Q Consensus 123 ~V~~dt~L~~~L~~f~~~~~~h~avV~~~~~~~~~De~g~~vGIVTleDIiE 174 (396)
++++++++.++++.|.+. ..+.++|+ |+.|+++|+||+.|+++
T Consensus 79 ~v~~~~~l~~~~~~~~~~-~~~~~~vv--------~~~~~~~Gvit~~dll~ 121 (122)
T cd04637 79 TVSPDTPVDEASKLLLEN-SISCLPVV--------DENGQLIGIITWKDLLK 121 (122)
T ss_pred eeCCCCcHHHHHHHHHHc-CCCeEeEE--------CCCCCEEEEEEHHHhhh
Confidence 999999999999999985 66777777 77789999999999985
No 81
>cd04802 CBS_pair_3 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera
Probab=99.08 E-value=1.3e-09 Score=89.49 Aligned_cols=105 Identities=17% Similarity=0.201 Sum_probs=84.0
Q ss_pred CEEEEeCCCChhHHHHHHHHHcCCcEEEEEeCCCCcEEEEEEhhhhcccC--Cc---cccchhhhhhhhcCCceEEcCCC
Q psy4847 54 DVYMLSYDAILDFETVSEIMKSGYSRIPVYEDRRTNIVTMFYIKDLALVD--PD---DNTPLKTLCQFYQNSCYFVFEDT 128 (396)
Q Consensus 54 dv~~l~~d~~l~~e~i~~i~~~g~sriPV~~~~~~~IVGiL~vkDLl~~~--~~---~~~~l~~v~~~~~~~v~~V~~dt 128 (396)
++..++.++++. ++++.|.+.+++.+||+++ ++++|+++.+|++... .. ...++.++ +.++++++++++
T Consensus 2 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~v~~~--~~~~G~v~~~dl~~~~~~~~~~~~~~~~~~~---~~~~~~~v~~~~ 75 (112)
T cd04802 2 NVITVDPDTTVY-EAANIMTENNIGRLIVVDN--EKPVGIITERDLVKKVVSRNLKPREVPVGEV---MSTPLITIDPNA 75 (112)
T ss_pred CcEEECCCCCHH-HHHHHHHHCCCCEEEEEEC--CEEEEEEEHHHHHHHHhhccCCcccCCHHHh---cCCCcEEECCCC
Confidence 356789999999 9999999999999999986 4899999999997521 11 12344444 457889999999
Q ss_pred CHHHHHHHHHhcCCceEEEEEEeCCCCCCCCCCceeeeecHHHHHH
Q psy4847 129 TLDVLLKQFKEGIKGHMAFVHRVNNEGEGDPFYETVGLITLEDVIE 174 (396)
Q Consensus 129 ~L~~~L~~f~~~~~~h~avV~~~~~~~~~De~g~~vGIVTleDIiE 174 (396)
++.++++.|.+. ..+.++|+ |+. +++|+||..||++
T Consensus 76 ~l~~~~~~~~~~-~~~~~~Vv--------~~~-~~~Gvi~~~di~~ 111 (112)
T cd04802 76 SLNEAAKLMAKH-GIKRLPVV--------DDD-ELVGIVTTTDIVM 111 (112)
T ss_pred CHHHHHHHHHHc-CCCeeEEe--------eCC-EEEEEEEhhhhhc
Confidence 999999999985 67667776 554 8999999999974
No 82
>PRK07107 inosine 5-monophosphate dehydrogenase; Validated
Probab=99.08 E-value=8.1e-10 Score=115.96 Aligned_cols=110 Identities=19% Similarity=0.086 Sum_probs=91.1
Q ss_pred EEEeCCCChhHHHHHHHHHcCCcEEEEEeCC--CCcEEEEEEhhhhcccCCccccchhhhhhhhcCCceEEcCCCCHHHH
Q psy4847 56 YMLSYDAILDFETVSEIMKSGYSRIPVYEDR--RTNIVTMFYIKDLALVDPDDNTPLKTLCQFYQNSCYFVFEDTTLDVL 133 (396)
Q Consensus 56 ~~l~~d~~l~~e~i~~i~~~g~sriPV~~~~--~~~IVGiL~vkDLl~~~~~~~~~l~~v~~~~~~~v~~V~~dt~L~~~ 133 (396)
.++++++++. ++++.|.+.+++.+||+++. .++++|+|+.+||.........++.++|.. ..++.++.+++++.++
T Consensus 108 ~tV~pd~tl~-eAl~~m~~~~~~~vpVVD~~~~~gkLvGIVT~~DLr~~~~~~~~~V~dIMt~-~~~~itv~~d~~l~eA 185 (502)
T PRK07107 108 SNLTPDNTLA-DVLDLKEKTGHSTVAVTEDGTAHGKLLGIVTSRDYRISRMSLDTKVKDFMTP-FEKLVTANEGTTLKEA 185 (502)
T ss_pred CEeCCCCcHH-HHHHHHHhcCCCeEEEEeCCCcCCEEEEEEEcHHhhccccCCCCCHHHHhCC-CCCeEEECCCCcHHHH
Confidence 4789999999 99999999999999999862 479999999999975432334567777641 1267889999999999
Q ss_pred HHHHHhcCCceEEEEEEeCCCCCCCCCCceeeeecHHHHHHHH
Q psy4847 134 LKQFKEGIKGHMAFVHRVNNEGEGDPFYETVGLITLEDVIEEL 176 (396)
Q Consensus 134 L~~f~~~~~~h~avV~~~~~~~~~De~g~~vGIVTleDIiEel 176 (396)
++.|.++ +.+.++|+ |+.|+++||||..||++..
T Consensus 186 l~lM~e~-~i~~LPVV--------D~~g~LvGIIT~~Dilk~~ 219 (502)
T PRK07107 186 NDIIWDH-KLNTLPIV--------DKNGNLVYLVFRKDYDSHK 219 (502)
T ss_pred HHHHHHc-CCCEEEEE--------cCCCeEEEEEEhHHHHhcc
Confidence 9999995 77777787 7788999999999999853
No 83
>cd04633 CBS_pair_20 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.07 E-value=1e-09 Score=91.44 Aligned_cols=104 Identities=22% Similarity=0.243 Sum_probs=84.5
Q ss_pred EEEEeCCCChhHHHHHHHHHcCCcEEEEEeCCCCcEEEEEEhhhhcccCCc--------------cccchhhhhhhhcCC
Q psy4847 55 VYMLSYDAILDFETVSEIMKSGYSRIPVYEDRRTNIVTMFYIKDLALVDPD--------------DNTPLKTLCQFYQNS 120 (396)
Q Consensus 55 v~~l~~d~~l~~e~i~~i~~~g~sriPV~~~~~~~IVGiL~vkDLl~~~~~--------------~~~~l~~v~~~~~~~ 120 (396)
+..++.+.++. ++.+.|.+.++.++||+++ ++++|+++.+|++..... ...++.+++ ..+
T Consensus 3 ~~~i~~~~~~~-~~~~~l~~~~~~~i~V~~~--~~~~G~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~ 76 (121)
T cd04633 3 VITVSPDDRVS-HARRLMLDHDISRLPVIEG--GKLVGIVTEKDIADALRSFRPLVRDRHQERRIRNLPVSDIM---TRP 76 (121)
T ss_pred CEEECCCCcHH-HHHHHHHHcCCCeeEEEEC--CEEEEEEchHHHHHhhhhhhhcccchhhhhhhhccCHHHHc---cCC
Confidence 56789999999 9999998899999999985 899999999998743111 122444444 578
Q ss_pred ceEEcCCCCHHHHHHHHHhcCCceEEEEEEeCCCCCCCCCCceeeeecHHHHHH
Q psy4847 121 CYFVFEDTTLDVLLKQFKEGIKGHMAFVHRVNNEGEGDPFYETVGLITLEDVIE 174 (396)
Q Consensus 121 v~~V~~dt~L~~~L~~f~~~~~~h~avV~~~~~~~~~De~g~~vGIVTleDIiE 174 (396)
+.++++++++.+++..|.+. ..+.++|+ |+ |+++|+||..|++.
T Consensus 77 ~~~v~~~~~l~~~~~~~~~~-~~~~~~Vv--------~~-~~~~Gvi~~~dl~~ 120 (121)
T cd04633 77 VITIEPDTSVSDVASLMLEN-NIGGLPVV--------DD-GKLVGIVTRTDILR 120 (121)
T ss_pred ceEECCCCcHHHHHHHHHHc-CCCcccEE--------EC-CEEEEEEEHHHhhc
Confidence 89999999999999999985 66667777 66 89999999999975
No 84
>cd04634 CBS_pair_21 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.04 E-value=1.5e-09 Score=94.50 Aligned_cols=108 Identities=16% Similarity=0.166 Sum_probs=84.8
Q ss_pred CEEEEeCCCChhHHHHHHHHHcCCcEEEEEeCCCCcEEEEEEhhhhcccC--Ccc--c----------------------
Q psy4847 54 DVYMLSYDAILDFETVSEIMKSGYSRIPVYEDRRTNIVTMFYIKDLALVD--PDD--N---------------------- 107 (396)
Q Consensus 54 dv~~l~~d~~l~~e~i~~i~~~g~sriPV~~~~~~~IVGiL~vkDLl~~~--~~~--~---------------------- 107 (396)
++++++.+.++. ++++.|.+.+++.+||+++ ++++|+++.+|++... ... .
T Consensus 2 ~~~~v~~~~~~~-~~~~~~~~~~~~~~~Vvd~--~~~~G~v~~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 78 (143)
T cd04634 2 NPITCNADDTIS-DAARLLRENKISGAPVLDG--GKLVGIVSESDILKLLVTHDPSGNLWLPSPLELIELPLREFINWEE 78 (143)
T ss_pred CcEEecCCCCHH-HHHHHHHHcCCCcceEeEC--CeEEEEecHHHHHHHHHhccCccccccCCcceeeeccchheeehHH
Confidence 367889999999 9999999999999999985 7899999999986421 110 0
Q ss_pred -------cchhhhhhhhcCCceEEcCCCCHHHHHHHHHhcCCceEEEEEEeCCCCCCCCCCceeeeecHHHHHH
Q psy4847 108 -------TPLKTLCQFYQNSCYFVFEDTTLDVLLKQFKEGIKGHMAFVHRVNNEGEGDPFYETVGLITLEDVIE 174 (396)
Q Consensus 108 -------~~l~~v~~~~~~~v~~V~~dt~L~~~L~~f~~~~~~h~avV~~~~~~~~~De~g~~vGIVTleDIiE 174 (396)
.+...+.+++.++++++++++++.+++..|.+. +.+.++|+ ++ |+++|+||..|+++
T Consensus 79 ~~~~~~~~~~~~v~~~~~~~~~~v~~~~~l~~a~~~~~~~-~~~~~~Vv--------~~-~~~~Gvvt~~dl~~ 142 (143)
T cd04634 79 TKRALTDAGKMKVRDIMTKKVITISPDASIEDAAELMVRH-KIKRLPVV--------ED-GRLVGIVTRGDIIE 142 (143)
T ss_pred HHHHHHHHhcCCHHHHcCCCCeEECCCCcHHHHHHHHHHc-CCCEEEEE--------EC-CEEEEEEEHHHhhc
Confidence 011224444567899999999999999999985 66666676 55 89999999999975
No 85
>PTZ00314 inosine-5'-monophosphate dehydrogenase; Provisional
Probab=99.03 E-value=1.7e-09 Score=113.59 Aligned_cols=118 Identities=16% Similarity=0.184 Sum_probs=98.4
Q ss_pred ccccccccCCCEEEEeCCCChhHHHHHHHHHcCCcEEEEEeCC--CCcEEEEEEhhhhcccCCccccchhhhhhhhcC--
Q psy4847 44 IVGDVMTKLEDVYMLSYDAILDFETVSEIMKSGYSRIPVYEDR--RTNIVTMFYIKDLALVDPDDNTPLKTLCQFYQN-- 119 (396)
Q Consensus 44 tV~dIMtp~~dv~~l~~d~~l~~e~i~~i~~~g~sriPV~~~~--~~~IVGiL~vkDLl~~~~~~~~~l~~v~~~~~~-- 119 (396)
++.+.|.+ +++++++++++. ++++.|.+.+++.+||++++ .++++|+|+.+||..... ...+++++|. +
T Consensus 97 ~~e~g~i~--dpvtv~pd~tv~-eA~~lm~~~~~s~vpVvd~~~~~gkLvGIVt~~DL~~~~~-~~~~V~diMt---~~~ 169 (495)
T PTZ00314 97 RFENGFIM--DPYVLSPNHTVA-DVLEIKEKKGFSSILITVDGKVGGKLLGIVTSRDIDFVKD-KSTPVSEVMT---PRE 169 (495)
T ss_pred cccccccc--CCeecCCCCCHH-HHHHHHHHcCCcEEEEEeCCccCCeEEEEEEHHHHhhccc-CCCCHHHhhC---CcC
Confidence 35567764 367999999999 99999999999999999763 368999999999986543 2356777763 4
Q ss_pred CceEEcCCCCHHHHHHHHHhcCCceEEEEEEeCCCCCCCCCCceeeeecHHHHHHHHH
Q psy4847 120 SCYFVFEDTTLDVLLKQFKEGIKGHMAFVHRVNNEGEGDPFYETVGLITLEDVIEELI 177 (396)
Q Consensus 120 ~v~~V~~dt~L~~~L~~f~~~~~~h~avV~~~~~~~~~De~g~~vGIVTleDIiEeli 177 (396)
++.++++++++.++++.|.+. +.+.++|+ |+.++++|+||..||++...
T Consensus 170 ~lvtv~~~~sl~eAl~lm~e~-~i~~LPVV--------d~~g~liGIIT~~DIl~~~~ 218 (495)
T PTZ00314 170 KLVVGNTPISLEEANEVLRES-RKGKLPIV--------NDNGELVALVSRSDLKKNRG 218 (495)
T ss_pred CceEeCCCCCHHHHHHHHHHc-CCCeEEEE--------cCCCcEEEEEEehHhhhccc
Confidence 788999999999999999995 78888888 88899999999999998753
No 86
>TIGR01303 IMP_DH_rel_1 IMP dehydrogenase family protein. This model represents a family of proteins, often annotated as a putative IMP dehydrogenase, related to IMP dehydrogenase and GMP reductase and restricted to the high GC Gram-positive bacteria. All species in which a member is found so far (Corynebacterium glutamicum, Mycobacterium tuberculosis, Streptomyces coelicolor, etc.) also have IMP dehydrogenase as described by TIGRFAMs entry TIGR01302.
Probab=99.03 E-value=2.6e-09 Score=111.47 Aligned_cols=120 Identities=15% Similarity=0.079 Sum_probs=101.1
Q ss_pred ccccccccccccCCCEEEEeCCCChhHHHHHHHHHcCCcEEEEEeCCCCcEEEEEEhhhhcccCCccccchhhhhhhhcC
Q psy4847 40 LRRKIVGDVMTKLEDVYMLSYDAILDFETVSEIMKSGYSRIPVYEDRRTNIVTMFYIKDLALVDPDDNTPLKTLCQFYQN 119 (396)
Q Consensus 40 l~~~tV~dIMtp~~dv~~l~~d~~l~~e~i~~i~~~g~sriPV~~~~~~~IVGiL~vkDLl~~~~~~~~~l~~v~~~~~~ 119 (396)
++..++.++|++. ++++++++++. ++.+.|.+.+++.+||+++ ++++|+|+.+||...+.. .++.++| ..
T Consensus 85 v~~VKv~eim~~~--pvtv~p~~tI~-eA~~lm~~~~~~~~vVvD~--gklvGIVT~rDL~~~~~~--~~V~dIM---t~ 154 (475)
T TIGR01303 85 VAFVKSRDLVLDT--PITLAPHDTVS-DAMALIHKRAHGAAVVILE--DRPVGLVTDSDLLGVDRF--TQVRDIM---ST 154 (475)
T ss_pred HhhcchhhccccC--CeEECCCCCHH-HHHHHHHhcCCeEEEEEEC--CEEEEEEEHHHhhcCCCC--CCHHHHc---cC
Confidence 3466788999864 78899999999 9999999999999999875 689999999999765433 4677776 47
Q ss_pred CceEEcCCCCHHHHHHHHHhcCCceEEEEEEeCCCCCCCCCCceeeeecHHHHHHHHHh
Q psy4847 120 SCYFVFEDTTLDVLLKQFKEGIKGHMAFVHRVNNEGEGDPFYETVGLITLEDVIEELIQ 178 (396)
Q Consensus 120 ~v~~V~~dt~L~~~L~~f~~~~~~h~avV~~~~~~~~~De~g~~vGIVTleDIiEeli~ 178 (396)
+++++++++++.+++..|.++ +.+.++|+ |+.|+++|+||..||+.....
T Consensus 155 ~litv~~~~sL~eAl~lM~~~-~i~~LPVV--------D~~g~LvGIIT~~DLl~~~~~ 204 (475)
T TIGR01303 155 DLVTAPADTEPRKAFDLLEHA-PRDVAPLV--------DADGTLAGILTRTGALRATIY 204 (475)
T ss_pred CceEeCCCCcHHHHHHHHHHc-CCCEEEEE--------cCCCeEEEEEEHHHHHHHHhC
Confidence 899999999999999999995 67777777 778899999999999987753
No 87
>cd04625 CBS_pair_12 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.01 E-value=2.8e-09 Score=87.62 Aligned_cols=105 Identities=16% Similarity=0.272 Sum_probs=82.9
Q ss_pred CEEEEeCCCChhHHHHHHHHHcCCcEEEEEeCCCCcEEEEEEhhhhcccCCc-----cccchhhhhhhhcCCceEEcCCC
Q psy4847 54 DVYMLSYDAILDFETVSEIMKSGYSRIPVYEDRRTNIVTMFYIKDLALVDPD-----DNTPLKTLCQFYQNSCYFVFEDT 128 (396)
Q Consensus 54 dv~~l~~d~~l~~e~i~~i~~~g~sriPV~~~~~~~IVGiL~vkDLl~~~~~-----~~~~l~~v~~~~~~~v~~V~~dt 128 (396)
++..++.++++. ++++.|.+.++..+||.++ ++++|+++.+||+..... ...++.+++ ..++.++.+++
T Consensus 2 ~~~~v~~~~~~~-~~~~~~~~~~~~~~~v~~~--~~~~G~v~~~dl~~~~~~~~~~~~~~~v~~~~---~~~~~~v~~~~ 75 (112)
T cd04625 2 TIYTVAPETLLS-EAVATMAEQDLGSLVVMER--GELVGLLTFREVLQAMAQHGAGVLDTTVRAIM---NPEPIVASPDD 75 (112)
T ss_pred CcEEECCCCcHH-HHHHHHHHcCCCeEEEeeC--CEEEEEEEHHHHHHHHHhcCCchhcCCHHHHh---CCCCeEECCCC
Confidence 467889999999 9999888888888877753 789999999999743111 123455555 46788999999
Q ss_pred CHHHHHHHHHhcCCceEEEEEEeCCCCCCCCCCceeeeecHHHHHH
Q psy4847 129 TLDVLLKQFKEGIKGHMAFVHRVNNEGEGDPFYETVGLITLEDVIE 174 (396)
Q Consensus 129 ~L~~~L~~f~~~~~~h~avV~~~~~~~~~De~g~~vGIVTleDIiE 174 (396)
++.++++.|.+. ..+.++|+ |+ |+++|+||..||+.
T Consensus 76 ~l~~a~~~m~~~-~~~~l~Vv--------~~-~~~~Gvvt~~dl~~ 111 (112)
T cd04625 76 SIDEVRRLMVER-HLRYLPVL--------DG-GTLLGVISFHDVAK 111 (112)
T ss_pred CHHHHHHHHHHc-CCCeeeEE--------EC-CEEEEEEEHHHhhc
Confidence 999999999984 66666776 54 89999999999975
No 88
>cd04598 CBS_pair_GGDEF_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with the GGDEF (DiGuanylate-Cyclase (DGC)) domain. The GGDEF domain has been suggested to be homologous to the adenylyl cyclase catalytic domain and is thought to be involved in regulating cell surface adhesiveness in bacteria. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=99.01 E-value=2.7e-09 Score=88.59 Aligned_cols=105 Identities=15% Similarity=0.222 Sum_probs=81.8
Q ss_pred EEEEeCCCChhHHHHHHHHHcC-CcEEEEEeCCCCcEEEEEEhhhhcccCCc-------cccchhhhhhhhcCCceEEcC
Q psy4847 55 VYMLSYDAILDFETVSEIMKSG-YSRIPVYEDRRTNIVTMFYIKDLALVDPD-------DNTPLKTLCQFYQNSCYFVFE 126 (396)
Q Consensus 55 v~~l~~d~~l~~e~i~~i~~~g-~sriPV~~~~~~~IVGiL~vkDLl~~~~~-------~~~~l~~v~~~~~~~v~~V~~ 126 (396)
+..++.++++. ++++.+...+ ++.+||+++ ++++|+++.+||+..... ...++.++| ..++..+++
T Consensus 3 ~~~~~~~~~~~-~~~~~~~~~~~~~~~~Vvd~--~~~~G~v~~~~l~~~~~~~~~~~~~~~~~v~~~~---~~~~~~v~~ 76 (119)
T cd04598 3 APTVSPDTTVN-DVLERFERDPDLSALAVVDD--GRPVGLIMREALMELLSTPYGRALYGKKPVSEVM---DPDPLIVEA 76 (119)
T ss_pred cCccCCCCcHH-HHHHHHHhCCCccEEEEEEC--CeeEEEEEHHHHHHHHhchhhHHHHcCCcHHHhc---CCCcEEecC
Confidence 55788999999 9999988777 899999986 899999999998743111 123455554 578899999
Q ss_pred CCCHHHHHHHHHhcCCc-eE--EEEEEeCCCCCCCCCCceeeeecHHHHHH
Q psy4847 127 DTTLDVLLKQFKEGIKG-HM--AFVHRVNNEGEGDPFYETVGLITLEDVIE 174 (396)
Q Consensus 127 dt~L~~~L~~f~~~~~~-h~--avV~~~~~~~~~De~g~~vGIVTleDIiE 174 (396)
++++.+++..|.+. .. ++ .+|+ ++.|+++|+||..|+++
T Consensus 77 ~~~~~~~~~~~~~~-~~~~~~~~~vv--------~~~~~~~Gvvs~~di~~ 118 (119)
T cd04598 77 DTPLEEVSRLATGR-DSQNLYDGFIV--------TEEGRYLGIGTVKDLLR 118 (119)
T ss_pred CCCHHHHHHHHHcC-CcccccccEEE--------eeCCeEEEEEEHHHHhc
Confidence 99999999999874 42 22 2355 56799999999999975
No 89
>TIGR00393 kpsF KpsF/GutQ family protein. This model describes a number of closely related proteins with the phosphosugar-binding domain SIS (Sugar ISomerase) followed by two copies of the CBS (named after Cystathionine Beta Synthase) domain. One is GutQ, a protein of the glucitol operon. Another is KpsF, a virulence factor involved in capsular polysialic acid biosynthesis in some pathogenic strains of E. coli.
Probab=98.97 E-value=2.9e-09 Score=102.42 Aligned_cols=111 Identities=15% Similarity=0.138 Sum_probs=91.4
Q ss_pred cccccccccCCCEEEEeCCCChhHHHHHHHHHcCCcEEEEEeCCCCcEEEEEEhhhhcccCC---ccccchhhhhhhhcC
Q psy4847 43 KIVGDVMTKLEDVYMLSYDAILDFETVSEIMKSGYSRIPVYEDRRTNIVTMFYIKDLALVDP---DDNTPLKTLCQFYQN 119 (396)
Q Consensus 43 ~tV~dIMtp~~dv~~l~~d~~l~~e~i~~i~~~g~sriPV~~~~~~~IVGiL~vkDLl~~~~---~~~~~l~~v~~~~~~ 119 (396)
.+|+++|.+. ++..++.++++. ++++.|.+.++..+||++++ ++++|+++.+||+.... ....++++++ .+
T Consensus 155 ~~v~~im~~~-~~~~v~~~~~v~-~a~~~~~~~~~~~~~Vvd~~-g~~~Givt~~dl~~~~~~~~~~~~~v~~im---~~ 228 (268)
T TIGR00393 155 VKVKDLMQTT-DLPLIAPTTSFK-DALLEMSEKRLGSAIVCDEN-NQLVGVFTDGDLRRALLGGGSLKSEVRDFM---TL 228 (268)
T ss_pred hhHHHHhCCC-CCCcCCCCCcHH-HHHHHHhhcCCcEEEEEeCC-CCEEEEEEcHHHHHHHhcCCcccCcHHHhC---CC
Confidence 6899999864 267899999999 99999998999999999865 78999999999975321 1234566665 47
Q ss_pred CceEEcCCCCHHHHHHHHHhcCCceEEEEEEeCCCCCCCCCCceeeeec
Q psy4847 120 SCYFVFEDTTLDVLLKQFKEGIKGHMAFVHRVNNEGEGDPFYETVGLIT 168 (396)
Q Consensus 120 ~v~~V~~dt~L~~~L~~f~~~~~~h~avV~~~~~~~~~De~g~~vGIVT 168 (396)
+++.|.+++++.++++.|.+. +.+.++|+ |+.|+++|+|+
T Consensus 229 ~~~~v~~~~~l~~a~~~m~~~-~~~~lpVv--------d~~g~l~GvI~ 268 (268)
T TIGR00393 229 GPKTFKLDALLLEALEFLERR-KITSLVVV--------DDHNKVLGVLH 268 (268)
T ss_pred CCeEECCCCcHHHHHHHHHHc-CCcEEEEE--------CCCCeEEEEEC
Confidence 888999999999999999995 77777777 77789999985
No 90
>COG0517 FOG: CBS domain [General function prediction only]
Probab=98.92 E-value=1.5e-08 Score=83.57 Aligned_cols=111 Identities=27% Similarity=0.337 Sum_probs=87.4
Q ss_pred ccccccCCCEEEEeCCCChhHHHHHHHHHcCCcEEEEEeCCCCcEEEEEEhhhhcccCCcc--cc-chhhhhhhhcCCce
Q psy4847 46 GDVMTKLEDVYMLSYDAILDFETVSEIMKSGYSRIPVYEDRRTNIVTMFYIKDLALVDPDD--NT-PLKTLCQFYQNSCY 122 (396)
Q Consensus 46 ~dIMtp~~dv~~l~~d~~l~~e~i~~i~~~g~sriPV~~~~~~~IVGiL~vkDLl~~~~~~--~~-~l~~v~~~~~~~v~ 122 (396)
.++|. .++.++.++.++. ++...|.+++++++||.+. ++++|+++.+|++...... .. ++..+| .+++.
T Consensus 2 ~~~~~--~~~~~v~~~~~~~-~a~~~m~~~~~~~~~v~~~--~~l~Giit~~di~~~~~~~~~~~~~v~~v~---~~~~~ 73 (117)
T COG0517 2 KDIMT--KDVITVKPDTSVR-DALLLMSENGVSAVPVVDD--GKLVGIITERDILRALAAGGKRLLPVKEVM---TKPVV 73 (117)
T ss_pred ccccc--CCCEEECCCCcHH-HHHHHHHHcCCCEEEEeeC--CEEEEEEEHHHHHHHHhccCCccccHHHhc---cCCcE
Confidence 34555 4578999999999 9999999999999999975 3799999999998643221 11 356665 46889
Q ss_pred EEcCCCCHHHHHHHHHh-cCCceEEEEEEeCCCCCCCCCC-ceeeeecHHHHH
Q psy4847 123 FVFEDTTLDVLLKQFKE-GIKGHMAFVHRVNNEGEGDPFY-ETVGLITLEDVI 173 (396)
Q Consensus 123 ~V~~dt~L~~~L~~f~~-~~~~h~avV~~~~~~~~~De~g-~~vGIVTleDIi 173 (396)
++.+++++.++++.|.+ . +.+..+|+ |+.+ +++||||..||+
T Consensus 74 ~~~~~~~~~~~~~~m~~~~-~~~~lpVv--------~~~~~~lvGivt~~di~ 117 (117)
T COG0517 74 TVDPDTPLEEALELMVERH-KIRRLPVV--------DDDGGKLVGIITLSDIL 117 (117)
T ss_pred EECCCCCHHHHHHHHHHHc-CcCeEEEE--------ECCCCeEEEEEEHHHcC
Confidence 99999999999999998 4 34555555 5554 999999999974
No 91
>COG2905 Predicted signal-transduction protein containing cAMP-binding and CBS domains [Signal transduction mechanisms]
Probab=98.55 E-value=2.1e-07 Score=96.84 Aligned_cols=125 Identities=18% Similarity=0.189 Sum_probs=103.0
Q ss_pred HHhcccccccccccccCCCEEEEeCCCChhHHHHHHHHHcCCcEEEEEeCCCCcEEEEEEhhhhcc---cCC-ccccchh
Q psy4847 36 GALELRRKIVGDVMTKLEDVYMLSYDAILDFETVSEIMKSGYSRIPVYEDRRTNIVTMFYIKDLAL---VDP-DDNTPLK 111 (396)
Q Consensus 36 ~alel~~~tV~dIMtp~~dv~~l~~d~~l~~e~i~~i~~~g~sriPV~~~~~~~IVGiL~vkDLl~---~~~-~~~~~l~ 111 (396)
+.-++--.+|+++|+.. .+++++.+++. ++...|.+.|.+.+.|++++ +...|||+.+||.. .+. +...++.
T Consensus 142 ~~~e~~~trv~~~~~~~--~~~v~~~~~i~-~aa~km~~~gv~s~v~l~~~-~~~~GIvT~~dl~~~v~~~g~~~~~~V~ 217 (610)
T COG2905 142 GESEFILTRVGEVKTLP--AVTVSPQASIQ-DAARKMKDEGVSSLVVLDDS-GPLLGIVTRKDLRSRVIADGRSKTQKVS 217 (610)
T ss_pred ccchHHHHHHHHHhcCC--CcccCccCcHH-HHHHHHHhcCCCeEEEEcCC-CCccceeehHHHHHHHHhcCCCcccchh
Confidence 33445567799999865 78999999999 99999999999988888765 88999999999964 222 2235677
Q ss_pred hhhhhhcCCceEEcCCCCHHHHHHHHHhcCCceEEEEEEeCCCCCCCCCCceeeeecHHHHHHHHH
Q psy4847 112 TLCQFYQNSCYFVFEDTTLDVLLKQFKEGIKGHMAFVHRVNNEGEGDPFYETVGLITLEDVIEELI 177 (396)
Q Consensus 112 ~v~~~~~~~v~~V~~dt~L~~~L~~f~~~~~~h~avV~~~~~~~~~De~g~~vGIVTleDIiEeli 177 (396)
++| +.|+..|..++.+.+|+-.|-+. +.|-.+|. +.|+++||||+.||+...-
T Consensus 218 evm---T~p~~svd~~~~~feAml~m~r~-~I~hl~V~---------e~gq~~Gilt~~dIl~l~s 270 (610)
T COG2905 218 EVM---TSPVISVDRGDFLFEAMLMMLRN-RIKHLPVT---------EDGQPLGILTLTDILRLFS 270 (610)
T ss_pred hhh---ccCceeecCcchHHHHHHHHHHh-CCceeeee---------cCCeeeEEeeHHHHHHhhC
Confidence 776 58999999999999999999985 77777786 5699999999999998765
No 92
>PRK14869 putative manganese-dependent inorganic pyrophosphatase; Provisional
Probab=98.54 E-value=3.8e-07 Score=96.97 Aligned_cols=123 Identities=16% Similarity=0.156 Sum_probs=97.1
Q ss_pred ccccccccccCCCEEEEeCCCChhHHHHHHHHHcCCcEEEEEeCCCCcEEEEEEhhhhccc--CCc--------------
Q psy4847 42 RKIVGDVMTKLEDVYMLSYDAILDFETVSEIMKSGYSRIPVYEDRRTNIVTMFYIKDLALV--DPD-------------- 105 (396)
Q Consensus 42 ~~tV~dIMtp~~dv~~l~~d~~l~~e~i~~i~~~g~sriPV~~~~~~~IVGiL~vkDLl~~--~~~-------------- 105 (396)
..+|+|+|++ ++.++++++++. ++++.|.++++.++||++++ ++++|+|+.+|++.. ...
T Consensus 67 ~~~V~dim~~--~~~~v~~~~~l~-~a~~~m~~~~~~~lpVvd~~-g~l~Givt~~di~~~~~~~~~~~~~~~~~~t~~~ 142 (546)
T PRK14869 67 KPQVRDLEID--KPVTVSPDTSLK-EAWNLMDENNVKTLPVVDEE-GKLLGLVSLSDLARAYMDILDPEILSKSPTSLEN 142 (546)
T ss_pred CCcHHHhcCC--CCcEECCCCcHH-HHHHHHHHcCCCEEEEEcCC-CEEEEEEEHHHHHHHHHhhcchhhhhhcCCCHHH
Confidence 4689999985 488999999999 99999999999999999865 799999999998531 000
Q ss_pred ----------------------------------------------cc--------------------------------
Q psy4847 106 ----------------------------------------------DN-------------------------------- 107 (396)
Q Consensus 106 ----------------------------------------------~~-------------------------------- 107 (396)
+.
T Consensus 143 i~~~L~~~~l~~~~~~~~~~~~~~v~a~~~~~~~~~~~~~~lvi~gdr~d~~~~ai~~~~~~lIlt~g~~~~~~v~~la~ 222 (546)
T PRK14869 143 IIRTLDGEVLVGAEEDKVEEGKVVVAAMAPESLLERIEEGDIVIVGDREDIQLAAIEAGVRLLIITGGAPVSEDVLELAK 222 (546)
T ss_pred HHHhcCcEEEecCcccccccccEEEEEcCHHHHHHhccCCCEEEEcCcHHHHHHHHHcCCCEEEECCCCCCCHHHHHHHH
Confidence 00
Q ss_pred ---cc-----------------hhhhhhhhc-CCceEEcCCCCHHHHHHHHHhcCCceEEEEEEeCCCCCCCCCCceeee
Q psy4847 108 ---TP-----------------LKTLCQFYQ-NSCYFVFEDTTLDVLLKQFKEGIKGHMAFVHRVNNEGEGDPFYETVGL 166 (396)
Q Consensus 108 ---~~-----------------l~~v~~~~~-~~v~~V~~dt~L~~~L~~f~~~~~~h~avV~~~~~~~~~De~g~~vGI 166 (396)
.+ -..+.++|. +++.++++++++.++++.|.+. +.+.++|+ |+.|+++|+
T Consensus 223 ~~~i~ii~t~~dt~~t~~~l~~~~~V~~iM~~~~~~~~~~~~~~~~~~~~m~~~-~~~~~PVv--------d~~g~lvGi 293 (546)
T PRK14869 223 ENGVTVISTPYDTFTTARLINQSIPVSYIMTTEDLVTFSKDDYLEDVKEVMLKS-RYRSYPVV--------DEDGKVVGV 293 (546)
T ss_pred hCCCeEEEecccHHHHHHHhhcCCCHHHhccCCCcEEECCCCcHHHHHHHHHhc-CCCceEEE--------cCCCCEEEE
Confidence 00 001334566 6789999999999999999985 65666677 888999999
Q ss_pred ecHHHHHHHHH
Q psy4847 167 ITLEDVIEELI 177 (396)
Q Consensus 167 VTleDIiEeli 177 (396)
||..|++....
T Consensus 294 it~~dl~~~~~ 304 (546)
T PRK14869 294 ISRYHLLSPVR 304 (546)
T ss_pred EEHHHhhcccc
Confidence 99999998653
No 93
>cd04592 CBS_pair_EriC_assoc_euk This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the EriC CIC-type chloride channels in eukaryotes. These ion channels are proteins with a seemingly simple task of allowing the passive flow of chloride ions across biological membranes. CIC-type chloride channels come from all kingdoms of life, have several gene families, and can be gated by voltage. The members of the CIC-type chloride channel are double-barreled: two proteins forming homodimers at a broad interface formed by four helices from each protein. The two pores are not found at this interface, but are completely contained within each subunit, as deduced from the mutational analyses, unlike many other channels, in which four or five identical or structurally related subunits jointly form one pore. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually
Probab=98.49 E-value=7e-07 Score=77.50 Aligned_cols=93 Identities=13% Similarity=0.094 Sum_probs=71.1
Q ss_pred CEEEEeCCCChhHHHHHHHHHcCCcEEEEEeCCCCcEEEEEEhhhhcccCCccc----c-----------chhhhhh---
Q psy4847 54 DVYMLSYDAILDFETVSEIMKSGYSRIPVYEDRRTNIVTMFYIKDLALVDPDDN----T-----------PLKTLCQ--- 115 (396)
Q Consensus 54 dv~~l~~d~~l~~e~i~~i~~~g~sriPV~~~~~~~IVGiL~vkDLl~~~~~~~----~-----------~l~~v~~--- 115 (396)
++..++.++++. ++++.|.+.++..+||++++ ++++|+|+.+||+....... . .+.+++.
T Consensus 2 ~~~~v~~~~~l~-ea~~~m~~~~~~~~~VvD~~-g~l~Givt~~Dl~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~ 79 (133)
T cd04592 2 KYIKVSPTTTLK-EALNLMLDEKQSCVLVVDSD-DFLEGILTLGDIQRFLFTNKTTRVQPEDETKQTNTCLVSSVCTKGI 79 (133)
T ss_pred CceEECCCCCHH-HHHHHHHHcCCCEEEEECCC-CeEEEEEEHHHHHHHHhhccccccccchhhcccccccHHHHhhhhh
Confidence 467899999999 99999999999999999765 79999999999874321110 0 0223432
Q ss_pred ---hhcCCceEEcCCCCHHHHHHHHHhcCCceEEEEE
Q psy4847 116 ---FYQNSCYFVFEDTTLDVLLKQFKEGIKGHMAFVH 149 (396)
Q Consensus 116 ---~~~~~v~~V~~dt~L~~~L~~f~~~~~~h~avV~ 149 (396)
.|..++.++.+++++.++++.|.++ +.+.++|+
T Consensus 80 ~~~~~~~~~~~v~~~~~l~ea~~~m~~~-~~~~lPVv 115 (133)
T cd04592 80 SYGGQECGLWTCTPDTDLTTAKKLMEAK-GVKQLPVV 115 (133)
T ss_pred hhcccCCCCEEECCCCCHHHHHHHHHHc-CCCcCCEe
Confidence 1235788999999999999999995 67766676
No 94
>PF00571 CBS: CBS domain CBS domain web page. Mutations in the CBS domain of Swiss:P35520 lead to homocystinuria.; InterPro: IPR000644 CBS (cystathionine-beta-synthase) domains are small intracellular modules, mostly found in two or four copies within a protein, that occur in a variety of proteins in bacteria, archaea, and eukaryotes [, ]. Tandem pairs of CBS domains can act as binding domains for adenosine derivatives and may regulate the activity of attached enzymatic or other domains []. In some cases, CBS domains may act as sensors of cellular energy status by being activated by AMP and inhibited by ATP []. In chloride ion channels, the CBS domains have been implicated in intracellular targeting and trafficking, as well as in protein-protein interactions, but results vary with different channels: in the CLC-5 channel, the CBS domain was shown to be required for trafficking [], while in the CLC-1 channel, the CBS domain was shown to be critical for channel function, but not necessary for trafficking []. Recent experiments revealing that CBS domains can bind adenosine-containing ligands such ATP, AMP, or S-adenosylmethionine have led to the hypothesis that CBS domains function as sensors of intracellular metabolites [, ]. Crystallographic studies of CBS domains have shown that pairs of CBS sequences form a globular domain where each CBS unit adopts a beta-alpha-beta-beta-alpha pattern []. Crystal structure of the CBS domains of the AMP-activated protein kinase in complexes with AMP and ATP shows that the phosphate groups of AMP/ATP lie in a surface pocket at the interface of two CBS domains, which is lined with basic residues, many of which are associated with disease-causing mutations []. In humans, mutations in conserved residues within CBS domains cause a variety of human hereditary diseases, including (with the gene mutated in parentheses): homocystinuria (cystathionine beta-synthase); Wolff-Parkinson-White syndrome (gamma 2 subunit of AMP-activated protein kinase); retinitis pigmentosa (IMP dehydrogenase-1); congenital myotonia, idiopathic generalized epilepsy, hypercalciuric nephrolithiasis, and classic Bartter syndrome (CLC chloride channel family members).; GO: 0005515 protein binding; PDB: 3JTF_A 3TE5_C 3TDH_C 3T4N_C 2QLV_C 3OI8_A 3LV9_A 2QH1_B 1PVM_B 3LQN_A ....
Probab=98.42 E-value=4e-07 Score=66.63 Aligned_cols=53 Identities=34% Similarity=0.497 Sum_probs=48.8
Q ss_pred cccccccCCCEEEEeCCCChhHHHHHHHHHcCCcEEEEEeCCCCcEEEEEEhhhhcc
Q psy4847 45 VGDVMTKLEDVYMLSYDAILDFETVSEIMKSGYSRIPVYEDRRTNIVTMFYIKDLAL 101 (396)
Q Consensus 45 V~dIMtp~~dv~~l~~d~~l~~e~i~~i~~~g~sriPV~~~~~~~IVGiL~vkDLl~ 101 (396)
|+++|++ ++..++.++++. ++++.|.+++++++||++++ ++++|+|+.+||+.
T Consensus 1 v~~~m~~--~~~~v~~~~~l~-~~~~~~~~~~~~~~~V~d~~-~~~~G~is~~dl~~ 53 (57)
T PF00571_consen 1 VGDIMTP--PPITVSPDDSLE-EALEIMRKNGISRLPVVDED-GKLVGIISRSDLLK 53 (57)
T ss_dssp HHHHSBS--SSEEEETTSBHH-HHHHHHHHHTSSEEEEESTT-SBEEEEEEHHHHHH
T ss_pred CeECCcC--CCEEEcCcCcHH-HHHHHHHHcCCcEEEEEecC-CEEEEEEEHHHHHh
Confidence 6799997 489999999999 99999999999999999776 89999999999974
No 95
>PF00571 CBS: CBS domain CBS domain web page. Mutations in the CBS domain of Swiss:P35520 lead to homocystinuria.; InterPro: IPR000644 CBS (cystathionine-beta-synthase) domains are small intracellular modules, mostly found in two or four copies within a protein, that occur in a variety of proteins in bacteria, archaea, and eukaryotes [, ]. Tandem pairs of CBS domains can act as binding domains for adenosine derivatives and may regulate the activity of attached enzymatic or other domains []. In some cases, CBS domains may act as sensors of cellular energy status by being activated by AMP and inhibited by ATP []. In chloride ion channels, the CBS domains have been implicated in intracellular targeting and trafficking, as well as in protein-protein interactions, but results vary with different channels: in the CLC-5 channel, the CBS domain was shown to be required for trafficking [], while in the CLC-1 channel, the CBS domain was shown to be critical for channel function, but not necessary for trafficking []. Recent experiments revealing that CBS domains can bind adenosine-containing ligands such ATP, AMP, or S-adenosylmethionine have led to the hypothesis that CBS domains function as sensors of intracellular metabolites [, ]. Crystallographic studies of CBS domains have shown that pairs of CBS sequences form a globular domain where each CBS unit adopts a beta-alpha-beta-beta-alpha pattern []. Crystal structure of the CBS domains of the AMP-activated protein kinase in complexes with AMP and ATP shows that the phosphate groups of AMP/ATP lie in a surface pocket at the interface of two CBS domains, which is lined with basic residues, many of which are associated with disease-causing mutations []. In humans, mutations in conserved residues within CBS domains cause a variety of human hereditary diseases, including (with the gene mutated in parentheses): homocystinuria (cystathionine beta-synthase); Wolff-Parkinson-White syndrome (gamma 2 subunit of AMP-activated protein kinase); retinitis pigmentosa (IMP dehydrogenase-1); congenital myotonia, idiopathic generalized epilepsy, hypercalciuric nephrolithiasis, and classic Bartter syndrome (CLC chloride channel family members).; GO: 0005515 protein binding; PDB: 3JTF_A 3TE5_C 3TDH_C 3T4N_C 2QLV_C 3OI8_A 3LV9_A 2QH1_B 1PVM_B 3LQN_A ....
Probab=98.41 E-value=1.1e-06 Score=64.28 Aligned_cols=53 Identities=21% Similarity=0.200 Sum_probs=47.8
Q ss_pred hhcCCceEEcCCCCHHHHHHHHHhcCCceEEEEEEeCCCCCCCCCCceeeeecHHHHHHHHH
Q psy4847 116 FYQNSCYFVFEDTTLDVLLKQFKEGIKGHMAFVHRVNNEGEGDPFYETVGLITLEDVIEELI 177 (396)
Q Consensus 116 ~~~~~v~~V~~dt~L~~~L~~f~~~~~~h~avV~~~~~~~~~De~g~~vGIVTleDIiEeli 177 (396)
+|.++++++++++++.++++.|++. +.+.++|+ |+.|+++|+||..||++.+.
T Consensus 4 ~m~~~~~~v~~~~~l~~~~~~~~~~-~~~~~~V~--------d~~~~~~G~is~~dl~~~l~ 56 (57)
T PF00571_consen 4 IMTPPPITVSPDDSLEEALEIMRKN-GISRLPVV--------DEDGKLVGIISRSDLLKALL 56 (57)
T ss_dssp HSBSSSEEEETTSBHHHHHHHHHHH-TSSEEEEE--------STTSBEEEEEEHHHHHHHHH
T ss_pred CCcCCCEEEcCcCcHHHHHHHHHHc-CCcEEEEE--------ecCCEEEEEEEHHHHHhhhh
Confidence 3457999999999999999999996 77888888 88999999999999999885
No 96
>KOG1764|consensus
Probab=98.32 E-value=3.5e-06 Score=85.90 Aligned_cols=126 Identities=18% Similarity=0.189 Sum_probs=97.3
Q ss_pred ccccccccccCC-CEEEEeCCCChhHHHHHHHHHcCCcEEEEEeCCCCcEEEEEEhhhhcccCCcc---c--cc-hhhhh
Q psy4847 42 RKIVGDVMTKLE-DVYMLSYDAILDFETVSEIMKSGYSRIPVYEDRRTNIVTMFYIKDLALVDPDD---N--TP-LKTLC 114 (396)
Q Consensus 42 ~~tV~dIMtp~~-dv~~l~~d~~l~~e~i~~i~~~g~sriPV~~~~~~~IVGiL~vkDLl~~~~~~---~--~~-l~~v~ 114 (396)
.+++.|.=..-. ++..+..++++- ++++.|...+++.+||++.. ++.+|.+...|+....... . .. +....
T Consensus 225 ~~s~~dl~ig~~~~i~~i~~~~~v~-~al~~m~~~~is~lpvV~~~-g~~v~~~s~~Dv~~l~~~~~~~~~~~~~l~~~~ 302 (381)
T KOG1764|consen 225 SKSLSDLGIGTWSNIASISEDTPVI-EALKIMSERRISALPVVDEN-GKKVGNYSRFDVIHLAREGTYNNLDLSCLSEAL 302 (381)
T ss_pred hCCHHHhCcchhhhheeecCCCcHH-HHHHHHHhcCcCcceEEcCC-CceecceehhhhhhhhhcCccCccchhHHHHHh
Confidence 344554433333 388899999999 99999999999999999876 6779999999997532211 1 11 22221
Q ss_pred hh---hcCCceEEcCCCCHHHHHHHHHhcCCceEEEEEEeCCCCCCCCCCceeeeecHHHHHHHHHh
Q psy4847 115 QF---YQNSCYFVFEDTTLDVLLKQFKEGIKGHMAFVHRVNNEGEGDPFYETVGLITLEDVIEELIQ 178 (396)
Q Consensus 115 ~~---~~~~v~~V~~dt~L~~~L~~f~~~~~~h~avV~~~~~~~~~De~g~~vGIVTleDIiEeli~ 178 (396)
.. -..+++++.++.+|..++..|..+ +.|-+.|+ |+.|.++|+||+.||+..+..
T Consensus 303 ~~~~~~~~~vvtc~~~ssL~~vi~~lv~~-~vHRl~VV--------d~~~~l~GvvSLsDil~~l~~ 360 (381)
T KOG1764|consen 303 SHRPIRFEGVVTCRPTSTLAEVIDKLVAH-RVHRLWVV--------DEDGVLVGVISLSDILSYLVL 360 (381)
T ss_pred hhcccccCccEEEeecchHHHHHHHHHhc-CceEEEEE--------cCCCcEEEEeeHHHHHHHHHh
Confidence 11 123578999999999999999995 89999999 889999999999999999984
No 97
>PF00027 cNMP_binding: Cyclic nucleotide-binding domain; InterPro: IPR000595 Proteins that bind cyclic nucleotides (cAMP or cGMP) share a structural domain of about 120 residues [, , ]. The best studied of these proteins is the prokaryotic catabolite gene activator (also known as the cAMP receptor protein) (gene crp) where such a domain is known to be composed of three alpha-helices and a distinctive eight-stranded, antiparallel beta-barrel structure. There are six invariant amino acids in this domain, three of which are glycine residues that are thought to be essential for maintenance of the structural integrity of the beta-barrel. cAMP- and cGMP-dependent protein kinases (cAPK and cGPK) contain two tandem copies of the cyclic nucleotide-binding domain. The cAPK's are composed of two different subunits, a catalytic chain and a regulatory chain, which contains both copies of the domain. The cGPK's are single chain enzymes that include the two copies of the domain in their N-terminal section. Vertebrate cyclic nucleotide-gated ion-channels also contain this domain. Two such cations channels have been fully characterised, one is found in rod cells where it plays a role in visual signal transduction.; PDB: 1O7F_A 2BYV_E 3E97_A 3U10_A 2H6B_A 3SHR_A 2OZ6_A 1WGP_A 3LA2_A 3LA3_B ....
Probab=98.22 E-value=6.9e-06 Score=64.52 Aligned_cols=80 Identities=25% Similarity=0.375 Sum_probs=66.9
Q ss_pred CccccccccCcccceEEEEEeeEEEEEE----cCCcceeecCCccchhhhhcccccccCCCCCCCCCcccccCCCccccc
Q psy4847 257 PTFKSLKKRNKPVDYFVLILEGRAEVVV----GKENLVYEAGPFSYFGCQALTQNIGIAESPTNNSSAAQAYGGSLQSVN 332 (396)
Q Consensus 257 ~~~~~LY~~g~~~d~f~LIL~Grv~V~~----G~e~~~~E~gpfs~~G~~aL~~~~~~~~~~~~~~~~~~~~~~s~~~~~ 332 (396)
.+...||+.|++.+.+++|++|.+.+.. |+....+-.+|..+||..++....
T Consensus 5 ~~g~~i~~~g~~~~~~~~i~~G~v~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~------------------------ 60 (91)
T PF00027_consen 5 KKGEVIYRQGDPCDHIYIILSGEVKVSSINEDGKEQIIFFLGPGDIFGEIELLTGK------------------------ 60 (91)
T ss_dssp STTEEEEETTSBESEEEEEEESEEEEEEETTTSEEEEEEEEETTEEESGHHHHHTS------------------------
T ss_pred CCCCEEEeCCCcCCEEEEEEECceEEEeceecceeeeecceeeeccccceeecCCC------------------------
Confidence 4567899999999999999999999998 444456788999999999888621
Q ss_pred ccccCCcccccCcEEEEcCCeEEEEEeHHHHHHHHHH
Q psy4847 333 LDSILRYTFVPDYSVRATTEMFYVKIRRSFYLAAKRA 369 (396)
Q Consensus 333 ~~~~~~~~~~PD~sv~~~~d~~~~~Itr~~Y~~al~a 369 (396)
-..++++|.++|+.+.|++..|+..+..
T Consensus 61 ---------~~~~~~~a~~~~~~~~i~~~~~~~~~~~ 88 (91)
T PF00027_consen 61 ---------PSPFTVIALTDSEVLRIPREDFLQLLQQ 88 (91)
T ss_dssp ---------BBSSEEEESSSEEEEEEEHHHHHHHHHH
T ss_pred ---------ccEEEEEEccCEEEEEEeHHHHHHHHHh
Confidence 1235999999999999999999988753
No 98
>PRK11753 DNA-binding transcriptional dual regulator Crp; Provisional
Probab=98.17 E-value=9.2e-06 Score=74.89 Aligned_cols=97 Identities=16% Similarity=0.175 Sum_probs=80.6
Q ss_pred cHHHHHHHHhcCCCCCCCccccccccCcccceEEEEEeeEEEEEE----cCCcceeecCCccchhhhhcccccccCCCCC
Q psy4847 240 VGSLLDRITQKGTSQQKPTFKSLKKRNKPVDYFVLILEGRAEVVV----GKENLVYEAGPFSYFGCQALTQNIGIAESPT 315 (396)
Q Consensus 240 ~e~vL~~Ll~~~~v~~~~~~~~LY~~g~~~d~f~LIL~Grv~V~~----G~e~~~~E~gpfs~~G~~aL~~~~~~~~~~~ 315 (396)
++..+..|..+.......+...||..|++++++++|++|.+++.. |++-.....+|..+||..++.... .+
T Consensus 9 ~~~~~~~l~~~~~~~~~~kg~~l~~~g~~~~~~y~V~~G~v~~~~~~~~g~~~~~~~~~~g~~~g~~~~~~~~----~~- 83 (211)
T PRK11753 9 TDPTLEWFLSHCHIHKYPAKSTLIHAGEKAETLYYIVKGSVAVLIKDEEGKEMILSYLNQGDFIGELGLFEEG----QE- 83 (211)
T ss_pred CHHHHHHHHhhCeEEEeCCCCEEEeCCCCCCeEEEEEeCEEEEEEECCCCCEEEEEEcCCCCEEeehhhccCC----CC-
Confidence 567788888888888888888999999999999999999999885 777788899999999998776410 00
Q ss_pred CCCCcccccCCCcccccccccCCcccccCcEEEEcCCeEEEEEeHHHHHHHHH
Q psy4847 316 NNSSAAQAYGGSLQSVNLDSILRYTFVPDYSVRATTEMFYVKIRRSFYLAAKR 368 (396)
Q Consensus 316 ~~~~~~~~~~~s~~~~~~~~~~~~~~~PD~sv~~~~d~~~~~Itr~~Y~~al~ 368 (396)
.-++++|.+||..+.|++..+...++
T Consensus 84 ---------------------------~~~~~~a~~~~~v~~i~~~~~~~l~~ 109 (211)
T PRK11753 84 ---------------------------RSAWVRAKTACEVAEISYKKFRQLIQ 109 (211)
T ss_pred ---------------------------ceEEEEEcCcEEEEEEcHHHHHHHHH
Confidence 12489999999999999999888654
No 99
>cd00038 CAP_ED effector domain of the CAP family of transcription factors; members include CAP (or cAMP receptor protein (CRP)), which binds cAMP, FNR (fumarate and nitrate reduction), which uses an iron-sulfur cluster to sense oxygen) and CooA, a heme containing CO sensor. In all cases binding of the effector leads to conformational changes and the ability to activate transcription. Cyclic nucleotide-binding domain similar to CAP are also present in cAMP- and cGMP-dependent protein kinases (cAPK and cGPK) and vertebrate cyclic nucleotide-gated ion-channels. Cyclic nucleotide-monophosphate binding domain; proteins that bind cyclic nucleotides (cAMP or cGMP) share a structural domain of about 120 residues; the best studied is the prokaryotic catabolite gene activator, CAP, where such a domain is known to be composed of three alpha-helices and a distinctive eight-stranded, antiparallel beta-barrel structure; three conserved glycine residues are thought to be essential for maintenance of
Probab=98.13 E-value=2.3e-05 Score=63.22 Aligned_cols=96 Identities=25% Similarity=0.310 Sum_probs=77.9
Q ss_pred HHHHHHHHhcCCCCCCCccccccccCcccceEEEEEeeEEEEEE----cCCcceeecCCccchhhhhcccccccCCCCCC
Q psy4847 241 GSLLDRITQKGTSQQKPTFKSLKKRNKPVDYFVLILEGRAEVVV----GKENLVYEAGPFSYFGCQALTQNIGIAESPTN 316 (396)
Q Consensus 241 e~vL~~Ll~~~~v~~~~~~~~LY~~g~~~d~f~LIL~Grv~V~~----G~e~~~~E~gpfs~~G~~aL~~~~~~~~~~~~ 316 (396)
+..+..|+.+..+....+...||..|++.+++.+|++|.+.+.. |++.+.-..++.++||...+....
T Consensus 7 ~~~~~~l~~~~~~~~~~~g~~l~~~~~~~~~~~~i~~G~v~~~~~~~~g~~~~~~~~~~g~~~g~~~~~~~~-------- 78 (115)
T cd00038 7 DEELEELADALEERRFPAGEVIIRQGDPADSLYIVLSGSVEVYKLDEDGREQIVGFLGPGDLFGELALLGNG-------- 78 (115)
T ss_pred HHHHHHHHhhceeeeeCCCCEEEcCCCCCCeEEEEEeCEEEEEEECCCCcEEEEEecCCccCcChHHHhcCC--------
Confidence 45677788777777778888999999999999999999999987 456778888899999998775310
Q ss_pred CCCcccccCCCcccccccccCCcccccCcEEEEcCCeEEEEEeHHHHHHHHHH
Q psy4847 317 NSSAAQAYGGSLQSVNLDSILRYTFVPDYSVRATTEMFYVKIRRSFYLAAKRA 369 (396)
Q Consensus 317 ~~~~~~~~~~s~~~~~~~~~~~~~~~PD~sv~~~~d~~~~~Itr~~Y~~al~a 369 (396)
-..|+++|.++|++++|++..+...+..
T Consensus 79 -------------------------~~~~~~~a~~~~~~~~i~~~~~~~~~~~ 106 (115)
T cd00038 79 -------------------------PRSATVRALTDSELLVLPRSDFRRLLQE 106 (115)
T ss_pred -------------------------CCCceEEEcCceEEEEEeHHHHHHHHHH
Confidence 0134899999999999999999887653
No 100
>PRK10070 glycine betaine transporter ATP-binding subunit; Provisional
Probab=98.11 E-value=2.6e-05 Score=80.14 Aligned_cols=120 Identities=15% Similarity=0.051 Sum_probs=91.3
Q ss_pred cccccccccCCC-EEEEeCCCChhHHHHHHHHHcCCcEEEEEeCCCCcEEEEEEhhhhcccCCccccchhhhhhhhcCCc
Q psy4847 43 KIVGDVMTKLED-VYMLSYDAILDFETVSEIMKSGYSRIPVYEDRRTNIVTMFYIKDLALVDPDDNTPLKTLCQFYQNSC 121 (396)
Q Consensus 43 ~tV~dIMtp~~d-v~~l~~d~~l~~e~i~~i~~~g~sriPV~~~~~~~IVGiL~vkDLl~~~~~~~~~l~~v~~~~~~~v 121 (396)
.++.++|.+... ......+.... +++..|...+.+.+.|++++ ++++|+|+.+++....... ..+.+++ ....
T Consensus 274 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~-~~~~g~~~~~~~~~~~~~~-~~~~~~~---~~~~ 347 (400)
T PRK10070 274 FSAKDIARRTPNGLIRKTPGFGPR-SALKLLQDEDREYGYVIERG-NKFVGAVSIDSLKTALTQQ-QGLDAAL---IDAP 347 (400)
T ss_pred cchhhhhhcCcccccccCCCCCHH-HHHHHHHhcCCceEEEEcCC-CcEEEEEeHHHHHhhhhcC-Cchhhhh---ccCC
Confidence 467788854321 12233555666 89999999999999999876 7999999999997543222 2455554 3667
Q ss_pred eEEcCCCCHHHHHHHHHhcCCceEEEEEEeCCCCCCCCCCceeeeecHHHHHHHHHh
Q psy4847 122 YFVFEDTTLDVLLKQFKEGIKGHMAFVHRVNNEGEGDPFYETVGLITLEDVIEELIQ 178 (396)
Q Consensus 122 ~~V~~dt~L~~~L~~f~~~~~~h~avV~~~~~~~~~De~g~~vGIVTleDIiEeli~ 178 (396)
.+|.++++|.+++..|... ... ++|+ |+.|+++|+||..+++..|.+
T Consensus 348 ~~~~~~~~~~~~~~~~~~~-~~~-~~v~--------~~~~~~~g~~~~~~~~~~~~~ 394 (400)
T PRK10070 348 LAVDAQTPLSELLSHVGQA-PCA-VPVV--------DEDQQYVGIISKGMLLRALDR 394 (400)
T ss_pred ceeCCCCCHHHHHHHHHhC-CCc-EEEE--------CCCCcEEEEEEHHHHHHHHHh
Confidence 8999999999999999984 556 5555 888999999999999999974
No 101
>smart00100 cNMP Cyclic nucleotide-monophosphate binding domain. Catabolite gene activator protein (CAP) is a prokaryotic homologue of eukaryotic cNMP-binding domains, present in ion channels, and cNMP-dependent kinases.
Probab=98.07 E-value=2.1e-05 Score=63.68 Aligned_cols=100 Identities=20% Similarity=0.227 Sum_probs=79.9
Q ss_pred cHHHHHHHHhcCCCCCCCccccccccCcccceEEEEEeeEEEEEE----cCCcceeecCCccchhhhhcccccccCCCCC
Q psy4847 240 VGSLLDRITQKGTSQQKPTFKSLKKRNKPVDYFVLILEGRAEVVV----GKENLVYEAGPFSYFGCQALTQNIGIAESPT 315 (396)
Q Consensus 240 ~e~vL~~Ll~~~~v~~~~~~~~LY~~g~~~d~f~LIL~Grv~V~~----G~e~~~~E~gpfs~~G~~aL~~~~~~~~~~~ 315 (396)
++..+..|..+.......+...||+.|++.+++.+|++|.+.+.. |++......+|.++||...+...
T Consensus 6 ~~~~~~~l~~~~~~~~~~~g~~l~~~g~~~~~~y~v~~G~v~~~~~~~~g~~~~~~~~~~g~~~g~~~~~~~-------- 77 (120)
T smart00100 6 DAEELRELADALEPVRYPAGEVIIRQGDVGDSFYIILSGEVRVYKVLEDGREQILGILGPGDFFGELALLTN-------- 77 (120)
T ss_pred CHHHHHHHHHhceEEEeCCCCEEEeCCCcCCcEEEEEeeEEEEEEECCCCceEEEEeecCCceechhhhccC--------
Confidence 345567777777666677788899999999999999999999986 77889999999999999887720
Q ss_pred CCCCcccccCCCcccccccccCCcccccCcEEEEcCCeEEEEEeHHHHHHHHHHh
Q psy4847 316 NNSSAAQAYGGSLQSVNLDSILRYTFVPDYSVRATTEMFYVKIRRSFYLAAKRAT 370 (396)
Q Consensus 316 ~~~~~~~~~~~s~~~~~~~~~~~~~~~PD~sv~~~~d~~~~~Itr~~Y~~al~as 370 (396)
......+++.+.++|.+..|.+..+.......
T Consensus 78 -----------------------~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~ 109 (120)
T smart00100 78 -----------------------SRRAASATAVALELATLLRIDFRDFLQLLQEN 109 (120)
T ss_pred -----------------------CCcccceEEEEEeeEEEEccCHHHHHHHHHHh
Confidence 00112348889999999999999988876543
No 102
>COG0664 Crp cAMP-binding proteins - catabolite gene activator and regulatory subunit of cAMP-dependent protein kinases [Signal transduction mechanisms]
Probab=98.00 E-value=3.4e-05 Score=69.99 Aligned_cols=93 Identities=24% Similarity=0.269 Sum_probs=75.6
Q ss_pred HHHHHhcCCCCCCCccccccccCcccceEEEEEeeEEEEEE----cCCcceeecCCccchhhhhcccccccCCCCCCCCC
Q psy4847 244 LDRITQKGTSQQKPTFKSLKKRNKPVDYFVLILEGRAEVVV----GKENLVYEAGPFSYFGCQALTQNIGIAESPTNNSS 319 (396)
Q Consensus 244 L~~Ll~~~~v~~~~~~~~LY~~g~~~d~f~LIL~Grv~V~~----G~e~~~~E~gpfs~~G~~aL~~~~~~~~~~~~~~~ 319 (396)
+..+.........+++..||+.|++.+++++|++|.+.+.. |++......||..+||+.++.... +.
T Consensus 16 ~~~~~~~~~~~~~~~g~~l~~~g~~~~~~y~v~~G~v~~~~~~~~G~~~~~~~~~~g~~fg~~~l~~~~--~~------- 86 (214)
T COG0664 16 LELLALKLEVRKLPKGEVLFTEGEEADSLYIILSGIVKLYANTEDGREIILGFLGPGDFFGELALLGGD--PR------- 86 (214)
T ss_pred HHHHhhhceeEeeCCCCEEEcCCCcCceEEEEEEeEEEEEEECCCCcEEEEEEecCCchhhhHHHhcCC--Cc-------
Confidence 44444445566677788999999999999999999999998 566788889999999999998621 00
Q ss_pred cccccCCCcccccccccCCcccccCcEEEEcCCeEEEEEeHHHHHHHHHH
Q psy4847 320 AAQAYGGSLQSVNLDSILRYTFVPDYSVRATTEMFYVKIRRSFYLAAKRA 369 (396)
Q Consensus 320 ~~~~~~~s~~~~~~~~~~~~~~~PD~sv~~~~d~~~~~Itr~~Y~~al~a 369 (396)
.++++|++||..+.|++..+.+.+..
T Consensus 87 ------------------------~~~~~a~~~~~~~~~~~~~~~~~~~~ 112 (214)
T COG0664 87 ------------------------SASAVALTDVEVLEIPRKDFLELLAE 112 (214)
T ss_pred ------------------------cceEEEcceEEEEEecHHHHHHHHhh
Confidence 23899999999999999999886554
No 103
>PRK09392 ftrB transcriptional activator FtrB; Provisional
Probab=97.97 E-value=4.7e-05 Score=71.73 Aligned_cols=96 Identities=20% Similarity=0.233 Sum_probs=79.7
Q ss_pred cHHHHHHHHhcCCCCCCCccccccccCcccceEEEEEeeEEEEEE---cCCcceeecCCccchhhhhcccccccCCCCCC
Q psy4847 240 VGSLLDRITQKGTSQQKPTFKSLKKRNKPVDYFVLILEGRAEVVV---GKENLVYEAGPFSYFGCQALTQNIGIAESPTN 316 (396)
Q Consensus 240 ~e~vL~~Ll~~~~v~~~~~~~~LY~~g~~~d~f~LIL~Grv~V~~---G~e~~~~E~gpfs~~G~~aL~~~~~~~~~~~~ 316 (396)
++..+..|+.........++..||+.|++++++.+|++|+|.+.. |++....-.+|+.+||..++....
T Consensus 19 ~~~~~~~l~~~~~~~~~~~ge~l~~~g~~~~~~~~v~~G~v~~~~~~~~~~~~i~~~~~g~~~g~~~~~~~~-------- 90 (236)
T PRK09392 19 ADATFERLMRGAFLQRFPPGTMLITEGEPADFLFVVLDGLVELSASSQDRETTLAILRPVSTFILAAVVLDA-------- 90 (236)
T ss_pred CHHHHHHHHhhcceeecCCCCEEEeCCCccceEEEEEeCEEEEEEcCCCceEEEEEeCCCchhhhHHHhCCC--------
Confidence 556788888887777788889999999999999999999999976 778888889999999988776410
Q ss_pred CCCcccccCCCcccccccccCCcccccCcEEEEcCCeEEEEEeHHHHHHHHH
Q psy4847 317 NSSAAQAYGGSLQSVNLDSILRYTFVPDYSVRATTEMFYVKIRRSFYLAAKR 368 (396)
Q Consensus 317 ~~~~~~~~~~s~~~~~~~~~~~~~~~PD~sv~~~~d~~~~~Itr~~Y~~al~ 368 (396)
| -.+++.|.++|.++.|++..+...+.
T Consensus 91 ---~----------------------~~~~~~A~~~~~~~~i~~~~~~~l~~ 117 (236)
T PRK09392 91 ---P----------------------YLMSARTLTRSRVLMIPAELVREAMS 117 (236)
T ss_pred ---C----------------------CceEEEEcCceEEEEEeHHHHHHHHH
Confidence 0 13489999999999999998876543
No 104
>KOG2550|consensus
Probab=97.91 E-value=3.3e-05 Score=77.98 Aligned_cols=128 Identities=20% Similarity=0.284 Sum_probs=100.7
Q ss_pred CHHHHHHHHHHhcccccccccccccCCCEEEEeCCCChhHHHHHHHHHcCCcEEEEEeCC--CCcEEEEEEhhhhcccCC
Q psy4847 27 EKDEVNIISGALELRRKIVGDVMTKLEDVYMLSYDAILDFETVSEIMKSGYSRIPVYEDR--RTNIVTMFYIKDLALVDP 104 (396)
Q Consensus 27 ~~~E~~~i~~alel~~~tV~dIMtp~~dv~~l~~d~~l~~e~i~~i~~~g~sriPV~~~~--~~~IVGiL~vkDLl~~~~ 104 (396)
.+++.+++..+-.|.. .-++-| +.+.++.++. ++++.-..+||+.+||.++. ..++||+|+-+|+-+. .
T Consensus 97 pe~QA~~v~~vK~~~~---g~~~~p----~v~sp~~tvg-~v~~~k~~~gF~g~pvTe~g~~~~KLvG~vtsrdi~f~-~ 167 (503)
T KOG2550|consen 97 PEDQADMVRRVKNYEN---GFINNP----IVISPTTTVG-EVKEAKEKHGFSGIPVTEDGKRGSKLVGIITSRDIQFL-E 167 (503)
T ss_pred HHHHHHHHHHHHHhhc---ccccCC----cccCCcccch-hhhhhcccccccccccccCCcccceeEEEEehhhhhhh-h
Confidence 4566778888866653 333333 4678888888 88888889999999999742 3689999999999877 4
Q ss_pred ccccchhhhhhhhcCCceEEcCCCCHHHHHHHHHhcCCceEEEEEEeCCCCCCCCCCceeeeecHHHHHHH
Q psy4847 105 DDNTPLKTLCQFYQNSCYFVFEDTTLDVLLKQFKEGIKGHMAFVHRVNNEGEGDPFYETVGLITLEDVIEE 175 (396)
Q Consensus 105 ~~~~~l~~v~~~~~~~v~~V~~dt~L~~~L~~f~~~~~~h~avV~~~~~~~~~De~g~~vGIVTleDIiEe 175 (396)
+..+.+.++|. ...++.+.+.+|.++=+.+++.++..+++| |+.|+++-||++.|+...
T Consensus 168 ~~~~~~~~vmt---~~~~~~~~gi~l~~~neiL~~~kkGkl~iv---------~~~gelva~~~rtDl~k~ 226 (503)
T KOG2550|consen 168 DNSLLVSDVMT---KNPVTGAQGITLKEANEILKKIKKGKLPVV---------DDKGELVAMLSRTDLMKN 226 (503)
T ss_pred cccchhhhhcc---cccccccccccHHHHHHHHHhhhcCCccee---------ccCCceeeeeehhhhhhh
Confidence 45577888875 445899999999999999988655667666 778999999999998764
No 105
>TIGR01186 proV glycine betaine/L-proline transport ATP binding subunit. This model describes the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Functionally, this transport system is involved in osmoregulation. Under conditions of stress, the organism recruits these transport system to accumulate glycine betaine and other solutes which offer osmo-protection. It has been demonstrated that glycine betaine uptake is accompanied by symport with sodium ions. The locus has been named variously as proU or opuA. A gene library from L.lact
Probab=97.83 E-value=0.00018 Score=73.06 Aligned_cols=105 Identities=13% Similarity=0.136 Sum_probs=82.8
Q ss_pred EEeCCCChhHHHHHHHHHcCCcEEEEEeCCCCcEEEEEEhhhhcccCCccccchhhhhhhhcCCceEEcCCCCHHHHHHH
Q psy4847 57 MLSYDAILDFETVSEIMKSGYSRIPVYEDRRTNIVTMFYIKDLALVDPDDNTPLKTLCQFYQNSCYFVFEDTTLDVLLKQ 136 (396)
Q Consensus 57 ~l~~d~~l~~e~i~~i~~~g~sriPV~~~~~~~IVGiL~vkDLl~~~~~~~~~l~~v~~~~~~~v~~V~~dt~L~~~L~~ 136 (396)
....+.+.. +++..+...+.....|++++ ++++|++..+++....... ..+.+.+ ...+.+|.++++|.+++..
T Consensus 254 ~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~-~~~~g~~~~~~~~~~~~~~-~~~~~~~---~~~~~~~~~~~~~~~~~~~ 327 (363)
T TIGR01186 254 TKTADKGPR-SALQLMRDERVDSLYVVDRQ-NKLVGVVDVESIKQARKKA-QGLQDVL---IDDIYTVDAGTLLRETVRK 327 (363)
T ss_pred eecCCCCHH-HHHHHHHhcCCceEEEEcCC-CCEEEEEeHHHHHHHhhcC-Cchhhhh---ccCCceECCCCcHHHHHHH
Confidence 445566677 88888988899899999765 7899999999987543221 2344444 3667899999999999999
Q ss_pred HHhcCCceEEEEEEeCCCCCCCCCCceeeeecHHHHHHHHH
Q psy4847 137 FKEGIKGHMAFVHRVNNEGEGDPFYETVGLITLEDVIEELI 177 (396)
Q Consensus 137 f~~~~~~h~avV~~~~~~~~~De~g~~vGIVTleDIiEeli 177 (396)
|.+. ... ++|+ |+.|+++|+||..+|++.+.
T Consensus 328 ~~~~-~~~-~~v~--------~~~~~~~g~i~~~~~~~~~~ 358 (363)
T TIGR01186 328 VLKA-GIK-VPVV--------DEDQRLVGIVTRGSLVDALY 358 (363)
T ss_pred HHhC-CCC-EEEE--------CCCCcEEEEEEHHHHHHHHH
Confidence 9985 566 5566 88899999999999999986
No 106
>TIGR03697 NtcA_cyano global nitrogen regulator NtcA, cyanobacterial. Members of this protein family, found in the cyanobacteria, are the global nitrogen regulator NtcA. This DNA-binding transcriptional regulator is required for expressing many different ammonia-repressible genes. The consensus NtcA-binding site is G T A N(8)T A C.
Probab=97.74 E-value=0.00012 Score=66.44 Aligned_cols=78 Identities=18% Similarity=0.102 Sum_probs=63.4
Q ss_pred ccccccCcccceEEEEEeeEEEEEE----cCCcceeecCCccchhhhhcccccccCCCCCCCCCcccccCCCcccccccc
Q psy4847 260 KSLKKRNKPVDYFVLILEGRAEVVV----GKENLVYEAGPFSYFGCQALTQNIGIAESPTNNSSAAQAYGGSLQSVNLDS 335 (396)
Q Consensus 260 ~~LY~~g~~~d~f~LIL~Grv~V~~----G~e~~~~E~gpfs~~G~~aL~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~ 335 (396)
..||+.|++++++.+|++|+|++.. |+|-...-.||..+||..++...
T Consensus 2 ~~l~~~g~~~~~~~~i~~G~v~~~~~~~~G~e~~l~~~~~g~~~G~~~~~~~---------------------------- 53 (193)
T TIGR03697 2 KTIFFPGDPAEKVYFLRRGAVKLSRVYESGEEITVALLRENSVFGVLSLITG---------------------------- 53 (193)
T ss_pred CceecCCCCCCcEEEEEecEEEEEEeCCCCcEeeeEEccCCCEeeeeeeccC----------------------------
Confidence 3589999999999999999999887 88888888999999998776641
Q ss_pred cCCcccccCcEEEEcCCeEEEEEeHHHHHHHHH
Q psy4847 336 ILRYTFVPDYSVRATTEMFYVKIRRSFYLAAKR 368 (396)
Q Consensus 336 ~~~~~~~PD~sv~~~~d~~~~~Itr~~Y~~al~ 368 (396)
..+..-|+++|.+||.++.|++..+...+.
T Consensus 54 ---~~~~~~~~~~A~~~~~v~~i~~~~~~~l~~ 83 (193)
T TIGR03697 54 ---HRSDRFYHAVAFTRVELLAVPIEQVEKAIE 83 (193)
T ss_pred ---CCCccceEEEEecceEEEEeeHHHHHHHHH
Confidence 000012478999999999999999887653
No 107
>PRK10402 DNA-binding transcriptional activator YeiL; Provisional
Probab=97.73 E-value=0.00011 Score=69.15 Aligned_cols=87 Identities=14% Similarity=0.147 Sum_probs=70.5
Q ss_pred HhcCCCCCCCccccccccCcccceEEEEEeeEEEEEE----cCCcceeecCCccchhhhhcccccccCCCCCCCCCcccc
Q psy4847 248 TQKGTSQQKPTFKSLKKRNKPVDYFVLILEGRAEVVV----GKENLVYEAGPFSYFGCQALTQNIGIAESPTNNSSAAQA 323 (396)
Q Consensus 248 l~~~~v~~~~~~~~LY~~g~~~d~f~LIL~Grv~V~~----G~e~~~~E~gpfs~~G~~aL~~~~~~~~~~~~~~~~~~~ 323 (396)
.+.......++...|+..|++++++.+|++|.|.|.. |++-+..-.+|..+||..++... .+
T Consensus 28 ~~~~~~~~~~kge~l~~~G~~~~~~y~V~~G~v~v~~~~~~G~e~~~~~~~~g~~~G~~~~~~~-----~~--------- 93 (226)
T PRK10402 28 SADTELFHFLAREYIVQEGQQPSYLFYLTRGRAKLYATLANGKVSLIDFFAAPCFIGEIELIDK-----DH--------- 93 (226)
T ss_pred HhhhhheeeCCCCEEEcCCCCCceEEEEEeCEEEEEEECCCCCEeeeeecCCCCeEEeehhhcC-----CC---------
Confidence 3344556677888999999999999999999999987 88889999999999999876541 00
Q ss_pred cCCCcccccccccCCcccccCcEEEEcCCeEEEEEeHHHHHHHH
Q psy4847 324 YGGSLQSVNLDSILRYTFVPDYSVRATTEMFYVKIRRSFYLAAK 367 (396)
Q Consensus 324 ~~~s~~~~~~~~~~~~~~~PD~sv~~~~d~~~~~Itr~~Y~~al 367 (396)
..+++.|+++|..+.|++..+...+
T Consensus 94 -------------------~~~~~~A~~~~~i~~i~~~~~~~ll 118 (226)
T PRK10402 94 -------------------ETKAVQAIEECWCLALPMKDCRPLL 118 (226)
T ss_pred -------------------CCccEEEeccEEEEEEEHHHHHHHH
Confidence 1248999999999999998766544
No 108
>PRK11161 fumarate/nitrate reduction transcriptional regulator; Provisional
Probab=97.67 E-value=0.00025 Score=66.70 Aligned_cols=95 Identities=13% Similarity=0.013 Sum_probs=73.4
Q ss_pred cHHHHHHHHhcCC-CCCCCccccccccCcccceEEEEEeeEEEEEE----cCCcceeecCCccchhhhhcccccccCCCC
Q psy4847 240 VGSLLDRITQKGT-SQQKPTFKSLKKRNKPVDYFVLILEGRAEVVV----GKENLVYEAGPFSYFGCQALTQNIGIAESP 314 (396)
Q Consensus 240 ~e~vL~~Ll~~~~-v~~~~~~~~LY~~g~~~d~f~LIL~Grv~V~~----G~e~~~~E~gpfs~~G~~aL~~~~~~~~~~ 314 (396)
++..+.+|++... .....|+..||+.|++++++++|++|.|.+.. |++....-.+|..+||..++...
T Consensus 25 ~~~~l~~L~~~~~~~~~~~kge~l~~~Gd~~~~ly~v~~G~v~~~~~~~~G~e~i~~~~~~gd~~g~~~~~~~------- 97 (235)
T PRK11161 25 NEHELDQLDNIIERKKPIQKGQTLFKAGDELKSLYAIRSGTIKSYTITEQGDEQITGFHLAGDLVGFDAIGSG------- 97 (235)
T ss_pred CHHHHHHHHHhhhhceeecCCCEeECCCCCcceEEEEeeceEEEEEECCCCCEEEEEeccCCceeccccccCC-------
Confidence 4555667765543 34567888999999999999999999999887 77778888899999997554320
Q ss_pred CCCCCcccccCCCcccccccccCCcccccCcEEEEcCCeEEEEEeHHHHHHHHH
Q psy4847 315 TNNSSAAQAYGGSLQSVNLDSILRYTFVPDYSVRATTEMFYVKIRRSFYLAAKR 368 (396)
Q Consensus 315 ~~~~~~~~~~~~s~~~~~~~~~~~~~~~PD~sv~~~~d~~~~~Itr~~Y~~al~ 368 (396)
.+.++++|++++.++.|++..+...+.
T Consensus 98 ---------------------------~~~~~~~a~~~~~i~~ip~~~f~~l~~ 124 (235)
T PRK11161 98 ---------------------------QHPSFAQALETSMVCEIPFETLDDLSG 124 (235)
T ss_pred ---------------------------CCcceEEEeccEEEEEEEHHHHHHHHH
Confidence 011278999999999999998877543
No 109
>KOG0474|consensus
Probab=97.64 E-value=5.1e-05 Score=80.05 Aligned_cols=126 Identities=21% Similarity=0.294 Sum_probs=93.6
Q ss_pred ccccccccccccCCCEEEEeCCCChhHHHHHHHHHcCCcEEEEEeCCCC----cEEEEEEhhhhcc-------cCC--c-
Q psy4847 40 LRRKIVGDVMTKLEDVYMLSYDAILDFETVSEIMKSGYSRIPVYEDRRT----NIVTMFYIKDLAL-------VDP--D- 105 (396)
Q Consensus 40 l~~~tV~dIMtp~~dv~~l~~d~~l~~e~i~~i~~~g~sriPV~~~~~~----~IVGiL~vkDLl~-------~~~--~- 105 (396)
++..+|+|||.+ .+++++.-..+. .+++.+..+.|..+||+|+..+ .+.|+|-.+.|+. ... .
T Consensus 579 mr~L~a~ev~~~--pvi~l~~~ekV~-~Iv~vLk~t~HngFPVvd~~~~~~~~~l~GlILRshl~vlL~~~~f~~~~~~~ 655 (762)
T KOG0474|consen 579 MRNLTAGEVMSK--PVICLNRVEKVA-VIVDVLKSTNHNGFPVVDEPPSNEAGRLHGLILRSHLLVLLKKRVFVEESRST 655 (762)
T ss_pred hhhhhHhhhccC--CeEEEechhhHH-HHHHHHHhcCcCCCccccCCCCccchhhhHHHHHHHHHHHHHhhhhhccCccc
Confidence 577899999997 499999999998 8888889999999999986433 6778877766641 100 0
Q ss_pred ----------------cccchh-------------hhhhhhcCCceEEcCCCCHHHHHHHHHhcCCceEEEEEEeCCCCC
Q psy4847 106 ----------------DNTPLK-------------TLCQFYQNSCYFVFEDTTLDVLLKQFKEGIKGHMAFVHRVNNEGE 156 (396)
Q Consensus 106 ----------------~~~~l~-------------~v~~~~~~~v~~V~~dt~L~~~L~~f~~~~~~h~avV~~~~~~~~ 156 (396)
...+++ ++-.||+..+++|++++++..++..|+.=.-.|+.+|-
T Consensus 656 ~~~~~~~~~~~~d~a~r~~~i~dv~lt~~e~~~yvDl~p~~n~sPytV~~~mSl~k~~~lFR~lGLRhLlVv~------- 728 (762)
T KOG0474|consen 656 FDLPVRRKFTFRDFAKREPSIEDVHLTSEEMEMYVDLHPFMNPSPYTVPETMSLAKAFILFRQLGLRHLLVVP------- 728 (762)
T ss_pred cCcchhhcCCHHHhhhcCCchhhhhcchHhHhhccccccccCCCCcccCcccchHHHHHHHHHhcceeEEEec-------
Confidence 000111 24445677789999999999999999985466777774
Q ss_pred CCCCCceeeeecHHHHH-HHHH
Q psy4847 157 GDPFYETVGLITLEDVI-EELI 177 (396)
Q Consensus 157 ~De~g~~vGIVTleDIi-Eeli 177 (396)
...+++||+|+.|+. +.+.
T Consensus 729 --~~~~~~gilTR~D~~~~~~l 748 (762)
T KOG0474|consen 729 --KTNRVVGILTRKDLARYRIL 748 (762)
T ss_pred --CCCceeEEEehhhhhhHHHh
Confidence 445779999999998 4443
No 110
>cd04603 CBS_pair_KefB_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the KefB (Kef-type K+ transport systems) domain which is involved in inorganic ion transport and metabolism. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=97.62 E-value=0.00012 Score=60.39 Aligned_cols=74 Identities=12% Similarity=0.153 Sum_probs=56.5
Q ss_pred cCCCCHHHHHHHHHHhcccccccccccccCCCEEEEeCCCChhHHHHHHHHHcCCcEEEEEeCCCCcEEEEEEhhhhcc
Q psy4847 23 FNDLEKDEVNIISGALELRRKIVGDVMTKLEDVYMLSYDAILDFETVSEIMKSGYSRIPVYEDRRTNIVTMFYIKDLAL 101 (396)
Q Consensus 23 ~~~l~~~E~~~i~~alel~~~tV~dIMtp~~dv~~l~~d~~l~~e~i~~i~~~g~sriPV~~~~~~~IVGiL~vkDLl~ 101 (396)
.|.++..+..-+.. -+..+.+|.++|++. +.++..++++. ++++.|.+++..++||++++ ++++|+|+..|++.
T Consensus 37 ~G~v~~~dl~~~~~-~~~~~~~v~~~~~~~--~~~v~~~~~l~-~al~~m~~~~~~~lpVvd~~-~~~~Giit~~di~~ 110 (111)
T cd04603 37 LGQVTLSDLLEIGP-NDYETLKVCEVYIVP--VPIVYCDSKVT-DLLRIFRETEPPVVAVVDKE-GKLVGTIYERELLR 110 (111)
T ss_pred EEEEEHHHHHhhcc-ccccccChhheeecC--CcEECCCCcHH-HHHHHHHHcCCCeEEEEcCC-CeEEEEEEhHHhhc
Confidence 35566655432211 012345799999754 67899999999 99999999999999999865 78999999999874
No 111
>PLN03192 Voltage-dependent potassium channel; Provisional
Probab=97.57 E-value=0.0003 Score=78.60 Aligned_cols=97 Identities=18% Similarity=0.220 Sum_probs=78.2
Q ss_pred cHHHHHHHHhcCCCCCCCccccccccCcccceEEEEEeeEEEEEE---cCCcceeecCCccchhhhhcccccccCCCCCC
Q psy4847 240 VGSLLDRITQKGTSQQKPTFKSLKKRNKPVDYFVLILEGRAEVVV---GKENLVYEAGPFSYFGCQALTQNIGIAESPTN 316 (396)
Q Consensus 240 ~e~vL~~Ll~~~~v~~~~~~~~LY~~g~~~d~f~LIL~Grv~V~~---G~e~~~~E~gpfs~~G~~aL~~~~~~~~~~~~ 316 (396)
++..+..|.........++...+|..|++.+.+++|++|+|++.. |+|...-..+|.++||+.++... .++
T Consensus 386 s~~~l~~L~~~~~~~~~~pge~I~~qge~~~~lY~I~~G~V~i~~~~~~~e~~l~~l~~Gd~FGE~~~l~~--~p~---- 459 (823)
T PLN03192 386 SREILLLLVTKMKAEYIPPREDVIMQNEAPDDVYIVVSGEVEIIDSEGEKERVVGTLGCGDIFGEVGALCC--RPQ---- 459 (823)
T ss_pred CHHHHHHHHHhhheeeeCCCCEEEECCCCCceEEEEEecEEEEEEecCCcceeeEEccCCCEecchHHhcC--CCC----
Confidence 456666666665555566777899999999999999999999976 66677788999999999998751 100
Q ss_pred CCCcccccCCCcccccccccCCcccccCcEEEEcCCeEEEEEeHHHHHHHHHH
Q psy4847 317 NSSAAQAYGGSLQSVNLDSILRYTFVPDYSVRATTEMFYVKIRRSFYLAAKRA 369 (396)
Q Consensus 317 ~~~~~~~~~~s~~~~~~~~~~~~~~~PD~sv~~~~d~~~~~Itr~~Y~~al~a 369 (396)
.||+|+.++|+.+.|+|+.+++++..
T Consensus 460 ---------------------------~~t~ra~~~s~ll~l~~~~f~~ll~~ 485 (823)
T PLN03192 460 ---------------------------SFTFRTKTLSQLLRLKTSTLIEAMQT 485 (823)
T ss_pred ---------------------------CCeEEEcccEEEEEEEHHHHHHHHHH
Confidence 25999999999999999999997763
No 112
>cd04617 CBS_pair_4 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera
Probab=97.54 E-value=0.00019 Score=59.71 Aligned_cols=61 Identities=15% Similarity=0.290 Sum_probs=51.7
Q ss_pred ccccccccccccCCCEEEEeCCCChhHHHHHHHHHcCCcEEEEEeCCC--CcEEEEEEhhhhcc
Q psy4847 40 LRRKIVGDVMTKLEDVYMLSYDAILDFETVSEIMKSGYSRIPVYEDRR--TNIVTMFYIKDLAL 101 (396)
Q Consensus 40 l~~~tV~dIMtp~~dv~~l~~d~~l~~e~i~~i~~~g~sriPV~~~~~--~~IVGiL~vkDLl~ 101 (396)
+...++.++|+...++.+++.++++. ++++.|.++++..+||++++. ++++|+|+..||+.
T Consensus 55 ~~~~~~~~~~~~~~~~~~v~~~~~l~-~~~~~~~~~~~~~lpVvd~~~~~~~l~Gvit~~~l~~ 117 (118)
T cd04617 55 LQKVPVGVIMTRMPNITTTTPEESVL-EAAKKLIEHQVDSLPVVEKVDEGLEVIGRITKTNITK 117 (118)
T ss_pred ccCCCHHHHhCCCCCcEEECCCCcHH-HHHHHHHHcCCCEeeEEeCCCccceEEEEEEhhheec
Confidence 34677899998534578999999999 999999999999999998652 58999999999864
No 113
>cd04801 CBS_pair_M50_like This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with the metalloprotease peptidase M50. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=97.54 E-value=0.00016 Score=59.36 Aligned_cols=76 Identities=17% Similarity=0.234 Sum_probs=57.4
Q ss_pred cCCCCHHHHHHHHHHhcccccccccccccCCCEEEEeCCCChhHHHHHHHHHcCCcEEEEEeCCCCcEEEEEEhhhhcc
Q psy4847 23 FNDLEKDEVNIISGALELRRKIVGDVMTKLEDVYMLSYDAILDFETVSEIMKSGYSRIPVYEDRRTNIVTMFYIKDLAL 101 (396)
Q Consensus 23 ~~~l~~~E~~~i~~alel~~~tV~dIMtp~~dv~~l~~d~~l~~e~i~~i~~~g~sriPV~~~~~~~IVGiL~vkDLl~ 101 (396)
.|.+...+....... ...+.++.++|.+...+.++..++++. ++++.|.+++.+++||++++ ++++|+|+.+|++.
T Consensus 38 ~G~v~~~dl~~~~~~-~~~~~~v~~~~~~~~~~~~v~~~~~l~-~a~~~~~~~~~~~l~Vv~~~-~~~~Gvl~~~di~~ 113 (114)
T cd04801 38 VGIISLADLRAIPTS-QWAQTTVIQVMTPAAKLVTVLSEESLA-EVLKLLEEQGLDELAVVEDS-GQVIGLITEADLLR 113 (114)
T ss_pred EEEEEHHHHHHHHHh-hccccchhhhhcccccceEECCCCcHH-HHHHHHHHCCCCeeEEEcCC-CcEEEEEeccceec
Confidence 344665553322111 123568999998755567899999999 99999999999999999764 78999999999863
No 114
>PLN02868 acyl-CoA thioesterase family protein
Probab=97.47 E-value=0.00058 Score=70.35 Aligned_cols=108 Identities=19% Similarity=0.222 Sum_probs=81.5
Q ss_pred cHHHHHHHHhcCCCCCCCccccccccCcccceEEEEEeeEEEEEEcC---CcceeecCCccchhhhhcccccccCCCCCC
Q psy4847 240 VGSLLDRITQKGTSQQKPTFKSLKKRNKPVDYFVLILEGRAEVVVGK---ENLVYEAGPFSYFGCQALTQNIGIAESPTN 316 (396)
Q Consensus 240 ~e~vL~~Ll~~~~v~~~~~~~~LY~~g~~~d~f~LIL~Grv~V~~G~---e~~~~E~gpfs~~G~~aL~~~~~~~~~~~~ 316 (396)
++..+.+|+.+.......+...||++|++++++++|++|+|+|..-. +......+|..+||+. |.. .+
T Consensus 20 ~~~~l~~l~~~~~~~~~~~Ge~I~~~Gd~~~~lyiI~~G~V~v~~~~~~ge~~l~~l~~Gd~fG~~-l~~------~~-- 90 (413)
T PLN02868 20 PSSSLKKIAEVVVPKRYGKGEYVVREGEPGDGLYFIWKGEAEVSGPAEEESRPEFLLKRYDYFGYG-LSG------SV-- 90 (413)
T ss_pred CHHHHHHHHHhceEEEECCCCEEEeCCCcCceEEEEEeCEEEEEEECCCCcEEEEEeCCCCEeehh-hCC------CC--
Confidence 56678889988888888899999999999999999999999998721 5567778999999964 321 00
Q ss_pred CCCcccccCCCcccccccccCCcccccCcEEEEcCCeEEEEEeHHHHHHHHHHhhhhhccCCcccCC
Q psy4847 317 NSSAAQAYGGSLQSVNLDSILRYTFVPDYSVRATTEMFYVKIRRSFYLAAKRATLMEKSKKSEESMS 383 (396)
Q Consensus 317 ~~~~~~~~~~s~~~~~~~~~~~~~~~PD~sv~~~~d~~~~~Itr~~Y~~al~as~~~~~~~~~~~~~ 383 (396)
..++++|.++|..+.|++..++...-.+.. .+.+.|+.|.
T Consensus 91 --------------------------~~~~~~A~~d~~v~~ip~~~~~~~~~~~~~-~~~~~~~~~~ 130 (413)
T PLN02868 91 --------------------------HSADVVAVSELTCLVLPHEHCHLLSPKSIW-DSDKTPKDCS 130 (413)
T ss_pred --------------------------cccEEEECCCEEEEEEcHHHHhhhcccccc-cccCChhhHH
Confidence 123899999999999999987765543333 3344444343
No 115
>cd04604 CBS_pair_KpsF_GutQ_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with KpsF/GutQ domains in the API [A5P (D-arabinose 5-phosphate) isomerase] protein. These APIs catalyze the conversion of the pentose pathway intermediate D-ribulose 5-phosphate into A5P, a precursor of 3-deoxy-D-manno-octulosonate, which is an integral carbohydrate component of various glycolipids coating the surface of the outer membrane of Gram-negative bacteria, including lipopolysaccharide and many group 2 K-antigen capsules. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other funct
Probab=97.45 E-value=0.00039 Score=56.69 Aligned_cols=75 Identities=21% Similarity=0.279 Sum_probs=59.0
Q ss_pred cCCCCHHH-HHHHHHHhcccccccccccccCCCEEEEeCCCChhHHHHHHHHHcCCcEEEEEeCCCCcEEEEEEhhhhcc
Q psy4847 23 FNDLEKDE-VNIISGALELRRKIVGDVMTKLEDVYMLSYDAILDFETVSEIMKSGYSRIPVYEDRRTNIVTMFYIKDLAL 101 (396)
Q Consensus 23 ~~~l~~~E-~~~i~~alel~~~tV~dIMtp~~dv~~l~~d~~l~~e~i~~i~~~g~sriPV~~~~~~~IVGiL~vkDLl~ 101 (396)
.|.+...+ .+.+....++...++.++|.+. +.+++.++++. ++++.+.+++...+||++++ ++++|+|+..||+.
T Consensus 38 ~G~v~~~~i~~~~~~~~~~~~~~v~~~~~~~--~~~v~~~~~~~-~~~~~~~~~~~~~~~Vv~~~-~~~iG~it~~di~~ 113 (114)
T cd04604 38 VGIFTDGDLRRALEKGLDILTLPVADVMTRN--PKTIDPDALAA-EALELMEENKITALPVVDDN-GRPVGVLHIHDLLR 113 (114)
T ss_pred EEEechHHHHHHHhccCccccCCHHHhhccC--CeEECCCCcHH-HHHHHHHHcCCCEEEEECCC-CCEEEEEEHHHhhc
Confidence 44466555 3344444455556899999865 67899999999 99999999999999999765 89999999999864
No 116
>TIGR00400 mgtE Mg2+ transporter (mgtE). This family of prokaryotic proteins models a class of Mg++ transporter first described in Bacillus firmus. May form a homodimer.
Probab=97.44 E-value=5.5e-05 Score=78.81 Aligned_cols=113 Identities=14% Similarity=0.192 Sum_probs=85.0
Q ss_pred cccccccccccCCCEEEEeCCCChhHHHHHHHHHcCCcEEEEEeCCCCcEEEEEEhhhhcccCCccccchhhhhhhhcCC
Q psy4847 41 RRKIVGDVMTKLEDVYMLSYDAILDFETVSEIMKSGYSRIPVYEDRRTNIVTMFYIKDLALVDPDDNTPLKTLCQFYQNS 120 (396)
Q Consensus 41 ~~~tV~dIMtp~~dv~~l~~d~~l~~e~i~~i~~~g~sriPV~~~~~~~IVGiL~vkDLl~~~~~~~~~l~~v~~~~~~~ 120 (396)
.+.+|+++|++. +++++.++++. ++++.|.++++..+||++++ |+++|+|+.+|++..-..+ ..++++. ..
T Consensus 193 ~~~~v~~im~~~--~~~v~~~~~~~-eal~~m~~~~~~~lpVVD~~-g~lvGiIt~~Dil~~l~~~--~~ed~~~---~~ 263 (449)
T TIGR00400 193 PEEILSSIMRSS--VFSIVGVNDQE-EVARLIQKYDFLAVPVVDNE-GRLVGIVTVDDIIDVIQSE--ATEDFYM---IA 263 (449)
T ss_pred CCCcHHHHhCCC--CeeECCCCCHH-HHHHHHHHcCCCEEeEEcCC-CeEEEEEEHHHHHHHHHhh--hHHHHHH---hc
Confidence 567899999874 78899999999 99999999999999999765 7899999999998654333 2355554 23
Q ss_pred ceEEcCCCCHHHHHHHHHhcCCceEEEEEEeCCCCCCCCCCceeeeecHHHHHHHH
Q psy4847 121 CYFVFEDTTLDVLLKQFKEGIKGHMAFVHRVNNEGEGDPFYETVGLITLEDVIEEL 176 (396)
Q Consensus 121 v~~V~~dt~L~~~L~~f~~~~~~h~avV~~~~~~~~~De~g~~vGIVTleDIiEel 176 (396)
.....++..+.+++..|-++ +....+|. .+.|++| ..|+...
T Consensus 264 gv~~~~~~~l~~~~~~~~~~-R~~wL~v~------------~~~~~~t-~~ii~~f 305 (449)
T TIGR00400 264 AVKPLDDSYFDTSILVMAKN-RIIWLLVL------------LVSSTFT-ATIISNY 305 (449)
T ss_pred CCCCCcchhhhchHHHHHHh-ccchHHHH------------HHHHHHH-HHHHHHH
Confidence 33333567778888888774 66666663 5788888 6676654
No 117
>cd04619 CBS_pair_6 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera
Probab=97.43 E-value=0.00028 Score=58.30 Aligned_cols=75 Identities=20% Similarity=0.193 Sum_probs=57.2
Q ss_pred cCCCCHHHHHHHHHH--hcccccccccccccCCCEEEEeCCCChhHHHHHHHHHcCCcEEEEEeCCCCcEEEEEEhhhhc
Q psy4847 23 FNDLEKDEVNIISGA--LELRRKIVGDVMTKLEDVYMLSYDAILDFETVSEIMKSGYSRIPVYEDRRTNIVTMFYIKDLA 100 (396)
Q Consensus 23 ~~~l~~~E~~~i~~a--lel~~~tV~dIMtp~~dv~~l~~d~~l~~e~i~~i~~~g~sriPV~~~~~~~IVGiL~vkDLl 100 (396)
.|.++..+....... ....+.++.++|.. ++.++..++++. ++++.|.+++..++||++++ ++++|+|+.+|++
T Consensus 37 ~G~vt~~dl~~~~~~~~~~~~~~~v~~~~~~--~~~~v~~~~~l~-~a~~~m~~~~~~~lpVvd~~-~~~~Gvi~~~dl~ 112 (114)
T cd04619 37 AGVLTKTDVVRQMGRCGGPGCTAPVENVMTR--AVVSCRPGDLLH-DVWQVMKQRGLKNIPVVDEN-ARPLGVLNARDAL 112 (114)
T ss_pred EEEEehHHHHHHHhhcCCCcccCCHHHHhcC--CCeeECCCCCHH-HHHHHHHHcCCCeEEEECCC-CcEEEEEEhHhhc
Confidence 345666654321111 12345679999975 377899999999 99999999999999999765 7899999999986
Q ss_pred c
Q psy4847 101 L 101 (396)
Q Consensus 101 ~ 101 (396)
.
T Consensus 113 ~ 113 (114)
T cd04619 113 K 113 (114)
T ss_pred c
Confidence 4
No 118
>cd04597 CBS_pair_DRTGG_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with a DRTGG domain upstream. The function of the DRTGG domain, named after its conserved residues, is unknown. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=97.42 E-value=0.00036 Score=58.32 Aligned_cols=72 Identities=17% Similarity=0.212 Sum_probs=56.3
Q ss_pred CCCCHHHHHHHHHHhcc------cc--cccccccccCCCEEEEeCCCChhHHHHHHHHHcCCcEEEEEeCCCCcEEEEEE
Q psy4847 24 NDLEKDEVNIISGALEL------RR--KIVGDVMTKLEDVYMLSYDAILDFETVSEIMKSGYSRIPVYEDRRTNIVTMFY 95 (396)
Q Consensus 24 ~~l~~~E~~~i~~alel------~~--~tV~dIMtp~~dv~~l~~d~~l~~e~i~~i~~~g~sriPV~~~~~~~IVGiL~ 95 (396)
|.++.+. +++...+.+ .+ .+|+++|.+. +..++.++++. ++++.|.+.++..+||++++ ++++|+|+
T Consensus 32 g~~n~e~-~~vl~~~~~~~p~ll~~v~~~v~dim~~~--~~~v~~~~~l~-~a~~~~~~~~~~~lpVvd~~-~~l~Givt 106 (113)
T cd04597 32 GEPNPQT-RYVLEYLGIEPPILLADVHPRVRDVINRK--PVTARPNDPLR-EALNLMHEHNIRTLPVVDDD-GTPAGIIT 106 (113)
T ss_pred CCCCHHH-HHHHHHcCCCCchhhcchhhhHHHhcCCC--CCEECCcCcHH-HHHHHHHHcCCCEEEEECCC-CeEEEEEE
Confidence 4455544 444444432 22 6799999864 77899999999 99999999999999999765 78999999
Q ss_pred hhhhc
Q psy4847 96 IKDLA 100 (396)
Q Consensus 96 vkDLl 100 (396)
.+||.
T Consensus 107 ~~dl~ 111 (113)
T cd04597 107 LLDLA 111 (113)
T ss_pred HHHhh
Confidence 99986
No 119
>PRK13918 CRP/FNR family transcriptional regulator; Provisional
Probab=97.41 E-value=0.00043 Score=63.36 Aligned_cols=74 Identities=18% Similarity=0.169 Sum_probs=60.5
Q ss_pred CCCccccccccCc--ccceEEEEEeeEEEEEE----cCCcceeecCCccchhhhhcccccccCCCCCCCCCcccccCCCc
Q psy4847 255 QKPTFKSLKKRNK--PVDYFVLILEGRAEVVV----GKENLVYEAGPFSYFGCQALTQNIGIAESPTNNSSAAQAYGGSL 328 (396)
Q Consensus 255 ~~~~~~~LY~~g~--~~d~f~LIL~Grv~V~~----G~e~~~~E~gpfs~~G~~aL~~~~~~~~~~~~~~~~~~~~~~s~ 328 (396)
...+...||..|+ +++++++|++|+|.+.. |+|-...-.+|..+||..++... +
T Consensus 10 ~~~kg~~l~~~Gd~~~~~~~y~I~~G~vr~~~~~~~G~e~~l~~~~~Gd~~G~~~~~~~------~-------------- 69 (202)
T PRK13918 10 TYRPGAVILYPGVPGPSDMLYRVRSGLVRLHTVDDEGNALTLRYVRPGEYFGEEALAGA------E-------------- 69 (202)
T ss_pred EecCCCEEEcCCCCCCCCeEEEEEeeEEEEEEECCCCCEEEEEEecCCCeechHHhcCC------C--------------
Confidence 3456778999999 78999999999999987 88888888999999998765420 0
Q ss_pred ccccccccCCcccccCcEEEEcCCeEEEEEeHHH
Q psy4847 329 QSVNLDSILRYTFVPDYSVRATTEMFYVKIRRSF 362 (396)
Q Consensus 329 ~~~~~~~~~~~~~~PD~sv~~~~d~~~~~Itr~~ 362 (396)
..|++.|++||+.+.|++..
T Consensus 70 --------------~~~~~~A~~~~~v~~i~~~~ 89 (202)
T PRK13918 70 --------------RAYFAEAVTDSRIDVLNPAL 89 (202)
T ss_pred --------------CCceEEEcCceEEEEEEHHH
Confidence 12489999999999998654
No 120
>cd04607 CBS_pair_NTP_transferase_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domain associated with the NTP (Nucleotidyl transferase) domain downstream. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=97.36 E-value=0.00044 Score=56.69 Aligned_cols=55 Identities=15% Similarity=0.274 Sum_probs=48.8
Q ss_pred ccccccccccCCCEEEEeCCCChhHHHHHHHHHcCCcEEEEEeCCCCcEEEEEEhhhhc
Q psy4847 42 RKIVGDVMTKLEDVYMLSYDAILDFETVSEIMKSGYSRIPVYEDRRTNIVTMFYIKDLA 100 (396)
Q Consensus 42 ~~tV~dIMtp~~dv~~l~~d~~l~~e~i~~i~~~g~sriPV~~~~~~~IVGiL~vkDLl 100 (396)
+.++.++|.+. +.++++++++. ++++.|.+++..++||++++ ++++|+|+.+|++
T Consensus 57 ~~~v~~~~~~~--~~~v~~~~~l~-~~~~~~~~~~~~~~~Vv~~~-~~~~Gvit~~di~ 111 (113)
T cd04607 57 DDPVSEVMNRN--PITAKVGSSRE-EILALMRERSIRHLPILDEE-GRVVGLATLDDLL 111 (113)
T ss_pred CCCHHHhhcCC--CEEEcCCCCHH-HHHHHHHHCCCCEEEEECCC-CCEEEEEEhHHhc
Confidence 45799999754 67899999999 99999999999999999765 7899999999986
No 121
>PRK09391 fixK transcriptional regulator FixK; Provisional
Probab=97.32 E-value=0.00087 Score=63.30 Aligned_cols=80 Identities=16% Similarity=0.175 Sum_probs=64.7
Q ss_pred CCCCCCccccccccCcccceEEEEEeeEEEEEE----cCCcceeecCCccchhhhhcccccccCCCCCCCCCcccccCCC
Q psy4847 252 TSQQKPTFKSLKKRNKPVDYFVLILEGRAEVVV----GKENLVYEAGPFSYFGCQALTQNIGIAESPTNNSSAAQAYGGS 327 (396)
Q Consensus 252 ~v~~~~~~~~LY~~g~~~d~f~LIL~Grv~V~~----G~e~~~~E~gpfs~~G~~aL~~~~~~~~~~~~~~~~~~~~~~s 327 (396)
......+...||.+|+++++|++|++|+|.+.. |+|.+..-.+|..+||... .
T Consensus 39 ~~~~~~kge~l~~~Gd~~~~ly~I~~G~vkl~~~~~~G~e~i~~~~~~Gd~fG~~~--~--------------------- 95 (230)
T PRK09391 39 SEFSYKKGEEIYGEGEPADYVYQVESGAVRTYRLLSDGRRQIGAFHLPGDVFGLES--G--------------------- 95 (230)
T ss_pred eeEEECCCCEEECCCCCCCeEEEEEeCEEEEEEECCCCcEEEEEEecCCceecccC--C---------------------
Confidence 455567778899999999999999999999987 8887777789999999421 0
Q ss_pred cccccccccCCcccccCcEEEEcCCeEEEEEeHHHHHHHH
Q psy4847 328 LQSVNLDSILRYTFVPDYSVRATTEMFYVKIRRSFYLAAK 367 (396)
Q Consensus 328 ~~~~~~~~~~~~~~~PD~sv~~~~d~~~~~Itr~~Y~~al 367 (396)
..| .|+++|++||.++.|+++.+...+
T Consensus 96 -----------~~~--~~~~~A~~ds~v~~i~~~~f~~l~ 122 (230)
T PRK09391 96 -----------STH--RFTAEAIVDTTVRLIKRRSLEQAA 122 (230)
T ss_pred -----------CcC--CeEEEEcCceEEEEEEHHHHHHHH
Confidence 001 268999999999999999877654
No 122
>cd04585 CBS_pair_ACT_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the acetoin utilization proteins in bacteria. Acetoin is a product of fermentative metabolism in many prokaryotic and eukaryotic microorganisms. They produce acetoin as an external carbon storage compound and then later reuse it as a carbon and energy source during their stationary phase and sporulation. In addition these CBS domains are associated with a downstream ACT domain, which is linked to a wide range of metabolic enzymes that are regulated by amino acid concentration. Pairs of ACT domains bind specifically to a particular amino acid leading to regulation of the linked enzyme. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The i
Probab=97.23 E-value=0.00058 Score=56.10 Aligned_cols=57 Identities=26% Similarity=0.349 Sum_probs=49.9
Q ss_pred cccccccccccCCCEEEEeCCCChhHHHHHHHHHcCCcEEEEEeCCCCcEEEEEEhhhhcc
Q psy4847 41 RRKIVGDVMTKLEDVYMLSYDAILDFETVSEIMKSGYSRIPVYEDRRTNIVTMFYIKDLAL 101 (396)
Q Consensus 41 ~~~tV~dIMtp~~dv~~l~~d~~l~~e~i~~i~~~g~sriPV~~~~~~~IVGiL~vkDLl~ 101 (396)
...++.++|.+. +.+++.++++. +++..+.+.+.+++||++++ ++++|+|+.+|++.
T Consensus 65 ~~~~~~~~~~~~--~~~v~~~~~l~-~~~~~~~~~~~~~~~Vv~~~-~~~~Gvvt~~di~~ 121 (122)
T cd04585 65 SKIKVSDIMTRD--PITVSPDASVE-EAAELMLERKISGLPVVDDQ-GRLVGIITESDLFR 121 (122)
T ss_pred cccCHHHhccCC--CeEeCCCCcHH-HHHHHHHHcCCCceeEECCC-CcEEEEEEHHHhhh
Confidence 357799999763 78899999999 99999999999999999764 79999999999864
No 123
>cd04618 CBS_pair_5 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera
Probab=97.21 E-value=0.00075 Score=54.93 Aligned_cols=46 Identities=11% Similarity=0.159 Sum_probs=41.7
Q ss_pred EEEEeCCCChhHHHHHHHHHcCCcEEEEEeCCCCcEEEEEEhhhhcc
Q psy4847 55 VYMLSYDAILDFETVSEIMKSGYSRIPVYEDRRTNIVTMFYIKDLAL 101 (396)
Q Consensus 55 v~~l~~d~~l~~e~i~~i~~~g~sriPV~~~~~~~IVGiL~vkDLl~ 101 (396)
+.++.+++++. ++++.|.+++..++||++++.++++|+|+.+|++.
T Consensus 52 ~~~v~~~~~l~-~a~~~m~~~~~~~lpVvd~~~~~~~giit~~d~~~ 97 (98)
T cd04618 52 LVSIHPERSLF-DAALLLLKNKIHRLPVIDPSTGTGLYILTSRRILK 97 (98)
T ss_pred eEEeCCCCcHH-HHHHHHHHCCCCEeeEEECCCCCceEEeehhhhhc
Confidence 67899999999 99999999999999999865478999999999874
No 124
>cd04587 CBS_pair_CAP-ED_DUF294_PBI_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with either the CAP_ED (cAMP receptor protein effector domain) family of transcription factors and the DUF294 domain or the PB1 (Phox and Bem1p) domain. Members of CAP_ED, include CAP which binds cAMP, FNR (fumarate and nitrate reductase) which uses an iron-sulfur cluster to sense oxygen, and CooA a heme containing CO sensor. In all cases binding of the effector leads to conformational changes and the ability to activate transcription. DUF294 is a putative nucleotidyltransferase with a conserved DxD motif. The PB1 domain adopts a beta-grasp fold, similar to that found in ubiquitin and Ras-binding domains. A motif, variously termed OPR, PC and AID, represents the most conserved region of the majority of PB1 domains, and is necessary for PB1 domain function. This function is the formation of PB1 domain heterodimers, although not all PB1 domain pai
Probab=97.20 E-value=0.00062 Score=55.48 Aligned_cols=75 Identities=15% Similarity=0.293 Sum_probs=56.2
Q ss_pred cCCCCHHHHH--HHHHHhcccccccccccccCCCEEEEeCCCChhHHHHHHHHHcCCcEEEEEeCCCCcEEEEEEhhhhc
Q psy4847 23 FNDLEKDEVN--IISGALELRRKIVGDVMTKLEDVYMLSYDAILDFETVSEIMKSGYSRIPVYEDRRTNIVTMFYIKDLA 100 (396)
Q Consensus 23 ~~~l~~~E~~--~i~~alel~~~tV~dIMtp~~dv~~l~~d~~l~~e~i~~i~~~g~sriPV~~~~~~~IVGiL~vkDLl 100 (396)
-|.++..+.. .+..-......++.++|.+. +.+++.++++. ++++.+.+++..++||++++ ++++|+|+.+|++
T Consensus 36 ~G~v~~~dl~~~~~~~~~~~~~~~v~~i~~~~--~~~v~~~~~l~-~~~~~~~~~~~~~l~Vv~~~-~~~~Gvvs~~dl~ 111 (113)
T cd04587 36 VGIFTSKDIALRVVAQGLDPESTLVERVMTPN--PVCATSDTPVL-EALHLMVQGKFRHLPVVDKS-GQVVGLLDVTKLT 111 (113)
T ss_pred EEEEEhHHHHHHHHhcCCCcCcCCHHHhcCCC--CeEEcCCCCHH-HHHHHHHHcCCCcccEECCC-CCEEEEEEHHHhc
Confidence 4446665542 22221222236799999754 67899999999 99999999999999999765 7899999999987
Q ss_pred c
Q psy4847 101 L 101 (396)
Q Consensus 101 ~ 101 (396)
.
T Consensus 112 ~ 112 (113)
T cd04587 112 H 112 (113)
T ss_pred c
Confidence 4
No 125
>cd04610 CBS_pair_ParBc_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with a ParBc (ParB-like nuclease) domain downstream. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=97.19 E-value=0.00075 Score=54.44 Aligned_cols=56 Identities=18% Similarity=0.354 Sum_probs=49.0
Q ss_pred ccccccccccCCCEEEEeCCCChhHHHHHHHHHcCCcEEEEEeCCCCcEEEEEEhhhhcc
Q psy4847 42 RKIVGDVMTKLEDVYMLSYDAILDFETVSEIMKSGYSRIPVYEDRRTNIVTMFYIKDLAL 101 (396)
Q Consensus 42 ~~tV~dIMtp~~dv~~l~~d~~l~~e~i~~i~~~g~sriPV~~~~~~~IVGiL~vkDLl~ 101 (396)
+..++++|.+. +.+++.++++. ++++.|.+++..++||++++ |+++|+++.+|++.
T Consensus 51 ~~~~~~~~~~~--~~~v~~~~~l~-~~~~~~~~~~~~~~~Vv~~~-g~~~Gvi~~~di~~ 106 (107)
T cd04610 51 DETVEEIMSKD--LVVAVPEMDIM-DAARVMFRTGISKLPVVDEN-NNLVGIITNTDVIR 106 (107)
T ss_pred cccHHHhCCCC--CeEECCCCCHH-HHHHHHHHhCCCeEeEECCC-CeEEEEEEHHHhhc
Confidence 45799999765 67899999999 99999999999999999765 78999999999864
No 126
>PRK07107 inosine 5-monophosphate dehydrogenase; Validated
Probab=97.18 E-value=0.00057 Score=72.22 Aligned_cols=62 Identities=21% Similarity=0.269 Sum_probs=55.1
Q ss_pred ccccccccccccCCCEEEEeCCCChhHHHHHHHHHcCCcEEEEEeCCCCcEEEEEEhhhhcccC
Q psy4847 40 LRRKIVGDVMTKLEDVYMLSYDAILDFETVSEIMKSGYSRIPVYEDRRTNIVTMFYIKDLALVD 103 (396)
Q Consensus 40 l~~~tV~dIMtp~~dv~~l~~d~~l~~e~i~~i~~~g~sriPV~~~~~~~IVGiL~vkDLl~~~ 103 (396)
..+.+|+++|++..+++++++++++. ++++.|.+++..++||++++ ++++|+|+.+||+...
T Consensus 158 ~~~~~V~dIMt~~~~~itv~~d~~l~-eAl~lM~e~~i~~LPVVD~~-g~LvGIIT~~Dilk~~ 219 (502)
T PRK07107 158 SLDTKVKDFMTPFEKLVTANEGTTLK-EANDIIWDHKLNTLPIVDKN-GNLVYLVFRKDYDSHK 219 (502)
T ss_pred CCCCCHHHHhCCCCCeEEECCCCcHH-HHHHHHHHcCCCEEEEEcCC-CeEEEEEEhHHHHhcc
Confidence 45678999999866789999999999 99999999999999999765 7899999999998643
No 127
>cd04582 CBS_pair_ABC_OpuCA_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with the ABC transporter OpuCA. OpuCA is the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment but the function of the CBS domains in OpuCA remains unknown. In the related ABC transporter, OpuA, the tandem CBS domains have been shown to function as sensors for ionic strength, whereby they control the transport activity through an electronic switching mechanism. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. They are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzi
Probab=97.14 E-value=0.0012 Score=53.14 Aligned_cols=69 Identities=17% Similarity=0.163 Sum_probs=54.0
Q ss_pred cCCCCHHHHHHHHHHhcccccccccccccCCCEEEEeCCCChhHHHHHHHHHcCCcEEEEEeCCCCcEEEEEEhhhhcc
Q psy4847 23 FNDLEKDEVNIISGALELRRKIVGDVMTKLEDVYMLSYDAILDFETVSEIMKSGYSRIPVYEDRRTNIVTMFYIKDLAL 101 (396)
Q Consensus 23 ~~~l~~~E~~~i~~alel~~~tV~dIMtp~~dv~~l~~d~~l~~e~i~~i~~~g~sriPV~~~~~~~IVGiL~vkDLl~ 101 (396)
.|.++..+... +. ..++.++|++. +.+++.++++. ++++.|.+.++..+||++++ ++++|+|+.+||+.
T Consensus 37 ~Giv~~~dl~~---~~---~~~~~~~~~~~--~~~~~~~~~~~-~~~~~~~~~~~~~~~Vv~~~-~~~~Gvi~~~~l~~ 105 (106)
T cd04582 37 LGFVTRREAAR---AS---GGCCGDHAEPF--KVTVSVDDDLR-IVLSRMFAHDMSWLPCVDED-GRYVGEVTQRSIAD 105 (106)
T ss_pred EEEEeHHHHHH---hc---ccchhhhcccC--CEEECCCCCHH-HHHHHHHHCCCCeeeEECCC-CcEEEEEEHHHhhc
Confidence 34466555432 21 23588999865 67799999999 99999999999999999765 78999999999863
No 128
>cd04640 CBS_pair_27 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=97.14 E-value=0.00056 Score=57.58 Aligned_cols=61 Identities=26% Similarity=0.291 Sum_probs=47.9
Q ss_pred ccccccccccccCCCEEEEe----CCCChhHHHHHHHHHcCCcEEEEEeCCCCcEEEEEEhhhhcc
Q psy4847 40 LRRKIVGDVMTKLEDVYMLS----YDAILDFETVSEIMKSGYSRIPVYEDRRTNIVTMFYIKDLAL 101 (396)
Q Consensus 40 l~~~tV~dIMtp~~dv~~l~----~d~~l~~e~i~~i~~~g~sriPV~~~~~~~IVGiL~vkDLl~ 101 (396)
..+.+|+++|++...+..++ .++++. ++++.|.+++..++||++++.++++|+|+..||+.
T Consensus 61 ~~~~~v~~im~~~~~~~~~~~~~~~~~~l~-~~l~~m~~~~~~~lpVvd~~~~~~~G~it~~di~~ 125 (126)
T cd04640 61 RSELTVADVMTPKEDLKALDLEELENASVG-DVVETLKASGRQHALVVDREHHQIRGIISTSDIAR 125 (126)
T ss_pred chheEHHHhcCchhhhccccHHHhccCcHH-HHHHHHHHCCCceEEEEECCCCEEEEEEeHHHHhh
Confidence 34567999997643333443 578888 99999999999999999864358999999999863
No 129
>smart00116 CBS Domain in cystathionine beta-synthase and other proteins. Domain present in all 3 forms of cellular life. Present in two copies in inosine monophosphate dehydrogenase, of which one is disordered in the crystal structure [3]. A number of disease states are associated with CBS-containing proteins including homocystinuria, Becker's and Thomsen disease.
Probab=97.12 E-value=0.0014 Score=44.16 Aligned_cols=47 Identities=32% Similarity=0.280 Sum_probs=39.7
Q ss_pred ceEEcCCCCHHHHHHHHHhcCCceEEEEEEeCCCCCCCCCCceeeeecHHHHHHHH
Q psy4847 121 CYFVFEDTTLDVLLKQFKEGIKGHMAFVHRVNNEGEGDPFYETVGLITLEDVIEEL 176 (396)
Q Consensus 121 v~~V~~dt~L~~~L~~f~~~~~~h~avV~~~~~~~~~De~g~~vGIVTleDIiEel 176 (396)
++++++++++.+++..|.+. +.+.++|+ ++.++++|+++..|++..+
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~-~~~~~~v~--------~~~~~~~g~i~~~~l~~~~ 48 (49)
T smart00116 2 VVTVSPDTTLEEALELLREH-GIRRLPVV--------DEEGRLVGIVTRRDIIKAL 48 (49)
T ss_pred ceEecCCCcHHHHHHHHHHh-CCCcccEE--------CCCCeEEEEEEHHHHHHhh
Confidence 56789999999999999985 66777777 6668999999999998764
No 130
>cd04623 CBS_pair_10 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=97.12 E-value=0.001 Score=53.98 Aligned_cols=55 Identities=22% Similarity=0.400 Sum_probs=48.8
Q ss_pred ccccccccccCCCEEEEeCCCChhHHHHHHHHHcCCcEEEEEeCCCCcEEEEEEhhhhcc
Q psy4847 42 RKIVGDVMTKLEDVYMLSYDAILDFETVSEIMKSGYSRIPVYEDRRTNIVTMFYIKDLAL 101 (396)
Q Consensus 42 ~~tV~dIMtp~~dv~~l~~d~~l~~e~i~~i~~~g~sriPV~~~~~~~IVGiL~vkDLl~ 101 (396)
..++.++|.+. +.+++.+.++. ++++.+.+.++.++||+++ ++++|+|+.+|++.
T Consensus 58 ~~~~~~~~~~~--~~~v~~~~~~~-~~l~~~~~~~~~~~~Vv~~--~~~~Gvit~~di~~ 112 (113)
T cd04623 58 DTPVSEIMTRN--VITVTPDDTVD-EAMALMTERRFRHLPVVDG--GKLVGIVSIGDVVK 112 (113)
T ss_pred ccCHHHhcCCC--cEEECCCCcHH-HHHHHHHHcCCCEeEEEeC--CEEEEEEEHHHhhc
Confidence 56899999763 78899999999 9999999999999999976 78999999999864
No 131
>cd04625 CBS_pair_12 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=97.12 E-value=0.00096 Score=54.36 Aligned_cols=56 Identities=18% Similarity=0.237 Sum_probs=48.8
Q ss_pred cccccccccccCCCEEEEeCCCChhHHHHHHHHHcCCcEEEEEeCCCCcEEEEEEhhhhcc
Q psy4847 41 RRKIVGDVMTKLEDVYMLSYDAILDFETVSEIMKSGYSRIPVYEDRRTNIVTMFYIKDLAL 101 (396)
Q Consensus 41 ~~~tV~dIMtp~~dv~~l~~d~~l~~e~i~~i~~~g~sriPV~~~~~~~IVGiL~vkDLl~ 101 (396)
.+.++.++|.+. +.+++.++++. ++++.|.+++..++||+++ ++++|+|+.+||+.
T Consensus 56 ~~~~v~~~~~~~--~~~v~~~~~l~-~a~~~m~~~~~~~l~Vv~~--~~~~Gvvt~~dl~~ 111 (112)
T cd04625 56 LDTTVRAIMNPE--PIVASPDDSID-EVRRLMVERHLRYLPVLDG--GTLLGVISFHDVAK 111 (112)
T ss_pred hcCCHHHHhCCC--CeEECCCCCHH-HHHHHHHHcCCCeeeEEEC--CEEEEEEEHHHhhc
Confidence 456799999754 77899999999 9999999999999999974 78999999999864
No 132
>cd04627 CBS_pair_14 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=97.12 E-value=0.001 Score=55.47 Aligned_cols=51 Identities=20% Similarity=0.285 Sum_probs=44.4
Q ss_pred ccccccCCCEEEEeCCCChhHHHHHHHHHcCCcEEEEEeCCCCcEEEEEEhhhhc
Q psy4847 46 GDVMTKLEDVYMLSYDAILDFETVSEIMKSGYSRIPVYEDRRTNIVTMFYIKDLA 100 (396)
Q Consensus 46 ~dIMtp~~dv~~l~~d~~l~~e~i~~i~~~g~sriPV~~~~~~~IVGiL~vkDLl 100 (396)
.++|.+ ++.+++.++++. ++++.|.+++.+++||++++ ++++|+|+..|+.
T Consensus 71 ~~~~~~--~~~~v~~~~~l~-~a~~~m~~~~~~~lpVvd~~-~~~vGiit~~di~ 121 (123)
T cd04627 71 LTIGTS--DVISINGDQPLI-DALHLMHNEGISSVAVVDNQ-GNLIGNISVTDVR 121 (123)
T ss_pred cccCcC--CceEeCCCCCHH-HHHHHHHHcCCceEEEECCC-CcEEEEEeHHHhh
Confidence 356764 478999999999 99999999999999999765 7899999999985
No 133
>PRK05567 inosine 5'-monophosphate dehydrogenase; Reviewed
Probab=97.12 E-value=0.0017 Score=68.53 Aligned_cols=58 Identities=22% Similarity=0.396 Sum_probs=50.9
Q ss_pred ccccccccccCCCEEEEeCCCChhHHHHHHHHHcCCcEEEEEeCCCCcEEEEEEhhhhccc
Q psy4847 42 RKIVGDVMTKLEDVYMLSYDAILDFETVSEIMKSGYSRIPVYEDRRTNIVTMFYIKDLALV 102 (396)
Q Consensus 42 ~~tV~dIMtp~~dv~~l~~d~~l~~e~i~~i~~~g~sriPV~~~~~~~IVGiL~vkDLl~~ 102 (396)
..++.++|++ ..+++++.+.++. ++++.|.++++..+||++++ ++++|+|+.+||+..
T Consensus 146 ~~~V~dim~~-~~~v~v~~~~sl~-eal~~m~~~~~~~lpVVDe~-g~lvGiIT~~DLl~~ 203 (486)
T PRK05567 146 SQPVSEVMTK-ERLVTVPEGTTLE-EALELLHEHRIEKLPVVDDN-GRLKGLITVKDIEKA 203 (486)
T ss_pred CCcHHHHcCC-CCCEEECCCCCHH-HHHHHHHHcCCCEEEEEcCC-CcEEEEEEhHHhhhh
Confidence 4579999984 3478999999999 99999999999999999866 799999999999753
No 134
>cd04613 CBS_pair_SpoIVFB_EriC_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with either the SpoIVFB domain (sporulation protein, stage IV cell wall formation, F locus, promoter-distal B) or the chloride channel protein EriC. SpoIVFB is one of 4 proteins involved in endospore formation; the others are SpoIVFA (sporulation protein, stage IV cell wall formation, F locus, promoter-proximal A), BofA (bypass-of-forespore A ), and SpoIVB (sporulation protein, stage IV cell wall formation, B locus). SpoIVFB is negatively regulated by SpoIVFA and BofA and activated by SpoIVB. It is thought that SpoIVFB, SpoIVFA, and BofA are located in the mother-cell membrane that surrounds the forespore and that SpoIVB is secreted from the forespore into the space between the two where it activates SpoIVFB. EriC is involved in inorganic ion transport and metabolism. CBS is a small domain originally identified in cystathionine beta-synthase a
Probab=97.10 E-value=0.0011 Score=53.93 Aligned_cols=75 Identities=19% Similarity=0.291 Sum_probs=56.7
Q ss_pred CCCCHHHHHHHH-HHhcccccccccccccCCCEEEEeCCCChhHHHHHHHHHcCCcEEEEEeCCCCcEEEEEEhhhhcc
Q psy4847 24 NDLEKDEVNIIS-GALELRRKIVGDVMTKLEDVYMLSYDAILDFETVSEIMKSGYSRIPVYEDRRTNIVTMFYIKDLAL 101 (396)
Q Consensus 24 ~~l~~~E~~~i~-~alel~~~tV~dIMtp~~dv~~l~~d~~l~~e~i~~i~~~g~sriPV~~~~~~~IVGiL~vkDLl~ 101 (396)
|.+...+..... ........++.++|.+. +.++++++++. ++++.|.+.+...+||++++.++++|+++.+|++.
T Consensus 38 G~v~~~~l~~~~~~~~~~~~~~v~~~~~~~--~~~v~~~~~~~-~~~~~~~~~~~~~~~Vv~~~~~~~~Gvvt~~di~~ 113 (114)
T cd04613 38 GIVSLDDIREILFDPSLYDLVVASDIMTKP--PVVVYPEDSLE-DALKKFEDSDYEQLPVVDDDPGKLLGILSRSDLLS 113 (114)
T ss_pred EEEEHHHHHHHHhcccccccEEHHHhccCC--CcEEcCCCCHH-HHHHHHhhCCccEeeEEeCCCCEEEEEEEhHHhhc
Confidence 446666654321 11122347899999865 78899999999 99999999999999999762378999999999864
No 135
>cd04600 CBS_pair_HPP_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the HPP motif domain. These proteins are integral membrane proteins with four transmembrane spanning helices. The function of these proteins is uncertain, but they are thought to be transporters. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=97.10 E-value=0.00099 Score=55.32 Aligned_cols=57 Identities=25% Similarity=0.402 Sum_probs=49.7
Q ss_pred cccccccccccCCCEEEEeCCCChhHHHHHHHHHcCCcEEEEEeCCCCcEEEEEEhhhhcc
Q psy4847 41 RRKIVGDVMTKLEDVYMLSYDAILDFETVSEIMKSGYSRIPVYEDRRTNIVTMFYIKDLAL 101 (396)
Q Consensus 41 ~~~tV~dIMtp~~dv~~l~~d~~l~~e~i~~i~~~g~sriPV~~~~~~~IVGiL~vkDLl~ 101 (396)
...+++++|.+. +.+++.++++. ++++.|.+.+..++||++++ ++++|+++.+|++.
T Consensus 67 ~~~~i~~~~~~~--~~~~~~~~~l~-~~~~~~~~~~~~~~~Vv~~~-g~~~Gvit~~di~~ 123 (124)
T cd04600 67 KPETVGDIMSPP--VVTVRPDTPIA-ELVPLLADGGHHHVPVVDED-RRLVGIVTQTDLIA 123 (124)
T ss_pred ccccHHHhccCC--CeeeCCCCcHH-HHHHHHHhcCCCceeEEcCC-CCEEEEEEhHHhhc
Confidence 345799999754 78999999999 99999999999999999754 78999999999864
No 136
>cd04626 CBS_pair_13 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=97.08 E-value=0.0013 Score=53.51 Aligned_cols=73 Identities=16% Similarity=0.283 Sum_probs=55.5
Q ss_pred cCCCCHHHHHHHHHHhcccccccccccccCCCEEEEeCCCChhHHHHHHHHHcCCcEEEEEeCCCCcEEEEEEhhhhc
Q psy4847 23 FNDLEKDEVNIISGALELRRKIVGDVMTKLEDVYMLSYDAILDFETVSEIMKSGYSRIPVYEDRRTNIVTMFYIKDLA 100 (396)
Q Consensus 23 ~~~l~~~E~~~i~~alel~~~tV~dIMtp~~dv~~l~~d~~l~~e~i~~i~~~g~sriPV~~~~~~~IVGiL~vkDLl 100 (396)
.|.++..+.......-...+.++.++|.+ .+..+..++++. ++++.|.+++..++||+++ ++++|+|+..|++
T Consensus 37 ~G~v~~~dl~~~~~~~~~~~~~v~~~~~~--~~~~v~~~~~l~-~~~~~~~~~~~~~~~Vv~~--~~~~G~it~~di~ 109 (111)
T cd04626 37 KGVVTFTDILDLDLFESFLEKKVFNIVSQ--DVFYVNEEDTID-EALDIMREKQIGRLPVVDD--NKLIGVVRTKDIL 109 (111)
T ss_pred EEEEehHHhHHHHhhcccccCcHHHHhcC--CcEEEcCCCcHH-HHHHHHHHcCCCeeeEeEC--CEEEEEEEhHHhc
Confidence 34466665443222111235679999975 378899999999 9999999999999999976 7899999999986
No 137
>cd04596 CBS_pair_DRTGG_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with a DRTGG domain upstream. The function of the DRTGG domain, named after its conserved residues, is unknown. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=97.08 E-value=0.0011 Score=53.99 Aligned_cols=57 Identities=16% Similarity=0.246 Sum_probs=50.0
Q ss_pred cccccccccccCCCEEEEeCCCChhHHHHHHHHHcCCcEEEEEeCCCCcEEEEEEhhhhcc
Q psy4847 41 RRKIVGDVMTKLEDVYMLSYDAILDFETVSEIMKSGYSRIPVYEDRRTNIVTMFYIKDLAL 101 (396)
Q Consensus 41 ~~~tV~dIMtp~~dv~~l~~d~~l~~e~i~~i~~~g~sriPV~~~~~~~IVGiL~vkDLl~ 101 (396)
.+.++.++|.+. +.+++.+.++. ++++.+.+++...+||++++ ++++|+++.+|++.
T Consensus 51 ~~~~v~~~~~~~--~~~v~~~~~l~-~~~~~~~~~~~~~~~Vv~~~-~~~~G~it~~di~~ 107 (108)
T cd04596 51 PDTTIEKVMTKN--PITVNPKTSVA-SVAHMMIWEGIEMLPVVDDN-KKLLGIISRQDVLK 107 (108)
T ss_pred ccccHHHHhcCC--CeEECCCCCHH-HHHHHHHHcCCCeeeEEcCC-CCEEEEEEHHHhhc
Confidence 466899999754 78899999999 99999999999999999765 78999999999864
No 138
>cd04615 CBS_pair_2 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera
Probab=97.04 E-value=0.0013 Score=53.70 Aligned_cols=74 Identities=18% Similarity=0.256 Sum_probs=56.8
Q ss_pred cCCCCHHHHHH--HHHHhcccccccccccccCCCEEEEeCCCChhHHHHHHHHHcCCcEEEEEeCCCCcEEEEEEhhhhc
Q psy4847 23 FNDLEKDEVNI--ISGALELRRKIVGDVMTKLEDVYMLSYDAILDFETVSEIMKSGYSRIPVYEDRRTNIVTMFYIKDLA 100 (396)
Q Consensus 23 ~~~l~~~E~~~--i~~alel~~~tV~dIMtp~~dv~~l~~d~~l~~e~i~~i~~~g~sriPV~~~~~~~IVGiL~vkDLl 100 (396)
.|-++..+... +.+. .+.+.++.++|.+. +.+++.++++. ++++.+.+++..++||++++ ++++|+++..||+
T Consensus 37 ~G~v~~~dl~~~~~~~~-~~~~~~i~~~~~~~--~~~v~~~~~l~-~~~~~~~~~~~~~~~Vvd~~-g~~~Gvvt~~dl~ 111 (113)
T cd04615 37 VGIITRYDVLSYALESE-ELKDAKVREVMNSP--VITIDANDSIA-KARWLMSNNNISRLPVLDDK-GKVGGIVTEDDIL 111 (113)
T ss_pred EEEEEHHHHHHhhhhhh-hhcCCcHHHhccCC--ceEECCCCcHH-HHHHHHHHcCCCeeeEECCC-CeEEEEEEHHHhh
Confidence 44456666532 2221 24567899999754 78899999999 99999999999999999765 7999999999986
Q ss_pred c
Q psy4847 101 L 101 (396)
Q Consensus 101 ~ 101 (396)
.
T Consensus 112 ~ 112 (113)
T cd04615 112 R 112 (113)
T ss_pred c
Confidence 3
No 139
>cd04621 CBS_pair_8 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera
Probab=97.04 E-value=0.0013 Score=56.67 Aligned_cols=55 Identities=20% Similarity=0.326 Sum_probs=48.8
Q ss_pred ccccccccccCCCEEEEeCCCChhHHHHHHHHHcCCcEEEEEeCCCCcEEEEEEhhhhcc
Q psy4847 42 RKIVGDVMTKLEDVYMLSYDAILDFETVSEIMKSGYSRIPVYEDRRTNIVTMFYIKDLAL 101 (396)
Q Consensus 42 ~~tV~dIMtp~~dv~~l~~d~~l~~e~i~~i~~~g~sriPV~~~~~~~IVGiL~vkDLl~ 101 (396)
+.+|+++|++. +.++++++++. ++++.|.+.++.++||+++ ++++|+|+..|++.
T Consensus 80 ~~~v~~~~~~~--~~~v~~~~~l~-~~~~~~~~~~~~~l~Vv~~--~~~~Gvit~~di~~ 134 (135)
T cd04621 80 PLVAEDIMTEE--IITVSPNDDVV-DAAKLMLEANISGLPVVDN--DNIVGVITKTDICR 134 (135)
T ss_pred cccHHHhcCCC--CeEECCCCCHH-HHHHHHHHcCCCEEEEEeC--CEEEEEEEHHHHhh
Confidence 56899999864 67899999999 9999999999999999975 78999999999864
No 140
>cd04597 CBS_pair_DRTGG_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with a DRTGG domain upstream. The function of the DRTGG domain, named after its conserved residues, is unknown. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=97.03 E-value=0.0016 Score=54.42 Aligned_cols=53 Identities=21% Similarity=0.104 Sum_probs=43.1
Q ss_pred hhhhhcCCceEEcCCCCHHHHHHHHHhcCCceEEEEEEeCCCCCCCCCCceeeeecHHHHHH
Q psy4847 113 LCQFYQNSCYFVFEDTTLDVLLKQFKEGIKGHMAFVHRVNNEGEGDPFYETVGLITLEDVIE 174 (396)
Q Consensus 113 v~~~~~~~v~~V~~dt~L~~~L~~f~~~~~~h~avV~~~~~~~~~De~g~~vGIVTleDIiE 174 (396)
+.++|.+++.++.+++++.++++.|.+. +.+.++|+ |+.|+++|+||..||.+
T Consensus 60 v~dim~~~~~~v~~~~~l~~a~~~~~~~-~~~~lpVv--------d~~~~l~Givt~~dl~~ 112 (113)
T cd04597 60 VRDVINRKPVTARPNDPLREALNLMHEH-NIRTLPVV--------DDDGTPAGIITLLDLAE 112 (113)
T ss_pred HHHhcCCCCCEECCcCcHHHHHHHHHHc-CCCEEEEE--------CCCCeEEEEEEHHHhhc
Confidence 3334457888999999999999999985 56667777 77789999999999864
No 141
>cd04636 CBS_pair_23 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=97.03 E-value=0.0013 Score=55.78 Aligned_cols=53 Identities=25% Similarity=0.394 Sum_probs=47.5
Q ss_pred ccccccccCCCEEEEeCCCChhHHHHHHHHHcCCcEEEEEeCCCCcEEEEEEhhhhcc
Q psy4847 44 IVGDVMTKLEDVYMLSYDAILDFETVSEIMKSGYSRIPVYEDRRTNIVTMFYIKDLAL 101 (396)
Q Consensus 44 tV~dIMtp~~dv~~l~~d~~l~~e~i~~i~~~g~sriPV~~~~~~~IVGiL~vkDLl~ 101 (396)
++.++|.+. +..++.++++. +++..|.+.+..++||+++ ++++|+++.+|++.
T Consensus 79 ~v~~~~~~~--~~~v~~~~~l~-~~~~~~~~~~~~~~~V~~~--~~~iGvit~~dl~~ 131 (132)
T cd04636 79 KVEEIMTKK--VITVDEDTTIE-DVARIMSKKNIKRLPVVDD--GKLVGIISRGDIIR 131 (132)
T ss_pred CHHHhccCC--ceEECCCCcHH-HHHHHHHHCCCCeeEEEEC--CEEEEEEEHHHhhc
Confidence 789999753 78899999999 9999999999999999976 79999999999864
No 142
>cd04620 CBS_pair_7 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera
Probab=97.02 E-value=0.0015 Score=53.60 Aligned_cols=75 Identities=15% Similarity=0.236 Sum_probs=54.4
Q ss_pred cCCCCHHHHHHHH-HHhcccccccccccccCCCEEEEeCC--CChhHHHHHHHHHcCCcEEEEEeCCCCcEEEEEEhhhh
Q psy4847 23 FNDLEKDEVNIIS-GALELRRKIVGDVMTKLEDVYMLSYD--AILDFETVSEIMKSGYSRIPVYEDRRTNIVTMFYIKDL 99 (396)
Q Consensus 23 ~~~l~~~E~~~i~-~alel~~~tV~dIMtp~~dv~~l~~d--~~l~~e~i~~i~~~g~sriPV~~~~~~~IVGiL~vkDL 99 (396)
.|.+...+..... .-....+.++.++|.+. +.+++++ +++. ++++.|.+++..++||++++ ++++|+|+.+|+
T Consensus 37 ~G~v~~~dl~~~~~~~~~~~~~~i~~~~~~~--~~~v~~~~~~~l~-~a~~~~~~~~~~~~pVvd~~-~~~~Gvit~~dl 112 (115)
T cd04620 37 LGIFTERDIVRLTAIGKDLSDLPIGEVMTQP--VVTLQESEIQDIF-TALSLFRQHQIRHLPVLDDQ-GQLIGLVTAESI 112 (115)
T ss_pred EEEEeHHHHHHHHhcCCCccccCHHHhcCCC--cEEEecccccCHH-HHHHHHHHhCCceEEEEcCC-CCEEEEEEhHHh
Confidence 3446655543211 11122346799999753 6778876 6777 89999999999999999765 789999999998
Q ss_pred cc
Q psy4847 100 AL 101 (396)
Q Consensus 100 l~ 101 (396)
+.
T Consensus 113 ~~ 114 (115)
T cd04620 113 RQ 114 (115)
T ss_pred hc
Confidence 74
No 143
>PRK14869 putative manganese-dependent inorganic pyrophosphatase; Provisional
Probab=97.01 E-value=0.00028 Score=75.14 Aligned_cols=58 Identities=26% Similarity=0.355 Sum_probs=51.5
Q ss_pred cccccccccccCCCEEEEeCCCChhHHHHHHHHHcCCcEEEEEeCCCCcEEEEEEhhhhcc
Q psy4847 41 RRKIVGDVMTKLEDVYMLSYDAILDFETVSEIMKSGYSRIPVYEDRRTNIVTMFYIKDLAL 101 (396)
Q Consensus 41 ~~~tV~dIMtp~~dv~~l~~d~~l~~e~i~~i~~~g~sriPV~~~~~~~IVGiL~vkDLl~ 101 (396)
...+|+++|+. .++.+++.++++. ++.+.|.++++..+||++++ |+++|+|+.+||+.
T Consensus 244 ~~~~V~~iM~~-~~~~~~~~~~~~~-~~~~~m~~~~~~~~PVvd~~-g~lvGiit~~dl~~ 301 (546)
T PRK14869 244 QSIPVSYIMTT-EDLVTFSKDDYLE-DVKEVMLKSRYRSYPVVDED-GKVVGVISRYHLLS 301 (546)
T ss_pred cCCCHHHhccC-CCcEEECCCCcHH-HHHHHHHhcCCCceEEEcCC-CCEEEEEEHHHhhc
Confidence 36789999983 3488999999999 99999999999999999865 89999999999975
No 144
>cd04631 CBS_pair_18 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=96.99 E-value=0.0013 Score=54.60 Aligned_cols=56 Identities=20% Similarity=0.335 Sum_probs=49.2
Q ss_pred ccccccccccCCCEEEEeCCCChhHHHHHHHHHcCCcEEEEEeCCCCcEEEEEEhhhhcc
Q psy4847 42 RKIVGDVMTKLEDVYMLSYDAILDFETVSEIMKSGYSRIPVYEDRRTNIVTMFYIKDLAL 101 (396)
Q Consensus 42 ~~tV~dIMtp~~dv~~l~~d~~l~~e~i~~i~~~g~sriPV~~~~~~~IVGiL~vkDLl~ 101 (396)
..++.++|.+. +.+++.++++. ++++.+.+.+...+||.+++ ++++|+|+.+|++.
T Consensus 69 ~~~~~~~~~~~--~~~v~~~~~l~-~~~~~~~~~~~~~~~V~~~~-~~~~Gvit~~di~~ 124 (125)
T cd04631 69 NEPVRSIMTRN--VITITPDDSIK-DAAELMLEKRVGGLPVVDDD-GKLVGIVTERDLLK 124 (125)
T ss_pred hcCHHHHhcCC--ceEeCCCCcHH-HHHHHHHHcCCceEEEEcCC-CcEEEEEEHHHhhc
Confidence 45789999754 88999999999 99999999999999999765 78999999999874
No 145
>PRK10892 D-arabinose 5-phosphate isomerase; Provisional
Probab=96.98 E-value=0.0013 Score=65.43 Aligned_cols=74 Identities=12% Similarity=0.181 Sum_probs=57.5
Q ss_pred CCCCHHHHHHHH-HHhcccccccccccccCCCEEEEeCCCChhHHHHHHHHHcCCcEEEEEeCCCCcEEEEEEhhhhccc
Q psy4847 24 NDLEKDEVNIIS-GALELRRKIVGDVMTKLEDVYMLSYDAILDFETVSEIMKSGYSRIPVYEDRRTNIVTMFYIKDLALV 102 (396)
Q Consensus 24 ~~l~~~E~~~i~-~alel~~~tV~dIMtp~~dv~~l~~d~~l~~e~i~~i~~~g~sriPV~~~~~~~IVGiL~vkDLl~~ 102 (396)
|.++..+...+. .-..+.+.+|+++|++. +.++.+++++. ++++.|.+++..++||+++ ++++|+|+..|++..
T Consensus 249 Givt~~Dl~~~~~~~~~~~~~~v~~im~~~--~~~v~~~~~l~-~a~~~m~~~~~~~lpVv~~--~~lvGiit~~dil~~ 323 (326)
T PRK10892 249 GIFTDGDLRRVFDMGIDLRQASIADVMTPG--GIRVRPGILAV-DALNLMQSRHITSVLVADG--DHLLGVLHMHDLLRA 323 (326)
T ss_pred EEEecHHHHHHHhcCCCcccCCHHHhcCCC--CEEECCCCCHH-HHHHHHHHCCCcEEEEeeC--CEEEEEEEhHHhHhc
Confidence 456665643211 11134567899999864 78999999999 9999999999999999974 689999999999754
No 146
>cd04599 CBS_pair_GGDEF_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with the GGDEF (DiGuanylate-Cyclase (DGC)) domain. The GGDEF domain has been suggested to be homologous to the adenylyl cyclase catalytic domain and is thought to be involved in regulating cell surface adhesiveness in bacteria. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=96.96 E-value=0.0017 Score=52.13 Aligned_cols=56 Identities=27% Similarity=0.369 Sum_probs=49.2
Q ss_pred cccccccccccCCCEEEEeCCCChhHHHHHHHHHcCCcEEEEEeCCCCcEEEEEEhhhhcc
Q psy4847 41 RRKIVGDVMTKLEDVYMLSYDAILDFETVSEIMKSGYSRIPVYEDRRTNIVTMFYIKDLAL 101 (396)
Q Consensus 41 ~~~tV~dIMtp~~dv~~l~~d~~l~~e~i~~i~~~g~sriPV~~~~~~~IVGiL~vkDLl~ 101 (396)
.+.++.++|.+. +.+++.++++. ++++.|.+++...+||+++ ++++|+|+.+|+++
T Consensus 49 ~~~~~~~~~~~~--~~~v~~~~~l~-~~~~~~~~~~~~~~~Vv~~--~~~~G~it~~~l~~ 104 (105)
T cd04599 49 PNRLVADAMTRE--VVTISPEASLL-EAKRLMEEKKIERLPVLRE--RKLVGIITKGTIAL 104 (105)
T ss_pred ccCCHHHHccCC--CEEECCCCCHH-HHHHHHHHcCCCEeeEEEC--CEEEEEEEHHHhcc
Confidence 346799999754 78999999999 9999999999999999975 79999999999863
No 147
>cd04630 CBS_pair_17 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=96.96 E-value=0.0017 Score=53.35 Aligned_cols=57 Identities=23% Similarity=0.316 Sum_probs=49.6
Q ss_pred ccccccccccccCCCEEEEeCCCChhHHHHHHHHHcCCcEEEEEeCCCCcEEEEEEhhhhcc
Q psy4847 40 LRRKIVGDVMTKLEDVYMLSYDAILDFETVSEIMKSGYSRIPVYEDRRTNIVTMFYIKDLAL 101 (396)
Q Consensus 40 l~~~tV~dIMtp~~dv~~l~~d~~l~~e~i~~i~~~g~sriPV~~~~~~~IVGiL~vkDLl~ 101 (396)
..+.++.++|.+ ++.+++.++++. ++++.|.+.+...+||+++ ++++|+|+..|++.
T Consensus 57 ~~~~~v~~~~~~--~~~~v~~~~~l~-~~~~~~~~~~~~~~~Vvd~--~~~~Gvi~~~dl~~ 113 (114)
T cd04630 57 PDRVNVYEIMTK--PLISVSPDMDIK-YCARLMERTNIRRAPVVEN--NELIGIISLTDIFL 113 (114)
T ss_pred CCccCHHHHhcC--CCeeECCCCCHH-HHHHHHHHcCCCEeeEeeC--CEEEEEEEHHHhhc
Confidence 345679999964 478999999999 9999999999999999976 78999999999864
No 148
>cd04601 CBS_pair_IMPDH This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the inosine 5' monophosphate dehydrogenase (IMPDH) protein. IMPDH is an essential enzyme that catalyzes the first step unique to GTP synthesis, playing a key role in the regulation of cell proliferation and differentiation. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain in IMPDH have been associated with retinitis pigmentosa.
Probab=96.95 E-value=0.0018 Score=52.31 Aligned_cols=56 Identities=21% Similarity=0.357 Sum_probs=46.7
Q ss_pred ccccccccccCCCEEEEeC-CCChhHHHHHHHHHcCCcEEEEEeCCCCcEEEEEEhhhhcc
Q psy4847 42 RKIVGDVMTKLEDVYMLSY-DAILDFETVSEIMKSGYSRIPVYEDRRTNIVTMFYIKDLAL 101 (396)
Q Consensus 42 ~~tV~dIMtp~~dv~~l~~-d~~l~~e~i~~i~~~g~sriPV~~~~~~~IVGiL~vkDLl~ 101 (396)
+.++.++|.+. +..+.. ++++. ++++.|.+.++.++||++++ ++++|+|+.+|++.
T Consensus 53 ~~~v~~~~~~~--~~~~~~~~~~l~-~~~~~~~~~~~~~~~Vv~~~-~~~~Gvi~~~dil~ 109 (110)
T cd04601 53 DKPVSEVMTPE--NLLTTVEGTSLE-EALELLHEHKIEKLPVVDDE-GKLKGLITVKDIEK 109 (110)
T ss_pred CCCHHHhcccC--ceEEecCCCCHH-HHHHHHHHhCCCeeeEEcCC-CCEEEEEEhhhhhc
Confidence 46899999654 345556 89998 99999999999999999765 78999999999863
No 149
>COG2524 Predicted transcriptional regulator, contains C-terminal CBS domains [Transcription]
Probab=96.94 E-value=0.0023 Score=61.48 Aligned_cols=59 Identities=31% Similarity=0.279 Sum_probs=51.1
Q ss_pred chhhhhhhhcCCceEEcCCCCHHHHHHHHHhcCCceEEEEEEeCCCCCCCCCCceeeeecHHHHHHHHHhcc
Q psy4847 109 PLKTLCQFYQNSCYFVFEDTTLDVLLKQFKEGIKGHMAFVHRVNNEGEGDPFYETVGLITLEDVIEELIQAE 180 (396)
Q Consensus 109 ~l~~v~~~~~~~v~~V~~dt~L~~~L~~f~~~~~~h~avV~~~~~~~~~De~g~~vGIVTleDIiEeli~~e 180 (396)
+++.+| .+++.++.+++++.++.+.|-+. ..+=|+|+ |. ++++||+|+.||.++|.+|.
T Consensus 173 ~V~~~~---s~~~i~v~~d~tl~eaak~f~~~-~i~GaPVv--------d~-dk~vGiit~~dI~~aia~g~ 231 (294)
T COG2524 173 KVKNLM---SKKLITVRPDDTLREAAKLFYEK-GIRGAPVV--------DD-DKIVGIITLSDIAKAIANGN 231 (294)
T ss_pred hhhhhc---cCCceEecCCccHHHHHHHHHHc-CccCCcee--------cC-CceEEEEEHHHHHHHHHcCC
Confidence 445554 58999999999999999999994 89999998 54 59999999999999999763
No 150
>cd04622 CBS_pair_9 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera
Probab=96.94 E-value=0.0018 Score=52.65 Aligned_cols=75 Identities=24% Similarity=0.339 Sum_probs=55.6
Q ss_pred cCCCCHHHHH--HHHHHhcccccccccccccCCCEEEEeCCCChhHHHHHHHHHcCCcEEEEEeCCCCcEEEEEEhhhhc
Q psy4847 23 FNDLEKDEVN--IISGALELRRKIVGDVMTKLEDVYMLSYDAILDFETVSEIMKSGYSRIPVYEDRRTNIVTMFYIKDLA 100 (396)
Q Consensus 23 ~~~l~~~E~~--~i~~alel~~~tV~dIMtp~~dv~~l~~d~~l~~e~i~~i~~~g~sriPV~~~~~~~IVGiL~vkDLl 100 (396)
.|.++..+.. .+..-......++.++|.+. +..++.++++. ++++.+.+.+..++||++++ ++++|+|+.+|++
T Consensus 36 ~G~i~~~~l~~~~~~~~~~~~~~~~~~~~~~~--~~~v~~~~~~~-~~~~~~~~~~~~~~~V~~~~-~~~~G~it~~di~ 111 (113)
T cd04622 36 VGIVTDRDIVVRAVAEGRDPDTTTVGDVMTRG--VVTVTEDDDVD-EAARLMREHQVRRLPVVDDD-GRLVGIVSLGDLA 111 (113)
T ss_pred EEEEEhHHHHHHHhhccCCcccCCHHHhccCC--ccEECCCCCHH-HHHHHHHHcCCCeeeEECCC-CcEEEEEEHHHhh
Confidence 3445655532 22222233344599999754 77899999999 99999999999999999764 7899999999986
Q ss_pred c
Q psy4847 101 L 101 (396)
Q Consensus 101 ~ 101 (396)
.
T Consensus 112 ~ 112 (113)
T cd04622 112 R 112 (113)
T ss_pred c
Confidence 4
No 151
>cd04584 CBS_pair_ACT_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the acetoin utilization proteins in bacteria. Acetoin is a product of fermentative metabolism in many prokaryotic and eukaryotic microorganisms. They produce acetoin as an external carbon storage compound and then later reuse it as a carbon and energy source during their stationary phase and sporulation. In addition these CBS domains are associated with a downstream ACT domain, which is linked to a wide range of metabolic enzymes that are regulated by amino acid concentration. Pairs of ACT domains bind specifically to a particular amino acid leading to regulation of the linked enzyme. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The in
Probab=96.91 E-value=0.0018 Score=53.35 Aligned_cols=57 Identities=25% Similarity=0.248 Sum_probs=50.1
Q ss_pred ccccccccccccCCCEEEEeCCCChhHHHHHHHHHcCCcEEEEEeCCCCcEEEEEEhhhhcc
Q psy4847 40 LRRKIVGDVMTKLEDVYMLSYDAILDFETVSEIMKSGYSRIPVYEDRRTNIVTMFYIKDLAL 101 (396)
Q Consensus 40 l~~~tV~dIMtp~~dv~~l~~d~~l~~e~i~~i~~~g~sriPV~~~~~~~IVGiL~vkDLl~ 101 (396)
....++.++|.+. +.+++.++++. ++++.+.+.+++.+||+++ ++++|+|+.+|++.
T Consensus 64 ~~~~~v~~~~~~~--~~~i~~~~~l~-~~~~~~~~~~~~~~~V~~~--~~~~Gvv~~~di~~ 120 (121)
T cd04584 64 LLKMPVKEIMTKD--VITVHPLDTVE-EAALLMREHRIGCLPVVED--GRLVGIITETDLLR 120 (121)
T ss_pred hcCcCHHHHhhCC--CeEECCCCcHH-HHHHHHHHcCCCeEEEeeC--CEEEEEEEHHHhhc
Confidence 4567899999864 78999999999 9999999999999999975 78999999999864
No 152
>KOG0475|consensus
Probab=96.90 E-value=0.0044 Score=65.92 Aligned_cols=119 Identities=19% Similarity=0.282 Sum_probs=85.0
Q ss_pred ccccccccCC---CEEEEeCC-CChhHHHHHHHHHcCCcEEEEE-eCCCCcEEEEEEhhhhccc----------------
Q psy4847 44 IVGDVMTKLE---DVYMLSYD-AILDFETVSEIMKSGYSRIPVY-EDRRTNIVTMFYIKDLALV---------------- 102 (396)
Q Consensus 44 tV~dIMtp~~---dv~~l~~d-~~l~~e~i~~i~~~g~sriPV~-~~~~~~IVGiL~vkDLl~~---------------- 102 (396)
-..++|.|.. ....++.+ .+++ +....|.++.|+.+||+ +++....+|++..+||...
T Consensus 544 ~~~~v~~p~~~~~~L~~i~~~s~tl~-~le~~~~~t~~sgfpvvl~~~sq~lvGfv~rr~l~~~i~~ar~~q~~~~~~~~ 622 (696)
T KOG0475|consen 544 LAIPVMEPCRSESCLIVITQDSMTLE-DLESLMEDTDFSGFPVVLSEDSQRLVGFVLRRNLFLAILNARKIQSFIVTTSI 622 (696)
T ss_pred hhhhhhchhcCchhheeccccceeHH-HHHHHHhhcccCCceEEEccccceeEEEEchHHHHHHHhhhccccccceeccc
Confidence 3445555443 24555554 7888 88888899999999988 4566789999999998420
Q ss_pred ---CCc--------cccchhhhhhhhcCCceEEcCCCCHHHHHHHHHhcCCceEEEEEEeCCCCCCCCCCceeeeecHHH
Q psy4847 103 ---DPD--------DNTPLKTLCQFYQNSCYFVFEDTTLDVLLKQFKEGIKGHMAFVHRVNNEGEGDPFYETVGLITLED 171 (396)
Q Consensus 103 ---~~~--------~~~~l~~v~~~~~~~v~~V~~dt~L~~~L~~f~~~~~~h~avV~~~~~~~~~De~g~~vGIVTleD 171 (396)
++. ....++++++ -.+.+|...+|...+++.|++- ...-..| +.+|++.|+||..|
T Consensus 623 ~f~~~~~~~~~~~~~~~~lk~il~---~tp~tv~d~tp~~~v~~~F~~l-g~~~~~v---------~~~G~l~Giitkkd 689 (696)
T KOG0475|consen 623 YFNDPSPSAVAGIPSRLDLKDILD---MTPFTVTDLTPMETVVDLFRKL-GLRQILV---------TKNGILLGIITKKD 689 (696)
T ss_pred ccCCCCccccCCCCCCcCceeecc---CCcccccccCcHHHHHHHHHhh-CceEEEE---------ccCCeeEeeeehHH
Confidence 110 0122344443 4567899999999999999984 5555556 57899999999999
Q ss_pred HHHHH
Q psy4847 172 VIEEL 176 (396)
Q Consensus 172 IiEel 176 (396)
++...
T Consensus 690 ~l~~~ 694 (696)
T KOG0475|consen 690 CLRHT 694 (696)
T ss_pred HHHhh
Confidence 98653
No 153
>cd04803 CBS_pair_15 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=96.89 E-value=0.0021 Score=53.10 Aligned_cols=57 Identities=25% Similarity=0.370 Sum_probs=49.4
Q ss_pred cccccccccccCCCEEEEeCCCChhHHHHHHHHHcCCcEEEEEeCCCCcEEEEEEhhhhcc
Q psy4847 41 RRKIVGDVMTKLEDVYMLSYDAILDFETVSEIMKSGYSRIPVYEDRRTNIVTMFYIKDLAL 101 (396)
Q Consensus 41 ~~~tV~dIMtp~~dv~~l~~d~~l~~e~i~~i~~~g~sriPV~~~~~~~IVGiL~vkDLl~ 101 (396)
...++.++|.. ++.+++.++++. ++++.+.+.+...+||++++ ++++|+++.+||+.
T Consensus 65 ~~~~v~~~~~~--~~~~v~~~~~~~-~~~~~~~~~~~~~~~Vv~~~-~~~~Gvit~~dl~~ 121 (122)
T cd04803 65 RDVPVAEVMKT--DVLTVTPDTPLR-EAAEIMVENKIGCLPVVDDK-GTLVGIITRSDFLR 121 (122)
T ss_pred cCcCHHHhhCC--CCeEeCCCCcHH-HHHHHHHHcCCCeEEEEcCC-CCEEEEEEHHHhhc
Confidence 46678999964 478899999999 99999999999999999765 68999999999874
No 154
>PLN02274 inosine-5'-monophosphate dehydrogenase
Probab=96.88 E-value=0.0015 Score=69.25 Aligned_cols=73 Identities=18% Similarity=0.268 Sum_probs=59.6
Q ss_pred CCCCHHHHHHHHHHhcccccccccccccCCCEEEEeCCCChhHHHHHHHHHcCCcEEEEEeCCCCcEEEEEEhhhhccc
Q psy4847 24 NDLEKDEVNIISGALELRRKIVGDVMTKLEDVYMLSYDAILDFETVSEIMKSGYSRIPVYEDRRTNIVTMFYIKDLALV 102 (396)
Q Consensus 24 ~~l~~~E~~~i~~alel~~~tV~dIMtp~~dv~~l~~d~~l~~e~i~~i~~~g~sriPV~~~~~~~IVGiL~vkDLl~~ 102 (396)
|.++..+...+. -.+.+|.++|++...+.++++++++. ++++.|.+++..++||++++ ++++|+|+.+||+..
T Consensus 148 GIVT~~DL~~v~----~~~~~V~eIMt~~~~lvtv~~~~sL~-eAl~~m~~~~~~~LPVVD~~-g~LvGvITr~DIlk~ 220 (505)
T PLN02274 148 GYVTKRDWDFVN----DRETKLSEVMTSDDDLVTAPAGIDLE-EAEAVLKDSKKGKLPLVNED-GELVDLVTRTDVKRV 220 (505)
T ss_pred EEEEHHHHhhcc----ccCCcHHHHhccCCCcEEECCCCCHH-HHHHHHHHcCCCEEEEEcCC-CeEEEEEEHHHHHHH
Confidence 345555554332 34678999999876688999999999 99999999999999999765 789999999999753
No 155
>cd04589 CBS_pair_CAP-ED_DUF294_assoc_bac This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the bacterial CAP_ED (cAMP receptor protein effector domain) family of transcription factors and the DUF294 domain. Members of CAP_ED, include CAP which binds cAMP, FNR (fumarate and nitrate reductase) which uses an iron-sulfur cluster to sense oxygen, and CooA a heme containing CO sensor. In all cases binding of the effector leads to conformational changes and the ability to activate transcription. DUF294 is a putative nucleotidyltransferase with a conserved DxD motif. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or
Probab=96.88 E-value=0.0023 Score=52.08 Aligned_cols=56 Identities=20% Similarity=0.223 Sum_probs=48.9
Q ss_pred cccccccccccCCCEEEEeCCCChhHHHHHHHHHcCCcEEEEEeCCCCcEEEEEEhhhhcc
Q psy4847 41 RRKIVGDVMTKLEDVYMLSYDAILDFETVSEIMKSGYSRIPVYEDRRTNIVTMFYIKDLAL 101 (396)
Q Consensus 41 ~~~tV~dIMtp~~dv~~l~~d~~l~~e~i~~i~~~g~sriPV~~~~~~~IVGiL~vkDLl~ 101 (396)
.+.+++++|.+ ++..++.++++. ++++.|.+++..++||+++ ++++|+|+.+|++.
T Consensus 55 ~~~~i~~~~~~--~~~~v~~~~~l~-~~~~~~~~~~~~~~~Vv~~--~~~~G~it~~dl~~ 110 (111)
T cd04589 55 SSTPVGEIATF--PLITVDPDDFLF-NALLLMTRHRIHRVVVREG--GEVVGVLEQTDLLS 110 (111)
T ss_pred CCCCHHHHhCC--CcEEECCCCcHH-HHHHHHHHhCccEEEEeeC--CEEEEEEEhHHhhc
Confidence 35679999975 478899999998 9999999999999999975 78999999999864
No 156
>cd04633 CBS_pair_20 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=96.86 E-value=0.0017 Score=53.62 Aligned_cols=57 Identities=23% Similarity=0.395 Sum_probs=49.7
Q ss_pred ccccccccccccCCCEEEEeCCCChhHHHHHHHHHcCCcEEEEEeCCCCcEEEEEEhhhhcc
Q psy4847 40 LRRKIVGDVMTKLEDVYMLSYDAILDFETVSEIMKSGYSRIPVYEDRRTNIVTMFYIKDLAL 101 (396)
Q Consensus 40 l~~~tV~dIMtp~~dv~~l~~d~~l~~e~i~~i~~~g~sriPV~~~~~~~IVGiL~vkDLl~ 101 (396)
+...++.++|.+ +..+++.++++. +++..+.+.+.+.+||+++ ++++|+|+.+|++.
T Consensus 64 ~~~~~~~~~~~~--~~~~v~~~~~l~-~~~~~~~~~~~~~~~Vv~~--~~~~Gvi~~~dl~~ 120 (121)
T cd04633 64 IRNLPVSDIMTR--PVITIEPDTSVS-DVASLMLENNIGGLPVVDD--GKLVGIVTRTDILR 120 (121)
T ss_pred hhccCHHHHccC--CceEECCCCcHH-HHHHHHHHcCCCcccEEEC--CEEEEEEEHHHhhc
Confidence 346689999975 378899999999 9999999999999999976 78999999999864
No 157
>cd04635 CBS_pair_22 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=96.85 E-value=0.0021 Score=53.19 Aligned_cols=57 Identities=19% Similarity=0.367 Sum_probs=49.4
Q ss_pred cccccccccccCCCEEEEeCCCChhHHHHHHHHHcCCcEEEEEeCCCCcEEEEEEhhhhcc
Q psy4847 41 RRKIVGDVMTKLEDVYMLSYDAILDFETVSEIMKSGYSRIPVYEDRRTNIVTMFYIKDLAL 101 (396)
Q Consensus 41 ~~~tV~dIMtp~~dv~~l~~d~~l~~e~i~~i~~~g~sriPV~~~~~~~IVGiL~vkDLl~ 101 (396)
...++.++|.+ ++.+++.++++. +++..|.+++.+++||++++ ++++|+++..|++.
T Consensus 65 ~~~~~~~~~~~--~~~~v~~~~~l~-~~~~~~~~~~~~~~~Vvd~~-g~~~Gvit~~dl~~ 121 (122)
T cd04635 65 ASPTVEKIMST--PVYSVTPDDSIA-TAVELMLEHDIGRLPVVNEK-DQLVGIVDRHDVLK 121 (122)
T ss_pred ccCcHHHHhcC--CCeeECCCCCHH-HHHHHHHHcCCCeeeEEcCC-CcEEEEEEhHHhhc
Confidence 45678899964 378899999998 99999999999999999765 78999999999864
No 158
>COG0517 FOG: CBS domain [General function prediction only]
Probab=96.84 E-value=0.0047 Score=50.44 Aligned_cols=54 Identities=28% Similarity=0.439 Sum_probs=47.1
Q ss_pred ccccccccCCCEEEEeCCCChhHHHHHHHHH-cCCcEEEEEeCCCCcEEEEEEhhhhc
Q psy4847 44 IVGDVMTKLEDVYMLSYDAILDFETVSEIMK-SGYSRIPVYEDRRTNIVTMFYIKDLA 100 (396)
Q Consensus 44 tV~dIMtp~~dv~~l~~d~~l~~e~i~~i~~-~g~sriPV~~~~~~~IVGiL~vkDLl 100 (396)
++.++|++ .++++..+.++. ++++.|.+ .++.++||++++.++++|+++.+|++
T Consensus 63 ~v~~v~~~--~~~~~~~~~~~~-~~~~~m~~~~~~~~lpVv~~~~~~lvGivt~~di~ 117 (117)
T COG0517 63 PVKEVMTK--PVVTVDPDTPLE-EALELMVERHKIRRLPVVDDDGGKLVGIITLSDIL 117 (117)
T ss_pred cHHHhccC--CcEEECCCCCHH-HHHHHHHHHcCcCeEEEEECCCCeEEEEEEHHHcC
Confidence 59999996 378999999999 99999999 79999999987522899999999974
No 159
>cd04583 CBS_pair_ABC_OpuCA_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with the ABC transporter OpuCA. OpuCA is the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment but the function of the CBS domains in OpuCA remains unknown. In the related ABC transporter, OpuA, the tandem CBS domains have been shown to function as sensors for ionic strength, whereby they control the transport activity through an electronic switching mechanism. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. They are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyz
Probab=96.83 E-value=0.0025 Score=51.38 Aligned_cols=56 Identities=23% Similarity=0.367 Sum_probs=48.6
Q ss_pred ccccccccccCCCEEEEeCCCChhHHHHHHHHHcCCcEEEEEeCCCCcEEEEEEhhhhcc
Q psy4847 42 RKIVGDVMTKLEDVYMLSYDAILDFETVSEIMKSGYSRIPVYEDRRTNIVTMFYIKDLAL 101 (396)
Q Consensus 42 ~~tV~dIMtp~~dv~~l~~d~~l~~e~i~~i~~~g~sriPV~~~~~~~IVGiL~vkDLl~ 101 (396)
...+.++|.+. +.+++.++++. +++..+.+.+..++||++++ ++++|+++.+|++.
T Consensus 53 ~~~v~~~~~~~--~~~v~~~~~~~-~~~~~~~~~~~~~~~vv~~~-g~~~Gvit~~~l~~ 108 (109)
T cd04583 53 AKSLEDIMLED--VFTVQPDASLR-DVLGLVLKRGPKYVPVVDED-GKLVGLITRSSLVD 108 (109)
T ss_pred CCcHhHhhcCC--ceEECCCCcHH-HHHHHHHHcCCceeeEECCC-CeEEEEEehHHhhc
Confidence 35689999754 78899999999 99999999999999999765 78999999999863
No 160
>cd04594 CBS_pair_EriC_assoc_archaea This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the EriC CIC-type chloride channels in archaea. These ion channels are proteins with a seemingly simple task of allowing the passive flow of chloride ions across biological membranes. CIC-type chloride channels come from all kingdoms of life, have several gene families, and can be gated by voltage. The members of the CIC-type chloride channel are double-barreled: two proteins forming homodimers at a broad interface formed by four helices from each protein. The two pores are not found at this interface, but are completely contained within each subunit, as deduced from the mutational analyses, unlike many other channels, in which four or five identical or structurally related subunits jointly form one pore. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS do
Probab=96.83 E-value=0.0031 Score=51.03 Aligned_cols=54 Identities=15% Similarity=0.158 Sum_probs=47.3
Q ss_pred cccccccccCCCEEEEeCCCChhHHHHHHHHHcCCcEEEEEeCCCCcEEEEEEhhhhcc
Q psy4847 43 KIVGDVMTKLEDVYMLSYDAILDFETVSEIMKSGYSRIPVYEDRRTNIVTMFYIKDLAL 101 (396)
Q Consensus 43 ~tV~dIMtp~~dv~~l~~d~~l~~e~i~~i~~~g~sriPV~~~~~~~IVGiL~vkDLl~ 101 (396)
.++.++|.+. ..+++.+.++. +++..|.+++..++||+++ ++++|+++..|++.
T Consensus 50 ~~~~~~~~~~--~~~v~~~~~l~-~a~~~~~~~~~~~~~Vv~~--~~~iGvit~~dl~~ 103 (104)
T cd04594 50 GDVVDYIVRG--IPYVRLTSTAE-EAWEVMMKNKTRWCPVVDD--GKFKGIVTLDSILD 103 (104)
T ss_pred cchhhhhhcC--CcEEcCCCCHH-HHHHHHHHcCcceEEEEEC--CEEEEEEEHHHhhc
Confidence 4588899765 67899999999 9999999999999999973 79999999999863
No 161
>cd04595 CBS_pair_DHH_polyA_Pol_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with an upstream DHH domain which performs a phosphoesterase function and a downstream polyA polymerase domain. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=96.83 E-value=0.003 Score=51.31 Aligned_cols=73 Identities=22% Similarity=0.231 Sum_probs=56.1
Q ss_pred cCCCCHHHHHHHHHHhcccccccccccccCCCEEEEeCCCChhHHHHHHHHHcCCcEEEEEeCCCCcEEEEEEhhhhcc
Q psy4847 23 FNDLEKDEVNIISGALELRRKIVGDVMTKLEDVYMLSYDAILDFETVSEIMKSGYSRIPVYEDRRTNIVTMFYIKDLAL 101 (396)
Q Consensus 23 ~~~l~~~E~~~i~~alel~~~tV~dIMtp~~dv~~l~~d~~l~~e~i~~i~~~g~sriPV~~~~~~~IVGiL~vkDLl~ 101 (396)
.|-+...+...... -.+.+.++.++|.+. +.+++.++++. ++++.|.+.+...+||.+ + ++++|+|+.+|++.
T Consensus 37 ~G~v~~~dl~~~~~-~~~~~~~~~~~~~~~--~~~v~~~~~l~-~~~~~~~~~~~~~~~V~~-~-~~~~Gvvt~~di~~ 109 (110)
T cd04595 37 VGIISRRDVEKALR-HGLGHAPVKDYMSTD--VVTVPPDTPLS-EVQELMVEHDIGRVPVVE-D-GRLVGIVTRTDLLR 109 (110)
T ss_pred EEEEEHHHHHHHHh-cccccCcHHHHhcCC--CEEECCCCcHH-HHHHHHHHcCCCeeEEEe-C-CEEEEEEEhHHhhc
Confidence 44466655432211 123567899999764 78899999999 999999999999999998 3 79999999999863
No 162
>cd04611 CBS_pair_PAS_GGDEF_DUF1_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with a PAS domain, a GGDEF (DiGuanylate-Cyclase (DGC) domain, and a DUF1 domain downstream. PAS domains have been found to bind ligands, and to act as sensors for light and oxygen in signal transduction. The GGDEF domain has been suggested to be homologous to the adenylyl cyclase catalytic domain and is thought to be involved in regulating cell surface adhesiveness in bacteria. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CB
Probab=96.82 E-value=0.0028 Score=51.31 Aligned_cols=57 Identities=19% Similarity=0.293 Sum_probs=49.5
Q ss_pred cccccccccccCCCEEEEeCCCChhHHHHHHHHHcCCcEEEEEeCCCCcEEEEEEhhhhcc
Q psy4847 41 RRKIVGDVMTKLEDVYMLSYDAILDFETVSEIMKSGYSRIPVYEDRRTNIVTMFYIKDLAL 101 (396)
Q Consensus 41 ~~~tV~dIMtp~~dv~~l~~d~~l~~e~i~~i~~~g~sriPV~~~~~~~IVGiL~vkDLl~ 101 (396)
.+.++.++|.+. +..++.++++. ++++.+.+.+...+||++++ ++++|+|+.+|++.
T Consensus 54 ~~~~v~~~~~~~--~~~~~~~~~l~-~~l~~~~~~~~~~~~Vv~~~-~~~~Gvi~~~di~~ 110 (111)
T cd04611 54 LQTPVGEVMSSP--LLTVPADTSLY-DARQLMREHGIRHLVVVDDD-GELLGLLSQTDLLQ 110 (111)
T ss_pred CCcCHHHhcCCC--ceEECCCCCHH-HHHHHHHHcCCeEEEEECCC-CcEEEEEEhHHhhc
Confidence 467799999753 78899999999 99999999999999999765 78999999999864
No 163
>cd04586 CBS_pair_BON_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the BON (bacterial OsmY and nodulation domain) domain. BON is a putative phospholipid-binding domain found in a family of osmotic shock protection proteins. It is also found in some secretins and a group of potential haemolysins. Its likely function is attachment to phospholipid membranes. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=96.82 E-value=0.0018 Score=55.05 Aligned_cols=56 Identities=27% Similarity=0.315 Sum_probs=49.5
Q ss_pred cccccccccccCCCEEEEeCCCChhHHHHHHHHHcCCcEEEEEeCCCCcEEEEEEhhhhcc
Q psy4847 41 RRKIVGDVMTKLEDVYMLSYDAILDFETVSEIMKSGYSRIPVYEDRRTNIVTMFYIKDLAL 101 (396)
Q Consensus 41 ~~~tV~dIMtp~~dv~~l~~d~~l~~e~i~~i~~~g~sriPV~~~~~~~IVGiL~vkDLl~ 101 (396)
...++.++|.+. +.+++.++++. +++..|.+.+..++||++ + |+++|+|+.+|++.
T Consensus 79 ~~~~v~~~~~~~--~~~v~~~~~~~-~~~~~~~~~~~~~l~Vvd-~-g~~~Gvit~~di~~ 134 (135)
T cd04586 79 HGRKVADVMTRP--VVTVGEDTPLA-EVAELMEEHRIKRVPVVR-G-GRLVGIVSRADLLR 134 (135)
T ss_pred cCCCHHHHhCCC--ceEeCCCCcHH-HHHHHHHHcCCCccCEec-C-CEEEEEEEhHhhhc
Confidence 457899999753 78999999999 999999999999999998 4 89999999999864
No 164
>cd04614 CBS_pair_1 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera
Probab=96.81 E-value=0.0035 Score=50.54 Aligned_cols=49 Identities=24% Similarity=0.218 Sum_probs=41.7
Q ss_pred CCceEEcCCCCHHHHHHHHHhcCCceEEEEEEeCCCCCCCCCCceeeeecHHHHHHHH
Q psy4847 119 NSCYFVFEDTTLDVLLKQFKEGIKGHMAFVHRVNNEGEGDPFYETVGLITLEDVIEEL 176 (396)
Q Consensus 119 ~~v~~V~~dt~L~~~L~~f~~~~~~h~avV~~~~~~~~~De~g~~vGIVTleDIiEel 176 (396)
++++.|.+++++.++++.|.+. +...++|+ |+.|+++|+||..|+....
T Consensus 1 ~~~~~v~~~~~i~~a~~~~~~~-~~~~~~V~--------d~~~~~~Giv~~~dl~~~~ 49 (96)
T cd04614 1 RNVPTVWEETPLPVAVRIMELA-NVKALPVL--------DDDGKLSGIITERDLIAKS 49 (96)
T ss_pred CCccEeCCCCcHHHHHHHHHHc-CCCeEEEE--------CCCCCEEEEEEHHHHhcCC
Confidence 3577899999999999999874 66677777 8889999999999998754
No 165
>PRK11543 gutQ D-arabinose 5-phosphate isomerase; Provisional
Probab=96.80 E-value=0.0026 Score=62.93 Aligned_cols=75 Identities=12% Similarity=0.069 Sum_probs=57.1
Q ss_pred cCCCCHHHHHHHHHHhcccccccccccccCCCEEEEeCCCChhHHHHHHHHHcCCcEEEEEeCCCCcEEEEEEhhhhcc
Q psy4847 23 FNDLEKDEVNIISGALELRRKIVGDVMTKLEDVYMLSYDAILDFETVSEIMKSGYSRIPVYEDRRTNIVTMFYIKDLAL 101 (396)
Q Consensus 23 ~~~l~~~E~~~i~~alel~~~tV~dIMtp~~dv~~l~~d~~l~~e~i~~i~~~g~sriPV~~~~~~~IVGiL~vkDLl~ 101 (396)
.|.++..+..-....-...+.+|+++|++. +.++++++++. ++++.|.+++..++||++++ ++++|+|+.+|++.
T Consensus 243 iG~vt~~dl~~~~~~~~~~~~~v~~im~~~--~~~v~~~~~l~-~a~~~m~~~~~~~lpVvd~~-~~lvGvIt~~di~~ 317 (321)
T PRK11543 243 QGVFTDGDLRRWLVGGGALTTPVNEAMTRG--GTTLQAQSRAI-DAKEILMKRKITAAPVVDEN-GKLTGAINLQDFYQ 317 (321)
T ss_pred EEEecHHHHHHHHhCCCCcCCcHHHhcCCC--CEEECCCCCHH-HHHHHHHHcCCCEEEEEcCC-CeEEEEEEHHHHHh
Confidence 345666664321111012356699999864 77899999999 99999999999999999865 68999999999975
No 166
>cd04629 CBS_pair_16 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=96.77 E-value=0.0023 Score=52.17 Aligned_cols=56 Identities=25% Similarity=0.290 Sum_probs=49.3
Q ss_pred cccccccccccCCCEEEEeCCCChhHHHHHHHHHcCCcEEEEEeCCCCcEEEEEEhhhhcc
Q psy4847 41 RRKIVGDVMTKLEDVYMLSYDAILDFETVSEIMKSGYSRIPVYEDRRTNIVTMFYIKDLAL 101 (396)
Q Consensus 41 ~~~tV~dIMtp~~dv~~l~~d~~l~~e~i~~i~~~g~sriPV~~~~~~~IVGiL~vkDLl~ 101 (396)
.+.++.++|.+. +.+++.++++. ++++.|.+.+...+||+++ +.++|+|+.+||+.
T Consensus 58 ~~~~v~~~~~~~--~~~v~~~~~l~-~~~~~~~~~~~~~~~Vv~~--~~~~Gvit~~di~~ 113 (114)
T cd04629 58 GVATVRDIMTTE--VLTVSPDDSIV-DLAQLMLKAKPKRYPVVDD--GKLVGQISRRDVLR 113 (114)
T ss_pred CCccHHHHhccC--ceEECCCCcHH-HHHHHHHHhCCCccCEEEC--CEEEEEEEHHHHhc
Confidence 356799999754 77899999999 9999999999999999986 78999999999864
No 167
>cd04802 CBS_pair_3 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera
Probab=96.76 E-value=0.0031 Score=51.26 Aligned_cols=56 Identities=29% Similarity=0.501 Sum_probs=48.8
Q ss_pred cccccccccccCCCEEEEeCCCChhHHHHHHHHHcCCcEEEEEeCCCCcEEEEEEhhhhcc
Q psy4847 41 RRKIVGDVMTKLEDVYMLSYDAILDFETVSEIMKSGYSRIPVYEDRRTNIVTMFYIKDLAL 101 (396)
Q Consensus 41 ~~~tV~dIMtp~~dv~~l~~d~~l~~e~i~~i~~~g~sriPV~~~~~~~IVGiL~vkDLl~ 101 (396)
.+.++.++|.+. +.+++.++++. ++++.+.+++...+||+++ ++++|+|+.+|++.
T Consensus 56 ~~~~~~~~~~~~--~~~v~~~~~l~-~~~~~~~~~~~~~~~Vv~~--~~~~Gvi~~~di~~ 111 (112)
T cd04802 56 REVPVGEVMSTP--LITIDPNASLN-EAAKLMAKHGIKRLPVVDD--DELVGIVTTTDIVM 111 (112)
T ss_pred ccCCHHHhcCCC--cEEECCCCCHH-HHHHHHHHcCCCeeEEeeC--CEEEEEEEhhhhhc
Confidence 456899999754 78899999999 9999999999999999976 38999999999863
No 168
>cd04612 CBS_pair_SpoIVFB_EriC_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with either the SpoIVFB domain (sporulation protein, stage IV cell wall formation, F locus, promoter-distal B) or the chloride channel protein EriC. SpoIVFB is one of 4 proteins involved in endospore formation; the others are SpoIVFA (sporulation protein, stage IV cell wall formation, F locus, promoter-proximal A), BofA (bypass-of-forespore A ), and SpoIVB (sporulation protein, stage IV cell wall formation, B locus). SpoIVFB is negatively regulated by SpoIVFA and BofA and activated by SpoIVB. It is thought that SpoIVFB, SpoIVFA, and BofA are located in the mother-cell membrane that surrounds the forespore and that SpoIVB is secreted from the forespore into the space between the two where it activates SpoIVFB. EriC is involved in inorganic ion transport and metabolism. CBS is a small domain originally identified in cystathionine beta-synthase an
Probab=96.76 E-value=0.0037 Score=50.56 Aligned_cols=54 Identities=30% Similarity=0.429 Sum_probs=47.5
Q ss_pred ccccccccCCCEEEEeCCCChhHHHHHHHHHcCCcEEEEEeCCCCcEEEEEEhhhhcc
Q psy4847 44 IVGDVMTKLEDVYMLSYDAILDFETVSEIMKSGYSRIPVYEDRRTNIVTMFYIKDLAL 101 (396)
Q Consensus 44 tV~dIMtp~~dv~~l~~d~~l~~e~i~~i~~~g~sriPV~~~~~~~IVGiL~vkDLl~ 101 (396)
++.++|++. +.+++.++++. ++++.+.+.+...+||++++ ++++|+|+..|++.
T Consensus 57 ~~~~~~~~~--~~~v~~~~~~~-~~~~~~~~~~~~~~~V~~~~-~~~~G~it~~di~~ 110 (111)
T cd04612 57 LVGDVMTRD--PVTASPDETLR-DALKRMAERDIGRLPVVDDS-GRLVGIVSRSDLLR 110 (111)
T ss_pred CHHHhccCC--CeEECCCCCHH-HHHHHHHhCCCCeeeEEcCC-CCEEEEEEHHHhhh
Confidence 678899754 78899999999 99999999999999999764 78999999999864
No 169
>cd04606 CBS_pair_Mg_transporter This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domain in the magnesium transporter, MgtE. MgtE and its homologs are found in eubacteria, archaebacteria, and eukaryota. Members of this family transport Mg2+ or other divalent cations into the cell via two highly conserved aspartates. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=96.75 E-value=0.0029 Score=51.51 Aligned_cols=56 Identities=21% Similarity=0.252 Sum_probs=49.1
Q ss_pred ccccccccccCCCEEEEeCCCChhHHHHHHHHHcCCcEEEEEeCCCCcEEEEEEhhhhcc
Q psy4847 42 RKIVGDVMTKLEDVYMLSYDAILDFETVSEIMKSGYSRIPVYEDRRTNIVTMFYIKDLAL 101 (396)
Q Consensus 42 ~~tV~dIMtp~~dv~~l~~d~~l~~e~i~~i~~~g~sriPV~~~~~~~IVGiL~vkDLl~ 101 (396)
+.+++++|.+. +..++.++++. ++++.+.+.+...+||++++ ++++|+|+..||+.
T Consensus 52 ~~~v~~~~~~~--~~~i~~~~~~~-~~~~~~~~~~~~~~~Vv~~~-~~~~Gvit~~dll~ 107 (109)
T cd04606 52 DTPVSDIMDTD--VISVSADDDQE-EVARLFEKYDLLALPVVDEE-GRLVGIITVDDVID 107 (109)
T ss_pred cchHHHHhCCC--CeEEcCCCCHH-HHHHHHHHcCCceeeeECCC-CcEEEEEEhHHhhh
Confidence 56799999764 78899999999 99999999999999999765 78999999999974
No 170
>cd04800 CBS_pair_CAP-ED_DUF294_PBI_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with either the CAP_ED (cAMP receptor protein effector domain) family of transcription factors and the DUF294 domain or the PB1 (Phox and Bem1p) domain. Members of CAP_ED, include CAP which binds cAMP, FNR (fumarate and nitrate reductase) which uses an iron-sulfur cluster to sense oxygen, and CooA a heme containing CO sensor. In all cases binding of the effector leads to conformational changes and the ability to activate transcription. DUF294 is a putative nucleotidyltransferase with a conserved DxD motif. The PB1 domain adopts a beta-grasp fold, similar to that found in ubiquitin and Ras-binding domains. A motif, variously termed OPR, PC and AID, represents the most conserved region of the majority of PB1 domains, and is necessary for PB1 domain function. This function is the formation of PB1 domain heterodimers, although not all PB1 domain pa
Probab=96.73 E-value=0.003 Score=51.27 Aligned_cols=55 Identities=25% Similarity=0.347 Sum_probs=48.7
Q ss_pred ccccccccccCCCEEEEeCCCChhHHHHHHHHHcCCcEEEEEeCCCCcEEEEEEhhhhcc
Q psy4847 42 RKIVGDVMTKLEDVYMLSYDAILDFETVSEIMKSGYSRIPVYEDRRTNIVTMFYIKDLAL 101 (396)
Q Consensus 42 ~~tV~dIMtp~~dv~~l~~d~~l~~e~i~~i~~~g~sriPV~~~~~~~IVGiL~vkDLl~ 101 (396)
+.++.++|.. .+.+++.++++. ++++.|.+++.+++||+++ ++++|+++.+|++.
T Consensus 56 ~~~i~~~~~~--~~~~v~~~~~l~-~~~~~~~~~~~~~~~Vv~~--~~~~Giit~~di~~ 110 (111)
T cd04800 56 DTPVSEVMTA--PPITIPPDATVF-EALLLMLERGIHHLPVVDD--GRLVGVISATDLLR 110 (111)
T ss_pred cCCHHHHhCC--CCeEECCCCcHH-HHHHHHHHcCCCeeeEeEC--CEEEEEEEHHHhhc
Confidence 4679999965 478999999999 9999999999999999976 78999999999864
No 171
>cd04639 CBS_pair_26 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=96.73 E-value=0.0028 Score=51.46 Aligned_cols=75 Identities=19% Similarity=0.229 Sum_probs=55.7
Q ss_pred ccCCCCHHHHHHHHHHhcccccccccccccCCCEEEEeCCCChhHHHHHHHHHcCCcEEEEEeCCCCcEEEEEEhhhhcc
Q psy4847 22 EFNDLEKDEVNIISGALELRRKIVGDVMTKLEDVYMLSYDAILDFETVSEIMKSGYSRIPVYEDRRTNIVTMFYIKDLAL 101 (396)
Q Consensus 22 e~~~l~~~E~~~i~~alel~~~tV~dIMtp~~dv~~l~~d~~l~~e~i~~i~~~g~sriPV~~~~~~~IVGiL~vkDLl~ 101 (396)
..|.++..+....... ...+..+.++|.. ++..++.+.++. ++++.|.+++..++||++++ ++++|+++.+||..
T Consensus 36 ~~G~v~~~~l~~~~~~-~~~~~~v~~~~~~--~~~~i~~~~~~~-~~~~~~~~~~~~~~~Vv~~~-~~~~G~it~~dl~~ 110 (111)
T cd04639 36 LVGLLTRDDLIRALAE-GGPDAPVRGVMRR--DFPTVSPSATLD-AVLRLMQQGGAPAVPVVDGS-GRLVGLVTLENVGE 110 (111)
T ss_pred EEEEeeHHHHHHHHHh-cCCCCcHHHHhcC--CCcEECCCCcHH-HHHHHHHhcCCceeeEEcCC-CCEEEEEEHHHhhc
Confidence 3445555554321111 1234579999974 478899999999 99999999999999999765 78999999999863
No 172
>cd04602 CBS_pair_IMPDH_2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the inosine 5' monophosphate dehydrogenase (IMPDH) protein. IMPDH is an essential enzyme that catalyzes the first step unique to GTP synthesis, playing a key role in the regulation of cell proliferation and differentiation. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain in IMPDH have been associated with retinitis pigmentos
Probab=96.73 E-value=0.0026 Score=52.31 Aligned_cols=58 Identities=21% Similarity=0.283 Sum_probs=46.5
Q ss_pred ccccccccccCCCEEEEeCCCChhHHHHHHHHHcCCcEEEEEeCCCCcEEEEEEhhhhcc
Q psy4847 42 RKIVGDVMTKLEDVYMLSYDAILDFETVSEIMKSGYSRIPVYEDRRTNIVTMFYIKDLAL 101 (396)
Q Consensus 42 ~~tV~dIMtp~~dv~~l~~d~~l~~e~i~~i~~~g~sriPV~~~~~~~IVGiL~vkDLl~ 101 (396)
...++++|.+....+..+.++++. ++++.|.+++...+||++++ ++++|+|+.+|++.
T Consensus 56 ~~~v~~~~~~~~~~~~~~~~~~l~-~~l~~~~~~~~~~~pVv~~~-~~~~Gvit~~di~~ 113 (114)
T cd04602 56 ETPLSEVMTPREVLVVAPTGITLE-EANEILRESKKGKLPIVNDD-GELVALVTRSDLKK 113 (114)
T ss_pred CCCHHHhcCCCceEEECCCCCCHH-HHHHHHHhcCCCceeEECCC-CeEEEEEEHHHhhc
Confidence 345899998663333334489998 99999999999999999765 78999999999863
No 173
>cd04641 CBS_pair_28 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=96.70 E-value=0.0054 Score=50.85 Aligned_cols=49 Identities=20% Similarity=0.032 Sum_probs=42.2
Q ss_pred CceEEcCCCCHHHHHHHHHhcCCceEEEEEEeCCCCCCCCCCceeeeecHHHHHHHHH
Q psy4847 120 SCYFVFEDTTLDVLLKQFKEGIKGHMAFVHRVNNEGEGDPFYETVGLITLEDVIEELI 177 (396)
Q Consensus 120 ~v~~V~~dt~L~~~L~~f~~~~~~h~avV~~~~~~~~~De~g~~vGIVTleDIiEeli 177 (396)
++.++++++++.++++.|.+. +.+.++|+ |+.|+++|+||..|++..+.
T Consensus 2 ~~~~i~~~~~l~~a~~~~~~~-~~~~~pVv--------~~~~~~~Giv~~~dl~~~~~ 50 (120)
T cd04641 2 NIATARPDTPLIDVLDMLVER-RVSALPIV--------DENGKVVDVYSRFDVINLAK 50 (120)
T ss_pred CcEEEcCCCCHHHHHHHHHHc-CCCeeeEE--------CCCCeEEEEEeHHHHHHHHh
Confidence 567899999999999999885 66777777 77789999999999997654
No 174
>cd04593 CBS_pair_EriC_assoc_bac_arch This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the EriC CIC-type chloride channels in bacteria and archaea. These ion channels are proteins with a seemingly simple task of allowing the passive flow of chloride ions across biological membranes. CIC-type chloride channels come from all kingdoms of life, have several gene families, and can be gated by voltage. The members of the CIC-type chloride channel are double-barreled: two proteins forming homodimers at a broad interface formed by four helices from each protein. The two pores are not found at this interface, but are completely contained within each subunit, as deduced from the mutational analyses, unlike many other channels, in which four or five identical or structurally related subunits jointly form one pore. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS d
Probab=96.69 E-value=0.004 Score=51.07 Aligned_cols=57 Identities=16% Similarity=0.308 Sum_probs=48.6
Q ss_pred ccccccccccCCCEEEEeCCCChhHHHHHHHHHcCCcEEEEEeCC-CCcEEEEEEhhhhcc
Q psy4847 42 RKIVGDVMTKLEDVYMLSYDAILDFETVSEIMKSGYSRIPVYEDR-RTNIVTMFYIKDLAL 101 (396)
Q Consensus 42 ~~tV~dIMtp~~dv~~l~~d~~l~~e~i~~i~~~g~sriPV~~~~-~~~IVGiL~vkDLl~ 101 (396)
..++.++|.+ ++.+++.++++. ++++.|.+++..++||++++ .++++|+|+..|++.
T Consensus 57 ~~~~~~~~~~--~~~~v~~~~~l~-~~l~~~~~~~~~~~~Vvd~~~~~~~~Gvit~~di~~ 114 (115)
T cd04593 57 PSAVDEVATP--PLLTVHPDEPLA-HALDRMASRGLRQLPVVDRGNPGQVLGLLTRENVLL 114 (115)
T ss_pred cccHHHhccC--CceEECCCCCHH-HHHHHHHHcCCceeeEEeCCCCCeEEEEEEhHHhhc
Confidence 3458899975 478899999999 99999999999999999764 268999999999864
No 175
>KOG1764|consensus
Probab=96.69 E-value=0.011 Score=60.62 Aligned_cols=146 Identities=19% Similarity=0.129 Sum_probs=101.8
Q ss_pred CCHHHHHHHHHHhcccccccccc--cccCCCEEEEeCCCChhHHHHHHHHHcCCcEEEEEeCCCCcEEEEEEhhhhcccC
Q psy4847 26 LEKDEVNIISGALELRRKIVGDV--MTKLEDVYMLSYDAILDFETVSEIMKSGYSRIPVYEDRRTNIVTMFYIKDLALVD 103 (396)
Q Consensus 26 l~~~E~~~i~~alel~~~tV~dI--Mtp~~dv~~l~~d~~l~~e~i~~i~~~g~sriPV~~~~~~~IVGiL~vkDLl~~~ 103 (396)
+..+....+....-...+.+..+ ++.....+.+.+...+- ++...+.++++.|+||.+...++++.+++.+-++..-
T Consensus 133 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~p~~s~l-~~~~~l~~~~~~rvpv~d~~~~~v~~ilt~~rIl~~l 211 (381)
T KOG1764|consen 133 SSLDNIEVLEDSQLSKRREVECLLKETLKPPFVSISPESSLL-DAVLLLIKSRIHRVPVIDPETGEVLYILTQRRILKFL 211 (381)
T ss_pred CcHHHHhhhhhhhccccchhhhhhccccCCCceeecCcHHHH-HHHHHHHhCCccceeeecccccceeeehhHHHHHHHH
Confidence 45555555555555555555333 44544446777777666 7888899999999999985567999999999986421
Q ss_pred -------Ccc---ccchhhhhhhhcCCceEEcCCCCHHHHHHHHHhcCCceEEEEEEeCCCCCCCCCCceeeeecHHHHH
Q psy4847 104 -------PDD---NTPLKTLCQFYQNSCYFVFEDTTLDVLLKQFKEGIKGHMAFVHRVNNEGEGDPFYETVGLITLEDVI 173 (396)
Q Consensus 104 -------~~~---~~~l~~v~~~~~~~v~~V~~dt~L~~~L~~f~~~~~~h~avV~~~~~~~~~De~g~~vGIVTleDIi 173 (396)
+.. ..++.++.--....+..+..++++.++++.|... +..-++|+ |.+|+.+|+++.-|++
T Consensus 212 ~~~~~~~~~~~~l~~s~~dl~ig~~~~i~~i~~~~~v~~al~~m~~~-~is~lpvV--------~~~g~~v~~~s~~Dv~ 282 (381)
T KOG1764|consen 212 WLNGRLLPLPSLLSKSLSDLGIGTWSNIASISEDTPVIEALKIMSER-RISALPVV--------DENGKKVGNYSRFDVI 282 (381)
T ss_pred HHhhcccccHHHhhCCHHHhCcchhhhheeecCCCcHHHHHHHHHhc-CcCcceEE--------cCCCceecceehhhhh
Confidence 100 0122222111123588999999999999999985 56666666 8889999999999999
Q ss_pred HHHHhccc
Q psy4847 174 EELIQAEI 181 (396)
Q Consensus 174 Eeli~~eI 181 (396)
-.+..+.+
T Consensus 283 ~l~~~~~~ 290 (381)
T KOG1764|consen 283 HLAREGTY 290 (381)
T ss_pred hhhhcCcc
Confidence 98875443
No 176
>PTZ00314 inosine-5'-monophosphate dehydrogenase; Provisional
Probab=96.64 E-value=0.0029 Score=66.93 Aligned_cols=60 Identities=22% Similarity=0.283 Sum_probs=53.9
Q ss_pred cccccccccccCCCEEEEeCCCChhHHHHHHHHHcCCcEEEEEeCCCCcEEEEEEhhhhccc
Q psy4847 41 RRKIVGDVMTKLEDVYMLSYDAILDFETVSEIMKSGYSRIPVYEDRRTNIVTMFYIKDLALV 102 (396)
Q Consensus 41 ~~~tV~dIMtp~~dv~~l~~d~~l~~e~i~~i~~~g~sriPV~~~~~~~IVGiL~vkDLl~~ 102 (396)
.+.+|+++|++..++++++.+.++. ++++.|.+++...+||++++ ++++|+|+.+||+..
T Consensus 157 ~~~~V~diMt~~~~lvtv~~~~sl~-eAl~lm~e~~i~~LPVVd~~-g~liGIIT~~DIl~~ 216 (495)
T PTZ00314 157 KSTPVSEVMTPREKLVVGNTPISLE-EANEVLRESRKGKLPIVNDN-GELVALVSRSDLKKN 216 (495)
T ss_pred CCCCHHHhhCCcCCceEeCCCCCHH-HHHHHHHHcCCCeEEEEcCC-CcEEEEEEehHhhhc
Confidence 3567999999866789999999999 99999999999999999865 789999999999854
No 177
>cd04592 CBS_pair_EriC_assoc_euk This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the EriC CIC-type chloride channels in eukaryotes. These ion channels are proteins with a seemingly simple task of allowing the passive flow of chloride ions across biological membranes. CIC-type chloride channels come from all kingdoms of life, have several gene families, and can be gated by voltage. The members of the CIC-type chloride channel are double-barreled: two proteins forming homodimers at a broad interface formed by four helices from each protein. The two pores are not found at this interface, but are completely contained within each subunit, as deduced from the mutational analyses, unlike many other channels, in which four or five identical or structurally related subunits jointly form one pore. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually
Probab=96.63 E-value=0.0063 Score=52.63 Aligned_cols=49 Identities=27% Similarity=0.188 Sum_probs=42.5
Q ss_pred CceEEcCCCCHHHHHHHHHhcCCceEEEEEEeCCCCCCCCCCceeeeecHHHHHHHHH
Q psy4847 120 SCYFVFEDTTLDVLLKQFKEGIKGHMAFVHRVNNEGEGDPFYETVGLITLEDVIEELI 177 (396)
Q Consensus 120 ~v~~V~~dt~L~~~L~~f~~~~~~h~avV~~~~~~~~~De~g~~vGIVTleDIiEeli 177 (396)
.+..+.+++++.++++.|.+. ..+.++|+ |+.|+++|+||..|++..+.
T Consensus 2 ~~~~v~~~~~l~ea~~~m~~~-~~~~~~Vv--------D~~g~l~Givt~~Dl~~~~~ 50 (133)
T cd04592 2 KYIKVSPTTTLKEALNLMLDE-KQSCVLVV--------DSDDFLEGILTLGDIQRFLF 50 (133)
T ss_pred CceEECCCCCHHHHHHHHHHc-CCCEEEEE--------CCCCeEEEEEEHHHHHHHHh
Confidence 467899999999999999874 55667777 88899999999999999886
No 178
>cd04624 CBS_pair_11 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=96.57 E-value=0.0073 Score=49.07 Aligned_cols=74 Identities=15% Similarity=0.218 Sum_probs=55.0
Q ss_pred cCCCCHHHH-HHHHHHhcccccccccccccCCCEEEEeCCCChhHHHHHHHHHcCCcEEEEEeCCCCcEEEEEEhhhhcc
Q psy4847 23 FNDLEKDEV-NIISGALELRRKIVGDVMTKLEDVYMLSYDAILDFETVSEIMKSGYSRIPVYEDRRTNIVTMFYIKDLAL 101 (396)
Q Consensus 23 ~~~l~~~E~-~~i~~alel~~~tV~dIMtp~~dv~~l~~d~~l~~e~i~~i~~~g~sriPV~~~~~~~IVGiL~vkDLl~ 101 (396)
-|.+...+. ..+..-. ..+..+.++|.+. +.+++.++++. ++++.+.+++...+||++++ +.++|+|+.+|++.
T Consensus 37 ~G~v~~~~l~~~~~~~~-~~~~~v~~~~~~~--~~~v~~~~~~~-~~~~~~~~~~~~~~~Vv~~~-g~~~Gilt~~dl~~ 111 (112)
T cd04624 37 IGIVTERDIVRAVAAGI-DLDTPVSEIMTRD--LVTVDPDEPVA-EAAKLMRKNNIRHHLVVDKG-GELVGVISIRDLVR 111 (112)
T ss_pred EEEeeHHHHHHHHhccC-CCccCHHHhccCC--CEEECCCCcHH-HHHHHHHHcCccEEEEEcCC-CcEEEEEEHHHhcc
Confidence 344666664 2222211 2245788999753 78899999998 99999999999999999765 78999999999863
No 179
>COG3448 CBS-domain-containing membrane protein [Signal transduction mechanisms]
Probab=96.55 E-value=0.0044 Score=60.70 Aligned_cols=62 Identities=24% Similarity=0.261 Sum_probs=55.1
Q ss_pred HHhcccccccccccccCCCEEEEeCCCChhHHHHHHHHHcCCcEEEEEeCCCCcEEEEEEhhhhcc
Q psy4847 36 GALELRRKIVGDVMTKLEDVYMLSYDAILDFETVSEIMKSGYSRIPVYEDRRTNIVTMFYIKDLAL 101 (396)
Q Consensus 36 ~alel~~~tV~dIMtp~~dv~~l~~d~~l~~e~i~~i~~~g~sriPV~~~~~~~IVGiL~vkDLl~ 101 (396)
+.-.+..-+|+.|||+. +.++.++++.. +++-.+.+.|...+||+|+. |+++|||+-.|++.
T Consensus 308 rlr~~~~~~vk~imt~~--v~tv~pdtpa~-~lvp~lad~g~H~lpvld~~-g~lvGIvsQtDlia 369 (382)
T COG3448 308 RLRFLRPPTVKGIMTTP--VVTVRPDTPAV-ELVPRLADEGLHALPVLDAA-GKLVGIVSQTDLIA 369 (382)
T ss_pred HhhccCCCcccccccCc--ceeecCCCcHH-HHHHHhhcCCcceeeEEcCC-CcEEEEeeHHHHHH
Confidence 34456889999999976 89999999999 99999999999999999876 89999999999974
No 180
>cd04637 CBS_pair_24 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=96.50 E-value=0.0046 Score=51.18 Aligned_cols=56 Identities=23% Similarity=0.380 Sum_probs=48.4
Q ss_pred ccccccccccCCCEEEEeCCCChhHHHHHHHHHcCCcEEEEEeCCCCcEEEEEEhhhhcc
Q psy4847 42 RKIVGDVMTKLEDVYMLSYDAILDFETVSEIMKSGYSRIPVYEDRRTNIVTMFYIKDLAL 101 (396)
Q Consensus 42 ~~tV~dIMtp~~dv~~l~~d~~l~~e~i~~i~~~g~sriPV~~~~~~~IVGiL~vkDLl~ 101 (396)
...+.++|.+ ++.+++.++++. ++++.+.+++..++||++++ ++++|+++.+|++.
T Consensus 66 ~~~~~~~~~~--~~~~v~~~~~l~-~~~~~~~~~~~~~~~vv~~~-~~~~Gvit~~dll~ 121 (122)
T cd04637 66 NRRAHQIMTR--DPITVSPDTPVD-EASKLLLENSISCLPVVDEN-GQLIGIITWKDLLK 121 (122)
T ss_pred HhHHHHhhcC--CCeeeCCCCcHH-HHHHHHHHcCCCeEeEECCC-CCEEEEEEHHHhhh
Confidence 3468899974 478999999999 99999999999999999765 78999999999864
No 181
>cd04605 CBS_pair_MET2_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the MET2 domain. Met2 is a key enzyme in the biosynthesis of methionine. It encodes a homoserine transacetylase involved in converting homoserine to O-acetyl homoserine. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=96.50 E-value=0.0089 Score=48.37 Aligned_cols=54 Identities=22% Similarity=0.386 Sum_probs=47.1
Q ss_pred cccccccccCCCEEEEeCCCChhHHHHHHHHHcCCcEEEEEeCCCCcEEEEEEhhhhc
Q psy4847 43 KIVGDVMTKLEDVYMLSYDAILDFETVSEIMKSGYSRIPVYEDRRTNIVTMFYIKDLA 100 (396)
Q Consensus 43 ~tV~dIMtp~~dv~~l~~d~~l~~e~i~~i~~~g~sriPV~~~~~~~IVGiL~vkDLl 100 (396)
..+.++|.+. +..++.++++. ++++.|.+++...+||++++ ++++|+|+.+|++
T Consensus 55 ~~~~~~~~~~--~~~v~~~~~l~-~~~~~~~~~~~~~~~Vv~~~-~~~~G~v~~~di~ 108 (110)
T cd04605 55 KSVEDIMTRN--VITATPDEPID-VAARKMERHNISALPVVDAE-NRVIGIITSEDIS 108 (110)
T ss_pred cCHHHhcCCC--CeEECCCCcHH-HHHHHHHHhCCCEEeEECCC-CcEEEEEEHHHhh
Confidence 4588999653 77899999999 99999999999999999765 7899999999985
No 182
>cd04643 CBS_pair_30 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=96.49 E-value=0.0095 Score=48.60 Aligned_cols=49 Identities=24% Similarity=0.181 Sum_probs=42.5
Q ss_pred CceEEcCCCCHHHHHHHHHhcCCceEEEEEEeCCCCCCCCCCceeeeecHHHHHHHHH
Q psy4847 120 SCYFVFEDTTLDVLLKQFKEGIKGHMAFVHRVNNEGEGDPFYETVGLITLEDVIEELI 177 (396)
Q Consensus 120 ~v~~V~~dt~L~~~L~~f~~~~~~h~avV~~~~~~~~~De~g~~vGIVTleDIiEeli 177 (396)
.+.+++.++++.++++.|.+. +.+.++|+ |+.|+++|+|+..|++..+.
T Consensus 2 ~~~~v~~~~~~~~~~~~~~~~-~~~~~~V~--------d~~~~~~Giv~~~dl~~~~~ 50 (116)
T cd04643 2 EVAYVQDTNTLRHALLVLTKH-GYSAIPVL--------DKEGKYVGTISLTDILWKLK 50 (116)
T ss_pred CcEEECCCCcHHHHHHHHHHC-CCceeeeE--------CCCCcEEEEEeHHHHHHHhh
Confidence 467899999999999999884 66777787 77899999999999998775
No 183
>cd04608 CBS_pair_PALP_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the pyridoxal-phosphate (PALP) dependent enzyme domain upstream. The vitamin B6 complex comprises pyridoxine, pyridoxal, and pyridoxamine, as well as the 5'-phosphate esters of pyridoxal (PALP) and pyridoxamine, the last two being the biologically active coenzyme derivatives. The members of the PALP family are principally involved in the biosynthesis of amino acids and amino acid-derived metabolites, but they are also found in the biosynthetic pathways of amino sugars and other amine-containing compounds. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a poten
Probab=96.44 E-value=0.014 Score=49.35 Aligned_cols=50 Identities=20% Similarity=0.167 Sum_probs=42.7
Q ss_pred CCceEEcCCCCHHHHHHHHHhcCCceEEEEEEeCCCCCCCCCCceeeeecHHHHHHHHH
Q psy4847 119 NSCYFVFEDTTLDVLLKQFKEGIKGHMAFVHRVNNEGEGDPFYETVGLITLEDVIEELI 177 (396)
Q Consensus 119 ~~v~~V~~dt~L~~~L~~f~~~~~~h~avV~~~~~~~~~De~g~~vGIVTleDIiEeli 177 (396)
+++.++++++++.++++.|++. +...++|+ |+.|+++|+||..|++..+.
T Consensus 2 ~~~~~v~~~~~v~~a~~~m~~~-~~~~~~Vv--------d~~~~~~Gii~~~dl~~~~~ 51 (124)
T cd04608 2 KAPVTVLPTVTCAEAIEILKEK-GFDQLPVV--------DESGKILGMVTLGNLLSSLS 51 (124)
T ss_pred CCCEEECCCCCHHHHHHHHHHc-CCCEEEEE--------cCCCCEEEEEEHHHHHHHHH
Confidence 4678999999999999999984 55566666 77789999999999998876
No 184
>cd04642 CBS_pair_29 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=96.41 E-value=0.0074 Score=50.58 Aligned_cols=51 Identities=12% Similarity=0.254 Sum_probs=43.9
Q ss_pred cccccCCCEEEEeCCCChhHHHHHHHHHcCCcEEEEEeCCCCcEEEEEEhhhhcc
Q psy4847 47 DVMTKLEDVYMLSYDAILDFETVSEIMKSGYSRIPVYEDRRTNIVTMFYIKDLAL 101 (396)
Q Consensus 47 dIMtp~~dv~~l~~d~~l~~e~i~~i~~~g~sriPV~~~~~~~IVGiL~vkDLl~ 101 (396)
++|.+ ++.+++.++++. ++++.|.+++..++||++++ ++++|+|+..||+.
T Consensus 75 ~~~~~--~~~~v~~~~~l~-~a~~~~~~~~~~~l~Vvd~~-~~~~Giit~~dil~ 125 (126)
T cd04642 75 GVKSR--PLITCTPSSTLK-EVITKLVANKVHRVWVVDEE-GKPIGVITLTDIIS 125 (126)
T ss_pred ccccC--CCeEECCCCcHH-HHHHHHHHhCCcEEEEECCC-CCEEEEEEHHHHhc
Confidence 45543 478899999999 99999999999999999765 78999999999864
No 185
>TIGR03415 ABC_choXWV_ATP choline ABC transporter, ATP-binding protein. Members of this protein family are the ATP-binding subunit of a three-protein transporter. This family belongs, more broadly, to the family of proline and glycine-betaine transporters, but members have been identified by direct characterization and by bioinformatic means as choline transporters. Many species have several closely-related members of this family, probably with variable abilities to act additionally on related quaternary amines.
Probab=96.38 E-value=0.0097 Score=60.94 Aligned_cols=109 Identities=16% Similarity=0.143 Sum_probs=73.7
Q ss_pred ccccccccccccCCCEEEEeCCCChhHHHHHHHHHcCCcEEEEEeCCCCcEEEEEEhhhhcccCC-ccccchhhhhhhhc
Q psy4847 40 LRRKIVGDVMTKLEDVYMLSYDAILDFETVSEIMKSGYSRIPVYEDRRTNIVTMFYIKDLALVDP-DDNTPLKTLCQFYQ 118 (396)
Q Consensus 40 l~~~tV~dIMtp~~dv~~l~~d~~l~~e~i~~i~~~g~sriPV~~~~~~~IVGiL~vkDLl~~~~-~~~~~l~~v~~~~~ 118 (396)
.+=.++++||.|...+ ...+.+ . ++ .+++.+.+.|++. |+++..+...+.. .....+.++ .
T Consensus 271 ~~~l~a~~~m~~~~~~--~~~~~~-~--~~---~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~----~ 332 (382)
T TIGR03415 271 LNVLTARSLMRPLTDL--EHVDGG-W--CV---SDRRDTWLFTIDK------QVRRRDAKLPVQAWAAEQEVESL----E 332 (382)
T ss_pred ccceeHHHHhcccccc--cccCcc-h--hh---hhcccceeEeecc------ceecccchHhHhhcccccchhhh----c
Confidence 4556889999765332 222222 1 22 2377888888754 7777777643211 111234442 3
Q ss_pred CCceEEcCCCCHHHHHHHHHhcCCceEEEEEEeCCCCCCCCCCceeeeecHHHHHHHHH
Q psy4847 119 NSCYFVFEDTTLDVLLKQFKEGIKGHMAFVHRVNNEGEGDPFYETVGLITLEDVIEELI 177 (396)
Q Consensus 119 ~~v~~V~~dt~L~~~L~~f~~~~~~h~avV~~~~~~~~~De~g~~vGIVTleDIiEeli 177 (396)
+..+.|+++++|.+++..+... ..++++| |+ |+++|+|+..+|+.+|.
T Consensus 333 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~v~---------~~-~~~~g~~~~~~~~~~~~ 380 (382)
T TIGR03415 333 AAPTVINPDTLMRDVLAARHRT-GGAILLV---------EN-GRIVGVIGDDNIYHALL 380 (382)
T ss_pred ccCcccCCCCcHHHHHHHHhcC-CCCeEEe---------eC-CeEEEEEeHHHHHHHHh
Confidence 6788999999999999999884 5666655 65 99999999999999986
No 186
>cd04588 CBS_pair_CAP-ED_DUF294_assoc_arch This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the archaeal CAP_ED (cAMP receptor protein effector domain) family of transcription factors and the DUF294 domain. Members of CAP_ED, include CAP which binds cAMP, FNR (fumarate and nitrate reductase) which uses an iron-sulfur cluster to sense oxygen, and CooA a heme containing CO sensor. In all cases binding of the effector leads to conformational changes and the ability to activate transcription. DUF294 is a putative nucleotidyltransferase with a conserved DxD motif. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site.
Probab=96.38 E-value=0.0074 Score=48.84 Aligned_cols=55 Identities=29% Similarity=0.318 Sum_probs=47.6
Q ss_pred cccccccccCCCEEEEeCCCChhHHHHHHHHHcCCcEEEEEeCCCCcEEEEEEhhhhcc
Q psy4847 43 KIVGDVMTKLEDVYMLSYDAILDFETVSEIMKSGYSRIPVYEDRRTNIVTMFYIKDLAL 101 (396)
Q Consensus 43 ~tV~dIMtp~~dv~~l~~d~~l~~e~i~~i~~~g~sriPV~~~~~~~IVGiL~vkDLl~ 101 (396)
.++.++|.+ .+..++.+.++. ++++.+.+.+...+||++++ ++++|+|+.+|++.
T Consensus 55 ~~v~~~~~~--~~~~v~~~~~~~-~~~~~~~~~~~~~~~V~~~~-~~~~G~i~~~dl~~ 109 (110)
T cd04588 55 AKVKDVMTK--DVITIDEDEQLY-DAIRLMNKHNVGRLIVTDDE-GRPVGIITRTDILR 109 (110)
T ss_pred cCHHHHhcC--CceEECCCCCHH-HHHHHHHhcCCCEEEEECCC-CCEEEEEEhHHhhc
Confidence 568889864 478899999999 99999999999999999765 78999999999863
No 187
>smart00116 CBS Domain in cystathionine beta-synthase and other proteins. Domain present in all 3 forms of cellular life. Present in two copies in inosine monophosphate dehydrogenase, of which one is disordered in the crystal structure [3]. A number of disease states are associated with CBS-containing proteins including homocystinuria, Becker's and Thomsen disease.
Probab=96.38 E-value=0.0078 Score=40.37 Aligned_cols=45 Identities=24% Similarity=0.433 Sum_probs=38.7
Q ss_pred EEEEeCCCChhHHHHHHHHHcCCcEEEEEeCCCCcEEEEEEhhhhcc
Q psy4847 55 VYMLSYDAILDFETVSEIMKSGYSRIPVYEDRRTNIVTMFYIKDLAL 101 (396)
Q Consensus 55 v~~l~~d~~l~~e~i~~i~~~g~sriPV~~~~~~~IVGiL~vkDLl~ 101 (396)
+..++.++++. +++..+.+.++..+||++++ ++++|+++.+++..
T Consensus 2 ~~~~~~~~~~~-~~~~~~~~~~~~~~~v~~~~-~~~~g~i~~~~l~~ 46 (49)
T smart00116 2 VVTVSPDTTLE-EALELLREHGIRRLPVVDEE-GRLVGIVTRRDIIK 46 (49)
T ss_pred ceEecCCCcHH-HHHHHHHHhCCCcccEECCC-CeEEEEEEHHHHHH
Confidence 35678888898 99999999999999999765 78999999999863
No 188
>cd04632 CBS_pair_19 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=96.32 E-value=0.013 Score=48.95 Aligned_cols=49 Identities=18% Similarity=0.200 Sum_probs=41.7
Q ss_pred CceEEcCCCCHHHHHHHHHhcCCceEEEEEEeCCCCCCCCCCceeeeecHHHHHHHHH
Q psy4847 120 SCYFVFEDTTLDVLLKQFKEGIKGHMAFVHRVNNEGEGDPFYETVGLITLEDVIEELI 177 (396)
Q Consensus 120 ~v~~V~~dt~L~~~L~~f~~~~~~h~avV~~~~~~~~~De~g~~vGIVTleDIiEeli 177 (396)
++..+.+++++.++++.|.+. +.+.++|+ |+.|+++|+||..|+++.+.
T Consensus 2 ~~~~i~~~~~~~~~~~~~~~~-~~~~~~Vv--------~~~~~~~G~it~~dl~~~~~ 50 (128)
T cd04632 2 DVITVREDDSVGKAINVLREH-GISRLPVV--------DDNGKLTGIVTRHDIVDFVV 50 (128)
T ss_pred CceEeCCCCCHHHHHHHHHHc-CCCEEEEE--------CCCCcEEEEEEHHHHHHHHh
Confidence 456899999999999999985 66677777 77799999999999998764
No 189
>cd04634 CBS_pair_21 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=96.27 E-value=0.0079 Score=51.97 Aligned_cols=56 Identities=29% Similarity=0.405 Sum_probs=48.8
Q ss_pred cccccccccccCCCEEEEeCCCChhHHHHHHHHHcCCcEEEEEeCCCCcEEEEEEhhhhcc
Q psy4847 41 RRKIVGDVMTKLEDVYMLSYDAILDFETVSEIMKSGYSRIPVYEDRRTNIVTMFYIKDLAL 101 (396)
Q Consensus 41 ~~~tV~dIMtp~~dv~~l~~d~~l~~e~i~~i~~~g~sriPV~~~~~~~IVGiL~vkDLl~ 101 (396)
...++.++|.+. +.+++.++++. +++..+.+.++.++||++. ++++|+++.+|++.
T Consensus 87 ~~~~v~~~~~~~--~~~v~~~~~l~-~a~~~~~~~~~~~~~Vv~~--~~~~Gvvt~~dl~~ 142 (143)
T cd04634 87 GKMKVRDIMTKK--VITISPDASIE-DAAELMVRHKIKRLPVVED--GRLVGIVTRGDIIE 142 (143)
T ss_pred hcCCHHHHcCCC--CeEECCCCcHH-HHHHHHHHcCCCEEEEEEC--CEEEEEEEHHHhhc
Confidence 456788999754 78999999999 9999999999999999976 78999999999863
No 190
>cd04591 CBS_pair_EriC_assoc_euk_bac This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the EriC CIC-type chloride channels in eukaryotes and bacteria. These ion channels are proteins with a seemingly simple task of allowing the passive flow of chloride ions across biological membranes. CIC-type chloride channels come from all kingdoms of life, have several gene families, and can be gated by voltage. The members of the CIC-type chloride channel are double-barreled: two proteins forming homodimers at a broad interface formed by four helices from each protein. The two pores are not found at this interface, but are completely contained within each subunit, as deduced from the mutational analyses, unlike many other channels, in which four or five identical or structurally related subunits jointly form one pore. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS
Probab=96.26 E-value=0.01 Score=48.57 Aligned_cols=49 Identities=18% Similarity=0.218 Sum_probs=43.0
Q ss_pred ccccCCCEEEEeCCCChhHHHHHHHHHcCCcEEEEEeCCCCcEEEEEEhhhhcc
Q psy4847 48 VMTKLEDVYMLSYDAILDFETVSEIMKSGYSRIPVYEDRRTNIVTMFYIKDLAL 101 (396)
Q Consensus 48 IMtp~~dv~~l~~d~~l~~e~i~~i~~~g~sriPV~~~~~~~IVGiL~vkDLl~ 101 (396)
+|++. +.+++.++++. ++++.|.+++...+||+++ ++++|+|+.+||+.
T Consensus 56 ~m~~~--~~~v~~~~~l~-~~~~~~~~~~~~~~pVv~~--~~~~Gvvt~~dl~~ 104 (105)
T cd04591 56 YIDPS--PFTVSPRTSLE-KVHQLFRKLGLRHLLVVDE--GRLVGIITRKDLLK 104 (105)
T ss_pred hccCC--CceECCCCcHH-HHHHHHHHcCCCEEEEEEC--CeEEEEEEhhhhhc
Confidence 78753 77899999999 9999999999999999953 78999999999864
No 191
>TIGR01303 IMP_DH_rel_1 IMP dehydrogenase family protein. This model represents a family of proteins, often annotated as a putative IMP dehydrogenase, related to IMP dehydrogenase and GMP reductase and restricted to the high GC Gram-positive bacteria. All species in which a member is found so far (Corynebacterium glutamicum, Mycobacterium tuberculosis, Streptomyces coelicolor, etc.) also have IMP dehydrogenase as described by TIGRFAMs entry TIGR01302.
Probab=96.24 E-value=0.0065 Score=63.89 Aligned_cols=57 Identities=9% Similarity=0.050 Sum_probs=50.9
Q ss_pred ccccccccccCCCEEEEeCCCChhHHHHHHHHHcCCcEEEEEeCCCCcEEEEEEhhhhccc
Q psy4847 42 RKIVGDVMTKLEDVYMLSYDAILDFETVSEIMKSGYSRIPVYEDRRTNIVTMFYIKDLALV 102 (396)
Q Consensus 42 ~~tV~dIMtp~~dv~~l~~d~~l~~e~i~~i~~~g~sriPV~~~~~~~IVGiL~vkDLl~~ 102 (396)
..+|+++|++. +++++.++++. ++++.|.+++...+||++++ ++++|+|+.+||+..
T Consensus 145 ~~~V~dIMt~~--litv~~~~sL~-eAl~lM~~~~i~~LPVVD~~-g~LvGIIT~~DLl~~ 201 (475)
T TIGR01303 145 FTQVRDIMSTD--LVTAPADTEPR-KAFDLLEHAPRDVAPLVDAD-GTLAGILTRTGALRA 201 (475)
T ss_pred CCCHHHHccCC--ceEeCCCCcHH-HHHHHHHHcCCCEEEEEcCC-CeEEEEEEHHHHHHH
Confidence 35799999964 88999999999 99999999999999999765 789999999999853
No 192
>PRK07807 inosine 5-monophosphate dehydrogenase; Validated
Probab=96.24 E-value=0.0067 Score=63.87 Aligned_cols=57 Identities=18% Similarity=0.134 Sum_probs=51.0
Q ss_pred ccccccccccCCCEEEEeCCCChhHHHHHHHHHcCCcEEEEEeCCCCcEEEEEEhhhhccc
Q psy4847 42 RKIVGDVMTKLEDVYMLSYDAILDFETVSEIMKSGYSRIPVYEDRRTNIVTMFYIKDLALV 102 (396)
Q Consensus 42 ~~tV~dIMtp~~dv~~l~~d~~l~~e~i~~i~~~g~sriPV~~~~~~~IVGiL~vkDLl~~ 102 (396)
...|.++|++ ++.+++.++++. +++..|.+++...+||++++ ++++|+|+.+||+..
T Consensus 147 ~~~V~diMt~--~~itV~~d~sL~-eAl~lM~~~~i~~LPVVD~~-g~lvGIIT~~DIl~~ 203 (479)
T PRK07807 147 FTQVRDVMST--DLVTLPAGTDPR-EAFDLLEAARVKLAPVVDAD-GRLVGVLTRTGALRA 203 (479)
T ss_pred CCCHHHhccC--CceEECCCCcHH-HHHHHHHhcCCCEEEEEcCC-CeEEEEEEHHHHHHH
Confidence 3569999996 488999999999 99999999999999999765 799999999999864
No 193
>COG2905 Predicted signal-transduction protein containing cAMP-binding and CBS domains [Signal transduction mechanisms]
Probab=96.12 E-value=0.0068 Score=63.90 Aligned_cols=75 Identities=17% Similarity=0.271 Sum_probs=58.6
Q ss_pred cccCCCCHHHHHHHHHHhc---ccccccccccccCCCEEEEeCCCChhHHHHHHHHHcCCcEEEEEeCCCCcEEEEEEhh
Q psy4847 21 TEFNDLEKDEVNIISGALE---LRRKIVGDVMTKLEDVYMLSYDAILDFETVSEIMKSGYSRIPVYEDRRTNIVTMFYIK 97 (396)
Q Consensus 21 ~e~~~l~~~E~~~i~~ale---l~~~tV~dIMtp~~dv~~l~~d~~l~~e~i~~i~~~g~sriPV~~~~~~~IVGiL~vk 97 (396)
.+.|.+++ .++...++. -.+.+|++|||.. +++++..+.+= ++|-.|.+.+..++||.++ |+++|+|+..
T Consensus 191 ~~~GIvT~--~dl~~~v~~~g~~~~~~V~evmT~p--~~svd~~~~~f-eAml~m~r~~I~hl~V~e~--gq~~Gilt~~ 263 (610)
T COG2905 191 PLLGIVTR--KDLRSRVIADGRSKTQKVSEVMTSP--VISVDRGDFLF-EAMLMMLRNRIKHLPVTED--GQPLGILTLT 263 (610)
T ss_pred Cccceeeh--HHHHHHHHhcCCCcccchhhhhccC--ceeecCcchHH-HHHHHHHHhCCceeeeecC--CeeeEEeeHH
Confidence 34444443 344455543 3467899999955 89999987775 9999999999999999976 7999999999
Q ss_pred hhccc
Q psy4847 98 DLALV 102 (396)
Q Consensus 98 DLl~~ 102 (396)
|++..
T Consensus 264 dIl~l 268 (610)
T COG2905 264 DILRL 268 (610)
T ss_pred HHHHh
Confidence 99743
No 194
>cd02205 CBS_pair The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic generali
Probab=95.99 E-value=0.028 Score=44.49 Aligned_cols=49 Identities=24% Similarity=0.140 Sum_probs=41.7
Q ss_pred CceEEcCCCCHHHHHHHHHhcCCceEEEEEEeCCCCCCCCCCceeeeecHHHHHHHHH
Q psy4847 120 SCYFVFEDTTLDVLLKQFKEGIKGHMAFVHRVNNEGEGDPFYETVGLITLEDVIEELI 177 (396)
Q Consensus 120 ~v~~V~~dt~L~~~L~~f~~~~~~h~avV~~~~~~~~~De~g~~vGIVTleDIiEeli 177 (396)
++.+++.++++.++++.|.+. +.+.++|+ |+.++++|+|+..|++..+.
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~-~~~~~~v~--------~~~~~~~G~v~~~~l~~~~~ 50 (113)
T cd02205 2 DVVTVSPDDTVAEALRLMLEH-GISGLPVV--------DDDGRLVGIVTERDLLRALA 50 (113)
T ss_pred CceEecCCCCHHHHHHHHHhc-CCceEEEE--------CCCCCEEEEEeHHHHHHHHH
Confidence 467899999999999999985 55666676 77789999999999998876
No 195
>TIGR00393 kpsF KpsF/GutQ family protein. This model describes a number of closely related proteins with the phosphosugar-binding domain SIS (Sugar ISomerase) followed by two copies of the CBS (named after Cystathionine Beta Synthase) domain. One is GutQ, a protein of the glucitol operon. Another is KpsF, a virulence factor involved in capsular polysialic acid biosynthesis in some pathogenic strains of E. coli.
Probab=95.99 E-value=0.01 Score=56.92 Aligned_cols=51 Identities=20% Similarity=0.236 Sum_probs=44.8
Q ss_pred cccccccccccCCCEEEEeCCCChhHHHHHHHHHcCCcEEEEEeCCCCcEEEEEE
Q psy4847 41 RRKIVGDVMTKLEDVYMLSYDAILDFETVSEIMKSGYSRIPVYEDRRTNIVTMFY 95 (396)
Q Consensus 41 ~~~tV~dIMtp~~dv~~l~~d~~l~~e~i~~i~~~g~sriPV~~~~~~~IVGiL~ 95 (396)
.+.+|+++|.+. +.+++.++++. ++++.|.+++..++||++++ ++++|+|+
T Consensus 218 ~~~~v~~im~~~--~~~v~~~~~l~-~a~~~m~~~~~~~lpVvd~~-g~l~GvI~ 268 (268)
T TIGR00393 218 LKSEVRDFMTLG--PKTFKLDALLL-EALEFLERRKITSLVVVDDH-NKVLGVLH 268 (268)
T ss_pred ccCcHHHhCCCC--CeEECCCCcHH-HHHHHHHHcCCcEEEEECCC-CeEEEEEC
Confidence 356799999865 77899999999 99999999999999999765 68999985
No 196
>KOG0498|consensus
Probab=95.96 E-value=0.012 Score=64.53 Aligned_cols=86 Identities=19% Similarity=0.176 Sum_probs=67.9
Q ss_pred CccccccccCcccceEEEEEeeEEEEEEcC---CcceeecCCccchhhhhcccccccCCCCCCCCCcccccCCCcccccc
Q psy4847 257 PTFKSLKKRNKPVDYFVLILEGRAEVVVGK---ENLVYEAGPFSYFGCQALTQNIGIAESPTNNSSAAQAYGGSLQSVNL 333 (396)
Q Consensus 257 ~~~~~LY~~g~~~d~f~LIL~Grv~V~~G~---e~~~~E~gpfs~~G~~aL~~~~~~~~~~~~~~~~~~~~~~s~~~~~~ 333 (396)
++...|-++|.|.+.++.|..|++++.... +.....+||.++||++.++-.... |
T Consensus 448 ~pge~iireGd~v~~myFI~rG~le~~~~~~g~~~~~~~L~~Gd~~GeEl~~~~~~~---------p------------- 505 (727)
T KOG0498|consen 448 TPGEYIIREGDPVTDMYFIVRGSLESITTDGGGFFVVAILGPGDFFGEELLTWCLDL---------P------------- 505 (727)
T ss_pred CCCCeEEecCCccceeEEEEeeeEEEEEccCCceEEEEEecCCCccchHHHHHHhcC---------C-------------
Confidence 344569999999999999999999998844 467889999999998888752100 0
Q ss_pred cccCCcccccCcEEEEcCCeEEEEEeHHHHHHHHHHhhhh
Q psy4847 334 DSILRYTFVPDYSVRATTEMFYVKIRRSFYLAAKRATLME 373 (396)
Q Consensus 334 ~~~~~~~~~PD~sv~~~~d~~~~~Itr~~Y~~al~as~~~ 373 (396)
+-+||||++.|+..++.+..+.+.+..=+..
T Consensus 506 ---------~t~TVralt~~el~~L~~~dL~~V~~~f~~~ 536 (727)
T KOG0498|consen 506 ---------QTRTVRALTYCELFRLSADDLKEVLQQFRRL 536 (727)
T ss_pred ---------CCceeehhhhhhHHhccHHHHHHHHHHhHHH
Confidence 1249999999999999999888776654433
No 197
>KOG0614|consensus
Probab=95.92 E-value=0.0087 Score=62.68 Aligned_cols=90 Identities=22% Similarity=0.225 Sum_probs=75.5
Q ss_pred CCCccccccccCcccceEEEEEeeEEEEEEcCCcceeecCCccchhhhhcccccccCCCCCCCCCcccccCCCccccccc
Q psy4847 255 QKPTFKSLKKRNKPVDYFVLILEGRAEVVVGKENLVYEAGPFSYFGCQALTQNIGIAESPTNNSSAAQAYGGSLQSVNLD 334 (396)
Q Consensus 255 ~~~~~~~LY~~g~~~d~f~LIL~Grv~V~~G~e~~~~E~gpfs~~G~~aL~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~ 334 (396)
...+..++.+.|+|.+..+.+-+|+++|.-| +.+.--.|||+.||+-|..-+. .+.+
T Consensus 181 ~~~~gs~IIrege~Gs~~yV~aeG~~~V~~~-g~ll~~m~~gtvFGELAILync--tRtA-------------------- 237 (732)
T KOG0614|consen 181 EYRAGSWIIREGEPGSHLYVSAEGELQVSRE-GKLLGKMGAGTVFGELAILYNC--TRTA-------------------- 237 (732)
T ss_pred cccCCcEEEecCCCCceEEEeecceEEEeeC-CeeeeccCCchhhhHHHHHhCC--cchh--------------------
Confidence 3456678999999999999999999999875 4567889999999999988632 1111
Q ss_pred ccCCcccccCcEEEEcCCeEEEEEeHHHHHHHHHHhhhhhccCC
Q psy4847 335 SILRYTFVPDYSVRATTEMFYVKIRRSFYLAAKRATLMEKSKKS 378 (396)
Q Consensus 335 ~~~~~~~~PD~sv~~~~d~~~~~Itr~~Y~~al~as~~~~~~~~ 378 (396)
||+|+++|+.-.|-|+-|++..|-|-+++..+.
T Consensus 238 -----------sV~alt~~~lWaidR~vFq~IM~~tg~~r~~~~ 270 (732)
T KOG0614|consen 238 -----------SVRALTDVRLWAIDREVFQAIMMRTGLERHEQY 270 (732)
T ss_pred -----------hhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 899999999999999999999999988876554
No 198
>COG4175 ProV ABC-type proline/glycine betaine transport system, ATPase component [Amino acid transport and metabolism]
Probab=95.89 E-value=0.018 Score=57.35 Aligned_cols=121 Identities=17% Similarity=0.166 Sum_probs=83.7
Q ss_pred HHHHHHhcccccccccccccCCCEEEEeCCCChhHHHHHHHHHcCCcEEEEEeCCCCcEEEEEEhhhhcccCCccccchh
Q psy4847 32 NIISGALELRRKIVGDVMTKLEDVYMLSYDAILDFETVSEIMKSGYSRIPVYEDRRTNIVTMFYIKDLALVDPDDNTPLK 111 (396)
Q Consensus 32 ~~i~~alel~~~tV~dIMtp~~dv~~l~~d~~l~~e~i~~i~~~g~sriPV~~~~~~~IVGiL~vkDLl~~~~~~~~~l~ 111 (396)
..+.++=..+=.++.+||.+ .+.-....+......+...+...+.+.+-+++. .++.+|++...++...
T Consensus 263 ~Fv~~v~~~~VltA~~IM~~-~~~~~~~~~~~~~~~al~~~~~~~~~~~~~~~~-~~~~~g~v~~~~~~~~--------- 331 (386)
T COG4175 263 DFVRNVDRSRVLTAKDIMRR-PDLLIRKTPGDGPRVALKLLRDEGREYGYAVDR-GNKFVGVVSIDSLVKA--------- 331 (386)
T ss_pred HHHhcCChhheeeHHHhhcc-cccccccccccccchhhhhhhhccchhhHHHhc-cCceeeEEeccchhcc---------
Confidence 44444444555689999985 222222222222114566666666555556653 3569999987666432
Q ss_pred hhhhhhcCCceEEcCCCCHHHHHHHHHhcCCceEEEEEEeCCCCCCCCCCceeeeecHHHHHHHHH
Q psy4847 112 TLCQFYQNSCYFVFEDTTLDVLLKQFKEGIKGHMAFVHRVNNEGEGDPFYETVGLITLEDVIEELI 177 (396)
Q Consensus 112 ~v~~~~~~~v~~V~~dt~L~~~L~~f~~~~~~h~avV~~~~~~~~~De~g~~vGIVTleDIiEeli 177 (396)
.+ ..++..|..++++.+++....+. ..++++| |+.|+++|+|+...++++|.
T Consensus 332 -~~---~~~~~~v~~d~~~~~~~~~~~~~-~~p~aVv---------de~~r~vG~i~~~~vl~aL~ 383 (386)
T COG4175 332 -AL---IDDVLTVDADTPLSEILARIRQA-PCPVAVV---------DEDGRYVGIISRGELLEALA 383 (386)
T ss_pred -cc---cccccccCccchHHHHHHHHhcC-CCceeEE---------cCCCcEEEEecHHHHHHHHh
Confidence 11 35678899999999999999985 7888887 88999999999999999986
No 199
>cd04638 CBS_pair_25 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=95.88 E-value=0.018 Score=46.39 Aligned_cols=55 Identities=20% Similarity=0.302 Sum_probs=46.8
Q ss_pred ccccccccccCCCEEEEeCCCChhHHHHHHHHHcCCcEEEEEeCCCCcEEEEEEhhhhcc
Q psy4847 42 RKIVGDVMTKLEDVYMLSYDAILDFETVSEIMKSGYSRIPVYEDRRTNIVTMFYIKDLAL 101 (396)
Q Consensus 42 ~~tV~dIMtp~~dv~~l~~d~~l~~e~i~~i~~~g~sriPV~~~~~~~IVGiL~vkDLl~ 101 (396)
+..+.++|.+. +.+++.+.++. +++..+.+++...+||+++ ++++|+|+.+|++.
T Consensus 51 ~~~~~~~~~~~--~~~v~~~~~l~-~~~~~~~~~~~~~~~Vvd~--~~~~G~it~~d~~~ 105 (106)
T cd04638 51 EEQLALLMTRD--PPTVSPDDDVK-EAAKLMVENNIRRVPVVDD--GKLVGIVTVADIVR 105 (106)
T ss_pred cchHHHHhcCC--CceECCCCCHH-HHHHHHHHcCCCEEEEEEC--CEEEEEEEHHHhhc
Confidence 34678888754 67889999998 9999999999999999974 68999999999863
No 200
>cd04590 CBS_pair_CorC_HlyC_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the CorC_HlyC domain. CorC_HlyC is a transporter associated domain. This small domain is found in Na+/H+ antiporters, in proteins involved in magnesium and cobalt efflux, and in association with some proteins of unknown function. The function of the CorC_HlyC domain is uncertain but it might be involved in modulating transport of ion substrates. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role,
Probab=95.86 E-value=0.033 Score=45.06 Aligned_cols=49 Identities=20% Similarity=0.228 Sum_probs=40.3
Q ss_pred CceEEcCCCCHHHHHHHHHhcCCceEEEEEEeCCCCCCCCC-CceeeeecHHHHHHHHH
Q psy4847 120 SCYFVFEDTTLDVLLKQFKEGIKGHMAFVHRVNNEGEGDPF-YETVGLITLEDVIEELI 177 (396)
Q Consensus 120 ~v~~V~~dt~L~~~L~~f~~~~~~h~avV~~~~~~~~~De~-g~~vGIVTleDIiEeli 177 (396)
.+.++++++++.++++.|.+. +...++|+ |+. |+++|++|..|++..+.
T Consensus 2 ~~~~i~~~~~i~~a~~~~~~~-~~~~~~v~--------~~~~~~~~G~v~~~~l~~~~~ 51 (111)
T cd04590 2 DIVALDADDTLEEILELIAES-GHSRFPVY--------DGDLDNIIGVVHVKDLLRALA 51 (111)
T ss_pred ceEEEcCCCCHHHHHHHHhhC-CCceEEEE--------CCCCceEEEEEEHHHHHHHHH
Confidence 467899999999999999874 44455555 666 89999999999999875
No 201
>cd04609 CBS_pair_PALP_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the pyridoxal-phosphate (PALP) dependent enzyme domain upstream. The vitamin B6 complex comprises pyridoxine, pyridoxal, and pyridoxamine, as well as the 5'-phosphate esters of pyridoxal (PALP) and pyridoxamine, the last two being the biologically active coenzyme derivatives. The members of the PALP family are principally involved in the biosynthesis of amino acids and amino acid-derived metabolites, but they are also found in the biosynthetic pathways of amino sugars and other amine-containing compounds. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a pote
Probab=95.74 E-value=0.029 Score=45.01 Aligned_cols=48 Identities=25% Similarity=0.237 Sum_probs=41.1
Q ss_pred CceEEcCCCCHHHHHHHHHhcCCceEEEEEEeCCCCCCCCCCceeeeecHHHHHHHHH
Q psy4847 120 SCYFVFEDTTLDVLLKQFKEGIKGHMAFVHRVNNEGEGDPFYETVGLITLEDVIEELI 177 (396)
Q Consensus 120 ~v~~V~~dt~L~~~L~~f~~~~~~h~avV~~~~~~~~~De~g~~vGIVTleDIiEeli 177 (396)
++.++.+++++.+++..|.+. ..+.++|+ |+ |+++|+||..|+...+.
T Consensus 2 ~~~~v~~~~~~~~~~~~~~~~-~~~~~~V~--------~~-~~~~G~v~~~dl~~~~~ 49 (110)
T cd04609 2 DVVSVAPDDTVSQAIERMREY-GVSQLPVV--------DD-GRVVGSIDESDLLDALI 49 (110)
T ss_pred CcEEECCCCcHHHHHHHHHHc-CCceeeEe--------eC-CeeEEEEeHHHHHHHHh
Confidence 467899999999999999985 56667777 66 89999999999998775
No 202
>TIGR01302 IMP_dehydrog inosine-5'-monophosphate dehydrogenase. This model describes a rather tightly conserved cluster of IMP dehydrogenase sequences, many of which are characterized. The model excludes two related families of proteins proposed also to be IMP dehydrogenases, but without characterized members. These are related families are the subject of separate models.
Probab=95.72 E-value=0.016 Score=60.55 Aligned_cols=59 Identities=24% Similarity=0.407 Sum_probs=52.0
Q ss_pred cccccccccccCCCEEEEeCCCChhHHHHHHHHHcCCcEEEEEeCCCCcEEEEEEhhhhccc
Q psy4847 41 RRKIVGDVMTKLEDVYMLSYDAILDFETVSEIMKSGYSRIPVYEDRRTNIVTMFYIKDLALV 102 (396)
Q Consensus 41 ~~~tV~dIMtp~~dv~~l~~d~~l~~e~i~~i~~~g~sriPV~~~~~~~IVGiL~vkDLl~~ 102 (396)
.+.+++++|++ .++.+++.+.++. ++++.|.+++...+||++++ ++++|+|+.+||+..
T Consensus 141 ~~~~V~dvm~~-~~~~~V~~~~sl~-eal~~m~~~~~~~lpVVDe~-G~lvGiVT~~DIl~~ 199 (450)
T TIGR01302 141 KGKPVSEVMTR-EEVITVPEGIDLE-EALKVLHEHRIEKLPVVDKN-GELVGLITMKDIVKR 199 (450)
T ss_pred CCCCHHHhhCC-CCCEEECCCCcHH-HHHHHHHHcCCCeEEEEcCC-CcEEEEEEhHHhhhc
Confidence 35689999984 2478999999999 99999999999999999875 899999999999854
No 203
>PRK01862 putative voltage-gated ClC-type chloride channel ClcB; Provisional
Probab=95.71 E-value=0.015 Score=62.54 Aligned_cols=57 Identities=21% Similarity=0.262 Sum_probs=50.1
Q ss_pred ccccccccccCCCEEEEeCCCChhHHHHHHHHHcCCcEEEEEeCCC-CcEEEEEEhhhhcc
Q psy4847 42 RKIVGDVMTKLEDVYMLSYDAILDFETVSEIMKSGYSRIPVYEDRR-TNIVTMFYIKDLAL 101 (396)
Q Consensus 42 ~~tV~dIMtp~~dv~~l~~d~~l~~e~i~~i~~~g~sriPV~~~~~-~~IVGiL~vkDLl~ 101 (396)
+.++.|+|++. +.++++++++. ++++.|.+++..++||++++. ++++|+|+.+|++.
T Consensus 511 ~~~v~dim~~~--~~~v~~d~~L~-~al~~m~~~~~~~lpVVd~~~~~~liGvIt~~DIl~ 568 (574)
T PRK01862 511 DKTAADYAHTP--FPLLTPDMPLG-DALEHFMAFQGERLPVVESEASPTLAGVVYKTSLLD 568 (574)
T ss_pred cchHHHhccCC--CeeECCCCCHH-HHHHHHHhcCCCeeeeEeCCCCCeEEEEEEHHHHHH
Confidence 46799999864 77899999999 999999999999999998653 47999999999975
No 204
>cd04598 CBS_pair_GGDEF_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with the GGDEF (DiGuanylate-Cyclase (DGC)) domain. The GGDEF domain has been suggested to be homologous to the adenylyl cyclase catalytic domain and is thought to be involved in regulating cell surface adhesiveness in bacteria. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=95.65 E-value=0.027 Score=46.17 Aligned_cols=48 Identities=31% Similarity=0.293 Sum_probs=39.7
Q ss_pred CceEEcCCCCHHHHHHHHHhcCC-ceEEEEEEeCCCCCCCCCCceeeeecHHHHHHHHH
Q psy4847 120 SCYFVFEDTTLDVLLKQFKEGIK-GHMAFVHRVNNEGEGDPFYETVGLITLEDVIEELI 177 (396)
Q Consensus 120 ~v~~V~~dt~L~~~L~~f~~~~~-~h~avV~~~~~~~~~De~g~~vGIVTleDIiEeli 177 (396)
+++++++++++.++++.|+.. . .+.++|+ |+ |+++|+|+..|++..+.
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~-~~~~~~~Vv--------d~-~~~~G~v~~~~l~~~~~ 50 (119)
T cd04598 2 PAPTVSPDTTVNDVLERFERD-PDLSALAVV--------DD-GRPVGLIMREALMELLS 50 (119)
T ss_pred CcCccCCCCcHHHHHHHHHhC-CCccEEEEE--------EC-CeeEEEEEHHHHHHHHh
Confidence 567889999999999999874 4 4566666 77 99999999999987654
No 205
>PRK15094 magnesium/cobalt efflux protein CorC; Provisional
Probab=95.59 E-value=0.036 Score=54.72 Aligned_cols=91 Identities=13% Similarity=0.155 Sum_probs=66.2
Q ss_pred cccccccccCCCEEEEeCCCChhHHHHHHHHHcCCcEEEEEeCCCCcEEEEEEhhhhccc------CCccccchhhhhhh
Q psy4847 43 KIVGDVMTKLEDVYMLSYDAILDFETVSEIMKSGYSRIPVYEDRRTNIVTMFYIKDLALV------DPDDNTPLKTLCQF 116 (396)
Q Consensus 43 ~tV~dIMtp~~dv~~l~~d~~l~~e~i~~i~~~g~sriPV~~~~~~~IVGiL~vkDLl~~------~~~~~~~l~~v~~~ 116 (396)
.++.++|.|. +.++++.++. ++++.|.+.+...+||+++. |.++|+|+..||+.. +..+...-..+.+
T Consensus 133 ~~l~~l~r~~---~~V~e~~~l~-~~L~~m~~~~~~~a~VvDe~-G~viGiVTleDIle~ivGei~de~d~~~~~~i~~- 206 (292)
T PRK15094 133 FSMDKVLRQA---VVVPESKRVD-RMLKEFRSQRYHMAIVIDEF-GGVSGLVTIEDILELIVGEIEDEYDEEDDIDFRQ- 206 (292)
T ss_pred CCHHHHcCCC---cCcCCCCcHH-HHHHHHHhcCCEEEEEEeCC-CCEEEEeEHHHHHHHHhCCCccccccccccccEE-
Confidence 4588999764 5799999999 99999999999999999865 789999999999742 1111111011211
Q ss_pred hcCCceEEcCCCCHHHHHHHHHh
Q psy4847 117 YQNSCYFVFEDTTLDVLLKQFKE 139 (396)
Q Consensus 117 ~~~~v~~V~~dt~L~~~L~~f~~ 139 (396)
.......|+..++|.++.+.|.-
T Consensus 207 ~~~~~~~v~G~~~l~dl~~~l~~ 229 (292)
T PRK15094 207 LSRHTWTVRALASIEDFNEAFGT 229 (292)
T ss_pred eCCCeEEEEeccCHHHHHHHhCC
Confidence 12335678999999998888743
No 206
>TIGR01137 cysta_beta cystathionine beta-synthase. Members of this family closely resemble cysteine synthase but contain an additional C-terminal CBS domain. The function of any bacterial member included in this family is proposed but not proven.
Probab=95.45 E-value=0.039 Score=57.33 Aligned_cols=55 Identities=15% Similarity=0.076 Sum_probs=45.7
Q ss_pred hhhhcCCceEEcCCCCHHHHHHHHHhcCCceEEEEEEeCCCCCCCCCCceeeeecHHHHHHHHH
Q psy4847 114 CQFYQNSCYFVFEDTTLDVLLKQFKEGIKGHMAFVHRVNNEGEGDPFYETVGLITLEDVIEELI 177 (396)
Q Consensus 114 ~~~~~~~v~~V~~dt~L~~~L~~f~~~~~~h~avV~~~~~~~~~De~g~~vGIVTleDIiEeli 177 (396)
.++|.+++..+.+++++.++++.|.+. +...++|+ |+.++++|+||..|++..+.
T Consensus 338 ~~im~~~~~~v~~~~tl~ea~~~m~~~-~~~~~~Vv--------d~~~~~~Givt~~dl~~~~~ 392 (454)
T TIGR01137 338 KDLHLPAPVTVHPTETVGDAIEILREY-GFDQLPVV--------TEAGKVLGSVTLRELLSALF 392 (454)
T ss_pred HHhCcCCCeEECCCCcHHHHHHHHHHc-CCCEEEEE--------cCCCeEEEEEEHHHHHHHHh
Confidence 334457889999999999999999874 55666777 77789999999999999776
No 207
>KOG1113|consensus
Probab=95.23 E-value=0.046 Score=54.77 Aligned_cols=65 Identities=23% Similarity=0.227 Sum_probs=54.4
Q ss_pred HHHHHHHhcCCCCCCCccccccccCcccceEEEEEeeEEEEEEcCCcceeecCCccchhhhhcccc
Q psy4847 242 SLLDRITQKGTSQQKPTFKSLKKRNKPVDYFVLILEGRAEVVVGKENLVYEAGPFSYFGCQALTQN 307 (396)
Q Consensus 242 ~vL~~Ll~~~~v~~~~~~~~LY~~g~~~d~f~LIL~Grv~V~~G~e~~~~E~gpfs~~G~~aL~~~ 307 (396)
.-+.+++.....+....+..+-..|..+|+|+.|=+|.++|.++ .+...+.+|..+||+-||.-+
T Consensus 136 eq~~~v~dam~~~~v~~G~~Vi~qGdeGd~fYvI~kGt~dVyv~-~~~v~~~~~g~sFGElALmyn 200 (368)
T KOG1113|consen 136 EQLSQVLDAMFEKRVKAGETVIKQGDEGDNFYVIDKGTFDVYVN-GTYVTTYSPGGSFGELALMYN 200 (368)
T ss_pred HHHHHHHHhhceeeecCCcEEEecCCcCCcEEEEecceEEEEEC-CeEEeeeCCCCchhhhHhhhC
Confidence 33666776655555566778999999999999999999999999 556889999999999999974
No 208
>COG3620 Predicted transcriptional regulator with C-terminal CBS domains [Transcription]
Probab=94.84 E-value=0.05 Score=48.97 Aligned_cols=57 Identities=18% Similarity=0.321 Sum_probs=46.6
Q ss_pred chhhhhhhhcCCceEEcCCCCHHHHHHHHHhcCCceEEEEEEeCCCCCCCCCCceeeeecHHHHHHHHHh
Q psy4847 109 PLKTLCQFYQNSCYFVFEDTTLDVLLKQFKEGIKGHMAFVHRVNNEGEGDPFYETVGLITLEDVIEELIQ 178 (396)
Q Consensus 109 ~l~~v~~~~~~~v~~V~~dt~L~~~L~~f~~~~~~h~avV~~~~~~~~~De~g~~vGIVTleDIiEeli~ 178 (396)
..+++| .+|+.+|.++.++.++++.|+..+.++++++ ++ +.++|-||-.||...+..
T Consensus 66 ta~~iM---~spvv~v~pdDsi~~vv~lM~~~g~SQlPVi---------~~-~k~VGsItE~~iv~~~le 122 (187)
T COG3620 66 TAKTIM---HSPVVSVSPDDSISDVVNLMRDKGISQLPVI---------EE-DKVVGSITENDIVRALLE 122 (187)
T ss_pred eHhhhc---cCCeeEECchhhHHHHHHHHHHcCCccCcee---------eC-CeeeeeecHHHHHHHHhc
Confidence 344454 5899999999999999999998655555555 44 899999999999999984
No 209
>TIGR03520 GldE gliding motility-associated protein GldE. Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldC is a protein linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. GldE was discovered because of its adjacency to GldD in F. johnsonii. Overexpression of GldE partially supresses the effects of a GldB point mutant suggesting that GldB and GldE interact. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Not all Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility and in fact some do not appear to express the gliding phenotype.
Probab=94.75 E-value=0.053 Score=56.02 Aligned_cols=93 Identities=12% Similarity=0.111 Sum_probs=66.1
Q ss_pred ccccccccccCCCEEEEeCCCChhHHHHHHHHHcCCcEEEEEeCCCCcEEEEEEhhhhcccC--C-cccc-chhhhhhhh
Q psy4847 42 RKIVGDVMTKLEDVYMLSYDAILDFETVSEIMKSGYSRIPVYEDRRTNIVTMFYIKDLALVD--P-DDNT-PLKTLCQFY 117 (396)
Q Consensus 42 ~~tV~dIMtp~~dv~~l~~d~~l~~e~i~~i~~~g~sriPV~~~~~~~IVGiL~vkDLl~~~--~-~~~~-~l~~v~~~~ 117 (396)
..+++++|+| +..++++.++. ++++.|.+++....+|+|+. |.++|+|+..|++..- . .+.. +-...+.-.
T Consensus 254 ~~~l~~~~~~---~~~Vpe~~~l~-~ll~~m~~~~~~~aiVvDE~-G~~~GiVT~eDileeivgei~de~d~~~~~i~~~ 328 (408)
T TIGR03520 254 NFDWQSLLRE---PYFVPENKKLD-DLLRDFQEKKNHLAIVVDEY-GGTSGLVTLEDIIEEIVGDISDEFDDEDLIYSKI 328 (408)
T ss_pred CCCHHHHcCC---CeEeCCCCcHH-HHHHHHHhcCceEEEEEcCC-CCEEEEEEHHHHHHHHhCCCCCcCCcCccceEEe
Confidence 3457889975 57899999999 99999999999999999764 7899999999997421 0 1110 111111101
Q ss_pred cCCceEEcCCCCHHHHHHHHHh
Q psy4847 118 QNSCYFVFEDTTLDVLLKQFKE 139 (396)
Q Consensus 118 ~~~v~~V~~dt~L~~~L~~f~~ 139 (396)
......|+..+++.++.+.|.-
T Consensus 329 ~~~~~~v~G~~~l~~l~~~l~~ 350 (408)
T TIGR03520 329 DDNNYVFEGKTSLKDFYKILKL 350 (408)
T ss_pred CCCeEEEEeccCHHHHHHHhCC
Confidence 2334667779999999998854
No 210
>PRK11832 putative DNA-binding transcriptional regulator; Provisional
Probab=92.94 E-value=0.8 Score=43.09 Aligned_cols=94 Identities=12% Similarity=-0.012 Sum_probs=63.2
Q ss_pred HHHHHHHhcCCCCCCCccccc-cccCcccceEEEEEeeEEEEEEcCCcceeecCCccchhhhhcccccccCCCCCCCCCc
Q psy4847 242 SLLDRITQKGTSQQKPTFKSL-KKRNKPVDYFVLILEGRAEVVVGKENLVYEAGPFSYFGCQALTQNIGIAESPTNNSSA 320 (396)
Q Consensus 242 ~vL~~Ll~~~~v~~~~~~~~L-Y~~g~~~d~f~LIL~Grv~V~~G~e~~~~E~gpfs~~G~~aL~~~~~~~~~~~~~~~~ 320 (396)
.++..|..++.....++.+.+ |....--+.+++|++|.|.+..+..-+...+.+-..||......
T Consensus 13 ~L~~~L~~~g~~~~~~~~~~~i~~~~~~~~~~~ll~~G~vsirr~d~ll~~t~~aP~IlGl~~~~~-------------- 78 (207)
T PRK11832 13 KLDKCLSRYGTRFEFNNEKQVIFSSDVNNEDTFVILEGVISLRREENVLIGITQAPYIMGLADGLM-------------- 78 (207)
T ss_pred HHHHHhhccCCeEecCCCcEEeccccCCCceEEEEEeceEEEEecCCeEEEeccCCeEeecccccC--------------
Confidence 566777777776666666654 65555557899999999999876544443333333344322111
Q ss_pred ccccCCCcccccccccCCcccccCcEEEEcCCeEEEEEeHHHHHHHHH
Q psy4847 321 AQAYGGSLQSVNLDSILRYTFVPDYSVRATTEMFYVKIRRSFYLAAKR 368 (396)
Q Consensus 321 ~~~~~~s~~~~~~~~~~~~~~~PD~sv~~~~d~~~~~Itr~~Y~~al~ 368 (396)
.--+.|..+|.++|....|+++.+.+.+.
T Consensus 79 -------------------~~~~~~~l~ae~~c~~~~i~~~~~~~iie 107 (207)
T PRK11832 79 -------------------KNDIPYKLISEGNCTGYHLPAKQTITLIE 107 (207)
T ss_pred -------------------CCCceEEEEEcCccEEEEeeHHHHHHHHH
Confidence 01126899999999999999999888764
No 211
>COG2239 MgtE Mg/Co/Ni transporter MgtE (contains CBS domain) [Inorganic ion transport and metabolism]
Probab=92.84 E-value=0.1 Score=54.52 Aligned_cols=59 Identities=19% Similarity=0.241 Sum_probs=52.7
Q ss_pred ccccccccccccCCCEEEEeCCCChhHHHHHHHHHcCCcEEEEEeCCCCcEEEEEEhhhhccc
Q psy4847 40 LRRKIVGDVMTKLEDVYMLSYDAILDFETVSEIMKSGYSRIPVYEDRRTNIVTMFYIKDLALV 102 (396)
Q Consensus 40 l~~~tV~dIMtp~~dv~~l~~d~~l~~e~i~~i~~~g~sriPV~~~~~~~IVGiL~vkDLl~~ 102 (396)
-.+..++++|.+. ++.+..++... ++...+.+++....||++++ ++++|+++..|++.+
T Consensus 193 ~~~~~i~~im~~~--~~~V~~~~dqe-evA~~~~~ydl~a~PVVd~~-~~LiG~itiDDiidv 251 (451)
T COG2239 193 EPDELLKDLMEDD--VVSVLADDDQE-EVARLFEKYDLLAVPVVDED-NRLIGIITIDDIIDV 251 (451)
T ss_pred CcHhHHHHHhccc--ceeecccCCHH-HHHHHHHHhCCeecceECCC-CceeeeeeHHHHHHH
Confidence 4678899999876 88999999999 99999999999999999876 799999999999753
No 212
>TIGR01186 proV glycine betaine/L-proline transport ATP binding subunit. This model describes the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Functionally, this transport system is involved in osmoregulation. Under conditions of stress, the organism recruits these transport system to accumulate glycine betaine and other solutes which offer osmo-protection. It has been demonstrated that glycine betaine uptake is accompanied by symport with sodium ions. The locus has been named variously as proU or opuA. A gene library from L.lact
Probab=91.02 E-value=0.49 Score=48.18 Aligned_cols=54 Identities=24% Similarity=0.434 Sum_probs=46.7
Q ss_pred cccccccccCCCEEEEeCCCChhHHHHHHHHHcCCcEEEEEeCCCCcEEEEEEhhhhcc
Q psy4847 43 KIVGDVMTKLEDVYMLSYDAILDFETVSEIMKSGYSRIPVYEDRRTNIVTMFYIKDLAL 101 (396)
Q Consensus 43 ~tV~dIMtp~~dv~~l~~d~~l~~e~i~~i~~~g~sriPV~~~~~~~IVGiL~vkDLl~ 101 (396)
..+.++|.+. +.+++.++++. +++..+.++++. +||++++ ++++|+|+..+++.
T Consensus 302 ~~~~~~~~~~--~~~~~~~~~~~-~~~~~~~~~~~~-~~v~~~~-~~~~g~i~~~~~~~ 355 (363)
T TIGR01186 302 QGLQDVLIDD--IYTVDAGTLLR-ETVRKVLKAGIK-VPVVDED-QRLVGIVTRGSLVD 355 (363)
T ss_pred CchhhhhccC--CceECCCCcHH-HHHHHHHhCCCC-EEEECCC-CcEEEEEEHHHHHH
Confidence 4577888644 67899999999 999999999999 9999766 89999999998864
No 213
>KOG1113|consensus
Probab=90.41 E-value=0.44 Score=47.94 Aligned_cols=76 Identities=18% Similarity=0.252 Sum_probs=60.7
Q ss_pred cccccccCcccceEEEEEeeEEEEEEcCCcceeecCCccchhhhhcccccccCCCCCCCCCcccccCCCcccccccccCC
Q psy4847 259 FKSLKKRNKPVDYFVLILEGRAEVVVGKENLVYEAGPFSYFGCQALTQNIGIAESPTNNSSAAQAYGGSLQSVNLDSILR 338 (396)
Q Consensus 259 ~~~LY~~g~~~d~f~LIL~Grv~V~~G~e~~~~E~gpfs~~G~~aL~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~ 338 (396)
+..+-..|.+++.|.+|.+|-|.|.--.+|.+--.++..|||+.||..+ .++.+
T Consensus 271 G~~Vi~qg~~ge~f~~i~eGEvdv~~~~~~v~vkl~~~dyfge~al~~~--~pr~A------------------------ 324 (368)
T KOG1113|consen 271 GERVIVQGDQGEHFYIIEEGEVDVLKKRDGVEVKLKKGDYFGELALLKN--LPRAA------------------------ 324 (368)
T ss_pred CceEEeccCCcceEEEecccccchhhccCCeEEEechhhhcchHHHHhh--chhhc------------------------
Confidence 3457888899999999999999998866778889999999999999872 22211
Q ss_pred cccccCcEEEEcCCeEEEEEeHHHHHHHH
Q psy4847 339 YTFVPDYSVRATTEMFYVKIRRSFYLAAK 367 (396)
Q Consensus 339 ~~~~PD~sv~~~~d~~~~~Itr~~Y~~al 367 (396)
+|.|.+++..++..|..|+.-|
T Consensus 325 -------tv~a~~~~kc~~~dk~~ferll 346 (368)
T KOG1113|consen 325 -------TVVAKGRLKCAKLDKPRFERLL 346 (368)
T ss_pred -------eeeccCCceeeeeChHHHHHHh
Confidence 7888888888888888776544
No 214
>KOG2550|consensus
Probab=90.07 E-value=0.31 Score=49.97 Aligned_cols=70 Identities=24% Similarity=0.308 Sum_probs=57.3
Q ss_pred CCCCHHHHHHHHHHhcccccccccccccCCCEEEEeCCCChhHHHHHHHHHcCCcEEEEEeCCCCcEEEEEEhhhhcc
Q psy4847 24 NDLEKDEVNIISGALELRRKIVGDVMTKLEDVYMLSYDAILDFETVSEIMKSGYSRIPVYEDRRTNIVTMFYIKDLAL 101 (396)
Q Consensus 24 ~~l~~~E~~~i~~alel~~~tV~dIMtp~~dv~~l~~d~~l~~e~i~~i~~~g~sriPV~~~~~~~IVGiL~vkDLl~ 101 (396)
|.++..+.+.+ +=+.+-+.+|||++. ++.+.+.++. ++-+.+.++.-.++||++++ |++|.+|...||..
T Consensus 156 G~vtsrdi~f~----~~~~~~~~~vmt~~~--~~~~~gi~l~-~~neiL~~~kkGkl~iv~~~-gelva~~~rtDl~k 225 (503)
T KOG2550|consen 156 GIITSRDIQFL----EDNSLLVSDVMTKNP--VTGAQGITLK-EANEILKKIKKGKLPVVDDK-GELVAMLSRTDLMK 225 (503)
T ss_pred EEEehhhhhhh----hcccchhhhhccccc--ccccccccHH-HHHHHHHhhhcCCcceeccC-Cceeeeeehhhhhh
Confidence 44566666666 446788999999985 7888888898 88888888888899999876 99999999999953
No 215
>COG4109 Predicted transcriptional regulator containing CBS domains [Transcription]
Probab=88.64 E-value=0.66 Score=46.84 Aligned_cols=58 Identities=14% Similarity=0.208 Sum_probs=50.2
Q ss_pred ccccccccccccCCCEEEEeCCCChhHHHHHHHHHcCCcEEEEEeCCCCcEEEEEEhhhhcc
Q psy4847 40 LRRKIVGDVMTKLEDVYMLSYDAILDFETVSEIMKSGYSRIPVYEDRRTNIVTMFYIKDLAL 101 (396)
Q Consensus 40 l~~~tV~dIMtp~~dv~~l~~d~~l~~e~i~~i~~~g~sriPV~~~~~~~IVGiL~vkDLl~ 101 (396)
.++.++..+||+. .+++.+.+++. .....|.-.|+.-+||++++ .+++|+++..|++.
T Consensus 246 ~~~t~ieKVMtkn--p~tv~~~tsVA-svaq~MiwE~iem~PVv~~n-~~llGiitR~dvlk 303 (432)
T COG4109 246 KPSTTIEKVMTKN--PITVRAKTSVA-SVAQMMIWEGIEMLPVVDSN-NTLLGIITRQDVLK 303 (432)
T ss_pred CCCccHHHHhccC--CeeecccchHH-HHHHHHHhccceeeeEEcCC-ceEEEEEEHHHHHH
Confidence 3567889999965 68899999998 78888888899999999876 79999999999975
No 216
>KOG0614|consensus
Probab=87.64 E-value=1.1 Score=47.50 Aligned_cols=67 Identities=21% Similarity=0.213 Sum_probs=50.9
Q ss_pred cHHHHHHHHhcCCCCCCCccccccccCcccceEEEEEeeEEEEEEcCC-----cceeecCCccchhhhhccc
Q psy4847 240 VGSLLDRITQKGTSQQKPTFKSLKKRNKPVDYFVLILEGRAEVVVGKE-----NLVYEAGPFSYFGCQALTQ 306 (396)
Q Consensus 240 ~e~vL~~Ll~~~~v~~~~~~~~LY~~g~~~d~f~LIL~Grv~V~~G~e-----~~~~E~gpfs~~G~~aL~~ 306 (396)
+|.+|.++..-....-.+...-|.+.|+..|+|.+|-.|.|.|+---| -..--.+-..|||+.||..
T Consensus 284 ~Ee~L~KiaD~le~~~Yd~g~yIirqge~G~~ffii~~G~V~vtq~~e~~~q~~~lr~l~kGd~FGE~al~~ 355 (732)
T KOG0614|consen 284 PEELLLKIADVLEEEYYDAGEYIIRQGEKGDTFFIISKGTVKVTQQDEGSTQPQELRTLNKGDYFGERALLG 355 (732)
T ss_pred CHHHHHHHHHHHHHHhhcCCceEEeecCCCCeEEEEecceEEEeecCCCCCchhHHhhccccchhhHHHhhc
Confidence 667777776554444455666799999999999999999999987333 3444456778999999986
No 217
>PRK11573 hypothetical protein; Provisional
Probab=85.17 E-value=2.5 Score=43.84 Aligned_cols=62 Identities=8% Similarity=0.216 Sum_probs=47.7
Q ss_pred ccchhhhhhhhcCCceEEcCCCCHHHHHHHHHhcCCceEEEEEEeCCCCCCCCCCceeeeecHHHHHHHHH
Q psy4847 107 NTPLKTLCQFYQNSCYFVFEDTTLDVLLKQFKEGIKGHMAFVHRVNNEGEGDPFYETVGLITLEDVIEELI 177 (396)
Q Consensus 107 ~~~l~~v~~~~~~~v~~V~~dt~L~~~L~~f~~~~~~h~avV~~~~~~~~~De~g~~vGIVTleDIiEeli 177 (396)
+.+++++|.+ ...+..++.++++.++++.+.+.+.+.+++.. +.-..++|+|...|++..+.
T Consensus 186 ~~~v~eiMtP-r~~i~~l~~~~~~~e~~~~~~~~~~SR~PVy~--------~~~D~IiGiv~~kDll~~~~ 247 (413)
T PRK11573 186 KVTVDDIMVP-RNEIVGIDINDDWKSILRQLTHSPHGRIVLYR--------DSLDDAISMLRVREAYRLMT 247 (413)
T ss_pred CCChhhcCCc-cceEEEEECCCCHHHHHHHHHhCCCceEEEEc--------CCCCceEEEEEHHHHHHHhh
Confidence 3467888865 35689999999999999999986455555443 44568999999999997653
No 218
>PRK10070 glycine betaine transporter ATP-binding subunit; Provisional
Probab=85.15 E-value=1.9 Score=44.54 Aligned_cols=56 Identities=13% Similarity=0.163 Sum_probs=46.2
Q ss_pred ccccccccccCCCEEEEeCCCChhHHHHHHHHHcCCcEEEEEeCCCCcEEEEEEhhhhccc
Q psy4847 42 RKIVGDVMTKLEDVYMLSYDAILDFETVSEIMKSGYSRIPVYEDRRTNIVTMFYIKDLALV 102 (396)
Q Consensus 42 ~~tV~dIMtp~~dv~~l~~d~~l~~e~i~~i~~~g~sriPV~~~~~~~IVGiL~vkDLl~~ 102 (396)
..++.++|.+. +.+++.++++. +++..+.++.+. +||++++ ++++|+|+..+++..
T Consensus 336 ~~~~~~~~~~~--~~~~~~~~~~~-~~~~~~~~~~~~-~~v~~~~-~~~~g~~~~~~~~~~ 391 (400)
T PRK10070 336 QQGLDAALIDA--PLAVDAQTPLS-ELLSHVGQAPCA-VPVVDED-QQYVGIISKGMLLRA 391 (400)
T ss_pred CCchhhhhccC--CceeCCCCCHH-HHHHHHHhCCCc-EEEECCC-CcEEEEEEHHHHHHH
Confidence 34677777643 67899999999 999999988776 9999765 899999999998753
No 219
>PF04831 Popeye: Popeye protein conserved region; InterPro: IPR006916 The Popeye (POP) family of proteins, is restricted to vertebrates and is preferentially expressed in developing and adult striated muscle. It is represented by a conserved region which includes three potential transmembrane domains []. The strong conservation of POP genes during evolution and their preferential expression in heart and skeletal muscle suggest that these novel proteins may have an important function in these tissues in vertebrates.; GO: 0016020 membrane
Probab=84.93 E-value=4.1 Score=36.50 Aligned_cols=100 Identities=14% Similarity=0.138 Sum_probs=57.0
Q ss_pred cHHHHHHHHhcCCCCCC-Ccccc-ccccCcccceEEEEEeeEEEEEEcCCcceeecCCccchhhhhcccccccCCCCCCC
Q psy4847 240 VGSLLDRITQKGTSQQK-PTFKS-LKKRNKPVDYFVLILEGRAEVVVGKENLVYEAGPFSYFGCQALTQNIGIAESPTNN 317 (396)
Q Consensus 240 ~e~vL~~Ll~~~~v~~~-~~~~~-LY~~g~~~d~f~LIL~Grv~V~~G~e~~~~E~gpfs~~G~~aL~~~~~~~~~~~~~ 317 (396)
+...+++|...+..... .+... --..-.|.|..-|+|+||+.|.....-+ -=.+|+.++ ++++.....
T Consensus 16 s~~~Fk~iv~~~~~i~~L~~~~~YAvE~~T~~drLSlLLsGr~~Vs~~g~fL-H~I~p~qFl------DSPEW~s~~--- 85 (153)
T PF04831_consen 16 SRQQFKKIVGCCCEIRTLKKGETYAVEGKTPIDRLSLLLSGRMRVSCDGRFL-HYIYPYQFL------DSPEWESLR--- 85 (153)
T ss_pred CHHHHHHHHhhhceEEEecCCceeeecCCcccceEeEEEcCcEEEEECCEee-Eeecccccc------cChhhhccc---
Confidence 45667777766433222 22211 2345568899999999999999854332 222444443 322221111
Q ss_pred CCcccccCCCcccccccccCCcccccCcEEEEcCCeEEEEEeHHHHHHHHH
Q psy4847 318 SSAAQAYGGSLQSVNLDSILRYTFVPDYSVRATTEMFYVKIRRSFYLAAKR 368 (396)
Q Consensus 318 ~~~~~~~~~s~~~~~~~~~~~~~~~PD~sv~~~~d~~~~~Itr~~Y~~al~ 368 (396)
| +.+..-++ |..|.++|+|+.=+|......+.
T Consensus 86 --~---s~~~~FQV--------------TitA~~~Cryl~W~R~kL~~~l~ 117 (153)
T PF04831_consen 86 --P---SEDDKFQV--------------TITAEEDCRYLCWPREKLYLLLA 117 (153)
T ss_pred --c---CCCCeEEE--------------EEEEcCCcEEEEEEHHHHHHHHh
Confidence 0 11111111 88899999999999986555443
No 220
>COG1253 TlyC Hemolysins and related proteins containing CBS domains [General function prediction only]
Probab=80.91 E-value=3.9 Score=42.50 Aligned_cols=65 Identities=9% Similarity=0.246 Sum_probs=49.8
Q ss_pred ccchhhhhhhhcCCceEEcCCCCHHHHHHHHHhcCCceEEEEEEeCCCCCCCCCCceeeeecHHHHHHHHHhcc
Q psy4847 107 NTPLKTLCQFYQNSCYFVFEDTTLDVLLKQFKEGIKGHMAFVHRVNNEGEGDPFYETVGLITLEDVIEELIQAE 180 (396)
Q Consensus 107 ~~~l~~v~~~~~~~v~~V~~dt~L~~~L~~f~~~~~~h~avV~~~~~~~~~De~g~~vGIVTleDIiEeli~~e 180 (396)
..+++++|.+ ...+.+++.+.++.++.+.+++..++.+++.- +.-..++|+|...|++..+..++
T Consensus 205 ~~~v~eiMtP-R~~i~~l~~~~~~~~~~~~~~~~~~SR~PV~~--------~~~D~iiGiv~~Kdll~~~~~~~ 269 (429)
T COG1253 205 DRTVREIMTP-RTDIVALDLTDTVEELIELILESGHSRIPVYD--------GDLDNIIGIVHVKDLLRALLDGQ 269 (429)
T ss_pred CcEeeeEeee-cccEEEEcCCCCHHHHHHHHHhCCCCeeeEEc--------CCCCcEEEEEEHHHHHHHHhcCc
Confidence 4577888865 35688999999999999999775445555442 34568999999999999988543
No 221
>COG1125 OpuBA ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism]
Probab=77.84 E-value=22 Score=34.96 Aligned_cols=130 Identities=18% Similarity=0.203 Sum_probs=71.7
Q ss_pred ccccCCCCHHHHHHHHHHhc-ccccccccccccCCCEEEEeCCCChhHHHHHHHHHcCCcEEEEEeCCCCcEEEEEEhhh
Q psy4847 20 TTEFNDLEKDEVNIISGALE-LRRKIVGDVMTKLEDVYMLSYDAILDFETVSEIMKSGYSRIPVYEDRRTNIVTMFYIKD 98 (396)
Q Consensus 20 ~~e~~~l~~~E~~~i~~ale-l~~~tV~dIMtp~~dv~~l~~d~~l~~e~i~~i~~~g~sriPV~~~~~~~IVGiL~vkD 98 (396)
.++.|.|++--+.-++.-|. +.. ..+ +| ++.+..| ++ |+++.. +|+.|.++ |+++-+=+..+
T Consensus 160 DEPFgALDpI~R~~lQ~e~~~lq~-~l~--kT----ivfVTHD--id-EA~kLa-----dri~vm~~--G~i~Q~~~P~~ 222 (309)
T COG1125 160 DEPFGALDPITRKQLQEEIKELQK-ELG--KT----IVFVTHD--ID-EALKLA-----DRIAVMDA--GEIVQYDTPDE 222 (309)
T ss_pred cCCccccChhhHHHHHHHHHHHHH-HhC--CE----EEEEecC--HH-HHHhhh-----ceEEEecC--CeEEEeCCHHH
Confidence 46667777666665555432 221 111 22 4444443 33 555432 48888864 78888887777
Q ss_pred hcccCCc--------------cccchhhhhhhhcCCc----eEEcCCCCHHHHHHHHHhcCCceEEEEEEeCCCCCCCCC
Q psy4847 99 LALVDPD--------------DNTPLKTLCQFYQNSC----YFVFEDTTLDVLLKQFKEGIKGHMAFVHRVNNEGEGDPF 160 (396)
Q Consensus 99 Ll~~~~~--------------~~~~l~~v~~~~~~~v----~~V~~dt~L~~~L~~f~~~~~~h~avV~~~~~~~~~De~ 160 (396)
++.-..+ ...++..+.+.+.... --+.......+++..|... ....+.|+ |+.
T Consensus 223 il~~Pan~FV~~f~g~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~~~~~-~~~~~~Vv--------d~~ 293 (309)
T COG1125 223 ILANPANDFVEDFFGESERGLRLLSLVSVADAVRRGEPADGEPLLEGFVDRDALSDFLAR-GRSVLPVV--------DED 293 (309)
T ss_pred HHhCccHHHHHHHhccccccccccchhhHHHhhcccccccCCccccchhhHHHHHHHHhc-CCceeEEE--------CCC
Confidence 6532111 0112222322221111 1233344445577777664 55666677 999
Q ss_pred CceeeeecHHHHHHH
Q psy4847 161 YETVGLITLEDVIEE 175 (396)
Q Consensus 161 g~~vGIVTleDIiEe 175 (396)
|+++|+||.+|++..
T Consensus 294 g~~~G~vt~~~l~~~ 308 (309)
T COG1125 294 GRPLGTVTRADLLDE 308 (309)
T ss_pred CcEeeEEEHHHHhhh
Confidence 999999999998754
No 222
>KOG0501|consensus
Probab=74.17 E-value=2.9 Score=44.88 Aligned_cols=76 Identities=25% Similarity=0.299 Sum_probs=58.4
Q ss_pred ccccccCcccceEEEEEeeEEEEEEcCCcceeecCCccchhhhhcccccccCCCCCCCCCcccccCCCcccccccccCCc
Q psy4847 260 KSLKKRNKPVDYFVLILEGRAEVVVGKENLVYEAGPFSYFGCQALTQNIGIAESPTNNSSAAQAYGGSLQSVNLDSILRY 339 (396)
Q Consensus 260 ~~LY~~g~~~d~f~LIL~Grv~V~~G~e~~~~E~gpfs~~G~~aL~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~ 339 (396)
+.||+.|+-.|-.+.|.+|..||.- .+....-.|-..+||-.--..+ .++.+..
T Consensus 580 DLlYHtGESvDaLcFvVsGSLEVIQ-DDEVVAILGKGDVFGD~FWK~~-t~~qs~A------------------------ 633 (971)
T KOG0501|consen 580 DLLYHTGESVDALCFVVSGSLEVIQ-DDEVVAILGKGDVFGDEFWKEN-TLGQSAA------------------------ 633 (971)
T ss_pred ceeeecCCccceEEEEEecceEEee-cCcEEEEeecCccchhHHhhhh-hhhhhhh------------------------
Confidence 4599999999999999999999854 5667888999999998887763 1111110
Q ss_pred ccccCcEEEEcCCeEEEEEeHHHHHHHH
Q psy4847 340 TFVPDYSVRATTEMFYVKIRRSFYLAAK 367 (396)
Q Consensus 340 ~~~PD~sv~~~~d~~~~~Itr~~Y~~al 367 (396)
.|||+|-|-+--|.|...+..|
T Consensus 634 ------NVRALTYcDLH~IKrd~Ll~VL 655 (971)
T KOG0501|consen 634 ------NVRALTYCDLHMIKRDKLLKVL 655 (971)
T ss_pred ------hhhhhhhhhhhHHhHHHHHHHH
Confidence 5888888877778887766544
No 223
>COG4536 CorB Putative Mg2+ and Co2+ transporter CorB [Inorganic ion transport and metabolism]
Probab=68.44 E-value=5.8 Score=40.59 Aligned_cols=94 Identities=12% Similarity=0.188 Sum_probs=69.5
Q ss_pred HHHHHHHHcCCcEEEEEeCCCCcEEEEEEhhhhcccCCccccchhhhhhhhcCCceEEcCCCCHHHHHHHHHhcCCceEE
Q psy4847 67 ETVSEIMKSGYSRIPVYEDRRTNIVTMFYIKDLALVDPDDNTPLKTLCQFYQNSCYFVFEDTTLDVLLKQFKEGIKGHMA 146 (396)
Q Consensus 67 e~i~~i~~~g~sriPV~~~~~~~IVGiL~vkDLl~~~~~~~~~l~~v~~~~~~~v~~V~~dt~L~~~L~~f~~~~~~h~a 146 (396)
|-++-+...-++..|++..+++.+.|++..+. .++.++|-. ...+..+.-|.+..++.+++.++.+.+++
T Consensus 168 EElR~~v~~~~~e~~~~~~~rdmL~gvLDLe~---------~tV~DIMvp-R~~i~~id~d~~~e~iv~ql~~s~HtRip 237 (423)
T COG4536 168 EELRTAVNESGSEGSVNKIDRDMLLGVLDLEN---------LTVSDIMVP-RNEIIGIDIDDPWEEIVRQLLHSPHTRIP 237 (423)
T ss_pred HHHHHHHHHhhcccccccccHHHHhccccccc---------ceeeeeecc-ccceeeecCCCCHHHHHHHHhhCCCCcee
Confidence 44556666777789998766677778775433 356777642 34678899999999999999986555555
Q ss_pred EEEEeCCCCCCCCCCceeeeecHHHHHHHHHh
Q psy4847 147 FVHRVNNEGEGDPFYETVGLITLEDVIEELIQ 178 (396)
Q Consensus 147 vV~~~~~~~~~De~g~~vGIVTleDIiEeli~ 178 (396)
+-. |.-..++||+-..|++..+..
T Consensus 238 lyr--------~~~DnIiGvlh~r~llr~l~e 261 (423)
T COG4536 238 LYR--------DDLDNIIGVLHVRDLLRLLNE 261 (423)
T ss_pred eec--------CChhHhhhhhhHHHHHHHhhc
Confidence 443 555679999999999999974
No 224
>KOG2968|consensus
Probab=59.54 E-value=7.4 Score=43.86 Aligned_cols=70 Identities=24% Similarity=0.378 Sum_probs=54.8
Q ss_pred ccccccCcccceEEEEEeeEEEEEE----cCCcceeecCCccchhhhh-cccccccCCCCCCCCCcccccCCCccccccc
Q psy4847 260 KSLKKRNKPVDYFVLILEGRAEVVV----GKENLVYEAGPFSYFGCQA-LTQNIGIAESPTNNSSAAQAYGGSLQSVNLD 334 (396)
Q Consensus 260 ~~LY~~g~~~d~f~LIL~Grv~V~~----G~e~~~~E~gpfs~~G~~a-L~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~ 334 (396)
..||++|.+||--+.||.||++-.. |+-.+.-|-|-...+|+.- |+.. ++..
T Consensus 517 ~alyrqgD~Sd~iyvVl~GRlRsv~~~~~~k~~i~~EygrGd~iG~~E~lt~~---~R~t-------------------- 573 (1158)
T KOG2968|consen 517 QALYRQGDSSDSIYVVLNGRLRSVIRQSGGKKEIVGEYGRGDLIGEVEMLTKQ---PRAT-------------------- 573 (1158)
T ss_pred cHHHhcCCccCcEEEEecCeehhhhhccCccchhhhhccCcceeehhHHhhcC---Cccc--------------------
Confidence 3499999999999999999998766 4566888899999999754 4431 0111
Q ss_pred ccCCcccccCcEEEEcCCeEEEEEeHHHH
Q psy4847 335 SILRYTFVPDYSVRATTEMFYVKIRRSFY 363 (396)
Q Consensus 335 ~~~~~~~~PD~sv~~~~d~~~~~Itr~~Y 363 (396)
||.|.-|...++|++..+
T Consensus 574 -----------Tv~AvRdSelariPe~l~ 591 (1158)
T KOG2968|consen 574 -----------TVMAVRDSELARIPEGLL 591 (1158)
T ss_pred -----------eEEEEeehhhhhccHHHH
Confidence 888999999999998764
No 225
>PF07883 Cupin_2: Cupin domain; InterPro: IPR013096 This family represents the conserved barrel domain of the cupin superfamily [] (cupa is the Latin term for a small barrel). ; PDB: 2OPK_C 3BU7_B 2PHD_D 3NVC_A 3NKT_A 3NJZ_A 3NW4_A 3NST_A 3NL1_A 2H0V_A ....
Probab=56.97 E-value=14 Score=27.25 Aligned_cols=33 Identities=24% Similarity=0.452 Sum_probs=25.8
Q ss_pred ccc-eEEEEEeeEEEEEEcCCcceeecCCccchh
Q psy4847 268 PVD-YFVLILEGRAEVVVGKENLVYEAGPFSYFG 300 (396)
Q Consensus 268 ~~d-~f~LIL~Grv~V~~G~e~~~~E~gpfs~~G 300 (396)
+.. -++.||+|++++.++.+...++.|-+-++.
T Consensus 17 ~~~~e~~~vl~G~~~~~~~~~~~~l~~Gd~~~i~ 50 (71)
T PF07883_consen 17 PGEDEFFYVLSGEGTLTVDGERVELKPGDAIYIP 50 (71)
T ss_dssp SSEEEEEEEEESEEEEEETTEEEEEETTEEEEEE
T ss_pred CCCCEEEEEEECCEEEEEccEEeEccCCEEEEEC
Confidence 444 899999999999999887777777554443
No 226
>PF05899 Cupin_3: Protein of unknown function (DUF861); InterPro: IPR008579 The function of the proteins in this entry are unknown. They contain the conserved barrel domain of the 'cupin' superfamily and members are specific to plants and bacteria.; PDB: 1RC6_A 3MYX_A 1O5U_A 2K9Z_A 1LKN_A 3ES4_A 1SFN_B 3BCW_A.
Probab=56.69 E-value=16 Score=28.34 Aligned_cols=26 Identities=31% Similarity=0.581 Sum_probs=19.5
Q ss_pred cceEEEEEeeEEEEEE-cCCcceeecC
Q psy4847 269 VDYFVLILEGRAEVVV-GKENLVYEAG 294 (396)
Q Consensus 269 ~d~f~LIL~Grv~V~~-G~e~~~~E~g 294 (396)
.|-|++||+|+|+++. +.+...+.+|
T Consensus 25 ~~E~~~vleG~v~it~~~G~~~~~~aG 51 (74)
T PF05899_consen 25 EDEFFYVLEGEVTITDEDGETVTFKAG 51 (74)
T ss_dssp SEEEEEEEEEEEEEEETTTEEEEEETT
T ss_pred CCEEEEEEEeEEEEEECCCCEEEEcCC
Confidence 3889999999999998 4444554444
No 227
>PRK09943 DNA-binding transcriptional repressor PuuR; Provisional
Probab=53.51 E-value=15 Score=33.38 Aligned_cols=38 Identities=13% Similarity=0.102 Sum_probs=31.7
Q ss_pred cccceEEEEEeeEEEEEEcCCcceeecCCccchhhhhc
Q psy4847 267 KPVDYFVLILEGRAEVVVGKENLVYEAGPFSYFGCQAL 304 (396)
Q Consensus 267 ~~~d~f~LIL~Grv~V~~G~e~~~~E~gpfs~~G~~aL 304 (396)
++..-|+.||+|++++.+|.+.+..++|=+-+|.....
T Consensus 126 h~~~E~~~Vl~G~~~~~~~~~~~~l~~Gd~~~~~~~~~ 163 (185)
T PRK09943 126 HQGEEIGTVLEGEIVLTINGQDYHLVAGQSYAINTGIP 163 (185)
T ss_pred cCCcEEEEEEEeEEEEEECCEEEEecCCCEEEEcCCCC
Confidence 35589999999999999999999888888777766544
No 228
>TIGR03415 ABC_choXWV_ATP choline ABC transporter, ATP-binding protein. Members of this protein family are the ATP-binding subunit of a three-protein transporter. This family belongs, more broadly, to the family of proline and glycine-betaine transporters, but members have been identified by direct characterization and by bioinformatic means as choline transporters. Many species have several closely-related members of this family, probably with variable abilities to act additionally on related quaternary amines.
Probab=50.28 E-value=21 Score=36.69 Aligned_cols=44 Identities=14% Similarity=0.218 Sum_probs=37.5
Q ss_pred CEEEEeCCCChhHHHHHHHHHcCCcEEEEEeCCCCcEEEEEEhhhhcc
Q psy4847 54 DVYMLSYDAILDFETVSEIMKSGYSRIPVYEDRRTNIVTMFYIKDLAL 101 (396)
Q Consensus 54 dv~~l~~d~~l~~e~i~~i~~~g~sriPV~~~~~~~IVGiL~vkDLl~ 101 (396)
++.++++++++. +++..+.++++. +||+++ |+++|+|...+++.
T Consensus 334 ~~~~~~~~~~~~-~~~~~~~~~~~~-~~v~~~--~~~~g~~~~~~~~~ 377 (382)
T TIGR03415 334 APTVINPDTLMR-DVLAARHRTGGA-ILLVEN--GRIVGVIGDDNIYH 377 (382)
T ss_pred cCcccCCCCcHH-HHHHHHhcCCCC-eEEeeC--CeEEEEEeHHHHHH
Confidence 467899999999 999998888874 888864 89999999988864
No 229
>COG1125 OpuBA ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism]
Probab=48.79 E-value=23 Score=34.85 Aligned_cols=60 Identities=20% Similarity=0.179 Sum_probs=41.9
Q ss_pred ccccccccccccCCCE--EEEeCCCChhHHHHHHHHHcCCcEEEEEeCCCCcEEEEEEhhhhcc
Q psy4847 40 LRRKIVGDVMTKLEDV--YMLSYDAILDFETVSEIMKSGYSRIPVYEDRRTNIVTMFYIKDLAL 101 (396)
Q Consensus 40 l~~~tV~dIMtp~~dv--~~l~~d~~l~~e~i~~i~~~g~sriPV~~~~~~~IVGiL~vkDLl~ 101 (396)
+...+|.+.|.+.... -.+....... +++..++..+.+.+||++++ ++++|.|+..+|+.
T Consensus 246 l~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~ls~~~~~~~~~~~Vvd~~-g~~~G~vt~~~l~~ 307 (309)
T COG1125 246 LSLVSVADAVRRGEPADGEPLLEGFVDR-DALSDFLARGRSVLPVVDED-GRPLGTVTRADLLD 307 (309)
T ss_pred cchhhHHHhhcccccccCCccccchhhH-HHHHHHHhcCCceeEEECCC-CcEeeEEEHHHHhh
Confidence 3556778888664311 1122222333 68888899999999999876 89999999998863
No 230
>COG4535 CorC Putative Mg2+ and Co2+ transporter CorC [Inorganic ion transport and metabolism]
Probab=48.74 E-value=59 Score=31.56 Aligned_cols=91 Identities=12% Similarity=0.119 Sum_probs=58.3
Q ss_pred cccccccccCCCEEEEeCCCChhHHHHHHHHHcCCcEEEEEeCCCCcEEEEEEhhhhccc---CCcc---ccchhhhhhh
Q psy4847 43 KIVGDVMTKLEDVYMLSYDAILDFETVSEIMKSGYSRIPVYEDRRTNIVTMFYIKDLALV---DPDD---NTPLKTLCQF 116 (396)
Q Consensus 43 ~tV~dIMtp~~dv~~l~~d~~l~~e~i~~i~~~g~sriPV~~~~~~~IVGiL~vkDLl~~---~~~~---~~~l~~v~~~ 116 (396)
-.++++..| ++++|++..++ ..++++...++.-..|+++- |.+-|+|+..|++.. +-++ .....++..
T Consensus 133 F~i~~lLRP---av~VPESKrvd-~lLkeFR~~RnHMAIViDEf-GgVsGLVTIEDiLEqIVGdIEDE~Deee~~dI~~- 206 (293)
T COG4535 133 FDIKELLRP---AVVVPESKRVD-RLLKEFRSQRNHMAIVIDEF-GGVSGLVTIEDILEQIVGDIEDEYDEEEDADIRQ- 206 (293)
T ss_pred ccHHHhccc---ceecccchhHH-HHHHHHHhhcCceEEEEecc-CCeeeeEEHHHHHHHHhcccccccchhhhhhhHh-
Confidence 345566655 57899999999 89999988877777777654 889999999999742 1111 111122211
Q ss_pred hcCCceEEcCCCCHHHHHHHHHh
Q psy4847 117 YQNSCYFVFEDTTLDVLLKQFKE 139 (396)
Q Consensus 117 ~~~~v~~V~~dt~L~~~L~~f~~ 139 (396)
..+....|..=|++.+-=+.|..
T Consensus 207 ls~~~~~VrALT~IedFNe~F~t 229 (293)
T COG4535 207 LSRHTWRVRALTEIEDFNEAFGT 229 (293)
T ss_pred hcCCceEEEecccHHHHHHHhcC
Confidence 12344566666666665555543
No 231
>COG2216 KdpB High-affinity K+ transport system, ATPase chain B [Inorganic ion transport and metabolism]
Probab=41.88 E-value=35 Score=36.65 Aligned_cols=35 Identities=31% Similarity=0.545 Sum_probs=29.8
Q ss_pred hhHHHHHHHHHcCCcEEEEEeCCCCcEEEEEEhhhhcc
Q psy4847 64 LDFETVSEIMKSGYSRIPVYEDRRTNIVTMFYIKDLAL 101 (396)
Q Consensus 64 l~~e~i~~i~~~g~sriPV~~~~~~~IVGiL~vkDLl~ 101 (396)
++ .+.+.+.+.|-+-++|+++ +++.|+|++||+..
T Consensus 415 l~-~~~~~vs~~GGTPL~V~~~--~~~~GVI~LkDivK 449 (681)
T COG2216 415 LD-AAVDEVSRLGGTPLVVVEN--GRILGVIYLKDIVK 449 (681)
T ss_pred HH-HHHHHHHhcCCCceEEEEC--CEEEEEEEehhhcc
Confidence 44 6677788999999999986 68999999999974
No 232
>TIGR03214 ura-cupin putative allantoin catabolism protein. This model represents a protein containing a tandem arrangement of cupin domains (N-terminal part of pfam07883 and C-terminal more distantly related to pfam00190). This protein is found in the vicinity of genes involved in the catabolism of allantoin, a breakdown product of urate and sometimes of urate iteslf. The distribution of pathway components in the genomes in which this family is observed suggests that the function is linked to the allantoate catabolism to glyoxylate pathway (GenProp0686) since it is sometimes found in genomes lacking any elements of the xanthine-to-allantoin pathways (e.g. in Enterococcus faecalis).
Probab=40.77 E-value=25 Score=34.05 Aligned_cols=33 Identities=18% Similarity=0.438 Sum_probs=28.4
Q ss_pred ceEEEEEeeEEEEEEcCCcceeecCCccchhhh
Q psy4847 270 DYFVLILEGRAEVVVGKENLVYEAGPFSYFGCQ 302 (396)
Q Consensus 270 d~f~LIL~Grv~V~~G~e~~~~E~gpfs~~G~~ 302 (396)
.-|+.||+|+++|.+|.+....+.|-+-||-..
T Consensus 81 ee~iyVl~G~l~v~~~g~~~~L~~Gd~~y~pa~ 113 (260)
T TIGR03214 81 ETFLFVISGEVNVTAEGETHELREGGYAYLPPG 113 (260)
T ss_pred EEEEEEEeCEEEEEECCEEEEECCCCEEEECCC
Confidence 689999999999999999888888887777443
No 233
>PF06719 AraC_N: AraC-type transcriptional regulator N-terminus; InterPro: IPR009594 This entry represents the N terminus of bacterial ARAC-type transcriptional regulators. In Escherichia coli these regulate the L-arabinose operon through sensing the presence of arabinose, and when the sugar is present, transmitting this information from the arabinose-binding domains to the protein s DNA-binding domains []. This family might represent the N-terminal arm of the protein, which binds to the C-terminal DNA binding domains to hold them in a state where the protein prefers to loop and remain non-activating []. This domain is associated with the IPR000005 from INTERPRO domain.
Probab=38.77 E-value=32 Score=30.41 Aligned_cols=29 Identities=24% Similarity=0.523 Sum_probs=22.7
Q ss_pred eEEEEEeeEEEEEEcCCcceeecCCccch
Q psy4847 271 YFVLILEGRAEVVVGKENLVYEAGPFSYF 299 (396)
Q Consensus 271 ~f~LIL~Grv~V~~G~e~~~~E~gpfs~~ 299 (396)
.+++||||+=+|.+|.+.+.+-+|-|=..
T Consensus 25 ~i~~vlQG~K~~~~g~~~~~Y~~g~~lv~ 53 (155)
T PF06719_consen 25 SICIVLQGSKRVHLGDQVFEYDAGQYLVS 53 (155)
T ss_pred eEEEEEeeeEEEEECCceEEecCCcEEEe
Confidence 48999999999999988876666654433
No 234
>KOG0500|consensus
Probab=37.00 E-value=1.4e+02 Score=31.80 Aligned_cols=85 Identities=14% Similarity=0.108 Sum_probs=60.1
Q ss_pred CccccccccCcccceEEEEEeeEEEEEEcCC-cceeecCCccchhhhhcccccccCCCCCCCCCcccccCCCcccccccc
Q psy4847 257 PTFKSLKKRNKPVDYFVLILEGRAEVVVGKE-NLVYEAGPFSYFGCQALTQNIGIAESPTNNSSAAQAYGGSLQSVNLDS 335 (396)
Q Consensus 257 ~~~~~LY~~g~~~d~f~LIL~Grv~V~~G~e-~~~~E~gpfs~~G~~aL~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~ 335 (396)
..++.|-++|+-+.-..+|-.|+++|..-.. .........++||+-.+....| +-..|+-.
T Consensus 336 SPgDyICrKGdvgkEMyIVk~G~L~Vv~dDg~t~~~~L~~G~~FGEisIlni~g---~~~gNRRt--------------- 397 (536)
T KOG0500|consen 336 SPGDYICRKGDVGKEMYIVKEGKLAVVADDGVTVFVTLKAGSVFGEISILNIKG---NKNGNRRT--------------- 397 (536)
T ss_pred CCCCeEEecCcccceEEEEEccEEEEEecCCcEEEEEecCCceeeeeEEEEEcC---cccCCcce---------------
Confidence 3456799999999999999999999988333 2355788999999999886432 11111100
Q ss_pred cCCcccccCcEEEEcCCeEEEEEeHHHHHHHHH
Q psy4847 336 ILRYTFVPDYSVRATTEMFYVKIRRSFYLAAKR 368 (396)
Q Consensus 336 ~~~~~~~PD~sv~~~~d~~~~~Itr~~Y~~al~ 368 (396)
-+||-..-......+|....+||.
T Consensus 398 ---------anvrSvGYSDlfvLskdDl~~aL~ 421 (536)
T KOG0500|consen 398 ---------ANVRSVGYSDLFVLSKDDLWEALS 421 (536)
T ss_pred ---------eeeeeeccceeeEeeHHHHHHHHH
Confidence 056666666677788998888874
No 235
>KOG0499|consensus
Probab=32.63 E-value=1.5e+02 Score=32.51 Aligned_cols=53 Identities=17% Similarity=0.093 Sum_probs=44.5
Q ss_pred CCccccccccCcccceEEEEEeeEEEEEEcCCc--ceeecCCccchhhhhccccc
Q psy4847 256 KPTFKSLKKRNKPVDYFVLILEGRAEVVVGKEN--LVYEAGPFSYFGCQALTQNI 308 (396)
Q Consensus 256 ~~~~~~LY~~g~~~d~f~LIL~Grv~V~~G~e~--~~~E~gpfs~~G~~aL~~~~ 308 (396)
...++.+-.+|+-.--.++|=+|.|.|.=|..| ...+.-..++||+-+|...-
T Consensus 555 yLPgDfVCkKGeiGkEMYIIk~GqvQVlGGp~~~~Vl~tL~~GsVFGEISLLaig 609 (815)
T KOG0499|consen 555 YLPGDFVCKKGEIGKEMYIIKHGQVQVLGGPDGTKVLVTLKAGSVFGEISLLAIG 609 (815)
T ss_pred ecCCceeeecccccceeEEeecceEEEecCCCCCEEEEEecccceeeeeeeeeec
Confidence 344556788999999999999999999998765 66789999999999999743
No 236
>COG4175 ProV ABC-type proline/glycine betaine transport system, ATPase component [Amino acid transport and metabolism]
Probab=31.69 E-value=55 Score=33.26 Aligned_cols=44 Identities=18% Similarity=0.234 Sum_probs=36.0
Q ss_pred EEEEeCCCChhHHHHHHHHHcCCcEEEEEeCCCCcEEEEEEhhhhcc
Q psy4847 55 VYMLSYDAILDFETVSEIMKSGYSRIPVYEDRRTNIVTMFYIKDLAL 101 (396)
Q Consensus 55 v~~l~~d~~l~~e~i~~i~~~g~sriPV~~~~~~~IVGiL~vkDLl~ 101 (396)
+..++.++++. +.+..+.+.+. -+||++++ ++++|++....++.
T Consensus 337 ~~~v~~d~~~~-~~~~~~~~~~~-p~aVvde~-~r~vG~i~~~~vl~ 380 (386)
T COG4175 337 VLTVDADTPLS-EILARIRQAPC-PVAVVDED-GRYVGIISRGELLE 380 (386)
T ss_pred ccccCccchHH-HHHHHHhcCCC-ceeEEcCC-CcEEEEecHHHHHH
Confidence 67888998888 77777777665 68899876 89999999888864
No 237
>KOG0474|consensus
Probab=30.27 E-value=65 Score=35.38 Aligned_cols=53 Identities=19% Similarity=0.204 Sum_probs=44.6
Q ss_pred cccccccCCCEEEEeCCCChhHHHHHHHHHcCCcEEEEEeCCCCcEEEEEEhhhhcc
Q psy4847 45 VGDVMTKLEDVYMLSYDAILDFETVSEIMKSGYSRIPVYEDRRTNIVTMFYIKDLAL 101 (396)
Q Consensus 45 V~dIMtp~~dv~~l~~d~~l~~e~i~~i~~~g~sriPV~~~~~~~IVGiL~vkDLl~ 101 (396)
....|-|. .++++.++++. .+...+..-|....-|+... ++++|+++.||++.
T Consensus 692 l~p~~n~s--PytV~~~mSl~-k~~~lFR~lGLRhLlVv~~~-~~~~gilTR~D~~~ 744 (762)
T KOG0474|consen 692 LHPFMNPS--PYTVPETMSLA-KAFILFRQLGLRHLLVVPKT-NRVVGILTRKDLAR 744 (762)
T ss_pred cccccCCC--CcccCcccchH-HHHHHHHHhcceeEEEecCC-CceeEEEehhhhhh
Confidence 44567654 67899999999 89999999999999999765 67899999999984
No 238
>PRK11171 hypothetical protein; Provisional
Probab=30.00 E-value=56 Score=31.75 Aligned_cols=42 Identities=17% Similarity=0.229 Sum_probs=34.9
Q ss_pred cccCcccceEEEEEeeEEEEEEcCCcceeecCCccchhhhhc
Q psy4847 263 KKRNKPVDYFVLILEGRAEVVVGKENLVYEAGPFSYFGCQAL 304 (396)
Q Consensus 263 Y~~g~~~d~f~LIL~Grv~V~~G~e~~~~E~gpfs~~G~~aL 304 (396)
|...+..--+++||+|+.++.+|.+....++|-.-+|+..+-
T Consensus 199 ~~~~~~~ee~i~Vl~G~~~~~~~~~~~~l~~GD~i~~~~~~~ 240 (266)
T PRK11171 199 FVETHVMEHGLYVLEGKGVYRLNNDWVEVEAGDFIWMRAYCP 240 (266)
T ss_pred cCcCCCceEEEEEEeCEEEEEECCEEEEeCCCCEEEECCCCC
Confidence 333466668999999999999999999999999888876554
No 239
>COG0662 {ManC} Mannose-6-phosphate isomerase [Carbohydrate transport and metabolism]
Probab=29.28 E-value=60 Score=27.67 Aligned_cols=30 Identities=33% Similarity=0.500 Sum_probs=23.4
Q ss_pred cceEEEEEeeEEEEEEcCCcceeecCCccc
Q psy4847 269 VDYFVLILEGRAEVVVGKENLVYEAGPFSY 298 (396)
Q Consensus 269 ~d~f~LIL~Grv~V~~G~e~~~~E~gpfs~ 298 (396)
+|-+..||+|+..|.+|.+.+....|=..+
T Consensus 57 ~dE~~~Vl~G~g~v~~~~~~~~v~~gd~~~ 86 (127)
T COG0662 57 RDEHWYVLEGTGKVTIGGEEVEVKAGDSVY 86 (127)
T ss_pred cceEEEEEeeEEEEEECCEEEEecCCCEEE
Confidence 899999999999999996666555554333
No 240
>PF07981 Plasmod_MYXSPDY: Plasmodium repeat_MYXSPDY; InterPro: IPR012598 This repeat is found in two hypothetical Plasmodium proteins.
Probab=27.67 E-value=35 Score=19.11 Aligned_cols=9 Identities=56% Similarity=1.217 Sum_probs=7.2
Q ss_pred cccCcEEEE
Q psy4847 341 FVPDYSVRA 349 (396)
Q Consensus 341 ~~PD~sv~~ 349 (396)
|-||||+|-
T Consensus 3 ~SPdytL~~ 11 (17)
T PF07981_consen 3 FSPDYTLRL 11 (17)
T ss_pred cCCCceEEE
Confidence 569999884
No 241
>PF11699 CENP-C_C: Mif2/CENP-C like; PDB: 2VPV_B.
Probab=27.32 E-value=78 Score=25.50 Aligned_cols=25 Identities=16% Similarity=0.385 Sum_probs=18.8
Q ss_pred cceEEEEEeeEEEEEEcCCcceeec
Q psy4847 269 VDYFVLILEGRAEVVVGKENLVYEA 293 (396)
Q Consensus 269 ~d~f~LIL~Grv~V~~G~e~~~~E~ 293 (396)
.-+...|++|+|+|++....+..-.
T Consensus 33 ~~~vF~V~~G~v~Vti~~~~f~v~~ 57 (85)
T PF11699_consen 33 NTMVFYVIKGKVEVTIHETSFVVTK 57 (85)
T ss_dssp EEEEEEEEESEEEEEETTEEEEEET
T ss_pred cEEEEEEEeCEEEEEEcCcEEEEeC
Confidence 3456679999999999777666433
No 242
>PRK11171 hypothetical protein; Provisional
Probab=25.43 E-value=66 Score=31.22 Aligned_cols=34 Identities=15% Similarity=0.427 Sum_probs=28.8
Q ss_pred cceEEEEEeeEEEEEEcCCcceeecCCccchhhh
Q psy4847 269 VDYFVLILEGRAEVVVGKENLVYEAGPFSYFGCQ 302 (396)
Q Consensus 269 ~d~f~LIL~Grv~V~~G~e~~~~E~gpfs~~G~~ 302 (396)
..-|+.||+|+++|.+|.+....+.|-+-+|-..
T Consensus 83 ~eE~~~VlsG~l~v~~~g~~~~L~~GDsi~~p~~ 116 (266)
T PRK11171 83 AETFLFVVEGEITLTLEGKTHALSEGGYAYLPPG 116 (266)
T ss_pred ceEEEEEEeCEEEEEECCEEEEECCCCEEEECCC
Confidence 4689999999999999999888888877777544
No 243
>PRK13290 ectC L-ectoine synthase; Reviewed
Probab=25.00 E-value=64 Score=27.76 Aligned_cols=29 Identities=24% Similarity=0.229 Sum_probs=22.9
Q ss_pred eEEEEEeeEEEEE-E-cCCcceeecCCccch
Q psy4847 271 YFVLILEGRAEVV-V-GKENLVYEAGPFSYF 299 (396)
Q Consensus 271 ~f~LIL~Grv~V~-~-G~e~~~~E~gpfs~~ 299 (396)
.|+.||+|+.++. + |.+...+++|=+-||
T Consensus 57 E~~yVL~G~~~~~~i~~g~~~~L~aGD~i~~ 87 (125)
T PRK13290 57 EAVYCIEGEGEVEDLATGEVHPIRPGTMYAL 87 (125)
T ss_pred EEEEEEeCEEEEEEcCCCEEEEeCCCeEEEE
Confidence 6999999999999 7 477777777755444
No 244
>COG3450 Predicted enzyme of the cupin superfamily [General function prediction only]
Probab=22.93 E-value=88 Score=26.82 Aligned_cols=31 Identities=42% Similarity=0.519 Sum_probs=21.1
Q ss_pred ccCcccceEEEEEeeEEEEEE-cCCcceeecC
Q psy4847 264 KRNKPVDYFVLILEGRAEVVV-GKENLVYEAG 294 (396)
Q Consensus 264 ~~g~~~d~f~LIL~Grv~V~~-G~e~~~~E~g 294 (396)
+...+-+-|+=||+|+++++- |.|-..+++|
T Consensus 58 r~~y~~~E~chil~G~v~~T~d~Ge~v~~~aG 89 (116)
T COG3450 58 RVTYDEDEFCHILEGRVEVTPDGGEPVEVRAG 89 (116)
T ss_pred eEEcccceEEEEEeeEEEEECCCCeEEEEcCC
Confidence 333344889999999999987 4444444444
No 245
>PHA00728 hypothetical protein
Probab=21.92 E-value=35 Score=29.42 Aligned_cols=55 Identities=15% Similarity=0.325 Sum_probs=40.5
Q ss_pred CCHHHHHHHHHHhcccccccccccccCCCEEEEeCCCChhHHHHHHHHHcCCcEEEEEeC
Q psy4847 26 LEKDEVNIISGALELRRKIVGDVMTKLEDVYMLSYDAILDFETVSEIMKSGYSRIPVYED 85 (396)
Q Consensus 26 l~~~E~~~i~~alel~~~tV~dIMtp~~dv~~l~~d~~l~~e~i~~i~~~g~sriPV~~~ 85 (396)
=+.++..-|.+-.....+.+.++..|.+-+|.++.+. +--.+....+.|+|.|=+
T Consensus 34 ~~~e~lqEiEnPYTVTNRaIsElV~PkDTMfYLsgnq-----isLILtAfEfarLP~YFg 88 (151)
T PHA00728 34 EEDEELQEIENPYTVTNRAISELVEPKDTMFYLSGNQ-----ISLILTAFEFARLPAYFG 88 (151)
T ss_pred hhhhhHHHhcCCceehhHHHHHhcCCccceEEecCCc-----hhhHHHHHHHhhchhhhC
Confidence 3556677888888888889999999998888888763 222334556778888854
No 246
>KOG0476|consensus
Probab=21.58 E-value=79 Score=35.46 Aligned_cols=58 Identities=16% Similarity=0.225 Sum_probs=45.3
Q ss_pred ccccccccccccCCCEEEEeCCCChhHHHHHHHHHcCCcEEEEEeCCC-CcEEEEEEhhhhc
Q psy4847 40 LRRKIVGDVMTKLEDVYMLSYDAILDFETVSEIMKSGYSRIPVYEDRR-TNIVTMFYIKDLA 100 (396)
Q Consensus 40 l~~~tV~dIMtp~~dv~~l~~d~~l~~e~i~~i~~~g~sriPV~~~~~-~~IVGiL~vkDLl 100 (396)
.....|.++|.. +|..|..+.+.. |..+.+.......+|++++.. --++|.|..+.|.
T Consensus 585 ~h~v~VE~iMV~--dv~yI~k~~Ty~-elre~l~~~~lR~~PlV~s~esmiLlGSV~R~~L~ 643 (931)
T KOG0476|consen 585 VHTVKVEHIMVT--DVKYITKDTTYR-ELREALQTTTLRSFPLVESKESMILLGSVARRYLT 643 (931)
T ss_pred eeEEEeeeeccc--cceeeeccCcHH-HHHHHHHhCccceeccccCcccceeeehhHHHHHH
Confidence 567889999984 599999999998 666555544488999998643 3457999999885
Done!