Query psy4847
Match_columns 396
No_of_seqs 322 out of 1403
Neff 6.5
Searched_HMMs 29240
Date Fri Aug 16 19:13:58 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy4847.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/4847hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3lhh_A CBS domain protein; str 99.9 2.7E-26 9.3E-31 204.8 11.5 165 2-186 6-171 (172)
2 3oi8_A Uncharacterized protein 99.9 4.8E-25 1.7E-29 193.4 15.2 155 1-174 1-156 (156)
3 3ocm_A Putative membrane prote 99.9 1.1E-24 3.8E-29 195.5 12.7 152 20-187 13-165 (173)
4 3lv9_A Putative transporter; C 99.9 2.5E-23 8.7E-28 180.0 11.3 145 22-181 2-147 (148)
5 3oco_A Hemolysin-like protein 99.9 1.6E-23 5.4E-28 182.7 6.8 148 25-187 2-151 (153)
6 3lfr_A Putative metal ION tran 99.9 5.4E-22 1.9E-26 169.8 10.7 131 42-187 2-135 (136)
7 3jtf_A Magnesium and cobalt ef 99.9 4.8E-21 1.6E-25 162.3 13.0 127 40-181 2-128 (129)
8 3hf7_A Uncharacterized CBS-dom 99.8 9.8E-21 3.3E-25 161.0 11.3 128 42-181 1-129 (130)
9 3k6e_A CBS domain protein; str 99.8 4.4E-21 1.5E-25 169.3 9.1 130 32-177 3-141 (156)
10 3kxr_A Magnesium transporter, 99.8 1.7E-19 5.9E-24 166.3 17.4 138 26-182 37-177 (205)
11 3nqr_A Magnesium and cobalt ef 99.8 9.3E-20 3.2E-24 153.7 12.1 122 42-177 2-125 (127)
12 3i8n_A Uncharacterized protein 99.8 4.2E-20 1.4E-24 156.5 9.7 125 39-177 2-128 (130)
13 2yvy_A MGTE, Mg2+ transporter 99.8 1.7E-18 5.9E-23 166.1 13.3 157 3-183 91-261 (278)
14 2zy9_A Mg2+ transporter MGTE; 99.7 1.1E-17 3.8E-22 172.7 14.6 156 3-182 111-280 (473)
15 4esy_A CBS domain containing m 99.7 8.1E-18 2.8E-22 149.1 10.1 130 30-178 7-162 (170)
16 2oux_A Magnesium transporter; 99.7 7.6E-17 2.6E-21 155.7 15.6 157 3-177 96-258 (286)
17 4gqw_A CBS domain-containing p 99.7 1.7E-16 5.8E-21 136.0 11.9 123 41-177 3-142 (152)
18 2yzi_A Hypothetical protein PH 99.7 2.9E-16 9.9E-21 133.3 12.7 129 38-184 2-134 (138)
19 2emq_A Hypothetical conserved 99.7 2.8E-16 9.5E-21 136.2 11.9 131 35-182 3-142 (157)
20 3lqn_A CBS domain protein; csg 99.7 1.7E-16 5.8E-21 136.8 10.1 123 39-177 11-142 (150)
21 3ctu_A CBS domain protein; str 99.7 9.5E-17 3.2E-21 139.5 7.9 127 35-177 7-141 (156)
22 2qrd_G Protein C1556.08C; AMPK 99.7 1.9E-16 6.5E-21 154.0 10.4 143 25-177 3-171 (334)
23 2ef7_A Hypothetical protein ST 99.7 4.2E-16 1.4E-20 131.4 11.0 121 40-177 1-124 (133)
24 3kpb_A Uncharacterized protein 99.7 2.6E-16 9E-21 130.5 9.1 119 43-177 1-119 (122)
25 2p9m_A Hypothetical protein MJ 99.7 7.6E-16 2.6E-20 130.4 11.9 122 40-177 5-135 (138)
26 3sl7_A CBS domain-containing p 99.6 4.2E-16 1.4E-20 137.7 10.3 122 42-177 3-155 (180)
27 1yav_A Hypothetical protein BS 99.6 5.9E-16 2E-20 135.0 10.4 128 39-183 10-146 (159)
28 3gby_A Uncharacterized protein 99.6 7.9E-16 2.7E-20 129.5 10.1 120 41-177 3-125 (128)
29 3fhm_A Uncharacterized protein 99.6 2.6E-16 8.9E-21 138.5 7.3 130 39-184 20-155 (165)
30 3k2v_A Putative D-arabinose 5- 99.6 2.9E-16 9.9E-21 135.7 7.3 134 26-174 8-148 (149)
31 2rih_A Conserved protein with 99.6 1.3E-15 4.4E-20 130.1 11.0 118 43-177 5-127 (141)
32 2v8q_E 5'-AMP-activated protei 99.6 7.9E-16 2.7E-20 149.5 10.6 146 20-177 14-176 (330)
33 2rc3_A CBS domain; in SITU pro 99.6 1.8E-15 6E-20 128.1 10.3 118 44-177 7-130 (135)
34 3t4n_C Nuclear protein SNF4; C 99.6 6.2E-16 2.1E-20 149.6 8.4 148 20-177 6-176 (323)
35 1pvm_A Conserved hypothetical 99.6 1.9E-15 6.5E-20 135.4 9.0 124 43-183 9-138 (184)
36 4fry_A Putative signal-transdu 99.6 3.7E-15 1.3E-19 129.5 10.2 125 43-184 7-140 (157)
37 1o50_A CBS domain-containing p 99.6 6.3E-15 2.1E-19 128.4 11.6 120 40-177 13-152 (157)
38 1y5h_A Hypothetical protein RV 99.6 1.9E-15 6.5E-20 127.4 7.9 121 40-177 5-130 (133)
39 3fv6_A YQZB protein; CBS domai 99.6 6.3E-15 2.2E-19 128.8 11.0 131 32-183 8-147 (159)
40 2o16_A Acetoin utilization pro 99.6 5.7E-15 1.9E-19 129.4 10.7 120 41-177 3-134 (160)
41 2nyc_A Nuclear protein SNF4; b 99.6 6.6E-15 2.3E-19 125.1 10.6 126 39-177 4-140 (144)
42 2j9l_A Chloride channel protei 99.6 4E-15 1.4E-19 132.2 9.5 124 40-177 8-164 (185)
43 1pbj_A Hypothetical protein; s 99.6 6.7E-15 2.3E-19 122.3 9.6 117 43-177 1-121 (125)
44 2pfi_A Chloride channel protei 99.6 1E-14 3.5E-19 126.8 9.9 127 35-177 5-146 (164)
45 2uv4_A 5'-AMP-activated protei 99.5 3.1E-14 1.1E-18 123.3 10.0 123 40-177 20-150 (152)
46 3ddj_A CBS domain-containing p 99.5 7.2E-14 2.5E-18 133.4 12.3 128 34-177 84-213 (296)
47 1vr9_A CBS domain protein/ACT 99.5 3.3E-13 1.1E-17 124.3 13.8 119 41-177 11-129 (213)
48 1zfj_A Inosine monophosphate d 99.5 2E-13 6.7E-18 141.2 13.4 153 3-177 55-210 (491)
49 3kh5_A Protein MJ1225; AMPK, A 99.5 3.5E-14 1.2E-18 133.5 7.1 119 42-177 83-204 (280)
50 3usb_A Inosine-5'-monophosphat 99.5 2.4E-13 8.4E-18 141.6 13.9 153 3-177 78-233 (511)
51 3t4n_C Nuclear protein SNF4; C 99.5 2.3E-13 7.8E-18 131.5 12.1 123 40-178 184-320 (323)
52 4fxs_A Inosine-5'-monophosphat 99.5 2.3E-14 7.8E-19 148.8 4.4 153 3-177 54-208 (496)
53 3ddj_A CBS domain-containing p 99.4 8.4E-14 2.9E-18 133.0 7.6 126 40-182 153-288 (296)
54 3kh5_A Protein MJ1225; AMPK, A 99.4 5.5E-13 1.9E-17 125.3 12.6 119 44-177 4-141 (280)
55 3pc3_A CG1753, isoform A; CBS, 99.4 2.4E-13 8.2E-18 141.9 10.0 122 40-178 381-511 (527)
56 3org_A CMCLC; transporter, tra 99.4 2.4E-14 8.1E-19 152.7 2.4 125 41-177 451-624 (632)
57 2yzq_A Putative uncharacterize 99.4 3.8E-13 1.3E-17 126.9 8.2 117 43-177 1-118 (282)
58 1me8_A Inosine-5'-monophosphat 99.4 1.1E-13 3.6E-18 144.0 2.5 154 3-178 62-221 (503)
59 3l2b_A Probable manganase-depe 99.4 8.5E-13 2.9E-17 123.3 8.0 122 42-176 6-242 (245)
60 2cu0_A Inosine-5'-monophosphat 99.3 1.8E-13 6.2E-18 141.6 2.5 149 3-177 58-207 (486)
61 2qrd_G Protein C1556.08C; AMPK 99.3 6.1E-12 2.1E-16 122.0 12.6 122 41-177 180-314 (334)
62 2yzq_A Putative uncharacterize 99.3 2.6E-12 8.9E-17 121.2 9.7 121 41-177 124-278 (282)
63 4avf_A Inosine-5'-monophosphat 99.3 2.5E-13 8.5E-18 140.8 1.8 152 3-177 53-206 (490)
64 2v8q_E 5'-AMP-activated protei 99.3 1.4E-11 4.9E-16 119.3 13.0 124 42-177 189-322 (330)
65 2d4z_A Chloride channel protei 99.3 2.9E-12 1E-16 121.8 7.8 125 40-177 10-245 (250)
66 1vrd_A Inosine-5'-monophosphat 99.1 9E-12 3.1E-16 128.9 0.0 132 24-177 80-214 (494)
67 1jcn_A Inosine monophosphate d 98.9 4E-11 1.4E-15 124.7 -5.1 120 43-177 108-232 (514)
68 4af0_A Inosine-5'-monophosphat 98.8 6.4E-10 2.2E-14 114.9 1.8 126 29-176 129-256 (556)
69 3mdp_A Cyclic nucleotide-bindi 98.6 1.3E-07 4.3E-12 79.2 9.1 97 240-369 18-121 (142)
70 1wgp_A Probable cyclic nucleot 98.6 3.6E-07 1.2E-11 76.3 10.5 102 240-369 18-128 (137)
71 3idb_B CAMP-dependent protein 98.5 2.7E-07 9.2E-12 79.6 9.4 99 240-371 50-151 (161)
72 2pqq_A Putative transcriptiona 98.5 1.6E-07 5.5E-12 79.0 7.5 96 240-368 17-116 (149)
73 2z69_A DNR protein; beta barre 98.5 7.9E-07 2.7E-11 75.3 10.6 96 240-367 24-123 (154)
74 4f8a_A Potassium voltage-gated 98.5 5.7E-07 1.9E-11 76.8 9.5 98 240-369 39-136 (160)
75 3pna_A CAMP-dependent protein 98.4 5.4E-07 1.9E-11 77.2 8.8 99 240-372 50-148 (154)
76 3ocp_A PRKG1 protein; serine/t 98.4 6.3E-07 2.2E-11 75.2 8.2 95 240-368 35-129 (139)
77 2oz6_A Virulence factor regula 98.4 1.1E-06 3.8E-11 78.4 9.3 98 241-367 3-104 (207)
78 3gyd_A CNMP-BD protein, cyclic 98.4 6.7E-07 2.3E-11 79.7 7.8 96 240-368 51-150 (187)
79 2ptm_A Hyperpolarization-activ 98.4 1E-06 3.5E-11 78.8 8.8 96 240-368 83-178 (198)
80 3of1_A CAMP-dependent protein 98.4 8.1E-07 2.8E-11 81.2 8.2 96 240-368 137-232 (246)
81 1vp6_A CNBD, cyclic-nucleotide 98.3 1.1E-06 3.7E-11 73.3 7.6 93 240-368 23-115 (138)
82 3iwz_A CAP-like, catabolite ac 98.3 1.8E-06 6.2E-11 78.3 9.7 97 240-368 23-123 (230)
83 3ryp_A Catabolite gene activat 98.3 1.6E-06 5.4E-11 77.6 9.1 97 240-368 8-108 (210)
84 4ev0_A Transcription regulator 98.3 1.7E-06 5.8E-11 77.7 9.0 96 240-368 11-110 (216)
85 3kcc_A Catabolite gene activat 98.3 1.8E-06 6.2E-11 80.8 9.1 97 240-368 58-158 (260)
86 3bpz_A Potassium/sodium hyperp 98.3 2.2E-06 7.6E-11 76.9 8.8 95 240-368 84-178 (202)
87 2gau_A Transcriptional regulat 98.3 2.3E-06 8E-11 77.9 9.0 96 240-368 22-121 (232)
88 3dn7_A Cyclic nucleotide bindi 98.3 2.5E-06 8.7E-11 75.5 8.9 96 240-368 19-119 (194)
89 3tnp_B CAMP-dependent protein 98.3 2.5E-06 8.6E-11 86.1 9.9 102 240-374 157-261 (416)
90 2d93_A RAP guanine nucleotide 98.3 8.9E-07 3E-11 74.0 5.4 94 240-367 28-123 (134)
91 3e97_A Transcriptional regulat 98.2 2E-06 6.7E-11 78.3 8.1 96 240-368 18-117 (231)
92 1zyb_A Transcription regulator 98.2 2.5E-06 8.6E-11 78.2 8.7 95 240-366 30-130 (232)
93 3fx3_A Cyclic nucleotide-bindi 98.2 2.8E-06 9.5E-11 77.6 9.0 96 240-368 23-122 (237)
94 3ukn_A Novel protein similar t 98.2 3E-06 1E-10 76.5 9.1 98 240-369 87-184 (212)
95 3of1_A CAMP-dependent protein 98.2 1.7E-06 5.8E-11 79.0 7.5 95 240-368 19-113 (246)
96 3dv8_A Transcriptional regulat 98.2 4.3E-06 1.5E-10 75.2 9.9 96 240-368 15-116 (220)
97 3d0s_A Transcriptional regulat 98.2 1.3E-06 4.6E-11 79.2 6.4 94 240-366 18-115 (227)
98 3shr_A CGMP-dependent protein 98.2 4.1E-06 1.4E-10 79.5 9.8 98 240-371 51-148 (299)
99 2qcs_B CAMP-dependent protein 98.2 4.7E-06 1.6E-10 78.5 10.0 96 240-369 51-146 (291)
100 3dkw_A DNR protein; CRP-FNR, H 98.2 2.1E-06 7.2E-11 77.7 7.1 96 240-367 21-120 (227)
101 3shr_A CGMP-dependent protein 98.2 3.3E-06 1.1E-10 80.1 8.7 96 240-368 169-269 (299)
102 2qcs_B CAMP-dependent protein 98.2 5.5E-06 1.9E-10 78.0 10.1 95 241-368 170-269 (291)
103 4f7z_A RAP guanine nucleotide 98.2 3.9E-06 1.3E-10 93.5 9.8 79 258-369 368-447 (999)
104 3la7_A Global nitrogen regulat 98.1 5E-06 1.7E-10 76.8 8.4 96 241-367 30-132 (243)
105 3ghd_A A cystathionine beta-sy 98.1 3.7E-06 1.3E-10 64.1 6.2 63 55-123 2-69 (70)
106 4din_B CAMP-dependent protein 98.1 5.4E-06 1.8E-10 82.5 9.2 97 240-370 142-238 (381)
107 4ava_A Lysine acetyltransferas 98.1 4.8E-06 1.6E-10 80.3 8.4 94 240-367 25-122 (333)
108 3l2b_A Probable manganase-depe 98.1 2.2E-06 7.4E-11 79.6 5.3 60 40-102 182-241 (245)
109 4din_B CAMP-dependent protein 98.1 1.5E-05 5.1E-10 79.3 11.6 95 241-368 261-360 (381)
110 3fio_A A cystathionine beta-sy 98.1 5.2E-06 1.8E-10 61.6 5.8 58 55-115 2-64 (70)
111 3tnp_B CAMP-dependent protein 98.1 8.3E-06 2.8E-10 82.2 8.8 96 240-368 279-384 (416)
112 1o5l_A Transcriptional regulat 98.1 8.4E-06 2.9E-10 73.6 7.9 89 247-367 18-110 (213)
113 1vr9_A CBS domain protein/ACT 98.0 2.2E-06 7.6E-11 78.3 4.0 100 42-149 71-170 (213)
114 1o7f_A CAMP-dependent RAP1 gua 98.0 1.4E-05 4.8E-10 80.7 10.2 96 240-368 349-446 (469)
115 4f7z_A RAP guanine nucleotide 98.0 1.6E-05 5.4E-10 88.6 11.4 96 240-369 54-155 (999)
116 3e6c_C CPRK, cyclic nucleotide 98.0 6.3E-06 2.1E-10 76.2 6.1 92 241-368 22-117 (250)
117 4esy_A CBS domain containing m 97.9 6.5E-06 2.2E-10 72.0 4.9 58 40-102 102-159 (170)
118 3kpb_A Uncharacterized protein 97.9 1.8E-05 6.3E-10 64.5 6.7 72 23-101 45-116 (122)
119 2bgc_A PRFA; bacterial infecti 97.9 3.7E-05 1.3E-09 70.5 9.1 95 241-367 6-107 (238)
120 3fv6_A YQZB protein; CBS domai 97.9 1.6E-05 5.4E-10 68.6 6.1 61 39-101 77-140 (159)
121 2fmy_A COOA, carbon monoxide o 97.9 1.5E-05 5.2E-10 72.0 6.1 85 243-367 19-106 (220)
122 3b02_A Transcriptional regulat 97.9 1.7E-05 5.9E-10 70.4 6.3 73 257-363 5-81 (195)
123 1o7f_A CAMP-dependent RAP1 gua 97.9 3.9E-05 1.3E-09 77.4 9.7 96 240-369 54-155 (469)
124 1pbj_A Hypothetical protein; s 97.8 2.2E-05 7.5E-10 64.2 5.7 74 23-101 44-118 (125)
125 4gqw_A CBS domain-containing p 97.8 1.6E-05 5.4E-10 67.1 4.6 57 41-101 83-139 (152)
126 3fio_A A cystathionine beta-sy 97.8 3.1E-05 1.1E-09 57.3 5.6 49 120-178 1-49 (70)
127 2ef7_A Hypothetical protein ST 97.8 2.5E-05 8.6E-10 64.8 5.7 75 23-101 47-121 (133)
128 1ft9_A Carbon monoxide oxidati 97.8 1.9E-05 6.6E-10 71.4 5.0 84 244-367 16-102 (222)
129 4fry_A Putative signal-transdu 97.8 1.8E-05 6E-10 67.9 4.3 57 40-101 75-131 (157)
130 3lfr_A Putative metal ION tran 97.7 3.4E-05 1.2E-09 64.8 5.9 58 40-102 67-124 (136)
131 2rc3_A CBS domain; in SITU pro 97.7 4.5E-05 1.6E-09 63.4 6.6 72 23-101 52-127 (135)
132 3lhh_A CBS domain protein; str 97.7 8.9E-05 3E-09 65.0 8.4 71 24-101 90-160 (172)
133 1pvm_A Conserved hypothetical 97.7 7E-05 2.4E-09 66.2 7.7 74 24-103 54-131 (184)
134 3jtf_A Magnesium and cobalt ef 97.7 3.7E-05 1.3E-09 63.9 5.5 56 41-101 67-122 (129)
135 2rih_A Conserved protein with 97.7 5.4E-05 1.9E-09 63.6 6.6 71 24-101 52-124 (141)
136 3sl7_A CBS domain-containing p 97.7 2.3E-05 7.8E-10 68.3 4.2 58 40-101 95-152 (180)
137 3lv9_A Putative transporter; C 97.7 8.1E-05 2.8E-09 63.1 7.5 71 24-101 71-141 (148)
138 3nqr_A Magnesium and cobalt ef 97.7 4.2E-05 1.4E-09 63.3 5.3 56 41-101 67-122 (127)
139 3oco_A Hemolysin-like protein 97.7 7.6E-05 2.6E-09 63.8 7.0 72 23-101 68-139 (153)
140 3fhm_A Uncharacterized protein 97.7 6.1E-05 2.1E-09 65.3 6.4 75 23-102 71-147 (165)
141 1o50_A CBS domain-containing p 97.7 2.8E-05 9.7E-10 66.8 4.2 57 40-101 93-149 (157)
142 1y5h_A Hypothetical protein RV 97.7 3.9E-05 1.3E-09 63.6 4.8 58 40-102 71-128 (133)
143 2nyc_A Nuclear protein SNF4; b 97.6 4.4E-05 1.5E-09 63.8 4.8 76 24-101 56-137 (144)
144 3gby_A Uncharacterized protein 97.6 3.5E-05 1.2E-09 63.8 4.1 55 43-101 68-122 (128)
145 3oi8_A Uncharacterized protein 97.6 5.3E-05 1.8E-09 65.2 5.4 55 41-100 101-155 (156)
146 2uv4_A 5'-AMP-activated protei 97.6 5.8E-05 2E-09 64.4 5.5 59 41-101 85-147 (152)
147 3i8n_A Uncharacterized protein 97.6 7.7E-05 2.6E-09 61.9 5.4 73 23-101 53-125 (130)
148 3ghd_A A cystathionine beta-sy 97.6 9.8E-05 3.4E-09 56.0 5.4 47 121-177 2-48 (70)
149 2o16_A Acetoin utilization pro 97.6 6.5E-05 2.2E-09 64.8 5.1 57 40-101 75-131 (160)
150 3cf6_E RAP guanine nucleotide 97.5 0.00016 5.6E-09 77.7 8.8 96 240-368 44-141 (694)
151 2p9m_A Hypothetical protein MJ 97.5 5.2E-05 1.8E-09 63.1 3.8 58 40-101 70-132 (138)
152 3kxr_A Magnesium transporter, 97.5 9.1E-05 3.1E-09 67.4 5.7 59 40-102 113-171 (205)
153 3lqn_A CBS domain protein; csg 97.5 0.0001 3.6E-09 62.3 5.7 56 40-101 84-139 (150)
154 3hf7_A Uncharacterized CBS-dom 97.5 7.3E-05 2.5E-09 62.4 4.6 56 41-101 68-123 (130)
155 3k2v_A Putative D-arabinose 5- 97.5 0.00018 6.1E-09 61.1 6.9 57 109-177 29-87 (149)
156 2j9l_A Chloride channel protei 97.5 0.00013 4.6E-09 63.7 5.8 57 40-101 105-161 (185)
157 1me8_A Inosine-5'-monophosphat 97.5 5.6E-05 1.9E-09 78.3 3.7 102 41-148 159-260 (503)
158 2yzi_A Hypothetical protein PH 97.4 0.00024 8E-09 59.1 6.4 57 109-177 8-64 (138)
159 3ctu_A CBS domain protein; str 97.4 0.00017 5.8E-09 61.5 5.6 60 109-178 16-75 (156)
160 2emq_A Hypothetical conserved 97.4 0.00017 5.8E-09 61.4 5.4 55 41-101 81-135 (157)
161 2zcw_A TTHA1359, transcription 97.4 7.8E-05 2.7E-09 66.4 3.2 76 252-362 6-87 (202)
162 3k6e_A CBS domain protein; str 97.3 0.00028 9.6E-09 61.2 5.6 60 110-179 17-76 (156)
163 2pfi_A Chloride channel protei 97.3 0.00048 1.6E-08 58.8 6.7 58 108-177 13-72 (164)
164 2yvy_A MGTE, Mg2+ transporter 97.2 0.00025 8.6E-09 67.2 5.3 59 40-102 196-254 (278)
165 1yav_A Hypothetical protein BS 97.2 0.00034 1.2E-08 59.9 5.4 58 108-177 14-73 (159)
166 3beh_A MLL3241 protein; transm 97.2 5.4E-05 1.9E-09 74.2 0.0 91 242-368 242-332 (355)
167 3usb_A Inosine-5'-monophosphat 97.1 0.00063 2.2E-08 70.6 7.4 104 40-149 172-275 (511)
168 2oux_A Magnesium transporter; 97.1 0.00032 1.1E-08 67.1 4.7 59 40-102 198-256 (286)
169 3ocm_A Putative membrane prote 96.9 0.00097 3.3E-08 58.7 5.7 70 24-101 84-153 (173)
170 3org_A CMCLC; transporter, tra 96.9 0.0011 3.6E-08 70.6 6.5 56 44-104 569-624 (632)
171 2zy9_A Mg2+ transporter MGTE; 96.8 0.0011 3.8E-08 68.0 5.4 59 40-102 216-274 (473)
172 2d4z_A Chloride channel protei 96.8 0.0018 6.3E-08 61.0 6.4 58 108-177 13-72 (250)
173 4avf_A Inosine-5'-monophosphat 96.6 0.00037 1.3E-08 72.0 0.0 60 41-102 145-204 (490)
174 4fxs_A Inosine-5'-monophosphat 96.4 0.00049 1.7E-08 71.2 -0.5 60 41-102 147-206 (496)
175 3pc3_A CG1753, isoform A; CBS, 96.3 0.0033 1.1E-07 65.1 5.6 57 113-178 386-444 (527)
176 1vrd_A Inosine-5'-monophosphat 96.2 0.00076 2.6E-08 69.4 -0.1 59 42-102 154-212 (494)
177 4af0_A Inosine-5'-monophosphat 96.0 0.0011 3.7E-08 68.8 0.0 58 41-102 198-255 (556)
178 1zfj_A Inosine monophosphate d 96.0 0.0071 2.4E-07 61.9 5.8 58 41-101 150-207 (491)
179 2cu0_A Inosine-5'-monophosphat 95.7 0.0034 1.2E-07 64.5 2.0 58 42-103 149-206 (486)
180 1jcn_A Inosine monophosphate d 95.7 0.0015 5.1E-08 67.6 -0.7 60 41-102 171-230 (514)
181 3rns_A Cupin 2 conserved barre 72.7 5.8 0.0002 35.8 6.1 34 261-294 49-82 (227)
182 2opk_A Hypothetical protein; p 66.4 3.9 0.00013 32.7 3.1 34 267-300 51-86 (112)
183 2ozj_A Cupin 2, conserved barr 59.9 7.4 0.00025 30.5 3.6 33 267-299 56-88 (114)
184 1o5u_A Novel thermotoga mariti 57.6 10 0.00036 29.9 4.1 34 267-300 47-81 (101)
185 2vpv_A Protein MIF2, MIF2P; nu 55.1 8.3 0.00028 33.7 3.4 33 267-299 108-140 (166)
186 3lwc_A Uncharacterized protein 53.4 10 0.00034 30.8 3.4 27 268-294 58-84 (119)
187 2pyt_A Ethanolamine utilizatio 52.6 11 0.00039 31.2 3.7 27 268-294 74-100 (133)
188 3bcw_A Uncharacterized protein 50.3 12 0.00041 30.7 3.4 26 270-295 69-95 (123)
189 3fjs_A Uncharacterized protein 47.6 11 0.00038 29.9 2.8 30 267-296 54-83 (114)
190 1yhf_A Hypothetical protein SP 47.0 15 0.00052 28.5 3.5 33 267-299 58-90 (115)
191 2b8m_A Hypothetical protein MJ 45.9 20 0.00068 28.1 4.0 36 268-303 46-82 (117)
192 2pfw_A Cupin 2, conserved barr 44.9 15 0.00052 28.5 3.2 29 268-296 53-81 (116)
193 1v70_A Probable antibiotics sy 44.3 13 0.00046 27.8 2.7 31 269-299 49-79 (105)
194 4e2g_A Cupin 2 conserved barre 43.6 14 0.00048 29.3 2.8 30 267-296 59-88 (126)
195 2gu9_A Tetracenomycin polyketi 43.4 14 0.00048 28.3 2.7 31 269-299 44-74 (113)
196 3d82_A Cupin 2, conserved barr 42.1 22 0.00076 26.7 3.6 25 270-294 51-75 (102)
197 3kgz_A Cupin 2 conserved barre 40.3 22 0.00077 30.2 3.7 36 268-303 63-98 (156)
198 1y9q_A Transcriptional regulat 39.7 18 0.0006 31.2 3.0 37 267-303 124-160 (192)
199 3h8u_A Uncharacterized conserv 39.4 18 0.00061 28.7 2.8 33 269-301 60-93 (125)
200 2bnm_A Epoxidase; oxidoreducta 39.0 19 0.00066 31.1 3.2 34 267-300 138-175 (198)
201 1sef_A Conserved hypothetical 37.8 17 0.00057 33.7 2.7 35 269-303 84-118 (274)
202 1sfn_A Conserved hypothetical 37.7 19 0.00063 32.9 3.0 35 269-303 68-102 (246)
203 2fqp_A Hypothetical protein BP 37.5 17 0.00059 27.7 2.3 28 268-295 37-67 (97)
204 1rc6_A Hypothetical protein YL 37.4 17 0.0006 33.2 2.7 36 268-303 80-115 (261)
205 3ibm_A Cupin 2, conserved barr 37.3 24 0.00083 30.1 3.5 34 268-301 75-108 (167)
206 3l2h_A Putative sugar phosphat 35.5 24 0.00083 29.5 3.2 34 268-301 67-100 (162)
207 4e2q_A Ureidoglycine aminohydr 35.0 20 0.00068 33.7 2.7 38 266-303 87-125 (266)
208 3es1_A Cupin 2, conserved barr 35.0 22 0.00076 31.0 2.9 30 268-299 98-128 (172)
209 1vj2_A Novel manganese-contain 35.0 26 0.0009 28.0 3.2 32 268-299 67-98 (126)
210 1o4t_A Putative oxalate decarb 34.6 23 0.00078 28.8 2.7 32 269-300 78-109 (133)
211 4axo_A EUTQ, ethanolamine util 34.5 30 0.001 29.6 3.5 30 268-297 83-112 (151)
212 2o8q_A Hypothetical protein; c 34.4 30 0.001 27.7 3.4 31 270-300 65-96 (134)
213 2i45_A Hypothetical protein; n 34.4 19 0.00065 27.7 2.1 26 269-294 48-74 (107)
214 2oa2_A BH2720 protein; 1017534 33.7 32 0.0011 28.4 3.6 33 268-300 63-101 (148)
215 1sfn_A Conserved hypothetical 33.2 34 0.0012 31.1 4.0 37 267-303 184-220 (246)
216 3i7d_A Sugar phosphate isomera 33.1 25 0.00086 29.8 2.9 34 269-302 65-98 (163)
217 3rns_A Cupin 2 conserved barre 31.8 30 0.001 31.0 3.3 32 267-298 171-202 (227)
218 3es4_A Uncharacterized protein 31.8 35 0.0012 27.9 3.4 31 268-299 60-90 (116)
219 1sq4_A GLXB, glyoxylate-induce 31.2 26 0.00089 32.7 2.9 37 267-303 88-124 (278)
220 3jzv_A Uncharacterized protein 30.0 35 0.0012 29.3 3.3 33 268-300 72-104 (166)
221 4i4a_A Similar to unknown prot 30.0 40 0.0014 26.5 3.5 34 268-301 53-86 (128)
222 2f4p_A Hypothetical protein TM 29.7 50 0.0017 27.3 4.2 33 268-300 67-100 (147)
223 2q30_A Uncharacterized protein 29.1 27 0.00092 26.6 2.2 24 272-295 58-82 (110)
224 3ht1_A REMF protein; cupin fol 28.9 33 0.0011 27.6 2.8 33 269-301 59-93 (145)
225 3h7j_A Bacilysin biosynthesis 28.4 27 0.00094 31.5 2.4 36 268-303 165-200 (243)
226 3h7j_A Bacilysin biosynthesis 27.1 46 0.0016 30.0 3.7 37 267-303 52-89 (243)
227 1sef_A Conserved hypothetical 26.4 47 0.0016 30.6 3.7 37 268-304 202-238 (274)
228 3myx_A Uncharacterized protein 26.1 46 0.0016 30.7 3.5 35 267-301 63-97 (238)
229 3cew_A Uncharacterized cupin p 24.0 51 0.0017 26.0 3.0 32 271-302 49-81 (125)
230 1lr5_A Auxin binding protein 1 22.9 45 0.0015 27.8 2.6 19 268-286 60-78 (163)
231 1rc6_A Hypothetical protein YL 22.9 48 0.0016 30.2 3.0 36 268-303 199-234 (261)
232 1y3t_A Hypothetical protein YX 22.1 52 0.0018 30.7 3.1 34 269-302 67-100 (337)
No 1
>3lhh_A CBS domain protein; structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG, cell membrane; HET: MSE AMP; 2.10A {Shewanella oneidensis}
Probab=99.93 E-value=2.7e-26 Score=204.78 Aligned_cols=165 Identities=23% Similarity=0.408 Sum_probs=110.1
Q ss_pred CCCHHHHHHHHHccccccccccCCCCHHHHHHHHHHhcccccccccccccCCCEEEEeCCCChhHHHHHHHHHcCCcEEE
Q psy4847 2 CVHPQGLRSFIRVRDHDVTTEFNDLEKDEVNIISGALELRRKIVGDVMTKLEDVYMLSYDAILDFETVSEIMKSGYSRIP 81 (396)
Q Consensus 2 ~~~~~Elk~ll~~~~~~~~~e~~~l~~~E~~~i~~alel~~~tV~dIMtp~~dv~~l~~d~~l~~e~i~~i~~~g~sriP 81 (396)
.+|++||+.+++.+ .+.|.|+++|++++.+++.|.+.+|+++|+|+.+++++++++++. ++++.|.+++++++|
T Consensus 6 ~~t~~el~~l~~~~-----~~~g~l~~~e~~~i~~~~~l~~~~v~diM~~~~~~~~v~~~~~v~-~a~~~m~~~~~~~~p 79 (172)
T 3lhh_A 6 NVTQEDIQAMLQEG-----SSAGVIEHNEHAMVKNVFRLDERTISSLMVPRSDIVFLDLNLPLD-ANLRTVMQSPHSRFP 79 (172)
T ss_dssp ------------------------------------------CTTTTSEEGGGCCCEETTSCHH-HHHHHHHTCCCSEEE
T ss_pred cCCHHHHHHHHHHH-----HHcCCCCHHHHHHHHHHhccCCCCHHHhCccHHHeEEEcCCCCHH-HHHHHHHhCCCCEEE
Confidence 36899999999986 678999999999999999999999999999988899999999999 999999999999999
Q ss_pred EEeCCCCcEEEEEEhhhhcccCCc-cccchhhhhhhhcCCceEEcCCCCHHHHHHHHHhcCCceEEEEEEeCCCCCCCCC
Q psy4847 82 VYEDRRTNIVTMFYIKDLALVDPD-DNTPLKTLCQFYQNSCYFVFEDTTLDVLLKQFKEGIKGHMAFVHRVNNEGEGDPF 160 (396)
Q Consensus 82 V~~~~~~~IVGiL~vkDLl~~~~~-~~~~l~~v~~~~~~~v~~V~~dt~L~~~L~~f~~~~~~h~avV~~~~~~~~~De~ 160 (396)
|++++.++++|+|+.+||+..... ...++.++| +++++|++++++.+++..|.+. +.+.++|+ |++
T Consensus 80 Vvd~~~~~lvGivt~~dl~~~~~~~~~~~v~~im----~~~~~v~~~~~l~~a~~~m~~~-~~~~~pVv--------d~~ 146 (172)
T 3lhh_A 80 VCRNNVDDMVGIISAKQLLSESIAGERLELVDLV----KNCNFVPNSLSGMELLEHFRTT-GSQMVFVV--------DEY 146 (172)
T ss_dssp EESSSTTSEEEEEEHHHHHHHHHTTCCCCGGGGC----BCCEEEETTCCHHHHHHHHHHH-TCSEEEEE--------CTT
T ss_pred EEeCCCCeEEEEEEHHHHHHHHhhcCcccHHHHh----cCCeEeCCCCCHHHHHHHHHHc-CCeEEEEE--------eCC
Confidence 997654799999999999864321 234566654 6889999999999999999995 78999998 888
Q ss_pred CceeeeecHHHHHHHHHhcccccccc
Q psy4847 161 YETVGLITLEDVIEELIQAEIMDETD 186 (396)
Q Consensus 161 g~~vGIVTleDIiEeli~~eI~DE~D 186 (396)
|+++||||++||+++++ ++|.||.|
T Consensus 147 g~lvGiit~~Dil~~l~-~~~~de~~ 171 (172)
T 3lhh_A 147 GDLKGLVTLQDMMDALT-GEFFQEDG 171 (172)
T ss_dssp SCEEEEEEHHHHHHHHH-TTCC----
T ss_pred CCEEEEeeHHHHHHHHh-CCCccccC
Confidence 99999999999999999 79999976
No 2
>3oi8_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: ADN; 1.99A {Neisseria meningitidis serogroup B}
Probab=99.93 E-value=4.8e-25 Score=193.42 Aligned_cols=155 Identities=25% Similarity=0.392 Sum_probs=138.6
Q ss_pred CCCCHHHHHHHHHccccccccccCCCCHHHHHHHHHHhcccccccccccccCCCEEEEeCCCChhHHHHHHHHHcCCcEE
Q psy4847 1 MCVHPQGLRSFIRVRDHDVTTEFNDLEKDEVNIISGALELRRKIVGDVMTKLEDVYMLSYDAILDFETVSEIMKSGYSRI 80 (396)
Q Consensus 1 ~~~~~~Elk~ll~~~~~~~~~e~~~l~~~E~~~i~~alel~~~tV~dIMtp~~dv~~l~~d~~l~~e~i~~i~~~g~sri 80 (396)
+.+|++||+.+++.+ .+.|.|+++|++++.++++|.+.+|+++|+|+.+++++++++++. ++++.|.+++++++
T Consensus 1 ~~~t~~el~~li~~~-----~~~g~l~~~e~~~i~~~~~l~~~~v~diM~~~~~~~~v~~~~~i~-~a~~~m~~~~~~~~ 74 (156)
T 3oi8_A 1 SNASAEDVLNLLRQA-----HEQEVFDADTLLRLEKVLDFSDLEVRDAMITRSRMNVLKENDSIE-RITAYVIDTAHSRF 74 (156)
T ss_dssp CCCCHHHHHHHHHHH-----HHTTSSCHHHHHHHHHHHHHTTCBGGGTCEEGGGCCCEETTCCHH-HHHHHHHHHCCSEE
T ss_pred CCCCHHHHHHHHHhH-----HhcCCcCHHHHHHHHHHhccCCCCHhheeeeHHHeEEECCCCCHH-HHHHHHHHCCCCEE
Confidence 468999999999996 678999999999999999999999999999987899999999999 99999999999999
Q ss_pred EEEeCCCCcEEEEEEhhhhcccCCc-cccchhhhhhhhcCCceEEcCCCCHHHHHHHHHhcCCceEEEEEEeCCCCCCCC
Q psy4847 81 PVYEDRRTNIVTMFYIKDLALVDPD-DNTPLKTLCQFYQNSCYFVFEDTTLDVLLKQFKEGIKGHMAFVHRVNNEGEGDP 159 (396)
Q Consensus 81 PV~~~~~~~IVGiL~vkDLl~~~~~-~~~~l~~v~~~~~~~v~~V~~dt~L~~~L~~f~~~~~~h~avV~~~~~~~~~De 159 (396)
||++++.++++|+|+.+||+..... ...++.++| +++++|++++++.+++..|.+. +.+.++|+ |+
T Consensus 75 pVvd~~~~~lvGivt~~dl~~~~~~~~~~~v~~im----~~~~~v~~~~~l~~a~~~m~~~-~~~~~~Vv--------d~ 141 (156)
T 3oi8_A 75 PVIGEDKDEVLGILHAKDLLKYMFNPEQFHLKSIL----RPAVFVPEGKSLTALLKEFREQ-RNHMAIVI--------DE 141 (156)
T ss_dssp EEESSSTTCEEEEEEGGGGGGGSSCGGGCCHHHHC----BCCCEEETTSBHHHHHHHHHHT-TCCEEEEE--------CT
T ss_pred EEEcCCCCcEEEEEEHHHHHHHHHcCCcccHHHHc----CCCEEECCCCCHHHHHHHHHhc-CCeEEEEE--------CC
Confidence 9998764599999999999875433 345677775 3588999999999999999995 88999998 88
Q ss_pred CCceeeeecHHHHHH
Q psy4847 160 FYETVGLITLEDVIE 174 (396)
Q Consensus 160 ~g~~vGIVTleDIiE 174 (396)
+|+++||||++||+|
T Consensus 142 ~g~~~Givt~~Dile 156 (156)
T 3oi8_A 142 YGGTSGLVTFEDIIE 156 (156)
T ss_dssp TSSEEEEEEHHHHCC
T ss_pred CCCEEEEEEHHHhcC
Confidence 999999999999974
No 3
>3ocm_A Putative membrane protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: ADP; 1.80A {Bordetella parapertussis}
Probab=99.91 E-value=1.1e-24 Score=195.53 Aligned_cols=152 Identities=23% Similarity=0.285 Sum_probs=132.2
Q ss_pred ccccCCCCHHHHHHHHHHhcccccccccccccCCCEEEEeCCCChhHHHHHHHHHcCCcEEEEEeCCCCcEEEEEEhhhh
Q psy4847 20 TTEFNDLEKDEVNIISGALELRRKIVGDVMTKLEDVYMLSYDAILDFETVSEIMKSGYSRIPVYEDRRTNIVTMFYIKDL 99 (396)
Q Consensus 20 ~~e~~~l~~~E~~~i~~alel~~~tV~dIMtp~~dv~~l~~d~~l~~e~i~~i~~~g~sriPV~~~~~~~IVGiL~vkDL 99 (396)
+.+.|.|+++|++++.+++.|.+.+|++||+|+.+++++++++++. ++++.|.+++++++||++++.++++|+|+.+||
T Consensus 13 ~~~~g~l~~~e~~~i~~~l~l~~~~v~diM~~~~~v~~v~~~~tv~-ea~~~m~~~~~~~~pVvd~~~~~lvGivt~~Dl 91 (173)
T 3ocm_A 13 MPAVPAFGVEERNMVSGVLTLAERSIRSIMTPRTDVSWVNIDDDAA-TIRQQLTAAPHSFFPVCRGSLDEVVGIGRAKDL 91 (173)
T ss_dssp -----CCCHHHHHHHHHHHHHTTSCSTTTSEEGGGCCCEETTSCHH-HHHHHHHHSSCSEEEEESSSTTSEEEEEEHHHH
T ss_pred HHhcCCcCHHHHHHHHHHhccCCCCHHHhCCcHHHeEEEeCCCCHH-HHHHHHHhCCCCEEEEEeCCCCCEEEEEEHHHH
Confidence 3667999999999999999999999999999988899999999999 999999999999999997655799999999999
Q ss_pred cccCC-ccccchhhhhhhhcCCceEEcCCCCHHHHHHHHHhcCCceEEEEEEeCCCCCCCCCCceeeeecHHHHHHHHHh
Q psy4847 100 ALVDP-DDNTPLKTLCQFYQNSCYFVFEDTTLDVLLKQFKEGIKGHMAFVHRVNNEGEGDPFYETVGLITLEDVIEELIQ 178 (396)
Q Consensus 100 l~~~~-~~~~~l~~v~~~~~~~v~~V~~dt~L~~~L~~f~~~~~~h~avV~~~~~~~~~De~g~~vGIVTleDIiEeli~ 178 (396)
+.... ....++. + .+++++|++++++.+++..|.++ +.++++|+ |++|+++||||..||++++.
T Consensus 92 ~~~~~~~~~~~v~-~----~~~~~~v~~~~~l~~al~~m~~~-~~~~~~Vv--------de~g~lvGiIT~~Dil~~l~- 156 (173)
T 3ocm_A 92 VADLITEGRVRRN-R----LRDPIIVHESIGILRLMDTLKRS-RGQLVLVA--------DEFGAIEGLVTPIDVFEAIA- 156 (173)
T ss_dssp HHHHHHHSSCCGG-G----SBCCCEECGGGCHHHHHHHHHHS-TTCCEEEE--------CTTCCEEEEECHHHHHHHHH-
T ss_pred HHHHhcCCcchhH-h----cCCCeEECCCCcHHHHHHHHHHc-CCeEEEEE--------eCCCCEEEEEeHHHHHHHHh-
Confidence 86421 1234555 3 36889999999999999999995 88999999 88999999999999999999
Q ss_pred ccccccccc
Q psy4847 179 AEIMDETDV 187 (396)
Q Consensus 179 ~eI~DE~D~ 187 (396)
|+|.||+|.
T Consensus 157 ~~i~de~~~ 165 (173)
T 3ocm_A 157 GEFPDEDEL 165 (173)
T ss_dssp CCCCCTTSC
T ss_pred CcCCCcccc
Confidence 899999885
No 4
>3lv9_A Putative transporter; CBS domain, PSI, MCSG, structural genomics, protein structur initiative, midwest center for structural genomics; 2.40A {Clostridium difficile 630}
Probab=99.89 E-value=2.5e-23 Score=179.96 Aligned_cols=145 Identities=21% Similarity=0.405 Sum_probs=113.9
Q ss_pred ccCCCCHHHHHHHHHHhcccccccccccccCCCEEEEeCCCChhHHHHHHHHHcCCcEEEEEeCCCCcEEEEEEhhhhcc
Q psy4847 22 EFNDLEKDEVNIISGALELRRKIVGDVMTKLEDVYMLSYDAILDFETVSEIMKSGYSRIPVYEDRRTNIVTMFYIKDLAL 101 (396)
Q Consensus 22 e~~~l~~~E~~~i~~alel~~~tV~dIMtp~~dv~~l~~d~~l~~e~i~~i~~~g~sriPV~~~~~~~IVGiL~vkDLl~ 101 (396)
+.|.|+++|+.++.+++.|.+.+|+++|+|+.+++++++++++. ++++.|.+++++++||++++.++++|+|+.+||+.
T Consensus 2 ~~g~l~~~e~~~i~~~~~l~~~~v~diM~~~~~~~~v~~~~~~~-~a~~~m~~~~~~~~pVvd~~~~~lvGivt~~dl~~ 80 (148)
T 3lv9_A 2 NAGLIDESEQRLVDNIFEFEEKKIREIMVPRTDMVCIYESDSEE-KILAILKEEGVTRYPVCRKNKDDILGFVHIRDLYN 80 (148)
T ss_dssp ----------------CGGGTCBGGGTSEETTTCCCEETTCCHH-HHHHHHHHSCCSEEEEESSSTTSEEEEEEHHHHHH
T ss_pred CCCccCHHHHHHHHHHhccCCCCHHHccccHHHeEEECCCCCHH-HHHHHHHHCCCCEEEEEcCCCCcEEEEEEHHHHHH
Confidence 45889999999999999999999999999977899999999999 99999999999999999765479999999999986
Q ss_pred cCCcc-ccchhhhhhhhcCCceEEcCCCCHHHHHHHHHhcCCceEEEEEEeCCCCCCCCCCceeeeecHHHHHHHHHhcc
Q psy4847 102 VDPDD-NTPLKTLCQFYQNSCYFVFEDTTLDVLLKQFKEGIKGHMAFVHRVNNEGEGDPFYETVGLITLEDVIEELIQAE 180 (396)
Q Consensus 102 ~~~~~-~~~l~~v~~~~~~~v~~V~~dt~L~~~L~~f~~~~~~h~avV~~~~~~~~~De~g~~vGIVTleDIiEeli~~e 180 (396)
..... ..++.++| +++++|++++++.+++..|.+. +.+.++|+ |++|+++||||..||+++|+ |+
T Consensus 81 ~~~~~~~~~v~~~m----~~~~~v~~~~~l~~~~~~m~~~-~~~~l~Vv--------d~~g~~~Giit~~dil~~l~-~~ 146 (148)
T 3lv9_A 81 QKINENKIELEEIL----RDIIYISENLTIDKALERIRKE-KLQLAIVV--------DEYGGTSGVVTIEDILEEIV-GE 146 (148)
T ss_dssp HHHHHSCCCGGGTC----BCCEEEETTSBHHHHHHHHHHH-TCSEEEEE--------CTTSSEEEEEEHHHHHHHHH-HT
T ss_pred HHhcCCCccHHHhc----CCCeEECCCCCHHHHHHHHHhc-CCeEEEEE--------eCCCCEEEEEEHHHHHHHHh-Cc
Confidence 42211 34566654 6889999999999999999995 78888888 88899999999999999999 67
Q ss_pred c
Q psy4847 181 I 181 (396)
Q Consensus 181 I 181 (396)
|
T Consensus 147 i 147 (148)
T 3lv9_A 147 I 147 (148)
T ss_dssp C
T ss_pred C
Confidence 6
No 5
>3oco_A Hemolysin-like protein containing CBS domains; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; 2.20A {Oenococcus oeni}
Probab=99.88 E-value=1.6e-23 Score=182.72 Aligned_cols=148 Identities=25% Similarity=0.411 Sum_probs=118.3
Q ss_pred CCCHHHHHHHHHHhcccccccccccccCCCEEEEeCCCChhHHHHHHHHHcCCcEEEEE-eCCCCcEEEEEEhhhhcccC
Q psy4847 25 DLEKDEVNIISGALELRRKIVGDVMTKLEDVYMLSYDAILDFETVSEIMKSGYSRIPVY-EDRRTNIVTMFYIKDLALVD 103 (396)
Q Consensus 25 ~l~~~E~~~i~~alel~~~tV~dIMtp~~dv~~l~~d~~l~~e~i~~i~~~g~sriPV~-~~~~~~IVGiL~vkDLl~~~ 103 (396)
.|+++|++++.+++.|.+.+|+++|+|+.+++++++++++. ++++.|.+++++++||+ +++.++++|+|+.+||+...
T Consensus 2 ~l~~~e~~~i~~~~~l~~~~v~~iM~~~~~~~~v~~~~~~~-~a~~~m~~~~~~~~pVv~d~~~~~lvGivt~~dl~~~~ 80 (153)
T 3oco_A 2 NADEEDANFMQRAFEMNDKVASDVMVDRTSMSVVDVDETIA-DALLLYLEEQYSRFPVTADNDKDKIIGYAYNYDIVRQA 80 (153)
T ss_dssp ------CCHHHHHHHHHHCBHHHHSEEGGGCCCEETTSBHH-HHHHHHHHHCCSEEEEEETTEEEEEEEEEEHHHHHHHH
T ss_pred CcCHHHHHHHHHhcccCCCEeeeEecchhheEEEcCCCCHH-HHHHHHHhCCCCEEEEEECCCCCcEEEEEEHHHHHhHH
Confidence 47888999999999999999999999977799999999999 99999999999999999 55447999999999998542
Q ss_pred C-ccccchhhhhhhhcCCceEEcCCCCHHHHHHHHHhcCCceEEEEEEeCCCCCCCCCCceeeeecHHHHHHHHHhcccc
Q psy4847 104 P-DDNTPLKTLCQFYQNSCYFVFEDTTLDVLLKQFKEGIKGHMAFVHRVNNEGEGDPFYETVGLITLEDVIEELIQAEIM 182 (396)
Q Consensus 104 ~-~~~~~l~~v~~~~~~~v~~V~~dt~L~~~L~~f~~~~~~h~avV~~~~~~~~~De~g~~vGIVTleDIiEeli~~eI~ 182 (396)
. ....++.++| +++++|++++++.+++..|.+. +.+.++|+ |++|+++||||..||+++++ +++.
T Consensus 81 ~~~~~~~v~~~m----~~~~~v~~~~~l~~~~~~m~~~-~~~~lpVv--------d~~g~~vGivt~~dil~~l~-~~~~ 146 (153)
T 3oco_A 81 RIDDKAKISTIM----RDIVSVPENMKVPDVMEEMSAH-RVPMAIVI--------DEYGGTSGIITDKDVYEELF-GNLR 146 (153)
T ss_dssp HHHTTSBGGGTC----BCCEEEETTSBHHHHHHHHHHT-TCSCEEEE--------CTTSCEEEEECHHHHHHHHH-C---
T ss_pred hcCCCCcHHHHh----CCCeEECCCCCHHHHHHHHHHc-CCcEEEEE--------eCCCCEEEEeeHHHHHHHHh-ccCC
Confidence 1 1134556554 6889999999999999999995 78888888 88899999999999999999 8999
Q ss_pred ccccc
Q psy4847 183 DETDV 187 (396)
Q Consensus 183 DE~D~ 187 (396)
||+|.
T Consensus 147 de~~~ 151 (153)
T 3oco_A 147 DEQDD 151 (153)
T ss_dssp -----
T ss_pred CcccC
Confidence 99874
No 6
>3lfr_A Putative metal ION transporter; CBS, AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 1.53A {Pseudomonas syringae}
Probab=99.86 E-value=5.4e-22 Score=169.84 Aligned_cols=131 Identities=30% Similarity=0.481 Sum_probs=105.9
Q ss_pred ccccccccccCCCEEEEeCCCChhHHHHHHHHHcCCcEEEEEeCCCCcEEEEEEhhhhcccC---Cccccchhhhhhhhc
Q psy4847 42 RKIVGDVMTKLEDVYMLSYDAILDFETVSEIMKSGYSRIPVYEDRRTNIVTMFYIKDLALVD---PDDNTPLKTLCQFYQ 118 (396)
Q Consensus 42 ~~tV~dIMtp~~dv~~l~~d~~l~~e~i~~i~~~g~sriPV~~~~~~~IVGiL~vkDLl~~~---~~~~~~l~~v~~~~~ 118 (396)
+.+|+++|+|+.+++++++++++. ++++.|.+++++++||++++.++++|+|+.+||+... .....++.++|
T Consensus 2 ~~~v~~iM~~~~~~~~v~~~~~v~-~a~~~m~~~~~~~~pVvd~~~~~~vGivt~~dl~~~~~~~~~~~~~v~~~m---- 76 (136)
T 3lfr_A 2 DLQVRDIMVPRSQMISIKATQTPR-EFLPAVIDAAHSRYPVIGESHDDVLGVLLAKDLLPLILKADGDSDDVKKLL---- 76 (136)
T ss_dssp -CBHHHHSEEGGGCCCEETTCCHH-HHHHHHHHHCCSEEEEESSSTTCEEEEEEGGGGGGGGGSSSGGGCCGGGTC----
T ss_pred CCChHhccccHHHEEEEcCCCCHH-HHHHHHHhCCCCEEEEEcCCCCcEEEEEEHHHHHHHHHhccCCCcCHHHHc----
Confidence 678999999988899999999999 9999999999999999986547999999999998642 22334666665
Q ss_pred CCceEEcCCCCHHHHHHHHHhcCCceEEEEEEeCCCCCCCCCCceeeeecHHHHHHHHHhccccccccc
Q psy4847 119 NSCYFVFEDTTLDVLLKQFKEGIKGHMAFVHRVNNEGEGDPFYETVGLITLEDVIEELIQAEIMDETDV 187 (396)
Q Consensus 119 ~~v~~V~~dt~L~~~L~~f~~~~~~h~avV~~~~~~~~~De~g~~vGIVTleDIiEeli~~eI~DE~D~ 187 (396)
+++++|++++++.+++..|.++ +.+.++|+ |++|+++||||+.||+++|+ |++.||+|.
T Consensus 77 ~~~~~v~~~~~l~~~~~~m~~~-~~~~~~Vv--------d~~g~lvGiit~~Dil~~l~-~~~~de~~~ 135 (136)
T 3lfr_A 77 RPATFVPESKRLNVLLREFRAN-HNHMAIVI--------DEYGGVAGLVTIEDVLEQIV-GDIEDEHDV 135 (136)
T ss_dssp BCCCEEETTCBHHHHHHHHHHH-TCCEEEEE--------CTTSCEEEEEEHHHHHTTC-----------
T ss_pred CCCeEECCCCcHHHHHHHHHhc-CCeEEEEE--------eCCCCEEEEEEHHHHHHHHh-CCCcCcccC
Confidence 3588999999999999999995 78899998 88999999999999999999 799999873
No 7
>3jtf_A Magnesium and cobalt efflux protein; CBS domain, CORC, AMP, structural genomics, PSI-2, protein S initiative; HET: MSE AMP; 2.00A {Bordetella parapertussis}
Probab=99.85 E-value=4.8e-21 Score=162.29 Aligned_cols=127 Identities=31% Similarity=0.526 Sum_probs=110.1
Q ss_pred ccccccccccccCCCEEEEeCCCChhHHHHHHHHHcCCcEEEEEeCCCCcEEEEEEhhhhcccCCccccchhhhhhhhcC
Q psy4847 40 LRRKIVGDVMTKLEDVYMLSYDAILDFETVSEIMKSGYSRIPVYEDRRTNIVTMFYIKDLALVDPDDNTPLKTLCQFYQN 119 (396)
Q Consensus 40 l~~~tV~dIMtp~~dv~~l~~d~~l~~e~i~~i~~~g~sriPV~~~~~~~IVGiL~vkDLl~~~~~~~~~l~~v~~~~~~ 119 (396)
..+.+|+++|+|+.+++++++++++. ++++.|.+++++++||++++.++++|+|+.+||+........++.++| +
T Consensus 2 ~~~~~v~diM~~~~~~~~v~~~~~~~-~a~~~m~~~~~~~~pVvd~~~~~~~Givt~~dl~~~~~~~~~~v~~~m----~ 76 (129)
T 3jtf_A 2 NAERTVADIMVPRSRMDLLDISQPLP-QLLATIIETAHSRFPVYEDDRDNIIGILLAKDLLRYMLEPALDIRSLV----R 76 (129)
T ss_dssp --CCBHHHHCEEGGGCCCEETTSCHH-HHHHHHHHSCCSEEEEESSSTTCEEEEEEGGGGGGGGTCTTSCGGGGC----B
T ss_pred CCCCCHHHhCccHHHeEEECCCCCHH-HHHHHHHHcCCCEEEEEcCCCCcEEEEEEHHHHHhHhccCCcCHHHHh----C
Confidence 46789999999988899999999999 999999999999999998655799999999999865433445677775 4
Q ss_pred CceEEcCCCCHHHHHHHHHhcCCceEEEEEEeCCCCCCCCCCceeeeecHHHHHHHHHhccc
Q psy4847 120 SCYFVFEDTTLDVLLKQFKEGIKGHMAFVHRVNNEGEGDPFYETVGLITLEDVIEELIQAEI 181 (396)
Q Consensus 120 ~v~~V~~dt~L~~~L~~f~~~~~~h~avV~~~~~~~~~De~g~~vGIVTleDIiEeli~~eI 181 (396)
++.+|++++++.+++..|.+. +.+.++|+ |++|+++||||++||+++|+ |||
T Consensus 77 ~~~~v~~~~~l~~~~~~m~~~-~~~~~pVv--------d~~g~~~Giit~~Dil~~l~-gei 128 (129)
T 3jtf_A 77 PAVFIPEVKRLNVLLREFRAS-RNHLAIVI--------DEHGGISGLVTMEDVLEQIV-GDI 128 (129)
T ss_dssp CCCEEETTCBHHHHHHHHHTS-SCCEEEEE--------CC-CCEEEEEEHHHHHHHHH-HTC
T ss_pred CCeEeCCCCcHHHHHHHHHhc-CCeEEEEE--------eCCCCEEEEEEHHHHHHHHh-CCC
Confidence 578999999999999999995 88999998 88899999999999999999 676
No 8
>3hf7_A Uncharacterized CBS-domain protein; CSB-domain PAIR, AMP, PSI, MCSG, STR genomics, midwest center for structural genomics; HET: AMP; 2.75A {Klebsiella pneumoniae subsp}
Probab=99.84 E-value=9.8e-21 Score=160.96 Aligned_cols=128 Identities=22% Similarity=0.399 Sum_probs=106.6
Q ss_pred ccccccccccCCCEEEEeCCCChhHHHHHHHHHcCCcEEEEEeCCCCcEEEEEEhhhhcccCCcc-ccchhhhhhhhcCC
Q psy4847 42 RKIVGDVMTKLEDVYMLSYDAILDFETVSEIMKSGYSRIPVYEDRRTNIVTMFYIKDLALVDPDD-NTPLKTLCQFYQNS 120 (396)
Q Consensus 42 ~~tV~dIMtp~~dv~~l~~d~~l~~e~i~~i~~~g~sriPV~~~~~~~IVGiL~vkDLl~~~~~~-~~~l~~v~~~~~~~ 120 (396)
+.+|+++|+|+.+++++++++++. ++++.|.+++++++||++++.++++|+|+.+||+...... ......+.++| ++
T Consensus 1 ~~~v~~iM~~~~~~~~v~~~~~v~-~a~~~m~~~~~~~~pVv~~~~~~lvGivt~~dl~~~~~~~~~~~~~~v~~~m-~~ 78 (130)
T 3hf7_A 1 KVSVNDIMVPRNEIVGIDINDDWK-SIVRQLTHSPHGRIVLYRDSLDDAISMLRVREAYRLMTEKKEFTKEIMLRAA-DE 78 (130)
T ss_dssp CCBHHHHSEEGGGCCEEETTSCHH-HHHHHHHTCSSSEEEEESSSGGGEEEEEEHHHHHHHHTSSSCCCHHHHHHHS-BC
T ss_pred CcCHHHhCccHHHEEEEcCCCCHH-HHHHHHHHCCCCeEEEEcCCCCcEEEEEEHHHHHHHHhccCccchhhHHHhc-cC
Confidence 358999999988899999999999 9999999999999999976558999999999997643221 11122333444 67
Q ss_pred ceEEcCCCCHHHHHHHHHhcCCceEEEEEEeCCCCCCCCCCceeeeecHHHHHHHHHhccc
Q psy4847 121 CYFVFEDTTLDVLLKQFKEGIKGHMAFVHRVNNEGEGDPFYETVGLITLEDVIEELIQAEI 181 (396)
Q Consensus 121 v~~V~~dt~L~~~L~~f~~~~~~h~avV~~~~~~~~~De~g~~vGIVTleDIiEeli~~eI 181 (396)
+++|++++++.++++.|.++ +.+.++|+ |++|+++||||.+||+++|+ |+|
T Consensus 79 ~~~v~~~~~l~~~~~~m~~~-~~~~~~Vv--------d~~g~lvGiit~~Dil~~l~-g~i 129 (130)
T 3hf7_A 79 IYFVPEGTPLSTQLVKFQRN-KKKVGLVV--------DEYGDIQGLVTVEDILEEIV-GDF 129 (130)
T ss_dssp CCEEETTCBHHHHHHHHHHH-CCCEEEEE--------CTTSCEEEEEEHHHHHHHHH-C--
T ss_pred CeEeCCCCcHHHHHHHHHhc-CCeEEEEE--------cCCCCEEEEeeHHHHHHHHh-CCC
Confidence 88999999999999999995 78999998 88999999999999999999 776
No 9
>3k6e_A CBS domain protein; streptococcus pneumoniae TIGR4, structural genomics, PSI-2, protein structure initiative; 2.81A {Streptococcus pneumoniae}
Probab=99.84 E-value=4.4e-21 Score=169.28 Aligned_cols=130 Identities=17% Similarity=0.213 Sum_probs=108.5
Q ss_pred HHHHHHhc-ccccccccccccCCCEEEEeCCCChhHHHHHHHHHcCCcEEEEEeCCCCcEEEEEEhhhhcccCC----c-
Q psy4847 32 NIISGALE-LRRKIVGDVMTKLEDVYMLSYDAILDFETVSEIMKSGYSRIPVYEDRRTNIVTMFYIKDLALVDP----D- 105 (396)
Q Consensus 32 ~~i~~ale-l~~~tV~dIMtp~~dv~~l~~d~~l~~e~i~~i~~~g~sriPV~~~~~~~IVGiL~vkDLl~~~~----~- 105 (396)
.||...|+ |-.++++++|||+.++.+++.++++. +++..|.++|++++||++++ ++++|+|+.+|++.... .
T Consensus 3 ami~~~~e~~l~~~~~~iM~P~~~v~~v~~~~t~~-~a~~~m~~~~~s~~pVvd~~-~~lvGiit~~Di~~~~~~~~~~~ 80 (156)
T 3k6e_A 3 AMIAKEFETFLLGQEETFLTPAKNLAVLIDTHNAD-HATLLLSQMTYTRVPVVTDE-KQFVGTIGLRDIMAYQMEHDLSQ 80 (156)
T ss_dssp HHHHHHHHHHHHTTGGGGEEETTSSCCEETTSBHH-HHHHHHTTSSSSEEEEECC--CBEEEEEEHHHHHHHHHHHTCCH
T ss_pred chHHHHHHHHhhccHHHhCcchhHeEEECCcCCHH-HHHHHHHHcCCcEEEEEcCC-CcEEEEEEecchhhhhhhccccc
Confidence 35666664 66778999999999999999999999 99999999999999999765 89999999999964211 1
Q ss_pred ---cccchhhhhhhhcCCceEEcCCCCHHHHHHHHHhcCCceEEEEEEeCCCCCCCCCCceeeeecHHHHHHHHH
Q psy4847 106 ---DNTPLKTLCQFYQNSCYFVFEDTTLDVLLKQFKEGIKGHMAFVHRVNNEGEGDPFYETVGLITLEDVIEELI 177 (396)
Q Consensus 106 ---~~~~l~~v~~~~~~~v~~V~~dt~L~~~L~~f~~~~~~h~avV~~~~~~~~~De~g~~vGIVTleDIiEeli 177 (396)
...++.++| .+++++|++++++.++++.|.+. ++++|+ |++|+++||||.+||++++.
T Consensus 81 ~~~~~~~v~~im---~~~~~~v~~~~~l~~~~~~m~~~---~~lpVV--------d~~g~l~GiiT~~Dil~~~~ 141 (156)
T 3k6e_A 81 EIMADTDIVHMT---KTDVAVVSPDFTITEVLHKLVDE---SFLPVV--------DAEGIFQGIITRKSILKAVN 141 (156)
T ss_dssp HHHTTSBGGGTC---BCSCCCBCTTCCHHHHHHHTTTS---SEEEEE--------CTTSBEEEEEEHHHHHHHHH
T ss_pred ccccccCHHHhh---cCCceecccccHHHHHHHHHHHc---CCeEEE--------ecCCEEEEEEEHHHHHHHHH
Confidence 123555554 58899999999999999999873 346777 89999999999999999996
No 10
>3kxr_A Magnesium transporter, putative; cystathionine beta-synthase, Mg2+ transporter, structural GE PSI-2, protein structure initiative; 2.41A {Shewanella oneidensis mr-1}
Probab=99.82 E-value=1.7e-19 Score=166.28 Aligned_cols=138 Identities=13% Similarity=0.091 Sum_probs=122.7
Q ss_pred CCHHHHHHHHHHhcccccccccccccCCCEEEEeCCCChhHHHHHHHHHc---CCcEEEEEeCCCCcEEEEEEhhhhccc
Q psy4847 26 LEKDEVNIISGALELRRKIVGDVMTKLEDVYMLSYDAILDFETVSEIMKS---GYSRIPVYEDRRTNIVTMFYIKDLALV 102 (396)
Q Consensus 26 l~~~E~~~i~~alel~~~tV~dIMtp~~dv~~l~~d~~l~~e~i~~i~~~---g~sriPV~~~~~~~IVGiL~vkDLl~~ 102 (396)
++++|+.++.+++.|.+.+|+++|++. +++++.++++. ++++.|.+. ++..+||++++ ++++|+|+.+||+..
T Consensus 37 l~~~e~~~i~~~l~~~~~~v~~iM~~~--~~~v~~~~tv~-eal~~~~~~~~~~~~~~~Vvd~~-~~lvGivt~~dll~~ 112 (205)
T 3kxr_A 37 MGERQRQRFELYDQYSENEIGRYTDHQ--MLVLSDKATVA-QAQRFFRRIELDCNDNLFIVDEA-DKYLGTVRRYDIFKH 112 (205)
T ss_dssp SCHHHHHHHHHHHHSCTTCGGGGCBCC--CCEEETTCBHH-HHHHHHHHCCCTTCCEEEEECTT-CBEEEEEEHHHHTTS
T ss_pred CCHHHHHHHHHHhCCCcchHHhhccCc--eEEECCCCcHH-HHHHHHHhhCccCeeEEEEEcCC-CeEEEEEEHHHHHhC
Confidence 799999999999999999999999974 88999999999 999999987 78999999765 899999999999875
Q ss_pred CCccccchhhhhhhhcCCceEEcCCCCHHHHHHHHHhcCCceEEEEEEeCCCCCCCCCCceeeeecHHHHHHHHHhcccc
Q psy4847 103 DPDDNTPLKTLCQFYQNSCYFVFEDTTLDVLLKQFKEGIKGHMAFVHRVNNEGEGDPFYETVGLITLEDVIEELIQAEIM 182 (396)
Q Consensus 103 ~~~~~~~l~~v~~~~~~~v~~V~~dt~L~~~L~~f~~~~~~h~avV~~~~~~~~~De~g~~vGIVTleDIiEeli~~eI~ 182 (396)
.+ ..++.++| .+++++|++++++.++++.|.+. +.+.++|+ |++|+++||||.+||++.+. .+..
T Consensus 113 ~~--~~~v~~im---~~~~~~v~~~~~l~~a~~~m~~~-~~~~lpVV--------D~~g~lvGiIT~~Dil~~i~-~e~~ 177 (205)
T 3kxr_A 113 EP--HEPLISLL---SEDSRALTANTTLLDAAEAIEHS-REIELPVI--------DDAGELIGRVTLRAATALVR-EHYE 177 (205)
T ss_dssp CT--TSBGGGGC---CSSCCCEETTSCHHHHHHHHHTS-SCSEEEEE--------CTTSBEEEEEEHHHHHHHHH-HHHC
T ss_pred CC--cchHHHHh---cCCCeEECCCCCHHHHHHHHHhc-CCCEEEEE--------cCCCeEEEEEEHHHHHHHHH-HHHH
Confidence 44 34677776 47889999999999999999995 88999998 89999999999999999997 4443
No 11
>3nqr_A Magnesium and cobalt efflux protein CORC; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics; HET: AMP; 2.00A {Salmonella typhimurium}
Probab=99.81 E-value=9.3e-20 Score=153.69 Aligned_cols=122 Identities=29% Similarity=0.444 Sum_probs=105.5
Q ss_pred ccccccccccCCCEEEEeCCCChhHHHHHHHHHcCCcEEEEEeCCCCcEEEEEEhhhhcccC--CccccchhhhhhhhcC
Q psy4847 42 RKIVGDVMTKLEDVYMLSYDAILDFETVSEIMKSGYSRIPVYEDRRTNIVTMFYIKDLALVD--PDDNTPLKTLCQFYQN 119 (396)
Q Consensus 42 ~~tV~dIMtp~~dv~~l~~d~~l~~e~i~~i~~~g~sriPV~~~~~~~IVGiL~vkDLl~~~--~~~~~~l~~v~~~~~~ 119 (396)
+.+|+++|+|..+++++++++++. ++++.|.+++++++||++++.++++|+|+.+||+... .....++.++| +
T Consensus 2 ~~~v~diM~~~~~~~~v~~~~~~~-~a~~~m~~~~~~~~pVvd~~~~~~vGivt~~dl~~~~~~~~~~~~v~~~m----~ 76 (127)
T 3nqr_A 2 DQRVRDIMIPRSQMITLKRNQTLD-ECLDVIIESAHSRFPVISEDKDHIEGILMAKDLLPFMRSDAEAFSMDKVL----R 76 (127)
T ss_dssp -CBHHHHSEEGGGCCCEETTCCHH-HHHHHHHHHCCSEEEEESSSTTCEEEEEEGGGGGGGGSTTCCCCCHHHHC----B
T ss_pred CcCHHHhcccHHHeEEEcCCCCHH-HHHHHHHhCCCCEEEEEcCCCCcEEEEEEHHHHHHHHhccCCCCCHHHHc----C
Confidence 678999999987889999999999 9999999999999999976547999999999998642 22345677765 4
Q ss_pred CceEEcCCCCHHHHHHHHHhcCCceEEEEEEeCCCCCCCCCCceeeeecHHHHHHHHH
Q psy4847 120 SCYFVFEDTTLDVLLKQFKEGIKGHMAFVHRVNNEGEGDPFYETVGLITLEDVIEELI 177 (396)
Q Consensus 120 ~v~~V~~dt~L~~~L~~f~~~~~~h~avV~~~~~~~~~De~g~~vGIVTleDIiEeli 177 (396)
++.+|++++++.+++..|.+. +.+.++|+ |++|+++||||..||+++|+
T Consensus 77 ~~~~v~~~~~l~~a~~~m~~~-~~~~lpVv--------d~~g~~~Giit~~dll~~l~ 125 (127)
T 3nqr_A 77 TAVVVPESKRVDRMLKEFRSQ-RYHMAIVI--------DEFGGVSGLVTIEDILELIV 125 (127)
T ss_dssp CCCEEETTCBHHHHHHHHHHT-TCCEEEEE--------CTTSCEEEEEEHHHHHHHC-
T ss_pred CCeEECCCCcHHHHHHHHHhc-CCeEEEEE--------eCCCCEEEEEEHHHHHHHHh
Confidence 577999999999999999995 78888888 88999999999999999987
No 12
>3i8n_A Uncharacterized protein VP2912; APC64273.1, vibrio parahaemolyticus RIMD 2210633, structural genomics, PSI-2; 2.15A {Vibrio parahaemolyticus}
Probab=99.81 E-value=4.2e-20 Score=156.47 Aligned_cols=125 Identities=23% Similarity=0.350 Sum_probs=105.8
Q ss_pred cccccccccccccCCCEEEEeCCCChhHHHHHHHHHcCCcEEEEEeCCCCcEEEEEEhhhhcccC--Cccccchhhhhhh
Q psy4847 39 ELRRKIVGDVMTKLEDVYMLSYDAILDFETVSEIMKSGYSRIPVYEDRRTNIVTMFYIKDLALVD--PDDNTPLKTLCQF 116 (396)
Q Consensus 39 el~~~tV~dIMtp~~dv~~l~~d~~l~~e~i~~i~~~g~sriPV~~~~~~~IVGiL~vkDLl~~~--~~~~~~l~~v~~~ 116 (396)
+|.+.+|+++|+|+.+++++++++++. ++++.|.+++++++||++++.++++|+|+.+||+... .....++.++|
T Consensus 2 ~l~~~~v~~iM~~~~~v~~v~~~~~~~-~a~~~m~~~~~~~~pVvd~~~~~~~Givt~~dl~~~~~~~~~~~~v~~~m-- 78 (130)
T 3i8n_A 2 NAQDVPVTQVMTPRPVVFRVDATMTIN-EFLDKHKDTPFSRPLVYSEQKDNIIGFVHRLELFKMQQSGSGQKQLGAVM-- 78 (130)
T ss_dssp -----CCTTTSCCBCCCCEEETTSBHH-HHHHHTTTCSCSCCEEESSSTTCEEEECCHHHHHHHHHTTTTTSBHHHHS--
T ss_pred CcCcCCHhhCCCcHHHEEEEcCCCCHH-HHHHHHHhCCCCEEEEEeCCCCcEEEEEEHHHHHHHHhcCCCcCCHHHHh--
Confidence 478899999999988888999999999 9999999999999999986557999999999997542 22234666665
Q ss_pred hcCCceEEcCCCCHHHHHHHHHhcCCceEEEEEEeCCCCCCCCCCceeeeecHHHHHHHHH
Q psy4847 117 YQNSCYFVFEDTTLDVLLKQFKEGIKGHMAFVHRVNNEGEGDPFYETVGLITLEDVIEELI 177 (396)
Q Consensus 117 ~~~~v~~V~~dt~L~~~L~~f~~~~~~h~avV~~~~~~~~~De~g~~vGIVTleDIiEeli 177 (396)
+++.+|++++++.++++.|.+. +.+.++|+ |++|+++||||.+||+++|+
T Consensus 79 --~~~~~v~~~~~l~~~~~~m~~~-~~~~~~Vv--------d~~g~~vGivt~~dil~~l~ 128 (130)
T 3i8n_A 79 --RPIQVVLNNTALPKVFDQMMTH-RLQLALVV--------DEYGTVLGLVTLEDIFEHLV 128 (130)
T ss_dssp --EECCEEETTSCHHHHHHHHHHH-TCCEEEEE--------CTTSCEEEEEEHHHHHHHHH
T ss_pred --cCCcCcCCCCcHHHHHHHHHHc-CCeEEEEE--------cCCCCEEEEEEHHHHHHHHc
Confidence 4678999999999999999995 78889988 88999999999999999998
No 13
>2yvy_A MGTE, Mg2+ transporter MGTE; membrane protein, transport protein; 2.30A {Thermus thermophilus} PDB: 2yvz_A
Probab=99.77 E-value=1.7e-18 Score=166.13 Aligned_cols=157 Identities=17% Similarity=0.228 Sum_probs=131.0
Q ss_pred CCHHHHHHHHHcccccccccc---------CCCCHHHHHHHHHHhcccccccccccccCCCEEEEeCCCChhHHHHHHHH
Q psy4847 3 VHPQGLRSFIRVRDHDVTTEF---------NDLEKDEVNIISGALELRRKIVGDVMTKLEDVYMLSYDAILDFETVSEIM 73 (396)
Q Consensus 3 ~~~~Elk~ll~~~~~~~~~e~---------~~l~~~E~~~i~~alel~~~tV~dIMtp~~dv~~l~~d~~l~~e~i~~i~ 73 (396)
|++++++.+++.. .+. +.++..+...+.+++.+.+.+|+++|++ ++++++.++++. ++++.|.
T Consensus 91 l~~d~~~~ll~~l-----~~~~~~~~~~ll~~l~~~~~~~i~~~l~~~~~~v~~iM~~--~~~~v~~~~tv~-ea~~~~~ 162 (278)
T 2yvy_A 91 LSLDDLADALQAV-----RKEDPAYFQRLKDLLDPRTRAEVEALARYEEDEAGGLMTP--EYVAVREGMTVE-EVLRFLR 162 (278)
T ss_dssp SCHHHHHHHHHHH-----HHHCHHHHHHHHHHSCHHHHHHHHHHHHSCTTBGGGTCBS--CCCEECTTSBHH-HHHHHHH
T ss_pred CCHHHHHHHHHhC-----CCccHHHHHHHHHcCCHHHHHHHHHHHCCCcchHHhhcCC--CceEECCCCcHH-HHHHHHH
Confidence 5667777777764 233 5688999999999999999999999997 488999999999 9999999
Q ss_pred Hc-----CCcEEEEEeCCCCcEEEEEEhhhhcccCCccccchhhhhhhhcCCceEEcCCCCHHHHHHHHHhcCCceEEEE
Q psy4847 74 KS-----GYSRIPVYEDRRTNIVTMFYIKDLALVDPDDNTPLKTLCQFYQNSCYFVFEDTTLDVLLKQFKEGIKGHMAFV 148 (396)
Q Consensus 74 ~~-----g~sriPV~~~~~~~IVGiL~vkDLl~~~~~~~~~l~~v~~~~~~~v~~V~~dt~L~~~L~~f~~~~~~h~avV 148 (396)
++ +++++||++++ ++++|+|+.+||+...+ ..++.++| .+++++|++++++.++++.|++. +.+.++|
T Consensus 163 ~~~~~~~~~~~~~Vvd~~-~~lvGivt~~dll~~~~--~~~v~~im---~~~~~~v~~~~~l~~a~~~m~~~-~~~~lpV 235 (278)
T 2yvy_A 163 RAAPDAETIYYIYVVDEK-GRLKGVLSLRDLIVADP--RTRVAEIM---NPKVVYVRTDTDQEEVARLMADY-DFTVLPV 235 (278)
T ss_dssp HHTTTCSCSSEEEEECTT-CBEEEEEEHHHHHHSCT--TCBSTTTS---BSSCCCEETTSBHHHHHHHHHHH-TCSEEEE
T ss_pred HccCCccceeEEEEECCC-CCEEEEEEHHHHhcCCC--CCcHHHHh---CCCCeEEeCCCCHHHHHHHHHhc-CCCEEEE
Confidence 87 78999999865 89999999999987543 34677776 47889999999999999999995 7888899
Q ss_pred EEeCCCCCCCCCCceeeeecHHHHHHHHHhccccc
Q psy4847 149 HRVNNEGEGDPFYETVGLITLEDVIEELIQAEIMD 183 (396)
Q Consensus 149 ~~~~~~~~~De~g~~vGIVTleDIiEeli~~eI~D 183 (396)
+ |++|+++||||.+||++.+. +++.+
T Consensus 236 v--------d~~g~lvGivT~~Dil~~i~-~e~~e 261 (278)
T 2yvy_A 236 V--------DEEGRLVGIVTVDDVLDVLE-AEATE 261 (278)
T ss_dssp E--------CTTSBEEEEEEHHHHHHHC-------
T ss_pred E--------eCCCeEEEEEEHHHHHHHHH-HHhHH
Confidence 8 88999999999999999987 55543
No 14
>2zy9_A Mg2+ transporter MGTE; membrane protien, metal transport; 2.94A {Thermus thermophilus} PDB: 2yvx_A
Probab=99.74 E-value=1.1e-17 Score=172.70 Aligned_cols=156 Identities=17% Similarity=0.224 Sum_probs=136.6
Q ss_pred CCHHHHHHHHHcccccccccc---------CCCCHHHHHHHHHHhcccccccccccccCCCEEEEeCCCChhHHHHHHHH
Q psy4847 3 VHPQGLRSFIRVRDHDVTTEF---------NDLEKDEVNIISGALELRRKIVGDVMTKLEDVYMLSYDAILDFETVSEIM 73 (396)
Q Consensus 3 ~~~~Elk~ll~~~~~~~~~e~---------~~l~~~E~~~i~~alel~~~tV~dIMtp~~dv~~l~~d~~l~~e~i~~i~ 73 (396)
|++++++.++++. .+. +.++.+++.++.+++.+.+.+|+++|++ +++++++++++. ++++.|.
T Consensus 111 l~~dd~~~ll~~l-----~~~~~~~~~~ll~~l~~~~~~~i~~~l~~~~~~v~~iM~~--~~v~v~~~~tv~-ea~~~~~ 182 (473)
T 2zy9_A 111 LSLDDLADALQAV-----RKEDPAYFQRLKDLLDPRTRAEVEALARYEEDEAGGLMTP--EYVAVREGMTVE-EVLRFLR 182 (473)
T ss_dssp SCHHHHHHHHHHH-----HHSCHHHHHHHTTSSCHHHHHHHHHHHTSCTTBSTTTCBS--CEEEECTTCBHH-HHHHHHH
T ss_pred CCHHHHHHHHHhC-----CHhHHHHHHHHHhcCCHHHHHHHHHHhcCCCCCHHHhCCC--CceEeCCCCcHH-HHHHHHH
Confidence 6788888888875 344 7899999999999999999999999997 499999999999 9999998
Q ss_pred Hc-----CCcEEEEEeCCCCcEEEEEEhhhhcccCCccccchhhhhhhhcCCceEEcCCCCHHHHHHHHHhcCCceEEEE
Q psy4847 74 KS-----GYSRIPVYEDRRTNIVTMFYIKDLALVDPDDNTPLKTLCQFYQNSCYFVFEDTTLDVLLKQFKEGIKGHMAFV 148 (396)
Q Consensus 74 ~~-----g~sriPV~~~~~~~IVGiL~vkDLl~~~~~~~~~l~~v~~~~~~~v~~V~~dt~L~~~L~~f~~~~~~h~avV 148 (396)
++ +++++||++++ ++++|+|+.+||+...+ ..+++++| .+++++|++++++.++++.|++. +.+.++|
T Consensus 183 ~~~~~~~~~~~ipVvd~~-~~lvGiVt~~Dll~~~~--~~~v~dim---~~~~~~v~~~~~l~ea~~~m~~~-~~~~lpV 255 (473)
T 2zy9_A 183 RAAPDAETIYYIYVVDEK-GRLKGVLSLRDLIVADP--RTRVAEIM---NPKVVYVRTDTDQEEVARLMADY-DFTVLPV 255 (473)
T ss_dssp HHGGGCSEEEEEEEECTT-SBEEEEEEHHHHHHSCT--TSBGGGTS---BSSCCCEESSSBHHHHHHHHHHH-TCSEEEE
T ss_pred hccCCcCceeEEEEECCC-CcEEEEEEHHHHhcCCC--CCcHHHHh---CCCCeEEeCCCcHHHHHHHHHhc-CCcEEEE
Confidence 86 47999999865 89999999999987544 34777776 47889999999999999999995 8899999
Q ss_pred EEeCCCCCCCCCCceeeeecHHHHHHHHHhcccc
Q psy4847 149 HRVNNEGEGDPFYETVGLITLEDVIEELIQAEIM 182 (396)
Q Consensus 149 ~~~~~~~~~De~g~~vGIVTleDIiEeli~~eI~ 182 (396)
+ |++|+++|+||.+||++.+. ++..
T Consensus 256 V--------De~g~lvGiIT~~Dil~~i~-~e~~ 280 (473)
T 2zy9_A 256 V--------DEEGRLVGIVTVDDVLDVLE-AEAT 280 (473)
T ss_dssp E--------CTTSBEEEEEEHHHHHHHHH-HHHH
T ss_pred E--------cCCCEEEEEEehHhhHHHHH-HHhh
Confidence 9 99999999999999999987 4543
No 15
>4esy_A CBS domain containing membrane protein; structural genomics, PSI-biology; 2.01A {Sphaerobacter thermophilus}
Probab=99.73 E-value=8.1e-18 Score=149.07 Aligned_cols=130 Identities=16% Similarity=0.188 Sum_probs=107.4
Q ss_pred HHHHHHHHhcccccccccccccCCCEEEEeCCCChhHHHHHHHHHcCCcEEEEEeCCCCcEEEEEEhhhhcccCCcc---
Q psy4847 30 EVNIISGALELRRKIVGDVMTKLEDVYMLSYDAILDFETVSEIMKSGYSRIPVYEDRRTNIVTMFYIKDLALVDPDD--- 106 (396)
Q Consensus 30 E~~~i~~alel~~~tV~dIMtp~~dv~~l~~d~~l~~e~i~~i~~~g~sriPV~~~~~~~IVGiL~vkDLl~~~~~~--- 106 (396)
++..+.++ +++.+|+|||++. ++++++++++. ++++.|.+++++++||++++ |+++|+|+.+||+......
T Consensus 7 ~~~~~~~~--l~~~~V~diM~~~--v~~v~~~~tl~-~a~~~m~~~~~~~~pVvd~~-g~lvGiit~~Dll~~~~~~~~~ 80 (170)
T 4esy_A 7 RRRAIARA--IRQVPIRDILTSP--VVTVREDDTLD-AVAKTMLEHQIGCAPVVDQN-GHLVGIITESDFLRGSIPFWIY 80 (170)
T ss_dssp HHHHHHHH--HHTSBGGGGCCSC--CCCEETTSBHH-HHHHHHHHTTCSEEEEECTT-SCEEEEEEGGGGGGGTCCTTHH
T ss_pred HHHHHHHH--HcCCCHHHhcCCC--CcEECCcCcHH-HHHHHHHHcCCeEEEEEcCC-ccEEEEEEHHHHHHHHhhcccc
Confidence 34455555 5788999999964 89999999999 99999999999999999875 8999999999997532110
Q ss_pred -----------------------ccchhhhhhhhcCCceEEcCCCCHHHHHHHHHhcCCceEEEEEEeCCCCCCCCCCce
Q psy4847 107 -----------------------NTPLKTLCQFYQNSCYFVFEDTTLDVLLKQFKEGIKGHMAFVHRVNNEGEGDPFYET 163 (396)
Q Consensus 107 -----------------------~~~l~~v~~~~~~~v~~V~~dt~L~~~L~~f~~~~~~h~avV~~~~~~~~~De~g~~ 163 (396)
..++.++ |.+++++|.+++++.++++.|.+. +.|.++|+ | .|++
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i---m~~~~~tv~~~~~l~~a~~~m~~~-~~~~lpVv--------d-~g~l 147 (170)
T 4esy_A 81 EASEILSRAIPAPEVEHLFETGRKLTASAV---MTQPVVTAAPEDSVGSIADQMRRH-GIHRIPVV--------Q-DGVP 147 (170)
T ss_dssp HHHHHHTTTSCHHHHHHHHHHHTTCBHHHH---CBCCSCCBCTTSBHHHHHHHHHHT-TCSEEEEE--------E-TTEE
T ss_pred chhhhhhhccchhhHHhhhccccccchhhh---cccCcccCCcchhHHHHHHHHHHc-CCcEEEEE--------E-CCEE
Confidence 1234444 568999999999999999999995 78888887 6 4899
Q ss_pred eeeecHHHHHHHHHh
Q psy4847 164 VGLITLEDVIEELIQ 178 (396)
Q Consensus 164 vGIVTleDIiEeli~ 178 (396)
+||||..||++.|+.
T Consensus 148 vGivt~~Dil~~l~~ 162 (170)
T 4esy_A 148 VGIVTRRDLLKLLLL 162 (170)
T ss_dssp EEEEEHHHHTTTSCC
T ss_pred EEEEEHHHHHHHHHh
Confidence 999999999999874
No 16
>2oux_A Magnesium transporter; 10001B, structural genomics, PSI-2, P structure initiative, nysgxrc; 2.16A {Enterococcus faecalis} SCOP: a.118.26.1 d.37.1.1
Probab=99.72 E-value=7.6e-17 Score=155.72 Aligned_cols=157 Identities=13% Similarity=0.183 Sum_probs=129.2
Q ss_pred CCHHHHHHHHHccccccc-cccCCCCHHHHHHHHHHhcccccccccccccCCCEEEEeCCCChhHHHHHHHHHc-----C
Q psy4847 3 VHPQGLRSFIRVRDHDVT-TEFNDLEKDEVNIISGALELRRKIVGDVMTKLEDVYMLSYDAILDFETVSEIMKS-----G 76 (396)
Q Consensus 3 ~~~~Elk~ll~~~~~~~~-~e~~~l~~~E~~~i~~alel~~~tV~dIMtp~~dv~~l~~d~~l~~e~i~~i~~~-----g 76 (396)
|.+++...+++....... .-...|+.+++..+.+++.+.+.+|+++|++. +++++.++++. ++++.|.++ +
T Consensus 96 l~~d~~~~ll~~l~~~~~~~i~~~l~~~e~~~i~~ll~~~~~~v~~iM~~~--~~~v~~~~tv~-ea~~~~~~~~~~~~~ 172 (286)
T 2oux_A 96 MYTDNAVDLLNMLDKSQKAKYLSLLSSEEAGEIKELLHYEDETAGAIMTTE--FVSIVANQTVR-SAMYVLKNQADMAET 172 (286)
T ss_dssp SCHHHHHHHHHHSCHHHHHHHHHTSCHHHHHHHHHHTTSCTTBHHHHCBSC--CCEECSSSBHH-HHHHHHHHHCSSCSC
T ss_pred CCHHHHHHHHHhCCHHHHHHHHHcCCHHHHHHHHHHhcCChHHHHHhCCCC--ceEECCCCcHH-HHHHHHHHcccCccc
Confidence 445555555554321111 11245888899999999999999999999974 88999999999 999999987 8
Q ss_pred CcEEEEEeCCCCcEEEEEEhhhhcccCCccccchhhhhhhhcCCceEEcCCCCHHHHHHHHHhcCCceEEEEEEeCCCCC
Q psy4847 77 YSRIPVYEDRRTNIVTMFYIKDLALVDPDDNTPLKTLCQFYQNSCYFVFEDTTLDVLLKQFKEGIKGHMAFVHRVNNEGE 156 (396)
Q Consensus 77 ~sriPV~~~~~~~IVGiL~vkDLl~~~~~~~~~l~~v~~~~~~~v~~V~~dt~L~~~L~~f~~~~~~h~avV~~~~~~~~ 156 (396)
++++||++++ ++++|+|+.+||+...+ ..++.++| .+++++|++++++.+++..|.++ +.+.++|+
T Consensus 173 ~~~~pVvd~~-~~lvGivt~~dll~~~~--~~~v~~im---~~~~~~v~~~~~l~ea~~~m~~~-~~~~lpVV------- 238 (286)
T 2oux_A 173 IYYVYVVDQE-NHLVGVISLRDLIVNDD--DTLIADIL---NERVISVHVGDDQEDVAQTIRDY-DFLAVPVT------- 238 (286)
T ss_dssp CSEEEEECTT-CBEEEEEEHHHHTTSCT--TSBHHHHS---BSCCCCEETTSBHHHHHHHHHHH-TCSEEEEE-------
T ss_pred eeEEEEEcCC-CeEEEEEEHHHHHcCCC--CCcHHHHc---CCCCeeecCCCCHHHHHHHHHHc-CCcEEEEE-------
Confidence 8999999865 89999999999987644 34677776 47889999999999999999995 78888888
Q ss_pred CCCCCceeeeecHHHHHHHHH
Q psy4847 157 GDPFYETVGLITLEDVIEELI 177 (396)
Q Consensus 157 ~De~g~~vGIVTleDIiEeli 177 (396)
|++|+++||||..||++.+.
T Consensus 239 -d~~g~lvGiIT~~Dil~~i~ 258 (286)
T 2oux_A 239 -DYDDHLLGIVTVDDIIDVID 258 (286)
T ss_dssp -CTTCBEEEEEEHHHHHHHHH
T ss_pred -cCCCeEEEEEEHHHHHHHHH
Confidence 88899999999999999987
No 17
>4gqw_A CBS domain-containing protein CBSX1, chloroplasti; thioredoxin, plant, protein binding; 2.20A {Arabidopsis thaliana}
Probab=99.68 E-value=1.7e-16 Score=136.01 Aligned_cols=123 Identities=24% Similarity=0.264 Sum_probs=105.0
Q ss_pred cccccccccccCCCEEEEeCCCChhHHHHHHHHHcCCcEEEEEeCCCCcEEEEEEhhhhcccCC----------------
Q psy4847 41 RRKIVGDVMTKLEDVYMLSYDAILDFETVSEIMKSGYSRIPVYEDRRTNIVTMFYIKDLALVDP---------------- 104 (396)
Q Consensus 41 ~~~tV~dIMtp~~dv~~l~~d~~l~~e~i~~i~~~g~sriPV~~~~~~~IVGiL~vkDLl~~~~---------------- 104 (396)
...+|+++|++..++++++.++++. ++++.|.+++++++||++++ ++++|+|+.+||+....
T Consensus 3 ~~~~v~~im~~~~~~~~v~~~~~~~-~a~~~~~~~~~~~~~Vvd~~-~~~~G~vt~~dl~~~~~~~~~~~~~~~~~~~~~ 80 (152)
T 4gqw_A 3 GVYTVGEFMTKKEDLHVVKPTTTVD-EALELLVENRITGFPVIDED-WKLVGLVSDYDLLALDSGDSTWKTFNAVQKLLS 80 (152)
T ss_dssp CCSBGGGTSEESTTCCCBCTTSBHH-HHHHHHHHTTCSEEEEECTT-CBEEEEEEHHHHTTCC----CCHHHHHHHTC--
T ss_pred ceEEhhhccCCCCCCeEECCCCcHH-HHHHHHHHcCCceEEEEeCC-CeEEEEEEHHHHHHhhcccCcccchHHHHHHHH
Confidence 4578999999976789999999999 99999999999999999865 79999999999975321
Q ss_pred -ccccchhhhhhhhcCCceEEcCCCCHHHHHHHHHhcCCceEEEEEEeCCCCCCCCCCceeeeecHHHHHHHHH
Q psy4847 105 -DDNTPLKTLCQFYQNSCYFVFEDTTLDVLLKQFKEGIKGHMAFVHRVNNEGEGDPFYETVGLITLEDVIEELI 177 (396)
Q Consensus 105 -~~~~~l~~v~~~~~~~v~~V~~dt~L~~~L~~f~~~~~~h~avV~~~~~~~~~De~g~~vGIVTleDIiEeli 177 (396)
....++.++| .+++++|.+++++.+++..|.+. +.+.++|+ |+.|+++|+||..||++.+.
T Consensus 81 ~~~~~~v~~~m---~~~~~~v~~~~~l~~a~~~~~~~-~~~~l~Vv--------d~~g~~~Giit~~dil~~~~ 142 (152)
T 4gqw_A 81 KTNGKLVGDLM---TPAPLVVEEKTNLEDAAKILLET-KYRRLPVV--------DSDGKLVGIITRGNVVRAAL 142 (152)
T ss_dssp ---CCBHHHHS---EESCCCEESSSBHHHHHHHHHHS-SCCEEEEE--------CTTSBEEEEEEHHHHHHHHH
T ss_pred HhccccHHHhc---CCCceEECCCCcHHHHHHHHHHC-CCCEEEEE--------CCCCcEEEEEEHHHHHHHHH
Confidence 1123556655 46788999999999999999995 77788888 88899999999999999998
No 18
>2yzi_A Hypothetical protein PH0107; sheet/helix/sheet/sheet/helix, structural genomics, unknown function, NPPSFA; 2.25A {Pyrococcus horikoshii} SCOP: d.37.1.1
Probab=99.68 E-value=2.9e-16 Score=133.26 Aligned_cols=129 Identities=18% Similarity=0.192 Sum_probs=105.8
Q ss_pred hcccccccccccccCCCEEEEeCCCChhHHHHHHHHHcCCcEEEEEeCCCCcEEEEEEhhhhc-ccCCc---cccchhhh
Q psy4847 38 LELRRKIVGDVMTKLEDVYMLSYDAILDFETVSEIMKSGYSRIPVYEDRRTNIVTMFYIKDLA-LVDPD---DNTPLKTL 113 (396)
Q Consensus 38 lel~~~tV~dIMtp~~dv~~l~~d~~l~~e~i~~i~~~g~sriPV~~~~~~~IVGiL~vkDLl-~~~~~---~~~~l~~v 113 (396)
+.|...+|+++|++ ++.+++.++++. ++++.|.+++++.+||++++ ++++|+|+.+||+ ..... ...++.++
T Consensus 2 ~~l~~~~v~~im~~--~~~~v~~~~~~~-~a~~~~~~~~~~~~~Vvd~~-~~~~Givt~~dl~~~~~~~~~~~~~~v~~~ 77 (138)
T 2yzi_A 2 VMDMKAPIKVYMTK--KLLGVKPSTSVQ-EASRLMMEFDVGSLVVINDD-GNVVGFFTKSDIIRRVIVPGLPYDIPVERI 77 (138)
T ss_dssp -CCTTSBGGGTCBC--CCCEECTTSBHH-HHHHHHHHHTCSEEEEECTT-SCEEEEEEHHHHHHHTTTTCCCTTSBGGGT
T ss_pred cchhhhhHHHHhcC--CCeEECCCCcHH-HHHHHHHHcCCCEEEEEcCC-CcEEEEEeHHHHHHHHHhcCCcccCCHHHH
Confidence 45788999999985 488999999999 99999999999999999854 8999999999996 33221 23455655
Q ss_pred hhhhcCCceEEcCCCCHHHHHHHHHhcCCceEEEEEEeCCCCCCCCCCceeeeecHHHHHHHHHhcccccc
Q psy4847 114 CQFYQNSCYFVFEDTTLDVLLKQFKEGIKGHMAFVHRVNNEGEGDPFYETVGLITLEDVIEELIQAEIMDE 184 (396)
Q Consensus 114 ~~~~~~~v~~V~~dt~L~~~L~~f~~~~~~h~avV~~~~~~~~~De~g~~vGIVTleDIiEeli~~eI~DE 184 (396)
| .++++++.+++++.+++..|.+. +.+.+ |+ |+.|+++|+||..||++.+. .++..+
T Consensus 78 m---~~~~~~v~~~~~l~~~~~~m~~~-~~~~l-Vv--------d~~g~~~Giit~~dil~~~~-~~~~~~ 134 (138)
T 2yzi_A 78 M---TRNLITANVNTPLGEVLRKMAEH-RIKHI-LI--------EEEGKIVGIFTLSDLLEASR-RRLETA 134 (138)
T ss_dssp C---BCSCCEEETTSBHHHHHHHHHHH-TCSEE-EE--------EETTEEEEEEEHHHHHHHHH-CCSCCC
T ss_pred h---hCCCeEECCCCcHHHHHHHHHhc-CCCEE-EE--------CCCCCEEEEEEHHHHHHHHH-HHHHhh
Confidence 5 57889999999999999999986 66656 76 77799999999999999997 455443
No 19
>2emq_A Hypothetical conserved protein; CBS domains, NPPSFA, national project on protein structural functional analyses; 2.50A {Geobacillus kaustophilus}
Probab=99.67 E-value=2.8e-16 Score=136.25 Aligned_cols=131 Identities=15% Similarity=0.128 Sum_probs=103.9
Q ss_pred HHHhcccccccccccccCCCEEEEeCCCChhHHHHHHHHHcCCcEEEEEeCCCCcEEEEEEhhhhcccCCc---------
Q psy4847 35 SGALELRRKIVGDVMTKLEDVYMLSYDAILDFETVSEIMKSGYSRIPVYEDRRTNIVTMFYIKDLALVDPD--------- 105 (396)
Q Consensus 35 ~~alel~~~tV~dIMtp~~dv~~l~~d~~l~~e~i~~i~~~g~sriPV~~~~~~~IVGiL~vkDLl~~~~~--------- 105 (396)
.....+...+|+++|++..++++++.++++. ++++.|.+++++++||++++ ++++|+|+.+||+.....
T Consensus 3 ~~~~~l~~~~v~~im~~~~~~~~v~~~~~~~-~a~~~m~~~~~~~~pVvd~~-~~~~Givt~~dl~~~~~~~~~~~~~~~ 80 (157)
T 2emq_A 3 WEHNEFMQMTVKPFLIPADKVAHVQPGNYLD-HALLVLTKTGYSAIPVLDTS-YKLHGLISMTMMMDAILGLERIEFERL 80 (157)
T ss_dssp -------CCBSTTTCEEGGGSCCBCTTSBHH-HHHHHHHHSSSSEEEEECTT-CCEEEEEEHHHHHHHSBCSSSBCGGGG
T ss_pred hhHhhHhhCcHHhhccCCccceEECCCCcHH-HHHHHHHHCCceEEEEEcCC-CCEEEEeeHHHHHHHHhcccccchHHh
Confidence 3445578899999999855688999999999 99999999999999999865 789999999999754221
Q ss_pred cccchhhhhhhhcCCceEEcCCCCHHHHHHHHHhcCCceEEEEEEeCCCCCCCCCCceeeeecHHHHHHHHHhcccc
Q psy4847 106 DNTPLKTLCQFYQNSCYFVFEDTTLDVLLKQFKEGIKGHMAFVHRVNNEGEGDPFYETVGLITLEDVIEELIQAEIM 182 (396)
Q Consensus 106 ~~~~l~~v~~~~~~~v~~V~~dt~L~~~L~~f~~~~~~h~avV~~~~~~~~~De~g~~vGIVTleDIiEeli~~eI~ 182 (396)
...++.++| .+++++|++++++.+++..|.+. +. ++|+ |+.|+++|+||..||++.+. ....
T Consensus 81 ~~~~v~~~m---~~~~~~v~~~~~l~~a~~~m~~~-~~--l~Vv--------d~~g~~~Giit~~dil~~~~-~~~~ 142 (157)
T 2emq_A 81 ETMKVEEVM---NRNIPRLRLDDSLMKAVGLIVNH-PF--VCVE--------NDDGYFAGIFTRREVLKQLN-KQLH 142 (157)
T ss_dssp GTCBGGGTC---BCCCCEEETTSBHHHHHHHHHHS-SE--EEEE--------CSSSSEEEEEEHHHHHHHHH-HTTC
T ss_pred cCCcHHHHh---CCCCceecCCCcHHHHHHHHhhC-CE--EEEE--------cCCCeEEEEEEHHHHHHHHH-HHhh
Confidence 234555554 57889999999999999999984 44 6676 77899999999999999987 3443
No 20
>3lqn_A CBS domain protein; csgid, structural genomics, unknown function, center for structural genomics of infectious diseases; 1.80A {Bacillus anthracis} SCOP: d.37.1.0
Probab=99.67 E-value=1.7e-16 Score=136.77 Aligned_cols=123 Identities=15% Similarity=0.126 Sum_probs=104.2
Q ss_pred cccccccccccccCCCEEEEeCCCChhHHHHHHHHHcCCcEEEEEeCCCCcEEEEEEhhhhcccCC---------ccccc
Q psy4847 39 ELRRKIVGDVMTKLEDVYMLSYDAILDFETVSEIMKSGYSRIPVYEDRRTNIVTMFYIKDLALVDP---------DDNTP 109 (396)
Q Consensus 39 el~~~tV~dIMtp~~dv~~l~~d~~l~~e~i~~i~~~g~sriPV~~~~~~~IVGiL~vkDLl~~~~---------~~~~~ 109 (396)
.|...+|+++|+|..++.+++.++++. ++++.|.+++++++||++++ ++++|+|+.+||+.... ....+
T Consensus 11 ~l~~~~v~~im~~~~~~~~v~~~~~l~-~a~~~~~~~~~~~~pVvd~~-~~~~Givt~~dl~~~~~~~~~~~~~~~~~~~ 88 (150)
T 3lqn_A 11 EFQQIFVKDLMISSEKVAHVQIGNGLE-HALLVLVKSGYSAIPVLDPM-YKLHGLISTAMILDGILGLERIEFERLEEMK 88 (150)
T ss_dssp HHHHCBHHHHSEEGGGSCCBCTTSBHH-HHHHHHHHHTCSEEEEECTT-CBEEEEEEHHHHHHHTBCSSSBCGGGGGGCB
T ss_pred hhhcCChhhcccCCCceEEECCCCcHH-HHHHHHHHcCCcEEEEECCC-CCEEEEEEHHHHHHHHHhhcccchhHHhcCC
Confidence 467899999999877788999999999 99999999999999999765 89999999999974321 11234
Q ss_pred hhhhhhhhcCCceEEcCCCCHHHHHHHHHhcCCceEEEEEEeCCCCCCCCCCceeeeecHHHHHHHHH
Q psy4847 110 LKTLCQFYQNSCYFVFEDTTLDVLLKQFKEGIKGHMAFVHRVNNEGEGDPFYETVGLITLEDVIEELI 177 (396)
Q Consensus 110 l~~v~~~~~~~v~~V~~dt~L~~~L~~f~~~~~~h~avV~~~~~~~~~De~g~~vGIVTleDIiEeli 177 (396)
+.++| .+++++|.+++++.+++..|.+. +. ++|+ |+.|+++|+||..||++.+.
T Consensus 89 v~~~m---~~~~~~v~~~~~l~~a~~~~~~~-~~--l~Vv--------d~~g~~~Giit~~dil~~l~ 142 (150)
T 3lqn_A 89 VEQVM---KQDIPVLKLEDSFAKALEMTIDH-PF--ICAV--------NEDGYFEGILTRRAILKLLN 142 (150)
T ss_dssp GGGTC---BSSCCEEETTCBHHHHHHHHHHC-SE--EEEE--------CTTCBEEEEEEHHHHHHHHH
T ss_pred HHHHh---cCCCceeCCCCCHHHHHHHHHhC-CE--EEEE--------CCCCcEEEEEEHHHHHHHHH
Confidence 55554 57889999999999999999984 43 6676 88899999999999999987
No 21
>3ctu_A CBS domain protein; structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.81A {Streptococcus pneumoniae TIGR4} PDB: 3k6e_A
Probab=99.66 E-value=9.5e-17 Score=139.47 Aligned_cols=127 Identities=16% Similarity=0.174 Sum_probs=106.2
Q ss_pred HHHhcccccccccccccCCCEEEEeCCCChhHHHHHHHHHcCCcEEEEEeCCCCcEEEEEEhhhhcccCCc--------c
Q psy4847 35 SGALELRRKIVGDVMTKLEDVYMLSYDAILDFETVSEIMKSGYSRIPVYEDRRTNIVTMFYIKDLALVDPD--------D 106 (396)
Q Consensus 35 ~~alel~~~tV~dIMtp~~dv~~l~~d~~l~~e~i~~i~~~g~sriPV~~~~~~~IVGiL~vkDLl~~~~~--------~ 106 (396)
....++...+|+++|+|..++++++.++++. ++++.|.+++++++||++++ ++++|+|+.+||+..... .
T Consensus 7 ~~~~~l~~~~v~dim~p~~~~~~v~~~~~l~-~a~~~m~~~~~~~~~Vvd~~-~~~~Giit~~dl~~~~~~~~~~~~~~~ 84 (156)
T 3ctu_A 7 KEFETFLLGQEETFLTPAKNLAVLIDTHNAD-HATLLLSQMTYTRVPVVTDE-KQFVGTIGLRDIMAYQMEHDLSQEIMA 84 (156)
T ss_dssp HHHHHHHHTTGGGGEEEGGGCCCEETTSBHH-HHHHHHTTCSSSEEEEECC--CBEEEEEEHHHHHHHHHHHTCCHHHHT
T ss_pred HHHHHHHHHHHHHHcCcccCceEECCCCCHH-HHHHHHHHCCCceEeEECCC-CEEEEEEcHHHHHHHHHhccccccccc
Confidence 3444677889999999988899999999999 99999999999999999765 899999999999753211 1
Q ss_pred ccchhhhhhhhcCCceEEcCCCCHHHHHHHHHhcCCceEEEEEEeCCCCCCCCCCceeeeecHHHHHHHHH
Q psy4847 107 NTPLKTLCQFYQNSCYFVFEDTTLDVLLKQFKEGIKGHMAFVHRVNNEGEGDPFYETVGLITLEDVIEELI 177 (396)
Q Consensus 107 ~~~l~~v~~~~~~~v~~V~~dt~L~~~L~~f~~~~~~h~avV~~~~~~~~~De~g~~vGIVTleDIiEeli 177 (396)
..++.++| .+++++|.+++++.+++..|.+. + + ++|+ |+.|+++|+||..||++.+.
T Consensus 85 ~~~v~~~m---~~~~~~v~~~~~l~~a~~~~~~~-~-~-lpVv--------d~~g~~~Giit~~dil~~l~ 141 (156)
T 3ctu_A 85 DTDIVHMT---KTDVAVVSPDFTITEVLHKLVDE-S-F-LPVV--------DAEGIFQGIITRKSILKAVN 141 (156)
T ss_dssp TSBGGGGC---BCSCCCBCSSCCHHHHHHHTTTS-S-E-EEEE--------CTTSBEEEEEETTHHHHHHH
T ss_pred cCcHHHhc---cCCceeeCCCCcHHHHHHHHHHc-C-e-EEEE--------cCCCeEEEEEEHHHHHHHHH
Confidence 34566665 47889999999999999999984 4 4 6666 88899999999999999987
No 22
>2qrd_G Protein C1556.08C; AMPK, ADP, ATP-binding, kinase, nucleotide-binding, serine/T protein kinase, transferase, CBS domain; HET: ADP ATP; 2.41A {Schizosaccharomyces pombe} PDB: 2qrc_G* 2qr1_G* 2qre_G* 2oox_G* 2ooy_G*
Probab=99.66 E-value=1.9e-16 Score=153.96 Aligned_cols=143 Identities=11% Similarity=0.117 Sum_probs=118.8
Q ss_pred CCCHHHHHHHHHHhcc-cccccccccccCCCEEEEeCCCChhHHHHHHHHHcCCcEEEEEeCCCCcEEEEEEhhhhcccC
Q psy4847 25 DLEKDEVNIISGALEL-RRKIVGDVMTKLEDVYMLSYDAILDFETVSEIMKSGYSRIPVYEDRRTNIVTMFYIKDLALVD 103 (396)
Q Consensus 25 ~l~~~E~~~i~~alel-~~~tV~dIMtp~~dv~~l~~d~~l~~e~i~~i~~~g~sriPV~~~~~~~IVGiL~vkDLl~~~ 103 (396)
.++++|..++.++++| .+.+|+|+|+|+.++++++.++++. ++++.|.+++++++||++++.++++|+|+.+||+...
T Consensus 3 ~~~~~~~~~~~~~~~~l~~~~v~dim~~~~~vv~v~~~~tv~-~a~~~~~~~~~~~~pV~d~~~~~~vGiv~~~Dl~~~~ 81 (334)
T 2qrd_G 3 DVQETQKGALKEIQAFIRSRTSYDVLPTSFRLIVFDVTLFVK-TSLSLLTLNNIVSAPLWDSEANKFAGLLTMADFVNVI 81 (334)
T ss_dssp SHHHHHHHHHHHHHHHHHHSBGGGGSCSEEEEEEEETTSBHH-HHHHHHHHHTCSCEEEEETTTTEEEEEECHHHHHHHH
T ss_pred CCchHHHHHHHHHHHHHhcCchhhhCCCCCCEEEEcCCCCHH-HHHHHHHHcCCeEEEEEeCCCCeEEEEEEHHHHHHHH
Confidence 4667899999999994 5599999999999999999999999 9999999999999999988668999999999997421
Q ss_pred --------Ccc------ccchhhhhh----hhcCCc--eEEcCCCCHHHHHHHHHhcCCceEEEEEEeCCCCCCCCCCc-
Q psy4847 104 --------PDD------NTPLKTLCQ----FYQNSC--YFVFEDTTLDVLLKQFKEGIKGHMAFVHRVNNEGEGDPFYE- 162 (396)
Q Consensus 104 --------~~~------~~~l~~v~~----~~~~~v--~~V~~dt~L~~~L~~f~~~~~~h~avV~~~~~~~~~De~g~- 162 (396)
..+ ..++..+.+ +|.+++ .+|++++++.++++.|.+. +.+.++|+ |++|+
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~im~~~~~~~~v~~~~~~~~a~~~~~~~-~~~~~~Vv--------d~~~~~ 152 (334)
T 2qrd_G 82 KYYYQSSSFPEAIAEIDKFRLLGLREVERKIGAIPPETIYVHPMHSLMDACLAMSKS-RARRIPLI--------DVDGET 152 (334)
T ss_dssp HHHHHHCSCGGGGGGGGSCBHHHHHHHHHHHTCSCSSCCCBCTTSBHHHHHHHHHHS-CCSEEEEE--------EEETTT
T ss_pred HHHhhccCCccHHHHHhhhchhhHHHHHHhhccCCCceeeeCCCCcHHHHHHHHHHC-CceEEEEE--------eCCCCc
Confidence 111 334444432 234566 8999999999999999985 78888888 65554
Q ss_pred ----eeeeecHHHHHHHHH
Q psy4847 163 ----TVGLITLEDVIEELI 177 (396)
Q Consensus 163 ----~vGIVTleDIiEeli 177 (396)
++|+||.+||++.+.
T Consensus 153 ~~~~~~Givt~~dl~~~~~ 171 (334)
T 2qrd_G 153 GSEMIVSVLTQYRILKFIS 171 (334)
T ss_dssp TEEEEEEEEEHHHHHHHHH
T ss_pred CccceEEEeeHHHHHHHHH
Confidence 999999999999987
No 23
>2ef7_A Hypothetical protein ST2348; CBS-domain, structural genomics, NPPSFA, national project on structural and functional analyses; 2.10A {Sulfolobus tokodaii} SCOP: d.37.1.1
Probab=99.66 E-value=4.2e-16 Score=131.42 Aligned_cols=121 Identities=17% Similarity=0.179 Sum_probs=103.3
Q ss_pred ccccccccccccCCCEEEEeCCCChhHHHHHHHHHcCCcEEEEEeCCCCcEEEEEEhhhhccc--CC-ccccchhhhhhh
Q psy4847 40 LRRKIVGDVMTKLEDVYMLSYDAILDFETVSEIMKSGYSRIPVYEDRRTNIVTMFYIKDLALV--DP-DDNTPLKTLCQF 116 (396)
Q Consensus 40 l~~~tV~dIMtp~~dv~~l~~d~~l~~e~i~~i~~~g~sriPV~~~~~~~IVGiL~vkDLl~~--~~-~~~~~l~~v~~~ 116 (396)
|.+.+|+++|++. +.+++.++++. ++++.|.+++++++||++ + ++++|+|+.+||+.. .. ....++.++|
T Consensus 1 l~~~~v~~im~~~--~~~v~~~~~~~-~a~~~~~~~~~~~~~Vvd-~-~~~~Givt~~dl~~~~~~~~~~~~~v~~~~-- 73 (133)
T 2ef7_A 1 MEEEIVKEYMKTQ--VISVTKDAKLN-DIAKVMTEKNIGSVIVVD-G-NKPVGIITERDIVKAIGKGKSLETKAEEFM-- 73 (133)
T ss_dssp CCCCBGGGTSBCS--CCEEETTCBHH-HHHHHHHHHTCSEEEEEE-T-TEEEEEEEHHHHHHHHHTTCCTTCBGGGTS--
T ss_pred CCcccHHHhccCC--CEEECCCCcHH-HHHHHHHhcCCCEEEEEE-C-CEEEEEEcHHHHHHHHhcCCCcccCHHHHc--
Confidence 4678999999974 78899999999 999999999999999998 4 799999999999753 11 1234666665
Q ss_pred hcCCceEEcCCCCHHHHHHHHHhcCCceEEEEEEeCCCCCCCCCCceeeeecHHHHHHHHH
Q psy4847 117 YQNSCYFVFEDTTLDVLLKQFKEGIKGHMAFVHRVNNEGEGDPFYETVGLITLEDVIEELI 177 (396)
Q Consensus 117 ~~~~v~~V~~dt~L~~~L~~f~~~~~~h~avV~~~~~~~~~De~g~~vGIVTleDIiEeli 177 (396)
.+++.+|++++++.+++..|.+. +.+.++|+ |+.|+++|+||..||++.+.
T Consensus 74 -~~~~~~v~~~~~l~~~~~~~~~~-~~~~l~Vv--------d~~g~~~Giit~~dll~~~~ 124 (133)
T 2ef7_A 74 -TASLITIREDSPITGALALMRQF-NIRHLPVV--------DDKGNLKGIISIRDITRAID 124 (133)
T ss_dssp -EECCCCEETTSBHHHHHHHHHHH-TCSEEEEE--------CTTSCEEEEEEHHHHHHHHH
T ss_pred -CCCCEEECCCCCHHHHHHHHHHc-CCCEEEEE--------CCCCeEEEEEEHHHHHHHHH
Confidence 46889999999999999999996 67777787 87899999999999999986
No 24
>3kpb_A Uncharacterized protein MJ0100; CBS domain, S-adenosylmethionine, conformational change, unknown function; HET: SAM; 1.60A {Methanocaldococcus jannaschii} SCOP: d.37.1.0 PDB: 3kpd_A* 3kpc_A*
Probab=99.65 E-value=2.6e-16 Score=130.54 Aligned_cols=119 Identities=16% Similarity=0.240 Sum_probs=101.9
Q ss_pred cccccccccCCCEEEEeCCCChhHHHHHHHHHcCCcEEEEEeCCCCcEEEEEEhhhhcccCCccccchhhhhhhhcCCce
Q psy4847 43 KIVGDVMTKLEDVYMLSYDAILDFETVSEIMKSGYSRIPVYEDRRTNIVTMFYIKDLALVDPDDNTPLKTLCQFYQNSCY 122 (396)
Q Consensus 43 ~tV~dIMtp~~dv~~l~~d~~l~~e~i~~i~~~g~sriPV~~~~~~~IVGiL~vkDLl~~~~~~~~~l~~v~~~~~~~v~ 122 (396)
++|+++|++. +.+++.++++. ++++.|.+++++.+||++++ ++++|+|+.+||+........++.++| .+++.
T Consensus 1 ~~v~~im~~~--~~~v~~~~~~~-~a~~~~~~~~~~~~~Vvd~~-~~~~G~vt~~dl~~~~~~~~~~v~~~~---~~~~~ 73 (122)
T 3kpb_A 1 TLVKDILSKP--PITAHSNISIM-EAAKILIKHNINHLPIVDEH-GKLVGIITSWDIAKALAQNKKTIEEIM---TRNVI 73 (122)
T ss_dssp CBHHHHCCSC--CCCEETTSBHH-HHHHHHHHHTCSCEEEECTT-SBEEEEECHHHHHHHHHTTCCBGGGTS---BSSCC
T ss_pred CchHHhhCCC--CEEeCCCCcHH-HHHHHHHHcCCCeEEEECCC-CCEEEEEEHHHHHHHHHhcccCHHHHh---cCCCe
Confidence 4789999974 78999999999 99999999999999999865 899999999999864322233666665 47888
Q ss_pred EEcCCCCHHHHHHHHHhcCCceEEEEEEeCCCCCCCCCCceeeeecHHHHHHHHH
Q psy4847 123 FVFEDTTLDVLLKQFKEGIKGHMAFVHRVNNEGEGDPFYETVGLITLEDVIEELI 177 (396)
Q Consensus 123 ~V~~dt~L~~~L~~f~~~~~~h~avV~~~~~~~~~De~g~~vGIVTleDIiEeli 177 (396)
++++++++.+++..|.+. +.+.++|+ |++|+++|+||..||++.+.
T Consensus 74 ~v~~~~~l~~~~~~~~~~-~~~~l~Vv--------d~~g~~~Givt~~dl~~~l~ 119 (122)
T 3kpb_A 74 TAHEDEPVDHVAIKMSKY-NISGVPVV--------DDYRRVVGIVTSEDISRLFG 119 (122)
T ss_dssp CEETTSBHHHHHHHHHHH-TCSEEEEE--------CTTCBEEEEEEHHHHHHHHC
T ss_pred EECCCCCHHHHHHHHHHh-CCCeEEEE--------CCCCCEEEEEeHHHHHHHhh
Confidence 999999999999999985 67777787 88899999999999999986
No 25
>2p9m_A Hypothetical protein MJ0922; structural genomics, collaboratory for structural genomics, secsg; 2.59A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID}
Probab=99.65 E-value=7.6e-16 Score=130.44 Aligned_cols=122 Identities=22% Similarity=0.254 Sum_probs=103.0
Q ss_pred ccccccccccccCCCEEEEeCCCChhHHHHHHHHHcCCcEEEEEeCCCCcEEEEEEhhhh-cccCCc---cccchhhhhh
Q psy4847 40 LRRKIVGDVMTKLEDVYMLSYDAILDFETVSEIMKSGYSRIPVYEDRRTNIVTMFYIKDL-ALVDPD---DNTPLKTLCQ 115 (396)
Q Consensus 40 l~~~tV~dIMtp~~dv~~l~~d~~l~~e~i~~i~~~g~sriPV~~~~~~~IVGiL~vkDL-l~~~~~---~~~~l~~v~~ 115 (396)
|.+.+|+++|++. +.+++.++++. ++++.|.+++++++||++++ ++++|+|+.+|| +..... ...++.++|
T Consensus 5 l~~~~v~~im~~~--~~~v~~~~~~~-~a~~~~~~~~~~~~~Vvd~~-~~~~Givt~~dl~~~~~~~~~~~~~~v~~~m- 79 (138)
T 2p9m_A 5 LKNIKVKDVMTKN--VITAKRHEGVV-EAFEKMLKYKISSLPVIDDE-NKVIGIVTTTDIGYNLIRDKYTLETTIGDVM- 79 (138)
T ss_dssp CTTCBGGGTSBCS--CCCEETTSBHH-HHHHHHHHHTCCEEEEECTT-CBEEEEEEHHHHHHHHTTTCCCSSCBHHHHS-
T ss_pred cccCCHHHhhcCC--ceEECCCCcHH-HHHHHHHHCCCcEEEEECCC-CeEEEEEEHHHHHHHHHhhcccCCcCHHHHh-
Confidence 5688999999864 78899999999 99999999999999999765 799999999999 643221 234566665
Q ss_pred hhcCCceEEcCCCCHHHHHHHHHhcCC-----ceEEEEEEeCCCCCCCCCCceeeeecHHHHHHHHH
Q psy4847 116 FYQNSCYFVFEDTTLDVLLKQFKEGIK-----GHMAFVHRVNNEGEGDPFYETVGLITLEDVIEELI 177 (396)
Q Consensus 116 ~~~~~v~~V~~dt~L~~~L~~f~~~~~-----~h~avV~~~~~~~~~De~g~~vGIVTleDIiEeli 177 (396)
.+++.++++++++.+++..|.+. + .+.++|+ |+.|+++|+||..||++.+.
T Consensus 80 --~~~~~~v~~~~~l~~~~~~~~~~-~~~~~~~~~l~Vv--------d~~g~~~Giit~~dll~~~~ 135 (138)
T 2p9m_A 80 --TKDVITIHEDASILEAIKKMDIS-GKKEEIINQLPVV--------DKNNKLVGIISDGDIIRTIS 135 (138)
T ss_dssp --CSSCCCEETTSBHHHHHHHHTCC------CCCEEEEE--------CTTSBEEEEEEHHHHHHHHH
T ss_pred --CCCcEEECCCCCHHHHHHHHHhc-CCccccccEEEEE--------CCCCeEEEEEEHHHHHHHHH
Confidence 47889999999999999999985 6 7777787 87899999999999999886
No 26
>3sl7_A CBS domain-containing protein CBSX2; CBS-PAIR protein, redox regulator, plant CBS domain, thiored chloroplast, membrane protein; 1.91A {Arabidopsis thaliana}
Probab=99.65 E-value=4.2e-16 Score=137.70 Aligned_cols=122 Identities=20% Similarity=0.233 Sum_probs=104.1
Q ss_pred ccccccccccCCCEEEEeCCCChhHHHHHHHHHcCCcEEEEEeCCCCcEEEEEEhhhhcccC------------------
Q psy4847 42 RKIVGDVMTKLEDVYMLSYDAILDFETVSEIMKSGYSRIPVYEDRRTNIVTMFYIKDLALVD------------------ 103 (396)
Q Consensus 42 ~~tV~dIMtp~~dv~~l~~d~~l~~e~i~~i~~~g~sriPV~~~~~~~IVGiL~vkDLl~~~------------------ 103 (396)
..+|+++|++..++++++.++++. ++++.|.+++++++||++++ ++++|+|+.+||+...
T Consensus 3 ~~~v~dim~~~~~~~~v~~~~~l~-~a~~~m~~~~~~~~pVvd~~-~~~~Givt~~dl~~~~~~~~~~~~~~~~~~~~~~ 80 (180)
T 3sl7_A 3 GYTVGDFMTPRQNLHVVKPSTSVD-DALELLVEKKVTGLPVIDDN-WTLVGVVSDYDLLALDSISGRSQNDTNLFPDVDS 80 (180)
T ss_dssp CCBHHHHSEEGGGCCCBCTTSBHH-HHHHHHHHHTCSEEEEECTT-CBEEEEEEHHHHTCC-------------------
T ss_pred ceeHHHhcCCCCCceeeCCCCcHH-HHHHHHHHcCCCeEEEECCC-CeEEEEEEHHHHHhhhhhccccCCcccccccccc
Confidence 358999999976789999999999 99999999999999999865 7999999999997421
Q ss_pred -------------CccccchhhhhhhhcCCceEEcCCCCHHHHHHHHHhcCCceEEEEEEeCCCCCCCCCCceeeeecHH
Q psy4847 104 -------------PDDNTPLKTLCQFYQNSCYFVFEDTTLDVLLKQFKEGIKGHMAFVHRVNNEGEGDPFYETVGLITLE 170 (396)
Q Consensus 104 -------------~~~~~~l~~v~~~~~~~v~~V~~dt~L~~~L~~f~~~~~~h~avV~~~~~~~~~De~g~~vGIVTle 170 (396)
.....++.++| .+++++|.+++++.+++..|.+. +.+.++|+ |+.|+++||||..
T Consensus 81 ~~~~~~~~~~~~~~~~~~~v~~~m---~~~~~~v~~~~~l~~a~~~m~~~-~~~~lpVv--------d~~g~~vGiit~~ 148 (180)
T 3sl7_A 81 TWKTFNELQKLISKTYGKVVGDLM---TPSPLVVRDSTNLEDAARLLLET-KFRRLPVV--------DADGKLIGILTRG 148 (180)
T ss_dssp CCCSHHHHHHHHHTTTTCBHHHHS---EESCCCEETTSBHHHHHHHHTTS-TTCEEEEE--------CTTCBEEEEEEHH
T ss_pred hhhhhHHHHHHHhccccccHHHHh---CCCceEeCCCCcHHHHHHHHHHc-CCCEEEEE--------CCCCeEEEEEEHH
Confidence 01123555555 47788999999999999999995 78888888 8889999999999
Q ss_pred HHHHHHH
Q psy4847 171 DVIEELI 177 (396)
Q Consensus 171 DIiEeli 177 (396)
||++.+.
T Consensus 149 dil~~~~ 155 (180)
T 3sl7_A 149 NVVRAAL 155 (180)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 9999997
No 27
>1yav_A Hypothetical protein BSU14130; cystathionine beta synthase (CBS) domain, structural genomics, protein structure initiative, PSI; 2.10A {Bacillus subtilis} SCOP: d.37.1.1
Probab=99.64 E-value=5.9e-16 Score=135.02 Aligned_cols=128 Identities=16% Similarity=0.131 Sum_probs=105.0
Q ss_pred cccccccccccccCCCEEEEeCCCChhHHHHHHHHHcCCcEEEEEeCCCCcEEEEEEhhhhcccCC---------ccccc
Q psy4847 39 ELRRKIVGDVMTKLEDVYMLSYDAILDFETVSEIMKSGYSRIPVYEDRRTNIVTMFYIKDLALVDP---------DDNTP 109 (396)
Q Consensus 39 el~~~tV~dIMtp~~dv~~l~~d~~l~~e~i~~i~~~g~sriPV~~~~~~~IVGiL~vkDLl~~~~---------~~~~~ 109 (396)
.+...+|+++|+++.++++++.++++. ++++.|.+++++++||++++ ++++|+|+.+||+.... ....+
T Consensus 10 ~l~~~~v~~im~~~~~~~~v~~~~~l~-~a~~~m~~~~~~~~pVvd~~-~~lvGivt~~dl~~~~~~~~~~~~~~~~~~~ 87 (159)
T 1yav_A 10 QLLEATVGQFMIEADKVAHVQVGNNLE-HALLVLTKTGYTAIPVLDPS-YRLHGLIGTNMIMNSIFGLERIEFEKLDQIT 87 (159)
T ss_dssp -CTTCBHHHHSEEGGGSCCEETTCBHH-HHHHHHHHHCCSEEEEECTT-CBEEEEEEHHHHHHHHBCSSSBCGGGTTTSB
T ss_pred HHhHhhHHHHhCCccceEEECCCCcHH-HHHHHHHhCCCcEEEEECCC-CCEEEEeEHHHHHHHhhhhcccchhhhccCC
Confidence 577899999999865688999999999 99999999999999999865 79999999999975311 12345
Q ss_pred hhhhhhhhcCCceEEcCCCCHHHHHHHHHhcCCceEEEEEEeCCCCCCCCCCceeeeecHHHHHHHHHhccccc
Q psy4847 110 LKTLCQFYQNSCYFVFEDTTLDVLLKQFKEGIKGHMAFVHRVNNEGEGDPFYETVGLITLEDVIEELIQAEIMD 183 (396)
Q Consensus 110 l~~v~~~~~~~v~~V~~dt~L~~~L~~f~~~~~~h~avV~~~~~~~~~De~g~~vGIVTleDIiEeli~~eI~D 183 (396)
+.++| .+++++|.+++++.+++..|.+. +. ++|+ |+.|+++|+||..||++.+. .++..
T Consensus 88 v~~~m---~~~~~~v~~~~~l~~a~~~m~~~-~~--lpVv--------d~~g~~vGiit~~dil~~~~-~~~~~ 146 (159)
T 1yav_A 88 VEEVM---LTDIPRLHINDPIMKGFGMVINN-GF--VCVE--------NDEQVFEGIFTRRVVLKELN-KHIRS 146 (159)
T ss_dssp HHHHS---BCSCCEEETTSBHHHHHHHTTTC-SE--EEEE--------CTTCBEEEEEEHHHHHHHHH-HHC--
T ss_pred HHHhc---CCCCceEcCCCCHHHHHHHHHhC-CE--EEEE--------eCCCeEEEEEEHHHHHHHHH-HHHHh
Confidence 55555 57889999999999999999984 43 6677 77899999999999999987 45544
No 28
>3gby_A Uncharacterized protein CT1051; CBS domain, structural genomics, PSI-2, protein structure initiative; HET: EPE; 1.66A {Chlorobium tepidum tls}
Probab=99.63 E-value=7.9e-16 Score=129.46 Aligned_cols=120 Identities=11% Similarity=0.012 Sum_probs=103.1
Q ss_pred cccccccccccCCCEEEEeCCCChhHHHHHHHHHcCCcEEEEEeCCCCcEEEEEEhhhhcccCCccc---cchhhhhhhh
Q psy4847 41 RRKIVGDVMTKLEDVYMLSYDAILDFETVSEIMKSGYSRIPVYEDRRTNIVTMFYIKDLALVDPDDN---TPLKTLCQFY 117 (396)
Q Consensus 41 ~~~tV~dIMtp~~dv~~l~~d~~l~~e~i~~i~~~g~sriPV~~~~~~~IVGiL~vkDLl~~~~~~~---~~l~~v~~~~ 117 (396)
.+.+|+++|++. +.+++.++++. ++++.|.+++++.+||+++ ++++|+|+.+||+....... .++.++|
T Consensus 3 ~s~~v~~~m~~~--~~~v~~~~~~~-~a~~~~~~~~~~~~~Vvd~--~~~~Givt~~dl~~~~~~~~~~~~~v~~~m--- 74 (128)
T 3gby_A 3 ASVTFSYLAETD--YPVFTLGGSTA-DAARRLAASGCACAPVLDG--ERYLGMVHLSRLLEGRKGWPTVKEKLGEEL--- 74 (128)
T ss_dssp TTCBGGGGCBCC--SCCEETTSBHH-HHHHHHHHHTCSEEEEEET--TEEEEEEEHHHHHTTCSSSCCTTCBCCGGG---
T ss_pred cceEHHHhhcCC--cceECCCCCHH-HHHHHHHHCCCcEEEEEEC--CEEEEEEEHHHHHHHHhhCCcccCcHHHHc---
Confidence 468999999965 78899999999 9999999999999999987 89999999999986533221 3466665
Q ss_pred cCCceEEcCCCCHHHHHHHHHhcCCceEEEEEEeCCCCCCCCCCceeeeecHHHHHHHHH
Q psy4847 118 QNSCYFVFEDTTLDVLLKQFKEGIKGHMAFVHRVNNEGEGDPFYETVGLITLEDVIEELI 177 (396)
Q Consensus 118 ~~~v~~V~~dt~L~~~L~~f~~~~~~h~avV~~~~~~~~~De~g~~vGIVTleDIiEeli 177 (396)
.++++++.+++++.+++..|.+. +.+.++|+ |++|+++|+||..||++.+.
T Consensus 75 ~~~~~~v~~~~~l~~~~~~~~~~-~~~~lpVv--------d~~g~~~Giit~~dll~~l~ 125 (128)
T 3gby_A 75 LETVRSYRPGEQLFDNLISVAAA-KCSVVPLA--------DEDGRYEGVVSRKRILGFLA 125 (128)
T ss_dssp CBCCCCBCTTSBGGGSHHHHHHC-SSSEEEEE--------CTTCBEEEEEEHHHHHHHHH
T ss_pred cCCCcEECCCCCHHHHHHHHHhC-CCcEEEEE--------CCCCCEEEEEEHHHHHHHHH
Confidence 47888999999999999999995 77767777 88899999999999999985
No 29
>3fhm_A Uncharacterized protein ATU1752; CBS domain, prokaryotic, bound nucleotide, AMP, NADH, struct genomics, PSI-2; HET: AMP NAI; 2.70A {Agrobacterium tumefaciens str}
Probab=99.63 E-value=2.6e-16 Score=138.50 Aligned_cols=130 Identities=18% Similarity=0.231 Sum_probs=106.0
Q ss_pred cccccccccccccC-CCEEEEeCCCChhHHHHHHHHHcCCcEEEEEeCCCCcEEEEEEhhhhcccC-----Cccccchhh
Q psy4847 39 ELRRKIVGDVMTKL-EDVYMLSYDAILDFETVSEIMKSGYSRIPVYEDRRTNIVTMFYIKDLALVD-----PDDNTPLKT 112 (396)
Q Consensus 39 el~~~tV~dIMtp~-~dv~~l~~d~~l~~e~i~~i~~~g~sriPV~~~~~~~IVGiL~vkDLl~~~-----~~~~~~l~~ 112 (396)
.+...+|+|+|+|. .++.+++.++++. ++++.|.+++++.+||++++ ++++|+|+.+||+... .....++.+
T Consensus 20 ~l~~~~v~dim~~~~~~~~~v~~~~~l~-~a~~~~~~~~~~~~~Vvd~~-~~~~Givt~~dl~~~~~~~~~~~~~~~v~~ 97 (165)
T 3fhm_A 20 QGMATFVKDLLDRKGRDVVTVGPDVSIG-EAAGTLHAHKIGAVVVTDAD-GVVLGIFTERDLVKAVAGQGAASLQQSVSV 97 (165)
T ss_dssp SSSSCBHHHHHHHHCSCCCEECTTSBHH-HHHHHHHHHTCSEEEEECTT-SCEEEEEEHHHHHHHHHHHGGGGGTSBGGG
T ss_pred hhhhcCHHHHhccCCCCCeEECCCCCHH-HHHHHHHHcCCCEEEEEcCC-CeEEEEEEHHHHHHHHHhcCCccccCCHHH
Confidence 46789999999984 4688999999999 99999999999999999865 7999999999997531 112245666
Q ss_pred hhhhhcCCceEEcCCCCHHHHHHHHHhcCCceEEEEEEeCCCCCCCCCCceeeeecHHHHHHHHHhcccccc
Q psy4847 113 LCQFYQNSCYFVFEDTTLDVLLKQFKEGIKGHMAFVHRVNNEGEGDPFYETVGLITLEDVIEELIQAEIMDE 184 (396)
Q Consensus 113 v~~~~~~~v~~V~~dt~L~~~L~~f~~~~~~h~avV~~~~~~~~~De~g~~vGIVTleDIiEeli~~eI~DE 184 (396)
+| .+++++|.+++++.+++..|.+. +.+.++|+ |+ |+++|+||..||++.+. .+..++
T Consensus 98 ~m---~~~~~~v~~~~~l~~a~~~m~~~-~~~~lpVv--------d~-g~~~Giit~~dil~~~~-~~~~~~ 155 (165)
T 3fhm_A 98 AM---TKNVVRCQHNSTTDQLMEIMTGG-RFRHVPVE--------EN-GRLAGIISIGDVVKARI-GEIEAE 155 (165)
T ss_dssp TS---BSSCCCBCTTCBHHHHHHHHHHH-TCSEEEEE--------ET-TEEEEEEEHHHHHHHTT-CC----
T ss_pred Hh---cCCCeEECCCCcHHHHHHHHHHc-CCCEEEEE--------EC-CEEEEEEEHHHHHHHHH-HHHHHH
Confidence 65 47889999999999999999985 67777777 77 99999999999999997 455443
No 30
>3k2v_A Putative D-arabinose 5-phosphate isomerase; KPSF-like protein, CBS domain, structural genomics, PSI-2, P structure initiative; HET: MSE CMK; 1.95A {Klebsiella pneumoniae subsp} PDB: 3fna_A*
Probab=99.63 E-value=2.9e-16 Score=135.74 Aligned_cols=134 Identities=16% Similarity=0.222 Sum_probs=100.5
Q ss_pred CCHHHHHHHHHHhcccc---cccccccccCCCEEEEeCCCChhHHHHHHHHHcCCcEEEEEeCCCCcEEEEEEhhhhccc
Q psy4847 26 LEKDEVNIISGALELRR---KIVGDVMTKLEDVYMLSYDAILDFETVSEIMKSGYSRIPVYEDRRTNIVTMFYIKDLALV 102 (396)
Q Consensus 26 l~~~E~~~i~~alel~~---~tV~dIMtp~~dv~~l~~d~~l~~e~i~~i~~~g~sriPV~~~~~~~IVGiL~vkDLl~~ 102 (396)
+.+++.......-.+.. .+|+++|+++.++.++++++++. ++++.|.+++++.+||++++ ++++|+|+.+||+..
T Consensus 8 f~~~~~~~~~~~~~l~~~l~~~v~dim~~~~~~~~v~~~~~~~-~a~~~m~~~~~~~~~Vvd~~-~~~~Givt~~dl~~~ 85 (149)
T 3k2v_A 8 FTAEDFALSHPGGALGRKLLLRVNDIMHTGDEIPHVGLQATLR-DALLEITRKNLGMTAICDDD-MNIIGIFTDGDLRRV 85 (149)
T ss_dssp ------------CHHHHHTTSBGGGTSBCGGGSCEECTTCBHH-HHHHHHHHHTSSEEEEECTT-CBEEEEEEHHHHHHH
T ss_pred CCHHHhhhcCCCchhchhcccCHHHHhcCCCCCeEECCCCcHH-HHHHHHHhCCCcEEEEECCC-CcEEEEecHHHHHHH
Confidence 34444444444433333 48999999866689999999999 99999999999999999865 899999999999753
Q ss_pred CCc----cccchhhhhhhhcCCceEEcCCCCHHHHHHHHHhcCCceEEEEEEeCCCCCCCCCCceeeeecHHHHHH
Q psy4847 103 DPD----DNTPLKTLCQFYQNSCYFVFEDTTLDVLLKQFKEGIKGHMAFVHRVNNEGEGDPFYETVGLITLEDVIE 174 (396)
Q Consensus 103 ~~~----~~~~l~~v~~~~~~~v~~V~~dt~L~~~L~~f~~~~~~h~avV~~~~~~~~~De~g~~vGIVTleDIiE 174 (396)
... ...++.++| .+++.+|.+++++.+++..|.+. +.+.++|+ |+. +++|+||..||++
T Consensus 86 ~~~~~~~~~~~v~~~m---~~~~~~v~~~~~l~~a~~~m~~~-~~~~lpVv--------d~~-~~~Giit~~dil~ 148 (149)
T 3k2v_A 86 FDTGVDMRDASIADVM---TRGGIRIRPGTLAVDALNLMQSR-HITCVLVA--------DGD-HLLGVVHMHDLLR 148 (149)
T ss_dssp HCSSSCCTTCBHHHHS---EESCCEECTTCBHHHHHHHHHHH-TCSEEEEE--------ETT-EEEEEEEHHHHTC
T ss_pred HhcCCCcccCcHHHHc---CCCCeEECCCCCHHHHHHHHHHc-CCCEEEEe--------cCC-EEEEEEEHHHhhc
Confidence 211 234566665 47888999999999999999996 67777787 654 9999999999975
No 31
>2rih_A Conserved protein with 2 CBS domains; bateman domain, AMP binding protein, ligand-BIND protein; 2.10A {Pyrobaculum aerophilum} SCOP: d.37.1.1 PDB: 2rif_A
Probab=99.63 E-value=1.3e-15 Score=130.10 Aligned_cols=118 Identities=14% Similarity=0.163 Sum_probs=100.2
Q ss_pred cccccccccCCCEEEEeCCCChhHHHHHHHHHcCCcEEEEEeCCCC--cEEEEEEhhhhccc--CC-ccccchhhhhhhh
Q psy4847 43 KIVGDVMTKLEDVYMLSYDAILDFETVSEIMKSGYSRIPVYEDRRT--NIVTMFYIKDLALV--DP-DDNTPLKTLCQFY 117 (396)
Q Consensus 43 ~tV~dIMtp~~dv~~l~~d~~l~~e~i~~i~~~g~sriPV~~~~~~--~IVGiL~vkDLl~~--~~-~~~~~l~~v~~~~ 117 (396)
.+|+++|++ ++.+++.++++. ++++.|.+++++++||++++ + +++|+|+.+||+.. .. ....++.++|
T Consensus 5 ~~v~~im~~--~~~~v~~~~~~~-~a~~~~~~~~~~~~~Vvd~~-~~~~~~Givt~~dl~~~~~~~~~~~~~v~~~m--- 77 (141)
T 2rih_A 5 IRTSELLKR--PPVSLPETATIR-EVATELAKNRVGLAVLTARD-NPKRPVAVVSERDILRAVAQRLDLDGPAMPIA--- 77 (141)
T ss_dssp CBGGGGCCS--CCEEEETTCBHH-HHHHHHHHHTCSEEEEEETT-EEEEEEEEEEHHHHHHHHHTTCCTTSBSGGGC---
T ss_pred eEHHHHhcC--CCeEeCCCCcHH-HHHHHHHHcCCCEEEEEcCC-CcceeEEEEEHHHHHHHHhcCCCCCCCHHHHc---
Confidence 579999996 488999999999 99999999999999999875 5 89999999999753 11 1234566665
Q ss_pred cCCceEEcCCCCHHHHHHHHHhcCCceEEEEEEeCCCCCCCCCCceeeeecHHHHHHHHH
Q psy4847 118 QNSCYFVFEDTTLDVLLKQFKEGIKGHMAFVHRVNNEGEGDPFYETVGLITLEDVIEELI 177 (396)
Q Consensus 118 ~~~v~~V~~dt~L~~~L~~f~~~~~~h~avV~~~~~~~~~De~g~~vGIVTleDIiEeli 177 (396)
.+++++|.++ ++.++++.|.+. +.+.++|+ |+.|+++|+||..||++++.
T Consensus 78 ~~~~~~v~~~-~l~~a~~~m~~~-~~~~l~Vv--------d~~g~~~Giit~~dll~~~~ 127 (141)
T 2rih_A 78 NSPITVLDTD-PVHVAAEKMRRH-NIRHVVVV--------NKNGELVGVLSIRDLCFERA 127 (141)
T ss_dssp BCCCEEETTS-BHHHHHHHHHHH-TCSEEEEE--------CTTSCEEEEEEHHHHHSCHH
T ss_pred CCCCeEEcCC-CHHHHHHHHHHc-CCeEEEEE--------cCCCcEEEEEEHHHHHHHHH
Confidence 5789999999 999999999995 67777887 88899999999999998776
No 32
>2v8q_E 5'-AMP-activated protein kinase subunit gamma-1; phosphorylation, nucleotide-binding, serine/threonine-protei kinase, magnesium, CBS domain; HET: AMP; 2.10A {Rattus norvegicus} SCOP: d.37.1.1 d.37.1.1 PDB: 2v92_E* 2v9j_E* 2y8l_E* 2y8q_E* 2y94_E* 2ya3_E*
Probab=99.63 E-value=7.9e-16 Score=149.52 Aligned_cols=146 Identities=12% Similarity=0.167 Sum_probs=114.3
Q ss_pred ccccCCCCHHHHHHHHHHhcccccccccccccCCCEEEEeCCCChhHHHHHHHHHcCCcEEEEEeCCCCcEEEEEEhhhh
Q psy4847 20 TTEFNDLEKDEVNIISGALELRRKIVGDVMTKLEDVYMLSYDAILDFETVSEIMKSGYSRIPVYEDRRTNIVTMFYIKDL 99 (396)
Q Consensus 20 ~~e~~~l~~~E~~~i~~alel~~~tV~dIMtp~~dv~~l~~d~~l~~e~i~~i~~~g~sriPV~~~~~~~IVGiL~vkDL 99 (396)
+.+.+.+.+.+.+.+... |.+.+|+|+|+|+.++++++.++++. ++++.|.+++++++||++++.++++|+|+.+||
T Consensus 14 ~~~~~~~~~~~~~~~~~~--l~~~~v~dim~p~~~v~~v~~~~~v~-~a~~~~~~~~~~~~pV~d~~~~~~vGivt~~Dl 90 (330)
T 2v8q_E 14 NEHSQETPESNSSVYTTF--MKSHRCYDLIPTSSKLVVFDTSLQVK-KAFFALVTNGVRAAPLWDSKKQSFVGMLTITDF 90 (330)
T ss_dssp ---------CCSCHHHHH--HHHSBGGGGSCSEEEEEEEETTSBHH-HHHHHHHHHTCSEEEEEETTTTEEEEEEEHHHH
T ss_pred ChHhhhccchhhHHHHHH--HHcCcHhhhccCCCcEEEEeCCCcHH-HHHHHHHHcCCcEEEEEeCCCCeEEEEEEHHHH
Confidence 356667777777778887 67889999999999999999999999 999999999999999998876799999999999
Q ss_pred cccC------Cc------cccchhhhh----hhhcCCceEEcCCCCHHHHHHHHHhcCCceEEEEEEeCCCCCCCC-CCc
Q psy4847 100 ALVD------PD------DNTPLKTLC----QFYQNSCYFVFEDTTLDVLLKQFKEGIKGHMAFVHRVNNEGEGDP-FYE 162 (396)
Q Consensus 100 l~~~------~~------~~~~l~~v~----~~~~~~v~~V~~dt~L~~~L~~f~~~~~~h~avV~~~~~~~~~De-~g~ 162 (396)
+... +. ....+..+. ++|.+++.+|++++++.++++.|.+. +.+.++|+ |+ +|+
T Consensus 91 l~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~im~~~~~~v~~~~~~~~a~~~~~~~-~~~~~~Vv--------d~~~~~ 161 (330)
T 2v8q_E 91 INILHRYYKSALVQIYELEEHKIETWREVYLQDSFKPLVCISPNASLFDAVSSLIRN-KIHRLPVI--------DPESGN 161 (330)
T ss_dssp HHHHHHHHHHHTTTCCCGGGCBHHHHHHHHSSSSCCCCCCBCTTSBHHHHHHHHHHH-TCSCEEEE--------CTTTCC
T ss_pred HHHHHHHHhccccchhHHhhccHHHHHHHHhhcccCCceEeCCCCCHHHHHHHHHHC-CCCeEEEE--------eCCCCc
Confidence 7421 00 112233222 33467899999999999999999985 67888888 77 899
Q ss_pred eeeeecHHHHHHHHH
Q psy4847 163 TVGLITLEDVIEELI 177 (396)
Q Consensus 163 ~vGIVTleDIiEeli 177 (396)
++|+||.+||++.+.
T Consensus 162 ~~Givt~~dl~~~~~ 176 (330)
T 2v8q_E 162 TLYILTHKRILKFLK 176 (330)
T ss_dssp EEEEECHHHHHHHHH
T ss_pred EEEEEcHHHHHHHHH
Confidence 999999999999886
No 33
>2rc3_A CBS domain; in SITU proteolysis, BR, structural genomics, PSI-2, protein structure initiative; HET: NAD; 1.60A {Nitrosomonas europaea atcc 19718} SCOP: d.37.1.1
Probab=99.61 E-value=1.8e-15 Score=128.09 Aligned_cols=118 Identities=14% Similarity=0.188 Sum_probs=100.2
Q ss_pred ccccccccC-CCEEEEeCCCChhHHHHHHHHHcCCcEEEEEeCCCCcEEEEEEhhhhcc-cCC----ccccchhhhhhhh
Q psy4847 44 IVGDVMTKL-EDVYMLSYDAILDFETVSEIMKSGYSRIPVYEDRRTNIVTMFYIKDLAL-VDP----DDNTPLKTLCQFY 117 (396)
Q Consensus 44 tV~dIMtp~-~dv~~l~~d~~l~~e~i~~i~~~g~sriPV~~~~~~~IVGiL~vkDLl~-~~~----~~~~~l~~v~~~~ 117 (396)
+|+++|+|+ .++.+++.++++. ++++.|.+++++++||++ + ++++|+|+.+||+. +.. ....++.++|
T Consensus 7 ~v~~im~~~~~~~~~v~~~~~~~-~a~~~~~~~~~~~~~Vvd-~-~~~~Givt~~dl~~~~~~~~~~~~~~~v~~~m--- 80 (135)
T 2rc3_A 7 TVKHLLQEKGHTVVAIGPDDSVF-NAMQKMAADNIGALLVMK-D-EKLVGILTERDFSRKSYLLDKPVKDTQVKEIM--- 80 (135)
T ss_dssp BHHHHHHHHCCCCCEECTTSBHH-HHHHHHHHHTCSEEEEEE-T-TEEEEEEEHHHHHHHGGGSSSCGGGSBGGGTS---
T ss_pred eHHHHHhcCCCCcEEECCCCcHH-HHHHHHHhcCCCEEEEEE-C-CEEEEEEehHHHHHHHHHcCCCcccCCHHHhc---
Confidence 899999965 5688999999999 999999999999999997 4 79999999999973 221 1234555555
Q ss_pred cCCceEEcCCCCHHHHHHHHHhcCCceEEEEEEeCCCCCCCCCCceeeeecHHHHHHHHH
Q psy4847 118 QNSCYFVFEDTTLDVLLKQFKEGIKGHMAFVHRVNNEGEGDPFYETVGLITLEDVIEELI 177 (396)
Q Consensus 118 ~~~v~~V~~dt~L~~~L~~f~~~~~~h~avV~~~~~~~~~De~g~~vGIVTleDIiEeli 177 (396)
.+++.+|.+++++.++++.|.+. +.+.++|+ | .|+++|+||..||++.+.
T Consensus 81 ~~~~~~v~~~~~l~~~~~~m~~~-~~~~lpVv--------d-~g~~~Giit~~dll~~~~ 130 (135)
T 2rc3_A 81 TRQVAYVDLNNTNEDCMALITEM-RVRHLPVL--------D-DGKVIGLLSIGDLVKDAI 130 (135)
T ss_dssp BCSCCCBCTTCBHHHHHHHHHHH-TCSEEEEE--------E-TTEEEEEEEHHHHHHHHH
T ss_pred cCCCeEECCCCcHHHHHHHHHHh-CCCEEEEE--------e-CCEEEEEEEHHHHHHHHH
Confidence 57889999999999999999995 67777787 6 589999999999999987
No 34
>3t4n_C Nuclear protein SNF4; CBS domain, nucleotide binding, cytosol, protein binding; HET: ADP; 2.30A {Saccharomyces cerevisiae} PDB: 3tdh_C* 3te5_C* 2qlv_C
Probab=99.61 E-value=6.2e-16 Score=149.63 Aligned_cols=148 Identities=13% Similarity=0.159 Sum_probs=120.5
Q ss_pred ccccCCCCHHHHHHHHHHhcc-cccccccccccCCCEEEEeCCCChhHHHHHHHHHcCCcEEEEEeCCCCcEEEEEEhhh
Q psy4847 20 TTEFNDLEKDEVNIISGALEL-RRKIVGDVMTKLEDVYMLSYDAILDFETVSEIMKSGYSRIPVYEDRRTNIVTMFYIKD 98 (396)
Q Consensus 20 ~~e~~~l~~~E~~~i~~alel-~~~tV~dIMtp~~dv~~l~~d~~l~~e~i~~i~~~g~sriPV~~~~~~~IVGiL~vkD 98 (396)
..+.+.++++|..++.++++| .+.+|+|+|+|+.++++++.+.++. ++++.|.+++++++||++++.++++|+|+.+|
T Consensus 6 ~~~~~~~~~~~~~~~~~i~~~l~~~~~~d~m~~~~~~v~v~~~~sv~-~a~~~m~~~~~~~~pV~d~~~~~lvGilt~~D 84 (323)
T 3t4n_C 6 QDSQEKVSIEQQLAVESIRKFLNSKTSYDVLPVSYRLIVLDTSLLVK-KSLNVLLQNSIVSAPLWDSKTSRFAGLLTTTD 84 (323)
T ss_dssp --CHHHHHHHHHHHHHHHHHHHHHSBHHHHSCSEEEEEEEETTSBHH-HHHHHHHHTTCSCEEEEETTTTEEEEEECHHH
T ss_pred CCCCCcccHHHHHHHHHHHHHHHhCchHhhCCCCCcEEEEcCCCcHH-HHHHHHHHcCCceEEEEeCCCCeEEEEEEHHH
Confidence 356678899999999999998 9999999999999999999999999 99999999999999999987679999999999
Q ss_pred hcccC------Cc-----cc---cchhhhh---hhhcCCceEEcCCCCHHHHHHHHHhcCCceEEEEEEeCCCCCCCCCC
Q psy4847 99 LALVD------PD-----DN---TPLKTLC---QFYQNSCYFVFEDTTLDVLLKQFKEGIKGHMAFVHRVNNEGEGDPFY 161 (396)
Q Consensus 99 Ll~~~------~~-----~~---~~l~~v~---~~~~~~v~~V~~dt~L~~~L~~f~~~~~~h~avV~~~~~~~~~De~g 161 (396)
++... +. +. ..+++++ .++.+++.++++++++.+++..|.+. +.+.++|+ |+++
T Consensus 85 l~~~l~~~~~~~~~~~~l~~~~~~~v~~i~~~~~~~~~~~v~v~~~~~l~~a~~~m~~~-~~~~lpVv--------d~~~ 155 (323)
T 3t4n_C 85 FINVIQYYFSNPDKFELVDKLQLDGLKDIERALGVDQLDTASIHPSRPLFEACLKMLES-RSGRIPLI--------DQDE 155 (323)
T ss_dssp HHHHHHHHHHCGGGGGGGGGCBHHHHHHHHHHTTC----CCCBCTTSBHHHHHHHHHHH-TCSEEEEE--------EECT
T ss_pred HHHHHHHHHcCcchhHHHHHHHHHHHHHHHHHhCCCCCCceEeCCCCcHHHHHHHHHhC-CeeEEEEE--------ecCC
Confidence 97421 11 00 1223332 22357788999999999999999985 77888888 5555
Q ss_pred c-----eeeeecHHHHHHHHH
Q psy4847 162 E-----TVGLITLEDVIEELI 177 (396)
Q Consensus 162 ~-----~vGIVTleDIiEeli 177 (396)
. ++|+||..||++.+.
T Consensus 156 ~~~~~~l~Givt~~di~~~l~ 176 (323)
T 3t4n_C 156 ETHREIVVSVLTQYRILKFVA 176 (323)
T ss_dssp TTCCEEEEEEEEHHHHHHHHH
T ss_pred CCCccceEEEecHHHHHHHHH
Confidence 4 999999999999987
No 35
>1pvm_A Conserved hypothetical protein TA0289; structural genomics, CBS domain, PSI, protein structure initiative; 1.50A {Thermoplasma acidophilum dsm 1728} SCOP: d.37.1.1 g.41.13.1 PDB: 2qh1_A
Probab=99.59 E-value=1.9e-15 Score=135.41 Aligned_cols=124 Identities=18% Similarity=0.176 Sum_probs=104.5
Q ss_pred cccccccccCCCEEEEeCCCChhHHHHHHHHHcCCcEEEEEeCCCCcEEEEEEhhhhcccCC-----ccccchhhhhhhh
Q psy4847 43 KIVGDVMTKLEDVYMLSYDAILDFETVSEIMKSGYSRIPVYEDRRTNIVTMFYIKDLALVDP-----DDNTPLKTLCQFY 117 (396)
Q Consensus 43 ~tV~dIMtp~~dv~~l~~d~~l~~e~i~~i~~~g~sriPV~~~~~~~IVGiL~vkDLl~~~~-----~~~~~l~~v~~~~ 117 (396)
.+|+++|++ ++++++.++++. ++++.|.+++++++||++++ ++++|+|+.+||+.... ....++.++|
T Consensus 9 ~~v~~im~~--~~~~v~~~~~l~-ea~~~~~~~~~~~~pVvd~~-g~~vGivt~~dl~~~~~~~~~~~~~~~v~~im--- 81 (184)
T 1pvm_A 9 MRVEKIMNS--NFKTVNWNTTVF-DAVKIMNENHLYGLVVKDDN-GNDVGLLSERSIIKRFIPRNKKPDEVPIRLVM--- 81 (184)
T ss_dssp CBGGGTSBT--TCCEEETTCBHH-HHHHHHHHHTCCEEEEECTT-SCEEEEEEHHHHHHHTGGGCCCGGGSBGGGTS---
T ss_pred cCHHHhcCC--CCeEECCCCcHH-HHHHHHHHcCCCEEEEEcCC-CcEEEEEeHHHHHHHHhhcccCcccCCHHHHh---
Confidence 689999985 488999999999 99999999999999999765 79999999999975322 1234556555
Q ss_pred cCCceEEcCCCCHHHHHHHHHhcCCceEEEEEEeCCCCCCCCCCceeeeecHHHHHHHHHhc-cccc
Q psy4847 118 QNSCYFVFEDTTLDVLLKQFKEGIKGHMAFVHRVNNEGEGDPFYETVGLITLEDVIEELIQA-EIMD 183 (396)
Q Consensus 118 ~~~v~~V~~dt~L~~~L~~f~~~~~~h~avV~~~~~~~~~De~g~~vGIVTleDIiEeli~~-eI~D 183 (396)
.+++++|++++++.++++.|.+. +.+.++|+ |++|+++|+||..||++.+. + ++.+
T Consensus 82 ~~~~~~v~~~~~l~~a~~~m~~~-~~~~lpVv--------d~~g~~~Givt~~dll~~~~-~~~~~~ 138 (184)
T 1pvm_A 82 RKPIPKVKSDYDVKDVAAYLSEN-GLERCAVV--------DDPGRVVGIVTLTDLSRYLS-RASITD 138 (184)
T ss_dssp BSSCCEEETTCBHHHHHHHHHHH-TCSEEEEE--------CTTCCEEEEEEHHHHTTTSC-HHHHHH
T ss_pred CCCCcEECCCCCHHHHHHHHHHc-CCcEEEEE--------cCCCeEEEEEEHHHHHHHHH-hhhHHH
Confidence 47889999999999999999995 77888888 88899999999999999876 4 5544
No 36
>4fry_A Putative signal-transduction protein with CBS DOM; CBS domain,ssgcid, structural genomics, niaid; HET: NAD AMP; 2.10A {Burkholderia ambifaria}
Probab=99.59 E-value=3.7e-15 Score=129.48 Aligned_cols=125 Identities=15% Similarity=0.228 Sum_probs=104.0
Q ss_pred cccccccccC----CCEEEEeCCCChhHHHHHHHHHcCCcEEEEEeCCCCcEEEEEEhhhhcccCC-----ccccchhhh
Q psy4847 43 KIVGDVMTKL----EDVYMLSYDAILDFETVSEIMKSGYSRIPVYEDRRTNIVTMFYIKDLALVDP-----DDNTPLKTL 113 (396)
Q Consensus 43 ~tV~dIMtp~----~dv~~l~~d~~l~~e~i~~i~~~g~sriPV~~~~~~~IVGiL~vkDLl~~~~-----~~~~~l~~v 113 (396)
++|+|+|++. .++.+++.++++. ++++.|.+++++++||.+ .++++|+|+.+||+.... ....++.++
T Consensus 7 ~~v~dim~~~~~~~~~~~~v~~~~~~~-~a~~~~~~~~~~~~~V~~--~~~~~Givt~~dl~~~~~~~~~~~~~~~v~~~ 83 (157)
T 4fry_A 7 TTVAQILKAKPDSGRTIYTVTKNDFVY-DAIKLMAEKGIGALLVVD--GDDIAGIVTERDYARKVVLQERSSKATRVEEI 83 (157)
T ss_dssp CBHHHHHHHSTTTTCCCCEEETTSBHH-HHHHHHHHHTCSEEEEES--SSSEEEEEEHHHHHHHSGGGTCCSSSCBHHHH
T ss_pred HHHHHHHhcccccCCCCeEECCCCcHH-HHHHHHHHcCCCEEEEee--CCEEEEEEEHHHHHHHHHhccCCccccCHHHH
Confidence 5799999987 6789999999999 999999999999999964 389999999999975311 123466666
Q ss_pred hhhhcCCceEEcCCCCHHHHHHHHHhcCCceEEEEEEeCCCCCCCCCCceeeeecHHHHHHHHHhcccccc
Q psy4847 114 CQFYQNSCYFVFEDTTLDVLLKQFKEGIKGHMAFVHRVNNEGEGDPFYETVGLITLEDVIEELIQAEIMDE 184 (396)
Q Consensus 114 ~~~~~~~v~~V~~dt~L~~~L~~f~~~~~~h~avV~~~~~~~~~De~g~~vGIVTleDIiEeli~~eI~DE 184 (396)
| .+++++|.+++++.+++..|.+. +.+.++|+ | .|+++|+||..||++.+. .+..++
T Consensus 84 m---~~~~~~v~~~~~l~~~~~~m~~~-~~~~lpVv--------d-~g~~~Giit~~dil~~l~-~~~~~~ 140 (157)
T 4fry_A 84 M---TAKVRYVEPSQSTDECMALMTEH-RMRHLPVL--------D-GGKLIGLISIGDLVKSVI-ADQQFT 140 (157)
T ss_dssp S---BSSCCCBCTTSBHHHHHHHHHHH-TCSEEEEE--------E-TTEEEEEEEHHHHHHHHH-TTCCCC
T ss_pred c---CCCCcEECCCCcHHHHHHHHHHc-CCCEEEEE--------E-CCEEEEEEEHHHHHHHHH-HHHHhh
Confidence 5 47889999999999999999995 67777777 6 589999999999999998 454443
No 37
>1o50_A CBS domain-containing predicted protein TM0935; CBS-domain PAIR fold, structural genomics, joint center for structural genomics, JCSG; 1.87A {Thermotoga maritima} SCOP: d.37.1.1
Probab=99.59 E-value=6.3e-15 Score=128.39 Aligned_cols=120 Identities=21% Similarity=0.196 Sum_probs=102.5
Q ss_pred ccccccccccccCCCEEEEeCCCChhHHHHHHHHHcCCcE-EEEEeCCCCcEEEEEEhhhhccc----------------
Q psy4847 40 LRRKIVGDVMTKLEDVYMLSYDAILDFETVSEIMKSGYSR-IPVYEDRRTNIVTMFYIKDLALV---------------- 102 (396)
Q Consensus 40 l~~~tV~dIMtp~~dv~~l~~d~~l~~e~i~~i~~~g~sr-iPV~~~~~~~IVGiL~vkDLl~~---------------- 102 (396)
+...+|+++|++. +.+++.++++. ++++.|.++++++ +||++++ +++|+|+.+||+..
T Consensus 13 ~~~~~v~~im~~~--~~~v~~~~tl~-ea~~~m~~~~~~~~~~Vvd~~--~~vGivt~~dl~~~~~~~~~~~~~~~~~~~ 87 (157)
T 1o50_A 13 MKVKDVCKLISLK--PTVVEEDTPIE-EIVDRILEDPVTRTVYVARDN--KLVGMIPVMHLLKVSGFHFFGFIPKEELIR 87 (157)
T ss_dssp CBHHHHTTSSCCC--CEEECTTCBHH-HHHHHHHHSTTCCEEEEEETT--EEEEEEEHHHHHHHHHHHHHCCCC------
T ss_pred hccccHhhcccCC--CceECCCCCHH-HHHHHHHhCCCCccEEEEECC--EEEEEEEHHHHHHHHhhhHHhhhccHHHHH
Confidence 6788999999864 89999999999 9999999999999 9999864 89999999999753
Q ss_pred ---CCccccchhhhhhhhcCCceEEcCCCCHHHHHHHHHhcCCceEEEEEEeCCCCCCCCCCceeeeecHHHHHHHHH
Q psy4847 103 ---DPDDNTPLKTLCQFYQNSCYFVFEDTTLDVLLKQFKEGIKGHMAFVHRVNNEGEGDPFYETVGLITLEDVIEELI 177 (396)
Q Consensus 103 ---~~~~~~~l~~v~~~~~~~v~~V~~dt~L~~~L~~f~~~~~~h~avV~~~~~~~~~De~g~~vGIVTleDIiEeli 177 (396)
......++.++| .+ +++|.+++++.+++..|.+. +.+.++|+ |+.|+++|+||..||++.+.
T Consensus 88 ~~~~~~~~~~v~~im---~~-~~~v~~~~~l~~a~~~m~~~-~~~~lpVv--------d~~g~~vGiit~~dll~~l~ 152 (157)
T 1o50_A 88 SSMKRLIAKNASEIM---LD-PVYVHMDTPLEEALKLMIDN-NIQEMPVV--------DEKGEIVGDLNSLEILLALW 152 (157)
T ss_dssp -CCCCCSSCBHHHHC---BC-CCCBCTTSBHHHHHHHHHHH-TCSEEEEE--------CTTSCEEEEEEHHHHHHHHH
T ss_pred HHHHHHcCCcHHHHc---CC-CeEECCCCCHHHHHHHHHHC-CCcEEEEE--------cCCCEEEEEEEHHHHHHHHH
Confidence 111234566665 46 88999999999999999996 67777787 87899999999999999987
No 38
>1y5h_A Hypothetical protein RV2626C; CBS domain, unknown function; 1.50A {Mycobacterium tuberculosis} SCOP: d.37.1.1 PDB: 1xkf_A
Probab=99.59 E-value=1.9e-15 Score=127.38 Aligned_cols=121 Identities=17% Similarity=0.231 Sum_probs=99.4
Q ss_pred ccccccccccccCCCEEEEeCCCChhHHHHHHHHHcCCcEEEEEeCCCCcEEEEEEhhhhc-ccCCc----cccchhhhh
Q psy4847 40 LRRKIVGDVMTKLEDVYMLSYDAILDFETVSEIMKSGYSRIPVYEDRRTNIVTMFYIKDLA-LVDPD----DNTPLKTLC 114 (396)
Q Consensus 40 l~~~tV~dIMtp~~dv~~l~~d~~l~~e~i~~i~~~g~sriPV~~~~~~~IVGiL~vkDLl-~~~~~----~~~~l~~v~ 114 (396)
+.-.+|+++|++. +.+++.++++. ++++.|.+++++++||++++ ++++|+|+.+||+ ..... ...++.++|
T Consensus 5 ~~~~~v~~im~~~--~~~v~~~~~~~-~a~~~~~~~~~~~~~Vvd~~-~~~~Givt~~dl~~~~~~~~~~~~~~~v~~~m 80 (133)
T 1y5h_A 5 FTMTTARDIMNAG--VTCVGEHETLT-AAAQYMREHDIGALPICGDD-DRLHGMLTDRDIVIKGLAAGLDPNTATAGELA 80 (133)
T ss_dssp ---CCHHHHSEET--CCCEETTSBHH-HHHHHHHHHTCSEEEEECGG-GBEEEEEEHHHHHHTTGGGTCCTTTSBHHHHH
T ss_pred hhhcCHHHHhcCC--ceEeCCCCCHH-HHHHHHHHhCCCeEEEECCC-CeEEEEEeHHHHHHHHHhcCCCccccCHHHHh
Confidence 3456899999864 78899999999 99999999999999999754 7999999999997 33211 124566665
Q ss_pred hhhcCCceEEcCCCCHHHHHHHHHhcCCceEEEEEEeCCCCCCCCCCceeeeecHHHHHHHHH
Q psy4847 115 QFYQNSCYFVFEDTTLDVLLKQFKEGIKGHMAFVHRVNNEGEGDPFYETVGLITLEDVIEELI 177 (396)
Q Consensus 115 ~~~~~~v~~V~~dt~L~~~L~~f~~~~~~h~avV~~~~~~~~~De~g~~vGIVTleDIiEeli 177 (396)
.++++++.+++++.++++.|.+. +.+.++|+ |+ |+++|+||..||++.+.
T Consensus 81 ---~~~~~~v~~~~~l~~~~~~m~~~-~~~~l~Vv--------d~-g~~~Giit~~dil~~l~ 130 (133)
T 1y5h_A 81 ---RDSIYYVDANASIQEMLNVMEEH-QVRRVPVI--------SE-HRLVGIVTEADIARHLP 130 (133)
T ss_dssp ---TTCCCCEETTCCHHHHHHHHHHH-TCSEEEEE--------ET-TEEEEEEEHHHHHHTCC
T ss_pred ---cCCCEEECCCCCHHHHHHHHHHc-CCCEEEEE--------EC-CEEEEEEEHHHHHHHHH
Confidence 47889999999999999999996 67777777 66 89999999999998875
No 39
>3fv6_A YQZB protein; CBS domain dimer, metabolism regulator, central glycolytic G regulator, transcription; 1.95A {Bacillus subtilis} PDB: 3fwr_A* 3fws_A*
Probab=99.58 E-value=6.3e-15 Score=128.79 Aligned_cols=131 Identities=12% Similarity=0.159 Sum_probs=106.2
Q ss_pred HHHHHHhcccccccccccccCCCEEEEeCCCChhHHHHHHHHHcCCcEEEEEeCCCCcEEEEEEhhhhcccC-C---ccc
Q psy4847 32 NIISGALELRRKIVGDVMTKLEDVYMLSYDAILDFETVSEIMKSGYSRIPVYEDRRTNIVTMFYIKDLALVD-P---DDN 107 (396)
Q Consensus 32 ~~i~~alel~~~tV~dIMtp~~dv~~l~~d~~l~~e~i~~i~~~g~sriPV~~~~~~~IVGiL~vkDLl~~~-~---~~~ 107 (396)
..+... |...+|+++|++ .++++.++++. ++++.|.+++++++||++++ ++++|+|+.+||+... . ...
T Consensus 8 ~~l~~~--l~~~~v~~im~~---~~~v~~~~~~~-~a~~~m~~~~~~~~~Vvd~~-~~~~Givt~~dl~~~~~~~~~~~~ 80 (159)
T 3fv6_A 8 QLLADK--LKKLQVKDFQSI---PVVIHENVSVY-DAICTMFLEDVGTLFVVDRD-AVLVGVLSRKDLLRASIGQQELTS 80 (159)
T ss_dssp HHHHHH--HTTCBGGGSCBC---CCEEETTSBHH-HHHHHHHHHTCSEEEEECTT-SCEEEEEEHHHHHHHHTSCSCTTT
T ss_pred HHHHHH--HhhCCHHHHcCC---CEEECCCCcHH-HHHHHHHHCCCCEEEEEcCC-CcEEEEEeHHHHHHHhhccCcccC
Confidence 334444 577899999986 24899999999 99999999999999999865 7999999999997531 1 123
Q ss_pred cchhhhhhhhcC--CceEEcCCCCHHHHHHHHHhcCCceEEEEEEeCCCCCCCCCC---ceeeeecHHHHHHHHHhcccc
Q psy4847 108 TPLKTLCQFYQN--SCYFVFEDTTLDVLLKQFKEGIKGHMAFVHRVNNEGEGDPFY---ETVGLITLEDVIEELIQAEIM 182 (396)
Q Consensus 108 ~~l~~v~~~~~~--~v~~V~~dt~L~~~L~~f~~~~~~h~avV~~~~~~~~~De~g---~~vGIVTleDIiEeli~~eI~ 182 (396)
.++.++|. + ++.+|.+++++.+++..|.+. +.+.++|+ |+.| +++|+||..||++.+. ++.
T Consensus 81 ~~v~~~m~---~~~~~~~v~~~~~l~~a~~~m~~~-~~~~lpVv--------d~~g~~~~~vGiit~~dil~~l~--~~~ 146 (159)
T 3fv6_A 81 VPVHIIMT---RMPNITVCRREDYVMDIAKHLIEK-QIDALPVI--------KDTDKGFEVIGRVTKTNMTKILV--SLS 146 (159)
T ss_dssp CBGGGTSE---ETTSCCCBCTTSBHHHHHHHHHHH-TCSEEEEE--------EECSSSEEEEEEEEHHHHHHHHH--HHH
T ss_pred cCHHHHHc---CCCCcEEECCCCCHHHHHHHHHHc-CCcEEEEE--------eCCCcceeEEEEEEHHHHHHHHH--HHh
Confidence 46666653 5 788999999999999999985 67777777 6667 9999999999999997 454
Q ss_pred c
Q psy4847 183 D 183 (396)
Q Consensus 183 D 183 (396)
.
T Consensus 147 ~ 147 (159)
T 3fv6_A 147 E 147 (159)
T ss_dssp T
T ss_pred h
Confidence 4
No 40
>2o16_A Acetoin utilization protein ACUB, putative; structural genomics, unknown function, PSI-2, protein struct initiative; 1.90A {Vibrio cholerae} SCOP: d.37.1.1
Probab=99.58 E-value=5.7e-15 Score=129.39 Aligned_cols=120 Identities=18% Similarity=0.128 Sum_probs=100.8
Q ss_pred cccccccccccCCCEEEEeCCCChhHHHHHHHHHcCCcEEEEEeCCCCcEEEEEEhhhhcccC------------Ccccc
Q psy4847 41 RRKIVGDVMTKLEDVYMLSYDAILDFETVSEIMKSGYSRIPVYEDRRTNIVTMFYIKDLALVD------------PDDNT 108 (396)
Q Consensus 41 ~~~tV~dIMtp~~dv~~l~~d~~l~~e~i~~i~~~g~sriPV~~~~~~~IVGiL~vkDLl~~~------------~~~~~ 108 (396)
...+|+++|++. +++++.++++. ++++.|.+++++++||++++ ++++|+|+.+||+... .....
T Consensus 3 ~~~~v~dim~~~--~~~v~~~~tl~-~a~~~m~~~~~~~~pVvd~~-~~lvGivt~~dl~~~~~~~~~~~~~~~~~~~~~ 78 (160)
T 2o16_A 3 LMIKVEDMMTRH--PHTLLRTHTLN-DAKHLMEALDIRHVPIVDAN-KKLLGIVSQRDLLAAQESSLQRSAQGDSLAFET 78 (160)
T ss_dssp CCCBGGGTSEES--CCCBCTTSBHH-HHHHHHHHHTCSEEEEECTT-CBEEEEEEHHHHHHHHHHHCC---------CCC
T ss_pred CcCcHHHHhcCC--CeEECCCCcHH-HHHHHHHHcCCCEEEEEcCC-CcEEEEEeHHHHHHHHHHhhcccccccchhccc
Confidence 457899999874 78899999999 99999999999999999765 7999999999997431 11234
Q ss_pred chhhhhhhhcCCceEEcCCCCHHHHHHHHHhcCCceEEEEEEeCCCCCCCCCCceeeeecHHHHHHHHH
Q psy4847 109 PLKTLCQFYQNSCYFVFEDTTLDVLLKQFKEGIKGHMAFVHRVNNEGEGDPFYETVGLITLEDVIEELI 177 (396)
Q Consensus 109 ~l~~v~~~~~~~v~~V~~dt~L~~~L~~f~~~~~~h~avV~~~~~~~~~De~g~~vGIVTleDIiEeli 177 (396)
++.++| .+++++|.+++++.+++..|.+. +.+.++|+ |+ |+++||||..||++.+.
T Consensus 79 ~v~~im---~~~~~~v~~~~~l~~a~~~m~~~-~~~~lpVv--------d~-g~lvGiit~~dil~~~~ 134 (160)
T 2o16_A 79 PLFEVM---HTDVTSVAPQAGLKESAIYMQKH-KIGCLPVV--------AK-DVLVGIITDSDFVTIAI 134 (160)
T ss_dssp BHHHHS---CSCEEEBCTTSBHHHHHHHHHHT-TCSCEEEE--------ET-TEEEEEECHHHHHHHHH
T ss_pred CHHHHh---cCCCeEECCCCCHHHHHHHHHHh-CCCEEEEE--------EC-CEEEEEEEHHHHHHHHH
Confidence 566665 57899999999999999999995 67777777 66 89999999999999886
No 41
>2nyc_A Nuclear protein SNF4; bateman2 domain, AMP kinase, protein binding; 1.90A {Saccharomyces cerevisiae} SCOP: d.37.1.1 PDB: 2nye_A
Probab=99.58 E-value=6.6e-15 Score=125.09 Aligned_cols=126 Identities=13% Similarity=0.275 Sum_probs=101.5
Q ss_pred ccccccccc---ccccCCCEEEEeCCCChhHHHHHHHHHcCCcEEEEEeCCCCcEEEEEEhhhhcccCC-----ccccch
Q psy4847 39 ELRRKIVGD---VMTKLEDVYMLSYDAILDFETVSEIMKSGYSRIPVYEDRRTNIVTMFYIKDLALVDP-----DDNTPL 110 (396)
Q Consensus 39 el~~~tV~d---IMtp~~dv~~l~~d~~l~~e~i~~i~~~g~sriPV~~~~~~~IVGiL~vkDLl~~~~-----~~~~~l 110 (396)
++-++++++ +|++ ++++++.++++. ++++.|.+++++++||++++ ++++|+|+.+||+.... ....++
T Consensus 4 ~~~~~~v~~~~~~~~~--~~~~v~~~~~~~-~a~~~~~~~~~~~~~Vvd~~-~~~~Givt~~dl~~~~~~~~~~~~~~~v 79 (144)
T 2nyc_A 4 HFLKIPIGDLNIITQD--NMKSCQMTTPVI-DVIQMLTQGRVSSVPIIDEN-GYLINVYEAYDVLGLIKGGIYNDLSLSV 79 (144)
T ss_dssp GGGGSBGGGSSCCBCS--SCCCBCTTSBHH-HHHHHHHHHTCSEEEEECTT-CBEEEEEEHHHHHHHHHTC----CCSBH
T ss_pred chhhcchhhcCCCCCC--CceEECCCCcHH-HHHHHHHHcCcceeeEEcCC-CcEEEEEcHHHHHHHhcccccccCCccH
Confidence 355778999 7874 488999999999 99999999999999999865 79999999999975311 123467
Q ss_pred hhhhhhhc---CCceEEcCCCCHHHHHHHHHhcCCceEEEEEEeCCCCCCCCCCceeeeecHHHHHHHHH
Q psy4847 111 KTLCQFYQ---NSCYFVFEDTTLDVLLKQFKEGIKGHMAFVHRVNNEGEGDPFYETVGLITLEDVIEELI 177 (396)
Q Consensus 111 ~~v~~~~~---~~v~~V~~dt~L~~~L~~f~~~~~~h~avV~~~~~~~~~De~g~~vGIVTleDIiEeli 177 (396)
.++|..-. +++.+|.+++++.++++.|.+. +.+.++|+ |+.|+++|+||..||++.+.
T Consensus 80 ~~~m~~~~~~~~~~~~v~~~~~l~~~~~~m~~~-~~~~l~Vv--------d~~g~~~Giit~~dil~~l~ 140 (144)
T 2nyc_A 80 GEALMRRSDDFEGVYTCTKNDKLSTIMDNIRKA-RVHRFFVV--------DDVGRLVGVLTLSDILKYIL 140 (144)
T ss_dssp HHHHHHCC------CEECTTSBHHHHHHHHHHH-TCSEEEEE--------CTTSBEEEEEEHHHHHHHHH
T ss_pred HHHHhcCccccCCCeEECCCCcHHHHHHHHHHC-CCCEEEEE--------CCCCCEEEEEEHHHHHHHHH
Confidence 77664100 1688999999999999999985 67778888 88899999999999999987
No 42
>2j9l_A Chloride channel protein 5; ION channel, ION transport, voltage-gated; HET: ATP; 2.30A {Homo sapiens} SCOP: d.37.1.1 PDB: 2ja3_A*
Probab=99.58 E-value=4e-15 Score=132.17 Aligned_cols=124 Identities=18% Similarity=0.275 Sum_probs=102.5
Q ss_pred ccccccccccccCCC--EEEE--eCCCChhHHHHHHHHHcCCcEEEEEe-CCCCcEEEEEEhhhhcccC-----------
Q psy4847 40 LRRKIVGDVMTKLED--VYML--SYDAILDFETVSEIMKSGYSRIPVYE-DRRTNIVTMFYIKDLALVD----------- 103 (396)
Q Consensus 40 l~~~tV~dIMtp~~d--v~~l--~~d~~l~~e~i~~i~~~g~sriPV~~-~~~~~IVGiL~vkDLl~~~----------- 103 (396)
+...+|+++|++..+ ++++ +.++++. ++++.|.+++++++||++ ++.++++|+|+.+||+...
T Consensus 8 ~~~~~v~dim~~~~~~~~~~v~~~~~~~~~-~a~~~~~~~~~~~~pVv~~d~~~~lvGiit~~dl~~~~~~~~~~~~~~~ 86 (185)
T 2j9l_A 8 AHKTLAMDVMKPRRNDPLLTVLTQDSMTVE-DVETIISETTYSGFPVVVSRESQRLVGFVLRRDLIISIENARKKQDGVV 86 (185)
T ss_dssp -CCCBHHHHSBSCTTSCCCCCEESSCEEHH-HHHHHHHHCCCSEEEEESCTTTCBEEEEEEHHHHHHHHHHHHTSCSCCC
T ss_pred hccCcHHHHhcccccCceEEEecCCCccHH-HHHHHHHhcCCCceeEEEECCCCeEEEEEEHHHHHHHHHhhcccCCCcc
Confidence 468899999998744 6677 9999999 999999999999999994 2348999999999997431
Q ss_pred -----------------CccccchhhhhhhhcCCceEEcCCCCHHHHHHHHHhcCCceEEEEEEeCCCCCCCCCCceeee
Q psy4847 104 -----------------PDDNTPLKTLCQFYQNSCYFVFEDTTLDVLLKQFKEGIKGHMAFVHRVNNEGEGDPFYETVGL 166 (396)
Q Consensus 104 -----------------~~~~~~l~~v~~~~~~~v~~V~~dt~L~~~L~~f~~~~~~h~avV~~~~~~~~~De~g~~vGI 166 (396)
.....++.++| .+++++|.+++++.+++..|.+. +.+.++|+ | .|+++||
T Consensus 87 ~~~~~~~~~~~~~~~~~~~~~~~v~~im---~~~~~~v~~~~~l~~a~~~m~~~-~~~~l~Vv--------d-~g~~vGi 153 (185)
T 2j9l_A 87 STSIIYFTEHSPPLPPYTPPTLKLRNIL---DLSPFTVTDLTPMEIVVDIFRKL-GLRQCLVT--------H-NGRLLGI 153 (185)
T ss_dssp TTCEEECSSSCCCCCTTCCCCEECGGGE---ESSCCEEETTSBHHHHHHHHHHH-TCSEEEEE--------E-TTEEEEE
T ss_pred ccceeecccCCcccccccccCccHHHhh---CcCCeEeCCCCCHHHHHHHHHhC-CCcEEEEE--------E-CCEEEEE
Confidence 01223555554 57889999999999999999985 77888887 6 6899999
Q ss_pred ecHHHHHHHHH
Q psy4847 167 ITLEDVIEELI 177 (396)
Q Consensus 167 VTleDIiEeli 177 (396)
||..||++.+.
T Consensus 154 it~~dll~~l~ 164 (185)
T 2j9l_A 154 ITKKDVLKHIA 164 (185)
T ss_dssp EEHHHHHHHHH
T ss_pred EEHHHHHHHHH
Confidence 99999999997
No 43
>1pbj_A Hypothetical protein; structural genomics, domain, PSI, protein structure initiative; 1.40A {Methanothermobacter thermautotrophicusdelta H} SCOP: d.37.1.1
Probab=99.57 E-value=6.7e-15 Score=122.26 Aligned_cols=117 Identities=15% Similarity=0.170 Sum_probs=98.6
Q ss_pred cccccccccCCCEEEEeCCCChhHHHHHHHHHcCCcEEEEEeCCCCcEEEEEEhhhhcccCC---c-cccchhhhhhhhc
Q psy4847 43 KIVGDVMTKLEDVYMLSYDAILDFETVSEIMKSGYSRIPVYEDRRTNIVTMFYIKDLALVDP---D-DNTPLKTLCQFYQ 118 (396)
Q Consensus 43 ~tV~dIMtp~~dv~~l~~d~~l~~e~i~~i~~~g~sriPV~~~~~~~IVGiL~vkDLl~~~~---~-~~~~l~~v~~~~~ 118 (396)
.+|+++|++ ++.+++.++++. ++++.|.+++++++||++ + ++++|+|+.+||+.... . ...++.++| .
T Consensus 1 m~v~~~m~~--~~~~v~~~~~~~-~a~~~~~~~~~~~~~Vvd-~-~~~~G~it~~dl~~~~~~~~~~~~~~v~~~m---~ 72 (125)
T 1pbj_A 1 MRVEDVMVT--DVDTIDITASLE-DVLRNYVENAKGSSVVVK-E-GVRVGIVTTWDVLEAIAEGDDLAEVKVWEVM---E 72 (125)
T ss_dssp -CHHHHCBC--SCCEEETTCBHH-HHHHHHHHHCCCEEEEEE-T-TEEEEEEEHHHHHHHHHHTCCTTTSBHHHHC---B
T ss_pred CCHHHhcCC--CceEECCCCcHH-HHHHHHHHcCCCEEEEEe-C-CeeEEEEeHHHHHHHHhcCCcccccCHHHHc---C
Confidence 368999986 478999999999 999999999999999998 4 89999999999975311 1 234566665 4
Q ss_pred CCceEEcCCCCHHHHHHHHHhcCCceEEEEEEeCCCCCCCCCCceeeeecHHHHHHHHH
Q psy4847 119 NSCYFVFEDTTLDVLLKQFKEGIKGHMAFVHRVNNEGEGDPFYETVGLITLEDVIEELI 177 (396)
Q Consensus 119 ~~v~~V~~dt~L~~~L~~f~~~~~~h~avV~~~~~~~~~De~g~~vGIVTleDIiEeli 177 (396)
+++.++.+++++.++++.|.+. +.+.++|+ |+ |+++|+||..||++.+.
T Consensus 73 ~~~~~v~~~~~l~~~~~~~~~~-~~~~l~Vv--------d~-~~~~Gvit~~dl~~~l~ 121 (125)
T 1pbj_A 73 RDLVTISPRATIKEAAEKMVKN-VVWRLLVE--------ED-DEIIGVISATDILRAKM 121 (125)
T ss_dssp CGGGEECTTSCHHHHHHHHHHH-TCSEEEEE--------ET-TEEEEEEEHHHHHHHHC
T ss_pred CCCeEECCCCCHHHHHHHHHhc-CCcEEEEE--------EC-CEEEEEEEHHHHHHHHH
Confidence 7889999999999999999985 67777777 66 99999999999999986
No 44
>2pfi_A Chloride channel protein CLC-Ka; cystathionine beta synthetase (CBS) domains containing protein, transport protein; 1.60A {Homo sapiens}
Probab=99.56 E-value=1e-14 Score=126.78 Aligned_cols=127 Identities=17% Similarity=0.195 Sum_probs=102.4
Q ss_pred HHHhcccccccccccccCCCEEEEeCCCChhHHHHHHHHHcCCcEEEEEeC-CCCcEEEEEEhhhhcccCC----c----
Q psy4847 35 SGALELRRKIVGDVMTKLEDVYMLSYDAILDFETVSEIMKSGYSRIPVYED-RRTNIVTMFYIKDLALVDP----D---- 105 (396)
Q Consensus 35 ~~alel~~~tV~dIMtp~~dv~~l~~d~~l~~e~i~~i~~~g~sriPV~~~-~~~~IVGiL~vkDLl~~~~----~---- 105 (396)
.+.+.+...+|+++|++. +++++.++++. ++++.|.+++++++||+++ +.++++|+|+.+||+.... .
T Consensus 5 ~~~~~~~~~~v~dim~~~--~~~v~~~~~~~-~a~~~~~~~~~~~~pVvd~~~~~~~~Givt~~dl~~~~~~~~~~~~~~ 81 (164)
T 2pfi_A 5 GRNIGSHHVRVEHFMNHS--ITTLAKDTPLE-EVVKVVTSTDVTEYPLVESTESQILVGIVQRAQLVQALQAEPPSRAPG 81 (164)
T ss_dssp -----CCSCBHHHHCBCC--CCCEETTCBHH-HHHHHHHTCCCSEEEEESCTTTCBEEEEEEHHHHHHHHHC-------C
T ss_pred cccccccCCCHHHHcCCC--CeEECCCCcHH-HHHHHHHhCCCCceeEEecCCCCEEEEEEEHHHHHHHHHhhccccCCc
Confidence 345567889999999974 78899999999 9999999999999999986 2489999999999974321 0
Q ss_pred cccchhhhhhhhcCC------ceEEcCCCCHHHHHHHHHhcCCceEEEEEEeCCCCCCCCCCceeeeecHHHHHHHHH
Q psy4847 106 DNTPLKTLCQFYQNS------CYFVFEDTTLDVLLKQFKEGIKGHMAFVHRVNNEGEGDPFYETVGLITLEDVIEELI 177 (396)
Q Consensus 106 ~~~~l~~v~~~~~~~------v~~V~~dt~L~~~L~~f~~~~~~h~avV~~~~~~~~~De~g~~vGIVTleDIiEeli 177 (396)
...++.++|. .+ +.+|.+++++.+++..|.+. +.+.++|+ | .|+++||||..||++.+.
T Consensus 82 ~~~~v~~~m~---~~~~~~~~~~~v~~~~~l~~~~~~m~~~-~~~~lpVv--------d-~g~l~Giit~~dil~~~~ 146 (164)
T 2pfi_A 82 HQQCLQDILA---RGCPTEPVTLTLFSETTLHQAQNLFKLL-NLQSLFVT--------S-RGRAVGCVSWVEMKKAIS 146 (164)
T ss_dssp CCCBHHHHHH---TTCCCBCCCCCEETTCBHHHHHHHHHHT-TCSEEEEE--------E-TTEEEEEEEHHHHHHHHH
T ss_pred ccchhhhhhc---ccccccCCceEECCCCcHHHHHHHHHHh-CCCEEEEE--------E-CCEEEEEEEHHHHHHHHH
Confidence 1235666664 44 67899999999999999995 77778887 6 589999999999999987
No 45
>2uv4_A 5'-AMP-activated protein kinase subunit gamma-1; transferase, CBS domain, lipid synthesis, fatty acid biosynthesis; HET: AMP; 1.33A {Homo sapiens} PDB: 2uv5_A* 2uv6_A* 2uv7_A*
Probab=99.52 E-value=3.1e-14 Score=123.31 Aligned_cols=123 Identities=16% Similarity=0.300 Sum_probs=100.9
Q ss_pred ccccccccccccCCCEEEEeCCCChhHHHHHHHHHcCCcEEEEEeCCCCcEEEEEEhhhhcccC--C---ccccchhhhh
Q psy4847 40 LRRKIVGDVMTKLEDVYMLSYDAILDFETVSEIMKSGYSRIPVYEDRRTNIVTMFYIKDLALVD--P---DDNTPLKTLC 114 (396)
Q Consensus 40 l~~~tV~dIMtp~~dv~~l~~d~~l~~e~i~~i~~~g~sriPV~~~~~~~IVGiL~vkDLl~~~--~---~~~~~l~~v~ 114 (396)
+.+.+|+++ .++.+++.++++. ++++.|.+++++.+||++++ ++++|+|+.+||+... . ....++.++|
T Consensus 20 l~~~~v~~~----~~~~~v~~~~~~~-~a~~~m~~~~~~~~pVvd~~-~~~vGivt~~dl~~~~~~~~~~~~~~~v~~~m 93 (152)
T 2uv4_A 20 LEELQIGTY----ANIAMVRTTTPVY-VALGIFVQHRVSALPVVDEK-GRVVDIYSKFDVINLAAEKTYNNLDVSVTKAL 93 (152)
T ss_dssp HHHHTCSBC----SSCCCEETTCBHH-HHHHHHHHHCCSEEEEECTT-SBEEEEEEHHHHHHHHHCSSCCCTTSBGGGGG
T ss_pred HHHccCCcc----CCceEeCCCCcHH-HHHHHHHHcCCceEeEECCC-CcEEEEEeHHHHHHHhcchhhhhhcchHHHHH
Confidence 467788888 3478899999999 99999999999999999865 8999999999997531 1 1134566665
Q ss_pred hh---hcCCceEEcCCCCHHHHHHHHHhcCCceEEEEEEeCCCCCCCCCCceeeeecHHHHHHHHH
Q psy4847 115 QF---YQNSCYFVFEDTTLDVLLKQFKEGIKGHMAFVHRVNNEGEGDPFYETVGLITLEDVIEELI 177 (396)
Q Consensus 115 ~~---~~~~v~~V~~dt~L~~~L~~f~~~~~~h~avV~~~~~~~~~De~g~~vGIVTleDIiEeli 177 (396)
.. |.+++++|.+++++.+++..|.+. +.+.++|+ |++|+++|+||..||++.+.
T Consensus 94 ~~~~~~~~~~~~v~~~~~l~~a~~~m~~~-~~~~lpVv--------d~~g~~vGiit~~dil~~l~ 150 (152)
T 2uv4_A 94 QHRSHYFEGVLKCYLHETLETIINRLVEA-EVHRLVVV--------DENDVVKGIVSLSDILQALV 150 (152)
T ss_dssp GTCCHHHHTCSEECTTSBHHHHHHHHHHH-TCSEEEEE--------CTTSBEEEEEEHHHHHHHHC
T ss_pred hhhhcccCCCeEECCCCcHHHHHHHHHHc-CCeEEEEE--------CCCCeEEEEEEHHHHHHHHH
Confidence 31 115788999999999999999985 67778888 88899999999999999885
No 46
>3ddj_A CBS domain-containing protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: AMP; 1.80A {Sulfolobus solfataricus} SCOP: d.37.1.1 d.37.1.1
Probab=99.51 E-value=7.2e-14 Score=133.41 Aligned_cols=128 Identities=16% Similarity=0.186 Sum_probs=107.9
Q ss_pred HHHHhcccccccccccccCCCEEEEeCCCChhHHHHHHHHHcCCcEEEEEeCCCCcEEEEEEhhhhcccCC--ccccchh
Q psy4847 34 ISGALELRRKIVGDVMTKLEDVYMLSYDAILDFETVSEIMKSGYSRIPVYEDRRTNIVTMFYIKDLALVDP--DDNTPLK 111 (396)
Q Consensus 34 i~~alel~~~tV~dIMtp~~dv~~l~~d~~l~~e~i~~i~~~g~sriPV~~~~~~~IVGiL~vkDLl~~~~--~~~~~l~ 111 (396)
..+.+.+.+.+|+++|++. +++++.++++. ++++.|.+++++++||++++ ++++|+++.+|++.... ....++.
T Consensus 84 ~~~~~~~~~~~v~~im~~~--~~~v~~~~~~~-~a~~~m~~~~~~~lpVvd~~-~~lvGivt~~dl~~~~~~~~~~~~v~ 159 (296)
T 3ddj_A 84 QGDLYHISTTPIIDYMTPN--PVTVYNTSDEF-TAINIMVTRNFGSLPVVDIN-DKPVGIVTEREFLLLYKDLDEIFPVK 159 (296)
T ss_dssp HHHHHHHHTSBGGGTSEES--CCCEETTSCHH-HHHHHHHHHTCSEEEEECTT-SCEEEEEEHHHHGGGGGGSCCCCBHH
T ss_pred chhhHHHhcccHHHhccCC--CEEEcCCCCHH-HHHHHHHHcCCCEEEEEcCC-CcEEEEEeHHHHHHhhhcccccccHH
Confidence 3445556688999999974 78999999999 99999999999999999765 79999999999975322 1223566
Q ss_pred hhhhhhcCCceEEcCCCCHHHHHHHHHhcCCceEEEEEEeCCCCCCCCCCceeeeecHHHHHHHHH
Q psy4847 112 TLCQFYQNSCYFVFEDTTLDVLLKQFKEGIKGHMAFVHRVNNEGEGDPFYETVGLITLEDVIEELI 177 (396)
Q Consensus 112 ~v~~~~~~~v~~V~~dt~L~~~L~~f~~~~~~h~avV~~~~~~~~~De~g~~vGIVTleDIiEeli 177 (396)
++| .+++.++++++++.++++.|.+. +.+.++|+ |++|+++|+||..||++.+.
T Consensus 160 ~~m---~~~~~~v~~~~~l~~~~~~m~~~-~~~~~~Vv--------d~~~~~~Givt~~dl~~~~~ 213 (296)
T 3ddj_A 160 VFM---STKVQTIYKEVRLDQAVKLMLRR-GFRRLPVI--------DDDNKVVGIVTVVNAIKQLA 213 (296)
T ss_dssp HHS---BCSCCCEETTSBHHHHHHHHHHH-TCSEEEEE--------CTTSCEEEEEEHHHHHHHHH
T ss_pred Hhh---cCCCeEECCCCCHHHHHHHHHHc-CCCEEEEE--------cCCCEEEEEEEHHHHHHHHH
Confidence 655 58889999999999999999995 77788888 88899999999999999986
No 47
>1vr9_A CBS domain protein/ACT domain protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI; HET: MSE; 1.70A {Thermotoga maritima} SCOP: d.37.1.1
Probab=99.48 E-value=3.3e-13 Score=124.32 Aligned_cols=119 Identities=19% Similarity=0.183 Sum_probs=102.1
Q ss_pred cccccccccccCCCEEEEeCCCChhHHHHHHHHHcCCcEEEEEeCCCCcEEEEEEhhhhcccCCccccchhhhhhhhcCC
Q psy4847 41 RRKIVGDVMTKLEDVYMLSYDAILDFETVSEIMKSGYSRIPVYEDRRTNIVTMFYIKDLALVDPDDNTPLKTLCQFYQNS 120 (396)
Q Consensus 41 ~~~tV~dIMtp~~dv~~l~~d~~l~~e~i~~i~~~g~sriPV~~~~~~~IVGiL~vkDLl~~~~~~~~~l~~v~~~~~~~ 120 (396)
...+++++|++. ++++++++++. ++++.|.+++++++||++++ ++++|+|+.+||+...+ ..+++++| .++
T Consensus 11 ~~~~~~~~~~~~--~~~v~~~~tv~-ea~~~m~~~~~~~~pVvd~~-~~l~Givt~~dl~~~~~--~~~v~~im---~~~ 81 (213)
T 1vr9_A 11 HHMKVKKWVTQD--FPMVEESATVR-ECLHRMRQYQTNECIVKDRE-GHFRGVVNKEDLLDLDL--DSSVFNKV---SLP 81 (213)
T ss_dssp --CBGGGGCBSC--SCEEETTCBHH-HHHHHHHHTTSSEEEEECTT-SBEEEEEEGGGGTTSCT--TSBSGGGC---BCT
T ss_pred cccCHHHhhcCC--CeEECCCCcHH-HHHHHHHHCCCCEEEEEcCC-CEEEEEEEHHHHHhhcC--CCcHHHHc---cCC
Confidence 356799999864 78999999999 99999999999999999755 79999999999987654 33667766 478
Q ss_pred ceEEcCCCCHHHHHHHHHhcCCceEEEEEEeCCCCCCCCCCceeeeecHHHHHHHHH
Q psy4847 121 CYFVFEDTTLDVLLKQFKEGIKGHMAFVHRVNNEGEGDPFYETVGLITLEDVIEELI 177 (396)
Q Consensus 121 v~~V~~dt~L~~~L~~f~~~~~~h~avV~~~~~~~~~De~g~~vGIVTleDIiEeli 177 (396)
++++.+++++.++++.|.+. +.+.++|+ |+.|+++||||..||++.+.
T Consensus 82 ~~~v~~~~~l~~a~~~m~~~-~~~~lpVv--------d~~g~lvGiit~~Dil~~~~ 129 (213)
T 1vr9_A 82 DFFVHEEDNITHALLLFLEH-QEPYLPVV--------DEEMRLKGAVSLHDFLEALI 129 (213)
T ss_dssp TCCEETTSBHHHHHHHHHHC-CCSEEEEE--------CTTCBEEEEEEHHHHHHHHH
T ss_pred CEEECCCCcHHHHHHHHHHh-CCCEEEEE--------cCCCEEEEEEEHHHHHHHHH
Confidence 89999999999999999995 67777777 77799999999999999886
No 48
>1zfj_A Inosine monophosphate dehydrogenase; IMPDH, CBS domains, oxidoreductase; HET: IMP; 1.90A {Streptococcus pyogenes} SCOP: c.1.5.1 d.37.1.1
Probab=99.48 E-value=2e-13 Score=141.18 Aligned_cols=153 Identities=14% Similarity=0.168 Sum_probs=121.8
Q ss_pred CCHHHHHHHHHccccccccccCCCC-HHHHHHHHHHhcccccccccccccCCCEEEEeCCCChhHHHHHHHHHcCCcEEE
Q psy4847 3 VHPQGLRSFIRVRDHDVTTEFNDLE-KDEVNIISGALELRRKIVGDVMTKLEDVYMLSYDAILDFETVSEIMKSGYSRIP 81 (396)
Q Consensus 3 ~~~~Elk~ll~~~~~~~~~e~~~l~-~~E~~~i~~alel~~~tV~dIMtp~~dv~~l~~d~~l~~e~i~~i~~~g~sriP 81 (396)
++++||...+..... .+.-...++ +++.++|..++. ++++|++ ++++++.++++. ++++.|.+++++++|
T Consensus 55 vt~~eLa~av~~~Gg-~G~i~~~~~~e~~~~~i~~v~~-----~~~im~~--~~~~v~~~~tv~-ea~~~m~~~~~~~~p 125 (491)
T 1zfj_A 55 VTGSKMAIAIARAGG-LGVIHKNMSITEQAEEVRKVKR-----SENGVII--DPFFLTPEHKVS-EAEELMQRYRISGVP 125 (491)
T ss_dssp TCSHHHHHHHHHTTC-EEEECCSSCHHHHHHHHHHHHH-----HTTTTSS--SCCCBCSSSBHH-HHHHHHHHTTCSEEE
T ss_pred ccHHHHHHHHHHcCC-ceEEeCCCCHHHHHHHHHHHhh-----HHhcCcC--CCeEECCCCcHH-HHHHHHHHcCCCEEE
Confidence 467788888876411 010011233 567788887765 4789997 488999999999 999999999999999
Q ss_pred EEeC-CCCcEEEEEEhhhhcccCCccccchhhhhhhhcC-CceEEcCCCCHHHHHHHHHhcCCceEEEEEEeCCCCCCCC
Q psy4847 82 VYED-RRTNIVTMFYIKDLALVDPDDNTPLKTLCQFYQN-SCYFVFEDTTLDVLLKQFKEGIKGHMAFVHRVNNEGEGDP 159 (396)
Q Consensus 82 V~~~-~~~~IVGiL~vkDLl~~~~~~~~~l~~v~~~~~~-~v~~V~~dt~L~~~L~~f~~~~~~h~avV~~~~~~~~~De 159 (396)
|+++ +.++++|+|+.+||+.... ...++.++| .+ ++++|++++++.++++.|++. +.+.++|+ |+
T Consensus 126 Vvd~~~~~~lvGivt~~Dl~~~~~-~~~~v~~im---~~~~~~~v~~~~~l~~a~~~m~~~-~~~~lpVV--------d~ 192 (491)
T 1zfj_A 126 IVETLANRKLVGIITNRDMRFISD-YNAPISEHM---TSEHLVTAAVGTDLETAERILHEH-RIEKLPLV--------DN 192 (491)
T ss_dssp EESCTTTCBEEEEEEHHHHHHCSC-SSSBTTTSC---CCSCCCCEETTCCHHHHHHHHHHT-TCSEEEEE--------CT
T ss_pred EEEeCCCCEEEEEEEHHHHhhhcc-CCCcHHHHc---CCCCCEEECCCCCHHHHHHHHHHc-CCCEEEEE--------cC
Confidence 9982 3489999999999986432 345677776 35 888999999999999999995 88889998 88
Q ss_pred CCceeeeecHHHHHHHHH
Q psy4847 160 FYETVGLITLEDVIEELI 177 (396)
Q Consensus 160 ~g~~vGIVTleDIiEeli 177 (396)
+|+++|+||.+||++.+.
T Consensus 193 ~g~lvGivt~~Dil~~~~ 210 (491)
T 1zfj_A 193 SGRLSGLITIKDIEKVIE 210 (491)
T ss_dssp TSBEEEEEEHHHHHHHHH
T ss_pred CCcEEEEEEHHHHHHHHh
Confidence 999999999999999987
No 49
>3kh5_A Protein MJ1225; AMPK, AMP, ADP, ATP, CBS domain, archaea, unknown function; HET: ADP AMP; 2.10A {Methanocaldococcus jannaschii} PDB: 3lfz_A*
Probab=99.47 E-value=3.5e-14 Score=133.52 Aligned_cols=119 Identities=18% Similarity=0.221 Sum_probs=100.4
Q ss_pred ccccccccccCCCEEEEeCCCChhHHHHHHHHHcCCcEEEEEeCCCCcEEEEEEhhhhcccCC---ccccchhhhhhhhc
Q psy4847 42 RKIVGDVMTKLEDVYMLSYDAILDFETVSEIMKSGYSRIPVYEDRRTNIVTMFYIKDLALVDP---DDNTPLKTLCQFYQ 118 (396)
Q Consensus 42 ~~tV~dIMtp~~dv~~l~~d~~l~~e~i~~i~~~g~sriPV~~~~~~~IVGiL~vkDLl~~~~---~~~~~l~~v~~~~~ 118 (396)
+.+|+++|++ ++++++.++++. ++++.|.+++++++||++++ ++++|+++.+|++.... ....++.++| .
T Consensus 83 ~~~v~~im~~--~~~~v~~~~~~~-~a~~~~~~~~~~~~~Vvd~~-~~~~Givt~~dl~~~~~~~~~~~~~v~~~m---~ 155 (280)
T 3kh5_A 83 NEPVREIMEE--NVITLKENADID-EAIETFLTKNVGGAPIVNDE-NQLISLITERDVIRALLDKIDENEVIDDYI---T 155 (280)
T ss_dssp TSBGGGTSBC--SCCCEETTCBHH-HHHHHHHHTTCSEEEEECTT-CBEEEEEEHHHHHHHHGGGSCTTCBSGGGC---B
T ss_pred hhhHHHhcCC--CCEEECCCCCHH-HHHHHHHhCCCCEEEEEcCC-CEEEEEEEHHHHHHHHhhcCCCCCCHHHHh---C
Confidence 6799999997 478999999999 99999999999999999765 89999999999975311 1122555554 5
Q ss_pred CCceEEcCCCCHHHHHHHHHhcCCceEEEEEEeCCCCCCCCCCceeeeecHHHHHHHHH
Q psy4847 119 NSCYFVFEDTTLDVLLKQFKEGIKGHMAFVHRVNNEGEGDPFYETVGLITLEDVIEELI 177 (396)
Q Consensus 119 ~~v~~V~~dt~L~~~L~~f~~~~~~h~avV~~~~~~~~~De~g~~vGIVTleDIiEeli 177 (396)
+++.++++++++.++++.|.+. +.+.++|+ + +|+++|+||.+||++.+.
T Consensus 156 ~~~~~v~~~~~l~~~~~~~~~~-~~~~~~Vv--------~-~~~~~Givt~~dl~~~~~ 204 (280)
T 3kh5_A 156 RDVIVATPGERLKDVARTMVRN-GFRRLPVV--------S-EGRLVGIITSTDFIKLLG 204 (280)
T ss_dssp CSCCCBCTTCBHHHHHHHHHHH-TCSEEEEE--------E-TTEEEEEEEHHHHHHHHT
T ss_pred CCCeEECCCCcHHHHHHHHHHc-CCCEEEEE--------E-CCEEEEEEEHHHHHHHHh
Confidence 7889999999999999999996 67777776 3 589999999999999986
No 50
>3usb_A Inosine-5'-monophosphate dehydrogenase; structural genomics, center for structural genomics of infec diseases, csgid, TIM barrel, CBS-domain; HET: MSE IMP; 2.38A {Bacillus anthracis} PDB: 3tsd_A* 3tsb_A*
Probab=99.47 E-value=2.4e-13 Score=141.55 Aligned_cols=153 Identities=14% Similarity=0.140 Sum_probs=117.8
Q ss_pred CCHHHHHHHHHccccccccccCCCC-HHHHHHHHHHhcccccccccccccCCCEEEEeCCCChhHHHHHHHHHcCCcEEE
Q psy4847 3 VHPQGLRSFIRVRDHDVTTEFNDLE-KDEVNIISGALELRRKIVGDVMTKLEDVYMLSYDAILDFETVSEIMKSGYSRIP 81 (396)
Q Consensus 3 ~~~~Elk~ll~~~~~~~~~e~~~l~-~~E~~~i~~alel~~~tV~dIMtp~~dv~~l~~d~~l~~e~i~~i~~~g~sriP 81 (396)
.+++++...+.... -++--...+. +++..++..++. ++++|++ +++++++++++. ++++.|.+++++++|
T Consensus 78 vTe~~lAia~a~~G-giGvIh~~~~~~~q~~~V~~V~~-----~~~~m~~--d~v~l~~~~tv~-ea~~~m~~~~~s~~p 148 (511)
T 3usb_A 78 VTEADMAIAMARQG-GLGIIHKNMSIEQQAEQVDKVKR-----SESGVIS--DPFFLTPEHQVY-DAEHLMGKYRISGVP 148 (511)
T ss_dssp TCSHHHHHHHHHHT-CEEEECSSSCHHHHHHHHHHHHT-----SSSCSSS--SCCCBCTTSBHH-HHHHHHHHHCCSEEE
T ss_pred hcHHHHHHHHHhcC-CceeecccCCHHHHHHHHHHhhc-----ccccccc--CCEEECCCCCHH-HHHHHHHHcCCcEEE
Confidence 45677766555431 1111112222 344556666643 5577875 478999999999 999999999999999
Q ss_pred EEeC-CCCcEEEEEEhhhhcccCCccccchhhhhhhhcC-CceEEcCCCCHHHHHHHHHhcCCceEEEEEEeCCCCCCCC
Q psy4847 82 VYED-RRTNIVTMFYIKDLALVDPDDNTPLKTLCQFYQN-SCYFVFEDTTLDVLLKQFKEGIKGHMAFVHRVNNEGEGDP 159 (396)
Q Consensus 82 V~~~-~~~~IVGiL~vkDLl~~~~~~~~~l~~v~~~~~~-~v~~V~~dt~L~~~L~~f~~~~~~h~avV~~~~~~~~~De 159 (396)
|+++ ..++++|+|+.+||+... +...+++++|. + ++++|++++++.++++.|++. +.+.++|+ |+
T Consensus 149 Vvd~g~~~~lvGiVt~rDl~~~~-~~~~~V~~vM~---~~~~vtv~~~~~l~eal~~m~~~-~i~~lpVV--------De 215 (511)
T 3usb_A 149 VVNNLDERKLVGIITNRDMRFIQ-DYSIKISDVMT---KEQLITAPVGTTLSEAEKILQKY-KIEKLPLV--------DN 215 (511)
T ss_dssp EESCTTTCBEEEEEEHHHHTTCC-CSSSBHHHHCC---CCCCCCEETTCCHHHHHHHHHHH-TCSEEEEE--------CT
T ss_pred EEecCCCCEEEEEEEehHhhhhc-cCCCcHHHhcc---cCCCEEECCCCCHHHHHHHHHHc-CCCEEEEE--------eC
Confidence 9986 138999999999998633 23457777764 5 889999999999999999995 88999999 99
Q ss_pred CCceeeeecHHHHHHHHH
Q psy4847 160 FYETVGLITLEDVIEELI 177 (396)
Q Consensus 160 ~g~~vGIVTleDIiEeli 177 (396)
+|+++|+||++||++++.
T Consensus 216 ~g~l~GiIT~~Dil~~~~ 233 (511)
T 3usb_A 216 NGVLQGLITIKDIEKVIE 233 (511)
T ss_dssp TSBEEEEEEHHHHHHHHH
T ss_pred CCCEeeeccHHHHHHhhh
Confidence 999999999999999986
No 51
>3t4n_C Nuclear protein SNF4; CBS domain, nucleotide binding, cytosol, protein binding; HET: ADP; 2.30A {Saccharomyces cerevisiae} PDB: 3tdh_C* 3te5_C* 2qlv_C
Probab=99.46 E-value=2.3e-13 Score=131.53 Aligned_cols=123 Identities=13% Similarity=0.271 Sum_probs=104.4
Q ss_pred ccccccccc---cccCCCEEEEeCCCChhHHHHHHHHHcCCcEEEEEeCCCCcEEEEEEhhhhcccCCc-----cccchh
Q psy4847 40 LRRKIVGDV---MTKLEDVYMLSYDAILDFETVSEIMKSGYSRIPVYEDRRTNIVTMFYIKDLALVDPD-----DNTPLK 111 (396)
Q Consensus 40 l~~~tV~dI---Mtp~~dv~~l~~d~~l~~e~i~~i~~~g~sriPV~~~~~~~IVGiL~vkDLl~~~~~-----~~~~l~ 111 (396)
+...+|+++ |++ ++++++.++++. ++++.|.+++++++||++++ |+++|+|+.+||+..... ...++.
T Consensus 184 ~~~~~v~~~~~~m~~--~~~~v~~~~~~~-~~~~~m~~~~~~~~pVvd~~-~~~~Giit~~dl~~~~~~~~~~~~~~~v~ 259 (323)
T 3t4n_C 184 FLKIPIGDLNIITQD--NMKSCQMTTPVI-DVIQMLTQGRVSSVPIIDEN-GYLINVYEAYDVLGLIKGGIYNDLSLSVG 259 (323)
T ss_dssp GCCSBGGGTTCSBCT--TCCCBCTTSBHH-HHHHHHHHHTCSEEEEECTT-CBEEEEEETTHHHHHHHTTHHHHTTSBHH
T ss_pred hhhCcHHHcCCCCCC--CcEEECCCCcHH-HHHHHHHHcCCCEEEEECCC-CeEEEEEeHHHHHHHHhhchhhhccCCHH
Confidence 456799999 764 478999999999 99999999999999999765 799999999999753211 134666
Q ss_pred hhhhhhcC------CceEEcCCCCHHHHHHHHHhcCCceEEEEEEeCCCCCCCCCCceeeeecHHHHHHHHHh
Q psy4847 112 TLCQFYQN------SCYFVFEDTTLDVLLKQFKEGIKGHMAFVHRVNNEGEGDPFYETVGLITLEDVIEELIQ 178 (396)
Q Consensus 112 ~v~~~~~~------~v~~V~~dt~L~~~L~~f~~~~~~h~avV~~~~~~~~~De~g~~vGIVTleDIiEeli~ 178 (396)
++|. + ++.+|.+++++.++++.|.+. +.+.++|+ |++|+++||||..||++.+++
T Consensus 260 ~~m~---~~~~~~~~~~~v~~~~~l~~~~~~m~~~-~~~~l~Vv--------d~~~~l~Giit~~Dil~~l~~ 320 (323)
T 3t4n_C 260 EALM---RRSDDFEGVYTCTKNDKLSTIMDNIRKA-RVHRFFVV--------DDVGRLVGVLTLSDILKYILL 320 (323)
T ss_dssp HHGG---GSCTTCCCCEEECTTCBHHHHHHHHHHS-CCCEEEEE--------CTTSBEEEEEEHHHHHHHHHH
T ss_pred HHHh---hccccCCCCEEECCCCCHHHHHHHHHHh-CCCEEEEE--------CCCCcEEEEEEHHHHHHHHHh
Confidence 6664 4 789999999999999999995 78888888 888999999999999999984
No 52
>4fxs_A Inosine-5'-monophosphate dehydrogenase; structural genomics, IMPDH, IMP, mycophenolic acid, MOA; HET: IMP MOA; 2.24A {Vibrio cholerae o1 biovar el tor}
Probab=99.45 E-value=2.3e-14 Score=148.83 Aligned_cols=153 Identities=12% Similarity=0.145 Sum_probs=109.1
Q ss_pred CCHHHHHHHHHccccccccccCCC-CHHHHHHHHHHhcccccccccccccCCCEEEEeCCCChhHHHHHHHHHcCCcEEE
Q psy4847 3 VHPQGLRSFIRVRDHDVTTEFNDL-EKDEVNIISGALELRRKIVGDVMTKLEDVYMLSYDAILDFETVSEIMKSGYSRIP 81 (396)
Q Consensus 3 ~~~~Elk~ll~~~~~~~~~e~~~l-~~~E~~~i~~alel~~~tV~dIMtp~~dv~~l~~d~~l~~e~i~~i~~~g~sriP 81 (396)
+|++++...+.... -++--...+ .+++..++.++ ++++++|++ +++++++++++. ++++.|.+++++++|
T Consensus 54 VTe~~ma~a~a~~G-GiGvI~~n~s~e~qa~~V~~V-----k~~~~~m~~--d~v~v~~~~tv~-ea~~~m~~~~~s~~P 124 (496)
T 4fxs_A 54 VTEARLAIALAQEG-GIGFIHKNMSIEQQAAQVHQV-----KIFEAGVVT--HPVTVRPEQTIA-DVMELTHYHGFAGFP 124 (496)
T ss_dssp TCSHHHHHHHHHHT-CEEEECSSSCHHHHHHHHHHH-----HHCCC--CB--CCCCBCSSSBHH-HHHHHHTSSCCCEEE
T ss_pred hhHHHHHHHHHHcC-CcceecCCCCHHHHHHHHHhc-----ccccccccc--CceEECCCCCHH-HHHHHHHHcCCcEEE
Confidence 56788887776641 111111122 55678888887 567899994 588999999999 999999999999999
Q ss_pred EEeCCCCcEEEEEEhhhhcccCCccccchhhhhhhhcC-CceEEcCCCCHHHHHHHHHhcCCceEEEEEEeCCCCCCCCC
Q psy4847 82 VYEDRRTNIVTMFYIKDLALVDPDDNTPLKTLCQFYQN-SCYFVFEDTTLDVLLKQFKEGIKGHMAFVHRVNNEGEGDPF 160 (396)
Q Consensus 82 V~~~~~~~IVGiL~vkDLl~~~~~~~~~l~~v~~~~~~-~v~~V~~dt~L~~~L~~f~~~~~~h~avV~~~~~~~~~De~ 160 (396)
|++++ ++++|+|+.+||++... ...++.++|.. + +++++++++++.++++.|+++ +.+.++|+ |++
T Consensus 125 Vvd~~-~~lvGiVt~rDL~~~~~-~~~~v~diM~p--~~~~vtv~~~~~l~ea~~~m~~~-~i~~lpVV--------De~ 191 (496)
T 4fxs_A 125 VVTEN-NELVGIITGRDVRFVTD-LTKSVAAVMTP--KERLATVKEGATGAEVQEKMHKA-RVEKILVV--------NDE 191 (496)
T ss_dssp EECSS-SBEEEEEEHHHHTTCCC-TTSBGGGTSEE--GGGCCEEECC----CGGGTCC----CCCEEEE--------CTT
T ss_pred EEccC-CEEEEEEEHHHHhhccc-CCCcHHHHhcC--CCCCEEECCCCCHHHHHHHHHHc-CCCEEEEE--------cCC
Confidence 99875 89999999999985432 34577777631 2 588999999999999999995 88999999 999
Q ss_pred CceeeeecHHHHHHHHH
Q psy4847 161 YETVGLITLEDVIEELI 177 (396)
Q Consensus 161 g~~vGIVTleDIiEeli 177 (396)
|+++|+||++||++...
T Consensus 192 G~l~GiIT~~DIl~~~~ 208 (496)
T 4fxs_A 192 FQLKGMITAKDFHKAES 208 (496)
T ss_dssp SBCCEEECCC-----CC
T ss_pred CCEEEeehHhHHHHhhc
Confidence 99999999999998753
No 53
>3ddj_A CBS domain-containing protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: AMP; 1.80A {Sulfolobus solfataricus} SCOP: d.37.1.1 d.37.1.1
Probab=99.45 E-value=8.4e-14 Score=132.97 Aligned_cols=126 Identities=15% Similarity=0.141 Sum_probs=105.8
Q ss_pred ccccccccccccCCCEEEEeCCCChhHHHHHHHHHcCCcEEEEEeCCCCcEEEEEEhhhhcccCC----------ccccc
Q psy4847 40 LRRKIVGDVMTKLEDVYMLSYDAILDFETVSEIMKSGYSRIPVYEDRRTNIVTMFYIKDLALVDP----------DDNTP 109 (396)
Q Consensus 40 l~~~tV~dIMtp~~dv~~l~~d~~l~~e~i~~i~~~g~sriPV~~~~~~~IVGiL~vkDLl~~~~----------~~~~~ 109 (396)
....+|+++|++. +.+++.++++. ++++.|.+++++++||++++ ++++|+|+.+||+.... ....+
T Consensus 153 ~~~~~v~~~m~~~--~~~v~~~~~l~-~~~~~m~~~~~~~~~Vvd~~-~~~~Givt~~dl~~~~~~~~~~~~~~~~~~~~ 228 (296)
T 3ddj_A 153 DEIFPVKVFMSTK--VQTIYKEVRLD-QAVKLMLRRGFRRLPVIDDD-NKVVGIVTVVNAIKQLAKAVDKLDPDYFYGKV 228 (296)
T ss_dssp CCCCBHHHHSBCS--CCCEETTSBHH-HHHHHHHHHTCSEEEEECTT-SCEEEEEEHHHHHHHHHHHHHHTCTHHHHTCB
T ss_pred cccccHHHhhcCC--CeEECCCCCHH-HHHHHHHHcCCCEEEEEcCC-CEEEEEEEHHHHHHHHHHHHhhcChhhhcCcC
Confidence 4567999999854 78999999999 99999999999999999765 89999999999975321 01235
Q ss_pred hhhhhhhhcCCceEEcCCCCHHHHHHHHHhcCCceEEEEEEeCCCCCCCCCCceeeeecHHHHHHHHHhcccc
Q psy4847 110 LKTLCQFYQNSCYFVFEDTTLDVLLKQFKEGIKGHMAFVHRVNNEGEGDPFYETVGLITLEDVIEELIQAEIM 182 (396)
Q Consensus 110 l~~v~~~~~~~v~~V~~dt~L~~~L~~f~~~~~~h~avV~~~~~~~~~De~g~~vGIVTleDIiEeli~~eI~ 182 (396)
+.++| .+++.+|.+++++.++++.|.+. +.+.++|+ |++|+++||||..||++++. +++.
T Consensus 229 v~~~m---~~~~~~v~~~~~l~~a~~~m~~~-~~~~l~Vv--------d~~g~~~Giit~~Dil~~l~-~~~~ 288 (296)
T 3ddj_A 229 VKDVM---VTNLVTIDELASVNRAAAEMIVK-RIGSLLIL--------NKDNTIRGIITERDLLIALH-HILV 288 (296)
T ss_dssp HHHHS---BCCCCBCCTTSBHHHHHHHHHHH-TCSEEEEE--------CTTSCEEEEEEHHHHHHHHH-HHHH
T ss_pred HHHHh---CCCCeEECCCCcHHHHHHHHHHc-CCCEEEEE--------CCCCeEEEEEcHHHHHHHHH-HHhc
Confidence 56655 57889999999999999999995 78888888 88899999999999999998 4544
No 54
>3kh5_A Protein MJ1225; AMPK, AMP, ADP, ATP, CBS domain, archaea, unknown function; HET: ADP AMP; 2.10A {Methanocaldococcus jannaschii} PDB: 3lfz_A*
Probab=99.44 E-value=5.5e-13 Score=125.30 Aligned_cols=119 Identities=18% Similarity=0.253 Sum_probs=98.3
Q ss_pred cccc-ccccCCCEEEEeCCCChhHHHHHHHHHcCCcEEEEEeCCCCcEEEEEEhhhhcccCCcc----------------
Q psy4847 44 IVGD-VMTKLEDVYMLSYDAILDFETVSEIMKSGYSRIPVYEDRRTNIVTMFYIKDLALVDPDD---------------- 106 (396)
Q Consensus 44 tV~d-IMtp~~dv~~l~~d~~l~~e~i~~i~~~g~sriPV~~~~~~~IVGiL~vkDLl~~~~~~---------------- 106 (396)
+|++ +|++ ++++++.++++. ++++.|.+++++++||++++.++++|+++.+||+......
T Consensus 4 ~v~~~i~~~--~~~~v~~~~sl~-~a~~~m~~~~~~~lpV~d~~~~~~~Givt~~di~~~~~~~~~~~~~~~~~~~~~~~ 80 (280)
T 3kh5_A 4 RVMKIAQNK--KIVTVYPTTTIR-KALMTMNENKYRRLPVVNAGNNKVVGIITSMDIVDFMGGGSKYNLIREKHERNFLA 80 (280)
T ss_dssp BGGGTSCCS--CCCCBCTTSBHH-HHHHHHHHHCCCEEEEECTTTCBEEEEEEHHHHHHHTTTSGGGHHHHTTSTTCHHH
T ss_pred hHHHHhcCC--CcEEECCCCcHH-HHHHHHHhCCCcEeeEEECCCCeEEEEEEHHHHHHHhcccchhhhhhhccccchhH
Confidence 3444 5554 589999999999 9999999999999999986458999999999997532110
Q ss_pred --ccchhhhhhhhcCCceEEcCCCCHHHHHHHHHhcCCceEEEEEEeCCCCCCCCCCceeeeecHHHHHHHHH
Q psy4847 107 --NTPLKTLCQFYQNSCYFVFEDTTLDVLLKQFKEGIKGHMAFVHRVNNEGEGDPFYETVGLITLEDVIEELI 177 (396)
Q Consensus 107 --~~~l~~v~~~~~~~v~~V~~dt~L~~~L~~f~~~~~~h~avV~~~~~~~~~De~g~~vGIVTleDIiEeli 177 (396)
..+++++| .+++.+|++++++.++++.|.+. +.+.++|+ |+.|+++||||.+|+++.+.
T Consensus 81 ~~~~~v~~im---~~~~~~v~~~~~~~~a~~~~~~~-~~~~~~Vv--------d~~~~~~Givt~~dl~~~~~ 141 (280)
T 3kh5_A 81 AINEPVREIM---EENVITLKENADIDEAIETFLTK-NVGGAPIV--------NDENQLISLITERDVIRALL 141 (280)
T ss_dssp HTTSBGGGTS---BCSCCCEETTCBHHHHHHHHHHT-TCSEEEEE--------CTTCBEEEEEEHHHHHHHHG
T ss_pred HhhhhHHHhc---CCCCEEECCCCCHHHHHHHHHhC-CCCEEEEE--------cCCCEEEEEEEHHHHHHHHh
Confidence 12445554 57889999999999999999985 77888888 88899999999999999886
No 55
>3pc3_A CG1753, isoform A; CBS, synthase, PLP, heme, aminoacrylate, lyase; HET: HEM P1T; 1.55A {Drosophila melanogaster} PDB: 3pc2_A* 3pc4_A*
Probab=99.43 E-value=2.4e-13 Score=141.87 Aligned_cols=122 Identities=12% Similarity=0.110 Sum_probs=100.7
Q ss_pred ccccccccccccCCCEEEEeCC-CChhHHHHHHHHHcCCcEEEEEeCCCCcEEEEEEhhhhccc----CCccccchhhhh
Q psy4847 40 LRRKIVGDVMTKLEDVYMLSYD-AILDFETVSEIMKSGYSRIPVYEDRRTNIVTMFYIKDLALV----DPDDNTPLKTLC 114 (396)
Q Consensus 40 l~~~tV~dIMtp~~dv~~l~~d-~~l~~e~i~~i~~~g~sriPV~~~~~~~IVGiL~vkDLl~~----~~~~~~~l~~v~ 114 (396)
|.+.+|+++|++. +++++.+ +++. ++++.|.+++++++||++++.++++|+|+.+||+.. ......++.++|
T Consensus 381 l~~~~V~diM~~~--~vtv~~~~~tv~-ea~~~m~~~~~~~lpVvd~~~g~lvGiVt~~Dll~~l~~~~~~~~~~V~~im 457 (527)
T 3pc3_A 381 WWSLAIAELELPA--PPVILKSDATVG-EAIALMKKHRVDQLPVVDQDDGSVLGVVGQETLITQIVSMNRQQSDPAIKAL 457 (527)
T ss_dssp TTTSBGGGGCCCC--CSCCEETTCBHH-HHHHHHHHHTCSEEEEECTTTCCEEEEEEHHHHHHHHHHHCCCTTSBGGGGE
T ss_pred ccCCcHHHhCcCC--CeEEcCCCCcHH-HHHHHHHHcCCCeEEEEECCCCEEEEEEEHHHHHHHHHhccCcCCCcHHHHh
Confidence 3468999999954 7889999 9999 999999999999999998334899999999999742 112234666665
Q ss_pred hhhcCCceEEcCCCCHHHHHHHHHhcCCceEEEEEEeCCCCCCCC----CCceeeeecHHHHHHHHHh
Q psy4847 115 QFYQNSCYFVFEDTTLDVLLKQFKEGIKGHMAFVHRVNNEGEGDP----FYETVGLITLEDVIEELIQ 178 (396)
Q Consensus 115 ~~~~~~v~~V~~dt~L~~~L~~f~~~~~~h~avV~~~~~~~~~De----~g~~vGIVTleDIiEeli~ 178 (396)
.+++++|.+++++.++++.|.+. ++++|+ |+ +|+++||||..||++.+.+
T Consensus 458 ---~~~~~~v~~~~~l~~a~~~m~~~---~~~pVV--------d~~~~~~g~lvGIVT~~Dll~~l~~ 511 (527)
T 3pc3_A 458 ---NKRVIRLNESEILGKLARVLEVD---PSVLIL--------GKNPAGKVELKALATKLDVTTFIAA 511 (527)
T ss_dssp ---ETTCCEEETTSBHHHHHHHHTTC---SEEEEE--------EECSSSCEEEEEEEEHHHHHHHHHT
T ss_pred ---cCCCeEECCCCcHHHHHHHHhhC---CEEEEE--------eCCcccCCeEEEEEEHHHHHHHHHh
Confidence 48899999999999999999763 456777 55 5899999999999999973
No 56
>3org_A CMCLC; transporter, transport protein; 3.50A {Cyanidioschyzon merolae}
Probab=99.43 E-value=2.4e-14 Score=152.70 Aligned_cols=125 Identities=16% Similarity=0.051 Sum_probs=102.1
Q ss_pred cccccccccccCCCEEEEeCCCChhHHHHHHHH-HcCCcEEEEEeCCCCcEEEEEEhhhhcccCCcc----cc-------
Q psy4847 41 RRKIVGDVMTKLEDVYMLSYDAILDFETVSEIM-KSGYSRIPVYEDRRTNIVTMFYIKDLALVDPDD----NT------- 108 (396)
Q Consensus 41 ~~~tV~dIMtp~~dv~~l~~d~~l~~e~i~~i~-~~g~sriPV~~~~~~~IVGiL~vkDLl~~~~~~----~~------- 108 (396)
.+.+|+|+|+|++++.++++++++. ++.+.|. +++++++||+|++ ++++|+|+.+||+...... ..
T Consensus 451 ~~~~V~diM~p~~~v~~v~~~~t~~-e~~~~~~~~~~~~~~PVvd~~-~~lvGiVt~~DL~~~l~~~~~~~~~~~~~~~~ 528 (632)
T 3org_A 451 PEMTAREIMHPIEGEPHLFPDSEPQ-HIKGILEKFPNRLVFPVIDAN-GYLLGAISRKEIVDRLQHVLEDVPEPIAGHRT 528 (632)
T ss_dssp TTSBHHHHCBCTTTSCCBCSSSCHH-HHHHHHHHSTTCCEECBBCTT-CBBCCEESHHHHTTTTTTC-------------
T ss_pred ccCcHHHHhhcCCCceEecCCCcHH-HHHHHHHhcCCcceEEEEecC-CeEEEEEEHHHHHHHHHHHhhhcccccccccc
Confidence 6789999999988899999999999 9999999 7999999999864 8999999999997532110 00
Q ss_pred -------------------------------------chhhhhhhhcCCceEEcCCCCHHHHHHHHHhcCCceEEEEEEe
Q psy4847 109 -------------------------------------PLKTLCQFYQNSCYFVFEDTTLDVLLKQFKEGIKGHMAFVHRV 151 (396)
Q Consensus 109 -------------------------------------~l~~v~~~~~~~v~~V~~dt~L~~~L~~f~~~~~~h~avV~~~ 151 (396)
+...+.++|.+++.+|++++++.++++.|.++ +.|.++|+
T Consensus 529 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~v~~iMt~~pitV~~~~~l~ea~~~M~~~-~i~~lpVv-- 605 (632)
T 3org_A 529 LVLLDAADLSENIEGLVDETPSGEHSSKGKRTATVLEPTSSLVVPCDVSPIVVTSYSLVRQLHFLFVML-MPSMIYVT-- 605 (632)
T ss_dssp ------------------------------------------CCSCCCCCCEEETTCBHHHHHHHHHHT-CCSEEEEE--
T ss_pred eeccCHHHHHhhcccCCCCCcccchhhhcccceEeeccccccchhhcCCCceecCCCcHHHHHHHHHhc-CCCEEEEE--
Confidence 00014445678899999999999999999995 78888887
Q ss_pred CCCCCCCCCCceeeeecHHHHHHHHH
Q psy4847 152 NNEGEGDPFYETVGLITLEDVIEELI 177 (396)
Q Consensus 152 ~~~~~~De~g~~vGIVTleDIiEeli 177 (396)
++|+++||||++||++++.
T Consensus 606 -------e~G~lvGIVT~~Dll~~~~ 624 (632)
T 3org_A 606 -------ERGKLVGIVEREDVAYGYS 624 (632)
T ss_dssp -------ETTEEEEEEEGGGTEECCC
T ss_pred -------ECCEEEEEEehhhHHHHHh
Confidence 3589999999999977653
No 57
>2yzq_A Putative uncharacterized protein PH1780; sheet/helix/sheet/sheet/helix, structural genomics, unknown function, NPPSFA; HET: SAM; 1.63A {Pyrococcus horikoshii} SCOP: d.37.1.1 d.37.1.1
Probab=99.40 E-value=3.8e-13 Score=126.93 Aligned_cols=117 Identities=21% Similarity=0.205 Sum_probs=83.2
Q ss_pred cccccccccCCCEEEEeCCCChhHHHHHHHHHcCCcEEEEEeCCCCcEEEEEEhhhhcccCCccccchhhhhhhhcCCce
Q psy4847 43 KIVGDVMTKLEDVYMLSYDAILDFETVSEIMKSGYSRIPVYEDRRTNIVTMFYIKDLALVDPDDNTPLKTLCQFYQNSCY 122 (396)
Q Consensus 43 ~tV~dIMtp~~dv~~l~~d~~l~~e~i~~i~~~g~sriPV~~~~~~~IVGiL~vkDLl~~~~~~~~~l~~v~~~~~~~v~ 122 (396)
++|+++|++. +++++.++++. ++++.|.+++++++||++++ ++++|+++.+||+.... ..+++++| .++++
T Consensus 1 m~v~~im~~~--~~~v~~~~~~~-~a~~~~~~~~~~~~pV~d~~-~~~~Giv~~~dl~~~~~--~~~v~~~m---~~~~~ 71 (282)
T 2yzq_A 1 MRVKTIMTQN--PVTITLPATRN-YALELFKKYKVRSFPVVNKE-GKLVGIISVKRILVNPD--EEQLAMLV---KRDVP 71 (282)
T ss_dssp CBHHHHSEES--CCCEESSCC-------------CCEEEEECTT-CCEEEEEESSCC------------CCC---BSCCC
T ss_pred CchHHhccCC--CeEECCCCcHH-HHHHHHHHcCCCeEEEEcCC-CcEEEEEEHHHHHhhhc--cCCHHHHc---CCCCc
Confidence 3689999954 88999999999 99999999999999999864 89999999999985432 23566665 46788
Q ss_pred EEcCCCCHHHHHHHHHhcCCceEEEEEEeCCCCCCCCCCceeeeecHHHHHH-HHH
Q psy4847 123 FVFEDTTLDVLLKQFKEGIKGHMAFVHRVNNEGEGDPFYETVGLITLEDVIE-ELI 177 (396)
Q Consensus 123 ~V~~dt~L~~~L~~f~~~~~~h~avV~~~~~~~~~De~g~~vGIVTleDIiE-eli 177 (396)
++++++++.++++.|.+. +.+.++|+ |+.|+++|+||.+|+++ .+.
T Consensus 72 ~v~~~~~l~~a~~~m~~~-~~~~~~Vv--------d~~~~~~Giit~~di~~~~~~ 118 (282)
T 2yzq_A 72 VVKENDTLKKAAKLMLEY-DYRRVVVV--------DSKGKPVGILTVGDIIRRYFA 118 (282)
T ss_dssp EEETTSBHHHHHHHHHHH-TCSEEEEE--------CTTSCEEEEEEHHHHHHHTTT
T ss_pred EECCCCcHHHHHHHHHHc-CCCEEEEE--------cCCCEEEEEEEHHHHHHHHHh
Confidence 999999999999999985 67778888 77799999999999999 665
No 58
>1me8_A Inosine-5'-monophosphate dehydrogenase; alpha beta barrel, oxidoreductase; HET: RVP; 1.90A {Tritrichomonas foetus} SCOP: c.1.5.1 PDB: 1ak5_A* 1me7_A* 1me9_A* 1meh_A* 1mei_A* 1mew_A* 1pvn_A* 1lrt_A*
Probab=99.37 E-value=1.1e-13 Score=143.99 Aligned_cols=154 Identities=10% Similarity=0.045 Sum_probs=18.8
Q ss_pred CCHHHHHHHHHccccccccccCCCC-HHHHHHHHHHhcccccccccc-cccCCCEEEEeCCCChhHHHHHHHHHcCCcEE
Q psy4847 3 VHPQGLRSFIRVRDHDVTTEFNDLE-KDEVNIISGALELRRKIVGDV-MTKLEDVYMLSYDAILDFETVSEIMKSGYSRI 80 (396)
Q Consensus 3 ~~~~Elk~ll~~~~~~~~~e~~~l~-~~E~~~i~~alel~~~tV~dI-Mtp~~dv~~l~~d~~l~~e~i~~i~~~g~sri 80 (396)
++++++...+..... ++--...++ +++..++.++.. .++ |++ +++++++++++. ++++.|.+++++++
T Consensus 62 vt~~~la~~la~~gg-~G~I~~~~~~e~~~~~v~~V~~------~e~gM~~--~~~~v~~~~tv~-eal~~m~~~~~s~~ 131 (503)
T 1me8_A 62 VSGEKMAIALAREGG-ISFIFGSQSIESQAAMVHAVKN------FKAGFVV--SDSNVKPDQTFA-DVLAISQRTTHNTV 131 (503)
T ss_dssp TCSHHHHHHHHHTTC-EEEECCSSCHHHHHHHHHHHHT------TTC---------------------------------
T ss_pred hhHHHHHHHHHhCCC-cceeeCCCCHHHHHHHHhhhhh------cccCccc--CCeEECCCCcHH-HHHHHHHHcCceEE
Confidence 466788777766310 000011233 455666665543 455 987 589999999999 99999999999999
Q ss_pred EEEeCC--CCcEEEEEEhhhhcccCCccccchhhhhhhhcCC--ceEEcCCCCHHHHHHHHHhcCCceEEEEEEeCCCCC
Q psy4847 81 PVYEDR--RTNIVTMFYIKDLALVDPDDNTPLKTLCQFYQNS--CYFVFEDTTLDVLLKQFKEGIKGHMAFVHRVNNEGE 156 (396)
Q Consensus 81 PV~~~~--~~~IVGiL~vkDLl~~~~~~~~~l~~v~~~~~~~--v~~V~~dt~L~~~L~~f~~~~~~h~avV~~~~~~~~ 156 (396)
||++++ .++++|+|+.+||+........+++++|. ++ +++|++++++.++++.|.+. +.+.++|+
T Consensus 132 pVvd~~~~~g~lvGiVt~~Dl~~~~~~~~~~V~diM~---~~~~~~tv~~~~sl~ea~~~m~~~-~i~~lpVV------- 200 (503)
T 1me8_A 132 AVTDDGTPHGVLLGLVTQRDYPIDLTQTETKVSDMMT---PFSKLVTAHQDTKLSEANKIIWEK-KLNALPII------- 200 (503)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred EEEECCCcCCeEEEEEEHHHHHhhhccccCcHHHHhC---CCCCCEEEcCCCcHHHHHHHHHHc-CCCEEEEE-------
Confidence 999764 37899999999998632222346777764 55 88999999999999999995 88999998
Q ss_pred CCCCCceeeeecHHHHHHHHHh
Q psy4847 157 GDPFYETVGLITLEDVIEELIQ 178 (396)
Q Consensus 157 ~De~g~~vGIVTleDIiEeli~ 178 (396)
|++|+++||||.+||++.+..
T Consensus 201 -De~g~lvGiIT~~Dil~~~~~ 221 (503)
T 1me8_A 201 -DDDQHLRYIVFRKDYDRSQVC 221 (503)
T ss_dssp ----------------------
T ss_pred -cCCCeEEEEEEecHHHHhhhc
Confidence 889999999999999999873
No 59
>3l2b_A Probable manganase-dependent inorganic pyrophosphatase; family II, CBS domain, bateman domain, AP4A, diadenosine polyphosphate, DRTGG; HET: B4P; 2.27A {Clostridium perfringens} PDB: 3l31_A*
Probab=99.36 E-value=8.5e-13 Score=123.33 Aligned_cols=122 Identities=16% Similarity=0.115 Sum_probs=93.6
Q ss_pred ccccccccccCCCEEEEeCCCChhHHHHHHHHHcCCcEEEEEeCCCCcEEEEEEhhhhccc--CCccc-------c----
Q psy4847 42 RKIVGDVMTKLEDVYMLSYDAILDFETVSEIMKSGYSRIPVYEDRRTNIVTMFYIKDLALV--DPDDN-------T---- 108 (396)
Q Consensus 42 ~~tV~dIMtp~~dv~~l~~d~~l~~e~i~~i~~~g~sriPV~~~~~~~IVGiL~vkDLl~~--~~~~~-------~---- 108 (396)
..+|+|+|++. +.++++++++. ++++.|.+++++++||++++ ++++|+|+.+||+.. ...+. +
T Consensus 6 ~~~v~~im~~~--~~~v~~~~~~~-~a~~~m~~~~~~~lpVvd~~-~~l~Giit~~di~~~~~~~~~~~~~~~~~~~~~~ 81 (245)
T 3l2b_A 6 KLKVEDLEMDK--IAPLAPEVSLK-MAWNIMRDKNLKSIPVADGN-NHLLGMLSTSNITATYMDIWDSNILAKSATSLDN 81 (245)
T ss_dssp CCBGGGSCCBC--CCCBCTTCBHH-HHHHHHHHTTCSEEEEECTT-CBEEEEEEHHHHHHHHHCCCCTTHHHHTTCCHHH
T ss_pred cCcHHHhcCCC--CcEECCCCcHH-HHHHHHHHcCCCEEEEEcCC-CEEEEEEEHHHHHHHHHHhhhhhhhhhccCCHHH
Confidence 56899999864 78999999999 99999999999999999865 899999999999642 10000 0
Q ss_pred --------------------------------------------------------------------------------
Q psy4847 109 -------------------------------------------------------------------------------- 108 (396)
Q Consensus 109 -------------------------------------------------------------------------------- 108 (396)
T Consensus 82 v~~~l~~~~l~~~~~~~~~~g~~~i~a~~~~~~~~~~~~~~ivIvgdr~~~~~~~i~~~~~~liit~~~~~~~~v~~~a~ 161 (245)
T 3l2b_A 82 ILDTLSAEAQNINEERKVFPGKVVVAAMQAESLKEFISEGDIAIAGDRAEIQAELIELKVSLLIVTGGHTPSKEIIELAK 161 (245)
T ss_dssp HHHHTTCEEEECCTTCCCCCSCEEECCSCGGGGGGTCCTTCEEEECSCHHHHHHHHHTTCSEEEECTTCCCCHHHHHHHH
T ss_pred HHHHhCCEEEeccCCcceeeeeEEEEeCChHHHHhcCCCCCEEEECCCHHHHHHHHHcCCCEEEECCCCCCCHHHHHHHH
Confidence
Q ss_pred ---------------------chhhhhhhhc-CCceEEcCCCCHHHHHHHHHhcCCceEEEEEEeCCCCCCCCCCceeee
Q psy4847 109 ---------------------PLKTLCQFYQ-NSCYFVFEDTTLDVLLKQFKEGIKGHMAFVHRVNNEGEGDPFYETVGL 166 (396)
Q Consensus 109 ---------------------~l~~v~~~~~-~~v~~V~~dt~L~~~L~~f~~~~~~h~avV~~~~~~~~~De~g~~vGI 166 (396)
.-..+.++|. +++.++.+++++.++++.|.+. +.+.++|+ |+.|+++||
T Consensus 162 ~~~~~~i~t~~d~~~~~~~~~~~~~v~~im~~~~~~~~~~~~~~~~~~~~m~~~-~~~~~pVv--------d~~~~~~Gi 232 (245)
T 3l2b_A 162 KNNITVITTPHDSFTASRLIVQSLPVDYVMTKDNLVAVSTDDLVEDVKVTMSET-RYSNYPVI--------DENNKVVGS 232 (245)
T ss_dssp HHTCEEEECSSCHHHHHHHGGGGSBHHHHSBCTTCCCEETTSBHHHHHHHHHHH-CCSEEEEE--------CTTCBEEEE
T ss_pred HcCCeEEEeCCChHHHHHHHhcCCceeeEecCCccEEECCCCcHHHHHHHHHhc-CCceEEEE--------cCCCeEEEE
Confidence 0012344455 7889999999999999999996 67777777 888999999
Q ss_pred ecHHHHHHHH
Q psy4847 167 ITLEDVIEEL 176 (396)
Q Consensus 167 VTleDIiEel 176 (396)
||..|++...
T Consensus 233 it~~dll~~~ 242 (245)
T 3l2b_A 233 IARFHLISTH 242 (245)
T ss_dssp EECC------
T ss_pred EEHHHhhchh
Confidence 9999998764
No 60
>2cu0_A Inosine-5'-monophosphate dehydrogenase; structural genomics, pyrococcus horikoshii OT3, riken structural genomics/PROT initiative, RSGI; HET: XMP; 2.10A {Pyrococcus horikoshii} SCOP: c.1.5.1
Probab=99.34 E-value=1.8e-13 Score=141.60 Aligned_cols=149 Identities=21% Similarity=0.252 Sum_probs=21.9
Q ss_pred CCHHHHHHHHHccccccccccCCCC-HHHHHHHHHHhcccccccccccccCCCEEEEeCCCChhHHHHHHHHHcCCcEEE
Q psy4847 3 VHPQGLRSFIRVRDHDVTTEFNDLE-KDEVNIISGALELRRKIVGDVMTKLEDVYMLSYDAILDFETVSEIMKSGYSRIP 81 (396)
Q Consensus 3 ~~~~Elk~ll~~~~~~~~~e~~~l~-~~E~~~i~~alel~~~tV~dIMtp~~dv~~l~~d~~l~~e~i~~i~~~g~sriP 81 (396)
.++.|+...+.... ..+.-...++ +++..+|.+++.+. ++|++ ++++++.++++. ++++.|.+++++++|
T Consensus 58 vt~~ela~ava~~G-glG~i~~~~~~e~~~~~I~~v~~~~-----~~m~~--~~~~v~~~~tv~-ea~~~~~~~~~~~~p 128 (486)
T 2cu0_A 58 VTEWEMAVAMAREG-GLGVIHRNMGIEEQVEQVKRVKRAE-----RLIVE--DVITIAPDETVD-FALFLMEKHGIDGLP 128 (486)
T ss_dssp TCSHHHHHHHHHTT-CEEEECSSSCHHHHHHHHHHHHTCC----------------------------------------
T ss_pred ecHHHHHHHHHhcC-CceeecCCCCHHHHHHHHHhhcchh-----hcccc--CceEECCCCCHH-HHHHHHHHcCCcEEE
Confidence 46778877776531 1110111133 56788999997764 47884 589999999999 999999999999999
Q ss_pred EEeCCCCcEEEEEEhhhhcccCCccccchhhhhhhhcCCceEEcCCCCHHHHHHHHHhcCCceEEEEEEeCCCCCCCCCC
Q psy4847 82 VYEDRRTNIVTMFYIKDLALVDPDDNTPLKTLCQFYQNSCYFVFEDTTLDVLLKQFKEGIKGHMAFVHRVNNEGEGDPFY 161 (396)
Q Consensus 82 V~~~~~~~IVGiL~vkDLl~~~~~~~~~l~~v~~~~~~~v~~V~~dt~L~~~L~~f~~~~~~h~avV~~~~~~~~~De~g 161 (396)
|+++ ++++|+|+.+||+. + ...++.++| .+++++|++++++.++++.|++. +.+.++|+ |++|
T Consensus 129 Vvd~--~~lvGivt~~Dl~~-~--~~~~v~~im---~~~~~~v~~~~~l~eal~~m~~~-~~~~lpVV--------de~g 191 (486)
T 2cu0_A 129 VVED--EKVVGIITKKDIAA-R--EGKLVKELM---TKEVITVPESIEVEEALKIMIEN-RIDRLPVV--------DERG 191 (486)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred EEEC--CEEEEEEEHHHhcc-C--CCCCHHHHc---cCCCeEECCcCcHHHHHHHHHHc-CCCEEEEE--------ecCC
Confidence 9976 79999999999986 2 334666665 46888999999999999999995 88899998 8899
Q ss_pred ceeeeecHHHHHHHHH
Q psy4847 162 ETVGLITLEDVIEELI 177 (396)
Q Consensus 162 ~~vGIVTleDIiEeli 177 (396)
+++||||.+||++++.
T Consensus 192 ~lvGiiT~~Dil~~~~ 207 (486)
T 2cu0_A 192 KLVGLITMSDLVARKK 207 (486)
T ss_dssp ---------------C
T ss_pred eEEEEEEHHHHHHhhh
Confidence 9999999999999863
No 61
>2qrd_G Protein C1556.08C; AMPK, ADP, ATP-binding, kinase, nucleotide-binding, serine/T protein kinase, transferase, CBS domain; HET: ADP ATP; 2.41A {Schizosaccharomyces pombe} PDB: 2qrc_G* 2qr1_G* 2qre_G* 2oox_G* 2ooy_G*
Probab=99.33 E-value=6.1e-12 Score=122.02 Aligned_cols=122 Identities=14% Similarity=0.219 Sum_probs=101.2
Q ss_pred ccccccc---ccccCCCEEEEeCCCChhHHHHHHHHHcCCcEEEEEeCCCCcEEEEEEhhhhcccCCc-----cccchhh
Q psy4847 41 RRKIVGD---VMTKLEDVYMLSYDAILDFETVSEIMKSGYSRIPVYEDRRTNIVTMFYIKDLALVDPD-----DNTPLKT 112 (396)
Q Consensus 41 ~~~tV~d---IMtp~~dv~~l~~d~~l~~e~i~~i~~~g~sriPV~~~~~~~IVGiL~vkDLl~~~~~-----~~~~l~~ 112 (396)
...+|++ +|++ ++.+++.++++. ++++.|.+++++++||++++ ++++|+|+.+||+..... ...++.+
T Consensus 180 ~~~~v~~l~~~m~~--~~~~v~~~~~~~-~~~~~m~~~~~~~~~Vvd~~-~~~~Giit~~dl~~~~~~~~~~~~~~~v~~ 255 (334)
T 2qrd_G 180 LRVPLNQMTIGTWS--NLATASMETKVY-DVIKMLAEKNISAVPIVNSE-GTLLNVYESVDVMHLIQDGDYSNLDLSVGE 255 (334)
T ss_dssp CCCBGGGSSCSBCS--SCCCBCTTSBHH-HHHHHHHHHTCSEEEEECTT-CBEEEEEETHHHHHHHTTSCGGGGGSBHHH
T ss_pred hhCcHHHhCCcccC--CceEECCCCcHH-HHHHHHHHcCCcEEEEEcCC-CcEEEEEEHHHHHHHhhccccccccCcHHH
Confidence 3578999 4874 478899999999 99999999999999999765 799999999999753111 1245555
Q ss_pred hhhhhc-----CCceEEcCCCCHHHHHHHHHhcCCceEEEEEEeCCCCCCCCCCceeeeecHHHHHHHHH
Q psy4847 113 LCQFYQ-----NSCYFVFEDTTLDVLLKQFKEGIKGHMAFVHRVNNEGEGDPFYETVGLITLEDVIEELI 177 (396)
Q Consensus 113 v~~~~~-----~~v~~V~~dt~L~~~L~~f~~~~~~h~avV~~~~~~~~~De~g~~vGIVTleDIiEeli 177 (396)
+|. . +++++|.+++++.++++.|.+. +.+.++|+ |++|+++||||..||++.+.
T Consensus 256 ~m~--~~~~~~~~~~~v~~~~~l~~~~~~m~~~-~~~~l~Vv--------d~~g~l~Giit~~dil~~~~ 314 (334)
T 2qrd_G 256 ALL--KRPANFDGVHTCRATDRLDGIFDAIKHS-RVHRLFVV--------DENLKLEGILSLADILNYII 314 (334)
T ss_dssp HHT--TCCTTCCCCCEECTTCBHHHHHHHHHHS-CCCEEEEE--------CTTCBEEEEEEHHHHHHHHH
T ss_pred HHh--cccccCCCCEEECCCCcHHHHHHHHHHc-CCCEEEEE--------CCCCeEEEEEeHHHHHHHHH
Confidence 553 1 3789999999999999999995 78888888 88899999999999999997
No 62
>2yzq_A Putative uncharacterized protein PH1780; sheet/helix/sheet/sheet/helix, structural genomics, unknown function, NPPSFA; HET: SAM; 1.63A {Pyrococcus horikoshii} SCOP: d.37.1.1 d.37.1.1
Probab=99.33 E-value=2.6e-12 Score=121.20 Aligned_cols=121 Identities=15% Similarity=0.155 Sum_probs=99.7
Q ss_pred cccccccccccCCCEEEEeCCCChhHHHHHHHHHcCCcEEEEEeCCCCcEEEEEEhhhhc------ccCC------c---
Q psy4847 41 RRKIVGDVMTKLEDVYMLSYDAILDFETVSEIMKSGYSRIPVYEDRRTNIVTMFYIKDLA------LVDP------D--- 105 (396)
Q Consensus 41 ~~~tV~dIMtp~~dv~~l~~d~~l~~e~i~~i~~~g~sriPV~~~~~~~IVGiL~vkDLl------~~~~------~--- 105 (396)
.+.+|+++|++. +.+++.++++. ++++.|.+++++++||++++ ++++|+|+.+||+ .... .
T Consensus 124 ~~~~v~~~m~~~--~~~v~~~~~l~-~~~~~~~~~~~~~l~Vvd~~-~~~~Giit~~dl~~~~~~~~~~~~~~~~~~~~~ 199 (282)
T 2yzq_A 124 KGVEIEPYYQRY--VSIVWEGTPLK-AALKALLLSNSMALPVVDSE-GNLVGIVDETDLLRDSEIVRIMKSTELAASSEE 199 (282)
T ss_dssp GGCBSTTTSBSC--CCCEETTSBHH-HHHHHHHTCSSSEEEEECTT-SCEEEEEEGGGGGGCGGGCC-------------
T ss_pred ccCcHHHHhCCC--CEEECCCCCHH-HHHHHHHHcCCcEEEEEcCC-CeEEEEEEHHHHhhhhhhhhhhccchhhhhhhh
Confidence 467899999754 78999999999 99999999999999999755 7899999999998 3221 0
Q ss_pred -------------------cccchhhhhhhhcCCceEEcCCCCHHHHHHHHHhcCCceEEEEEEeCCCCCCCCCCceeee
Q psy4847 106 -------------------DNTPLKTLCQFYQNSCYFVFEDTTLDVLLKQFKEGIKGHMAFVHRVNNEGEGDPFYETVGL 166 (396)
Q Consensus 106 -------------------~~~~l~~v~~~~~~~v~~V~~dt~L~~~L~~f~~~~~~h~avV~~~~~~~~~De~g~~vGI 166 (396)
...+++++ |.+++.+|.+++++.++++.|.+. +.+.++|+ |+.|+++||
T Consensus 200 ~~~~~~~~~~~~~~~~~~~~~~~v~~i---m~~~~~~v~~~~~l~~a~~~m~~~-~~~~lpVv--------d~~~~lvGi 267 (282)
T 2yzq_A 200 EWILESHPTLLFEKFELQLPNKPVAEI---MTRDVIVATPHMTVHEVALKMAKY-SIEQLPVI--------RGEGDLIGL 267 (282)
T ss_dssp -------------------CCCBGGGT---CBSSCCCBCTTSBHHHHHHHHHHH-TCSEEEEE--------ETTTEEEEE
T ss_pred hhhcccchHHHHhHhhhhhccCCHHHh---cCCCCceeCCCCCHHHHHHHHHHc-CcceeEEE--------CCCCCEEEE
Confidence 12344554 458899999999999999999996 77888888 766899999
Q ss_pred ecHHHHHHHHH
Q psy4847 167 ITLEDVIEELI 177 (396)
Q Consensus 167 VTleDIiEeli 177 (396)
||..||++.+.
T Consensus 268 it~~Dil~~~~ 278 (282)
T 2yzq_A 268 IRDFDLLKVLV 278 (282)
T ss_dssp EEHHHHGGGGC
T ss_pred EeHHHHHHHHH
Confidence 99999998764
No 63
>4avf_A Inosine-5'-monophosphate dehydrogenase; oxidoreductase; 2.23A {Pseudomonas aeruginosa}
Probab=99.32 E-value=2.5e-13 Score=140.84 Aligned_cols=152 Identities=15% Similarity=0.178 Sum_probs=21.1
Q ss_pred CCHHHHHHHHHccccccccccCCCC-HHHHHHHHHHhcccccccccccccCCCEEEEeCCCChhHHHHHHHHHcCCcEEE
Q psy4847 3 VHPQGLRSFIRVRDHDVTTEFNDLE-KDEVNIISGALELRRKIVGDVMTKLEDVYMLSYDAILDFETVSEIMKSGYSRIP 81 (396)
Q Consensus 3 ~~~~Elk~ll~~~~~~~~~e~~~l~-~~E~~~i~~alel~~~tV~dIMtp~~dv~~l~~d~~l~~e~i~~i~~~g~sriP 81 (396)
++++++...+.+..- ++--...++ +++..++..+ ++++++|++ +++++++++++. ++++.|.+++++++|
T Consensus 53 VTe~~lA~ala~~GG-iGvI~~~~~~e~~a~~v~~v-----k~~~~~m~~--~~v~v~~~~tv~-ea~~~m~~~~~s~~p 123 (490)
T 4avf_A 53 VTEARLAIAMAQEGG-IGIIHKNMGIEQQAAEVRKV-----KKHETAIVR--DPVTVTPSTKII-ELLQMAREYGFSGFP 123 (490)
T ss_dssp TCSHHHHHHHHHHTS-EEEECCSSCHHHHHHHHHHH-----HHCCC----------------------------------
T ss_pred hCHHHHHHHHHHcCC-CccccCCCCHHHHHHHhhhh-----cccccCccc--CceEeCCCCcHH-HHHHHHHHhCCCEEE
Confidence 567888877766410 111112334 4446666665 567899985 488999999999 999999999999999
Q ss_pred EEeCCCCcEEEEEEhhhhcccCCccccchhhhhhhhcC-CceEEcCCCCHHHHHHHHHhcCCceEEEEEEeCCCCCCCCC
Q psy4847 82 VYEDRRTNIVTMFYIKDLALVDPDDNTPLKTLCQFYQN-SCYFVFEDTTLDVLLKQFKEGIKGHMAFVHRVNNEGEGDPF 160 (396)
Q Consensus 82 V~~~~~~~IVGiL~vkDLl~~~~~~~~~l~~v~~~~~~-~v~~V~~dt~L~~~L~~f~~~~~~h~avV~~~~~~~~~De~ 160 (396)
|++ + ++++|+|+.+||.+... ...++.++|.. + ++++|++++++.++++.|.+. +.+.++|+ |++
T Consensus 124 Vvd-~-g~lvGIVt~rDl~~~~~-~~~~V~~vMtp--~~~~vtv~~~~~l~ea~~~m~~~-~i~~lpVV--------De~ 189 (490)
T 4avf_A 124 VVE-Q-GELVGIVTGRDLRVKPN-AGDTVAAIMTP--KDKLVTAREGTPLEEMKAKLYEN-RIEKMLVV--------DEN 189 (490)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred EEE-C-CEEEEEEEhHHhhhccc-cCCcHHHHhcc--CCCCEEECCCCcHHHHHHHHHHc-CCCEEEEE--------cCC
Confidence 998 3 89999999999975432 23567777631 3 689999999999999999995 88999999 899
Q ss_pred CceeeeecHHHHHHHHH
Q psy4847 161 YETVGLITLEDVIEELI 177 (396)
Q Consensus 161 g~~vGIVTleDIiEeli 177 (396)
|+++|+||++||++.+.
T Consensus 190 g~lvGiIT~~Dil~~~~ 206 (490)
T 4avf_A 190 FYLRGLVTFRDIEKAKT 206 (490)
T ss_dssp -----------------
T ss_pred CcEEEEEehHHhhhhcc
Confidence 99999999999999864
No 64
>2v8q_E 5'-AMP-activated protein kinase subunit gamma-1; phosphorylation, nucleotide-binding, serine/threonine-protei kinase, magnesium, CBS domain; HET: AMP; 2.10A {Rattus norvegicus} SCOP: d.37.1.1 d.37.1.1 PDB: 2v92_E* 2v9j_E* 2y8l_E* 2y8q_E* 2y94_E* 2ya3_E*
Probab=99.30 E-value=1.4e-11 Score=119.34 Aligned_cols=124 Identities=16% Similarity=0.300 Sum_probs=100.8
Q ss_pred ccccccc--cccCCCEEEEeCCCChhHHHHHHHHHcCCcEEEEEeCCCCcEEEEEEhhhhcccCCc-----cccchhhhh
Q psy4847 42 RKIVGDV--MTKLEDVYMLSYDAILDFETVSEIMKSGYSRIPVYEDRRTNIVTMFYIKDLALVDPD-----DNTPLKTLC 114 (396)
Q Consensus 42 ~~tV~dI--Mtp~~dv~~l~~d~~l~~e~i~~i~~~g~sriPV~~~~~~~IVGiL~vkDLl~~~~~-----~~~~l~~v~ 114 (396)
..+++++ |+ ..++++++.++++. ++++.|.+++++++||++++ ++++|+|+.+||+..... ...++.+++
T Consensus 189 ~~~v~~~~v~~-~~~~~~v~~~~~l~-~~~~~m~~~~~~~~~Vvd~~-~~l~Giit~~dl~~~~~~~~~~~~~~~v~~~~ 265 (330)
T 2v8q_E 189 SKSLEELQIGT-YANIAMVRTTTPVY-VALGIFVQHRVSALPVVDEK-GRVVDIYSKFDVINLAAEKTYNNLDVSVTKAL 265 (330)
T ss_dssp GSBHHHHTCSB-CSSCCCEETTCBHH-HHHHHHHHHCCSEEEEECTT-SBEEEEEEGGGTGGGGGSSCCCCCSSBHHHHG
T ss_pred cCCHHHhcccC-cCCceEECCCCCHH-HHHHHHHHcCCCeEEEECCC-CcEEEEEEHHHHHHHHhccccccccCcHHHHH
Confidence 3556666 54 14578999999999 99999999999999999765 789999999999864321 134566665
Q ss_pred hh---hcCCceEEcCCCCHHHHHHHHHhcCCceEEEEEEeCCCCCCCCCCceeeeecHHHHHHHHH
Q psy4847 115 QF---YQNSCYFVFEDTTLDVLLKQFKEGIKGHMAFVHRVNNEGEGDPFYETVGLITLEDVIEELI 177 (396)
Q Consensus 115 ~~---~~~~v~~V~~dt~L~~~L~~f~~~~~~h~avV~~~~~~~~~De~g~~vGIVTleDIiEeli 177 (396)
.. +.+++.+|.+++++.++++.|.+. +.+.++|+ |++|+++||||..||++.+.
T Consensus 266 ~~~~~~~~~~~~v~~~~~l~~a~~~m~~~-~~~~l~Vv--------d~~g~l~Giit~~Dil~~~~ 322 (330)
T 2v8q_E 266 QHRSHYFEGVLKCYLHETLEAIINRLVEA-EVHRLVVV--------DEHDVVKGIVSLSDILQALV 322 (330)
T ss_dssp GGCCSCCCSCCEECTTSBHHHHHHHHHHH-TCSEEEEE--------CTTSBEEEEEEHHHHHHHHH
T ss_pred hccccccCCCeEECCCCcHHHHHHHHHHC-CCcEEEEE--------cCCCcEEEEEeHHHHHHHHH
Confidence 31 137889999999999999999995 77878888 88899999999999999987
No 65
>2d4z_A Chloride channel protein; CLC chloride channel cytoplasmic domain, CBS domains, ION CH regulatory subunit, transport protein; 3.10A {Torpedo marmorata} SCOP: d.37.1.1
Probab=99.30 E-value=2.9e-12 Score=121.78 Aligned_cols=125 Identities=14% Similarity=0.156 Sum_probs=98.1
Q ss_pred ccccccccccccCCCEEEEeCCCChhHHHHHHHHHcCCcEEEEEeCC-CCcEEEEEEhhhhcccC-------Cc---c--
Q psy4847 40 LRRKIVGDVMTKLEDVYMLSYDAILDFETVSEIMKSGYSRIPVYEDR-RTNIVTMFYIKDLALVD-------PD---D-- 106 (396)
Q Consensus 40 l~~~tV~dIMtp~~dv~~l~~d~~l~~e~i~~i~~~g~sriPV~~~~-~~~IVGiL~vkDLl~~~-------~~---~-- 106 (396)
....+|+|||++ +++++..++++. ++.+.|.+++++++||++++ .+.++|+|+.+||+.+. .. .
T Consensus 10 ~~~~~v~diMt~--~vvtv~~~~tv~-~~~~lm~~~~~~~~PVVd~~~~~~LvGiIt~~dl~~~l~~~~~~~~~~~~~~~ 86 (250)
T 2d4z_A 10 KYNIQVGDIMVR--DVTSIASTSTYG-DLLHVLRQTKLKFFPFVDTPDTNTLLGSIDRTEVEGLLQRRISAYRRQPAAAA 86 (250)
T ss_dssp CSSCBTTSSSBS--SCCCEETTCBHH-HHHHHHHHCCCSEEEEESCTTTCBEEEEEEHHHHHHHHHHHHHTTSSSCCCCC
T ss_pred cCCCChHHhcCC--CCeEECCCCCHH-HHHHHHHhcCCCEEEEEecCCCCeEEEEEEHHHHHHHHHHhhhhhhhhhhhhh
Confidence 467899999996 489999999999 99999999999999999864 36799999999996310 00 0
Q ss_pred ----------------------------------------------c---------------------------------
Q psy4847 107 ----------------------------------------------N--------------------------------- 107 (396)
Q Consensus 107 ----------------------------------------------~--------------------------------- 107 (396)
.
T Consensus 87 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 166 (250)
T 2d4z_A 87 EADEEGRNGETGASFTGEAESSFAYIDQEDAEGQQREGLEAVKVQTEDPRPPSPVPAEEPTQTSGIYQKKQKGTGQVASR 166 (250)
T ss_dssp CBCCC---------------------------------------------------------------------------
T ss_pred cccccccccccccccccCCcceeeeccccccccccccCccccCCcccCCccccccccccccccccccccccccccccCcc
Confidence 0
Q ss_pred ----cc-----------hh-hh--h-hhhcCCceEEcCCCCHHHHHHHHHhcCCceEEEEEEeCCCCCCCCCCceeeeec
Q psy4847 108 ----TP-----------LK-TL--C-QFYQNSCYFVFEDTTLDVLLKQFKEGIKGHMAFVHRVNNEGEGDPFYETVGLIT 168 (396)
Q Consensus 108 ----~~-----------l~-~v--~-~~~~~~v~~V~~dt~L~~~L~~f~~~~~~h~avV~~~~~~~~~De~g~~vGIVT 168 (396)
.. +. .| . .+|...+.+|.++++|..+...|..- +.+-++|+ + .|+++||||
T Consensus 167 ~~~~i~~~~~~~~~~~~l~~~Vdl~~~~md~sP~tv~~~tsL~~v~~LF~~l-glr~l~V~--------~-~GrLVGIVT 236 (250)
T 2d4z_A 167 FEEMLTLEEIYRWEQREKNVVVNFETCRIDQSPFQLVEGTSLQKTHTLFSLL-GLDRAYVT--------S-MGKLVGVVA 236 (250)
T ss_dssp CCSCCBHHHHHHHHHHHTTCBCCTTSSCEECCSCCBCTTCBHHHHHHHHHHH-TCSEEEEE--------E-TTEEEEEEE
T ss_pred cccccChhhhhhHHHHhcCceeccccccccCCCeEECCCCcHHHHHHHHHHh-CCeEEEEE--------E-CCEEEEEEE
Confidence 00 00 00 0 13456778899999999999999995 67777777 4 599999999
Q ss_pred HHHHHHHHH
Q psy4847 169 LEDVIEELI 177 (396)
Q Consensus 169 leDIiEeli 177 (396)
+.|++.+|.
T Consensus 237 rkDl~kai~ 245 (250)
T 2d4z_A 237 LAEIQAAIE 245 (250)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 999999986
No 66
>1vrd_A Inosine-5'-monophosphate dehydrogenase; TM1347, structural G joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.18A {Thermotoga maritima} SCOP: c.1.5.1
Probab=99.09 E-value=9e-12 Score=128.93 Aligned_cols=132 Identities=17% Similarity=0.210 Sum_probs=13.4
Q ss_pred CCCCHHH-HHHHHHHhcccccccccccccCCCEEEEeCCCChhHHHHHHHHHcCCcEEEEEeCCCCcEEEEEEhhhhccc
Q psy4847 24 NDLEKDE-VNIISGALELRRKIVGDVMTKLEDVYMLSYDAILDFETVSEIMKSGYSRIPVYEDRRTNIVTMFYIKDLALV 102 (396)
Q Consensus 24 ~~l~~~E-~~~i~~alel~~~tV~dIMtp~~dv~~l~~d~~l~~e~i~~i~~~g~sriPV~~~~~~~IVGiL~vkDLl~~ 102 (396)
..++.++ ...+..+ ++++++|++ +++++++++++. ++++.|.+++++.+||++++ ++++|+|+.+||+..
T Consensus 80 ~~~~~e~~~~~v~~v-----~~~~~iM~~--~~~~v~~~~tv~-ea~~~m~~~~~~~~pVvd~~-~~lvGivt~~Dl~~~ 150 (494)
T 1vrd_A 80 KNLTPDEQARQVSIV-----KKTENGIIY--DPITVTPDMTVK-EAIDLMAEYKIGGLPVVDEE-GRLVGLLTNRDVRFE 150 (494)
T ss_dssp SSSCHHHHHHHHHHH-----HTC---------------------------------------------------------
T ss_pred cCCChHHHHHHHHhh-----hhHhhcCcc--CCeEECCCCCHH-HHHHHHHHcCceEEEEEcCC-CEEEEEEEHHHHHhh
Confidence 3455544 3445554 346889986 488999999999 99999999999999999865 789999999999864
Q ss_pred CCccccchhhhhhhhcC--CceEEcCCCCHHHHHHHHHhcCCceEEEEEEeCCCCCCCCCCceeeeecHHHHHHHHH
Q psy4847 103 DPDDNTPLKTLCQFYQN--SCYFVFEDTTLDVLLKQFKEGIKGHMAFVHRVNNEGEGDPFYETVGLITLEDVIEELI 177 (396)
Q Consensus 103 ~~~~~~~l~~v~~~~~~--~v~~V~~dt~L~~~L~~f~~~~~~h~avV~~~~~~~~~De~g~~vGIVTleDIiEeli 177 (396)
.. ...++.++| .+ ++++|.+++++.++++.|.+. +.+.++|+ |+.|+++|+||..||++.+.
T Consensus 151 ~~-~~~~v~~im---~~~~~~~~v~~~~~l~ea~~~m~~~-~~~~lpVV--------d~~g~lvGiIt~~Dll~~~~ 214 (494)
T 1vrd_A 151 KN-LSKKIKDLM---TPREKLIVAPPDISLEKAKEILHQH-RIEKLPLV--------SKDNKLVGLITIKDIMSVIE 214 (494)
T ss_dssp -----------------------------------------------------------------------CHHHHT
T ss_pred cC-CCCcHHHHh---CCCCCCeEECCCCCHHHHHHHHHHc-CCcEEEEE--------cCCCeEEEEEEHHHHHhhhc
Confidence 22 234666665 45 889999999999999999995 77778888 88899999999999999986
No 67
>1jcn_A Inosine monophosphate dehydrogenase I; IMPD, IMPDH, guanine nucleotide synthesis, oxidoreductase; HET: CPR; 2.50A {Homo sapiens} SCOP: c.1.5.1 d.37.1.1 PDB: 1jr1_A* 1nf7_A* 1b3o_A* 1nfb_A*
Probab=98.88 E-value=4e-11 Score=124.73 Aligned_cols=120 Identities=18% Similarity=0.187 Sum_probs=68.1
Q ss_pred cccccccccCCCEEEEeCCCChhHHHHHHHHHcCCcEEEEEeCC--CCcEEEEEEhhhhcccCC-ccccchhhhhhhhcC
Q psy4847 43 KIVGDVMTKLEDVYMLSYDAILDFETVSEIMKSGYSRIPVYEDR--RTNIVTMFYIKDLALVDP-DDNTPLKTLCQFYQN 119 (396)
Q Consensus 43 ~tV~dIMtp~~dv~~l~~d~~l~~e~i~~i~~~g~sriPV~~~~--~~~IVGiL~vkDLl~~~~-~~~~~l~~v~~~~~~ 119 (396)
+++.++|++. ++++++++++. ++++.|.+++++.+||++++ .++++|+|+.+||....+ ....++.++| .+
T Consensus 108 ~~~~~im~~~--~~~v~~~~tv~-ea~~~m~~~~~~~~pVvd~~~~~~~lvGiVt~~Dl~~~~~~~~~~~v~~vm---~~ 181 (514)
T 1jcn_A 108 KNFEQGFITD--PVVLSPSHTVG-DVLEAKMRHGFSGIPITETGTMGSKLVGIVTSRDIDFLAEKDHTTLLSEVM---TP 181 (514)
T ss_dssp HTCCTTSCSS--CCCCCC------------------CEESCC--------CCEECTTTTC-------------------C
T ss_pred hhhhhccccC--CEEECCCCCHH-HHHHHHHhcCCCEEEEEeCCCcCCEEEEEEEHHHHHhhhhccCCCCHHHHh---CC
Confidence 4788999854 77899999999 99999999999999999763 379999999999986532 2234666665 46
Q ss_pred --CceEEcCCCCHHHHHHHHHhcCCceEEEEEEeCCCCCCCCCCceeeeecHHHHHHHHH
Q psy4847 120 --SCYFVFEDTTLDVLLKQFKEGIKGHMAFVHRVNNEGEGDPFYETVGLITLEDVIEELI 177 (396)
Q Consensus 120 --~v~~V~~dt~L~~~L~~f~~~~~~h~avV~~~~~~~~~De~g~~vGIVTleDIiEeli 177 (396)
++++|.+++++.++++.|.+. +.+.++|+ |+.|+++|+||..||++.+.
T Consensus 182 ~~~~~tv~~~~~l~ea~~~m~~~-~~~~lpVV--------d~~g~lvGiIt~~Dll~~~~ 232 (514)
T 1jcn_A 182 RIELVVAPAGVTLKEANEILQRS-KKGKLPIV--------NDCDELVAIIARTDLKKNRD 232 (514)
T ss_dssp CBCCCCEETTCCSTTTTTHHHHH-TCSCCCEE--------SSSSCCC----CCCCSSCCC
T ss_pred CCCCeEECCCCCHHHHHHHHHHc-CCCcccEE--------CCCCeEEEEEEHHHHHHHhh
Confidence 789999999999999999996 66666777 88899999999999987654
No 68
>4af0_A Inosine-5'-monophosphate dehydrogenase; oxidoreductase, GTP biosynthesis, drug resistance; HET: MOA IMP; 2.20A {Cryptococcus neoformans} PDB: 4af0_B*
Probab=98.83 E-value=6.4e-10 Score=114.94 Aligned_cols=126 Identities=17% Similarity=0.243 Sum_probs=7.4
Q ss_pred HHHHHHHHHhcccccccccccccCCCEEEEeCCCChhHHHHHHHHHcCCcEEEEEeCC--CCcEEEEEEhhhhcccCCcc
Q psy4847 29 DEVNIISGALELRRKIVGDVMTKLEDVYMLSYDAILDFETVSEIMKSGYSRIPVYEDR--RTNIVTMFYIKDLALVDPDD 106 (396)
Q Consensus 29 ~E~~~i~~alel~~~tV~dIMtp~~dv~~l~~d~~l~~e~i~~i~~~g~sriPV~~~~--~~~IVGiL~vkDLl~~~~~~ 106 (396)
++.+++..+-.+. ..|. .+.++|.++.++. ++.+.+.+++++.+||+++. .++++|||+-+|+.+.++
T Consensus 129 ~Qa~~V~~VKr~e-----~g~i--~dPvtl~P~~Tv~-da~~l~~~~~isgvpVvd~g~~~~kLvGIvT~RD~rf~d~-- 198 (556)
T 4af0_A 129 EQAAMVRRVKKYE-----NGFI--TDPLCLGPDATVG-DVLEIKAKFGFCGVPITETGEPDSKLLGIVTGRDVQFQDA-- 198 (556)
T ss_dssp HHHHHHHHHHHCC-----C-------------------------------------------------------------
T ss_pred HHHHHHHHHHhcc-----cCcc--CCCeEcCCCCCHH-HHHHHHHHhCCCccccccccCcCCEEEEEEeccccccccc--
Confidence 3456666664443 4454 3467999999999 99999999999999999752 478999999999987544
Q ss_pred ccchhhhhhhhcCCceEEcCCCCHHHHHHHHHhcCCceEEEEEEeCCCCCCCCCCceeeeecHHHHHHHH
Q psy4847 107 NTPLKTLCQFYQNSCYFVFEDTTLDVLLKQFKEGIKGHMAFVHRVNNEGEGDPFYETVGLITLEDVIEEL 176 (396)
Q Consensus 107 ~~~l~~v~~~~~~~v~~V~~dt~L~~~L~~f~~~~~~h~avV~~~~~~~~~De~g~~vGIVTleDIiEel 176 (396)
..+++++|. .+++++++++++.++.+.|.++ +..-++|+ |+.|+++|+||..||...-
T Consensus 199 ~~~V~evMT---~~lvt~~~~~~leeA~~iL~~~-kieklpVV--------d~~g~LvGlIT~kDi~k~~ 256 (556)
T 4af0_A 199 ETPIKSVMT---TEVVTGSSPITLEKANSLLRET-KKGKLPIV--------DSNGHLVSLVARSDLLKNQ 256 (556)
T ss_dssp ----------------------------------------------------------------------
T ss_pred ceEhhhhcc---cceEEecCCCCHHHHHHHHHHc-cccceeEE--------ccCCcEEEEEEechhhhhh
Confidence 457888875 6899999999999999999995 77888888 8899999999999998764
No 69
>3mdp_A Cyclic nucleotide-binding domain (CNMP-BD) protei; structural genomics, joint center for structural genomics; HET: MSE; 1.90A {Geobacter metallireducens}
Probab=98.61 E-value=1.3e-07 Score=79.17 Aligned_cols=97 Identities=24% Similarity=0.235 Sum_probs=76.8
Q ss_pred cHHHHHHHHhcCCCCCCCccccccccCcccceEEEEEeeEEEEEE----cCCcc---eeecCCccchhhhhcccccccCC
Q psy4847 240 VGSLLDRITQKGTSQQKPTFKSLKKRNKPVDYFVLILEGRAEVVV----GKENL---VYEAGPFSYFGCQALTQNIGIAE 312 (396)
Q Consensus 240 ~e~vL~~Ll~~~~v~~~~~~~~LY~~g~~~d~f~LIL~Grv~V~~----G~e~~---~~E~gpfs~~G~~aL~~~~~~~~ 312 (396)
++..+..|..........++..||+.|++++++++|++|+|++.. |++.. ....+|..+||+.++...
T Consensus 18 ~~~~~~~l~~~~~~~~~~~g~~i~~~g~~~~~~y~i~~G~v~~~~~~~~g~~~~~~~~~~~~~G~~fG~~~~~~~----- 92 (142)
T 3mdp_A 18 TDEQLKDIALISEEKSFPTGSVIFKENSKADNLMLLLEGGVELFYSNGGAGSAANSTVCSVVPGAIFGVSSLIKP----- 92 (142)
T ss_dssp CHHHHHHHHHTEEEEEECTTCEEECTTSBCCEEEEEEESCEEEECC---------CEEEEECTTCEECGGGSSTT-----
T ss_pred CHHHHHHHHHhhcEEecCCCCEEEeCCCCCCcEEEEEeCEEEEEEECCCCCceEeeeEEEecCCCEechHHHcCC-----
Confidence 456678888887777778888999999999999999999999976 77777 888999999999888741
Q ss_pred CCCCCCCcccccCCCcccccccccCCcccccCcEEEEcCCeEEEEEeHHHHHHHHHH
Q psy4847 313 SPTNNSSAAQAYGGSLQSVNLDSILRYTFVPDYSVRATTEMFYVKIRRSFYLAAKRA 369 (396)
Q Consensus 313 ~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~PD~sv~~~~d~~~~~Itr~~Y~~al~a 369 (396)
. | -.++++|.++|+++.|++..+...+..
T Consensus 93 ~------~----------------------~~~~~~a~~~~~~~~i~~~~~~~l~~~ 121 (142)
T 3mdp_A 93 Y------H----------------------YTSSARATKPVRVVDINGARLREMSEN 121 (142)
T ss_dssp C------B----------------------CSSEEEESSCEEEEEEEHHHHHHHHHH
T ss_pred C------C----------------------ceEEEEECCcEEEEEEeHHHHHHHHHH
Confidence 0 0 123999999999999999999887653
No 70
>1wgp_A Probable cyclic nucleotide-gated ION channel 6; cyclic nucleotide monophosphate, CNMP, CNMP-binding, structural genomics; NMR {Arabidopsis thaliana} SCOP: b.82.3.2
Probab=98.56 E-value=3.6e-07 Score=76.32 Aligned_cols=102 Identities=19% Similarity=0.172 Sum_probs=79.7
Q ss_pred cHHHHHHHHhcCCCCCCCccccccccCcccceEEEEEeeEEEEEE---cCCccee--ecCCccchhhhhc---ccccccC
Q psy4847 240 VGSLLDRITQKGTSQQKPTFKSLKKRNKPVDYFVLILEGRAEVVV---GKENLVY--EAGPFSYFGCQAL---TQNIGIA 311 (396)
Q Consensus 240 ~e~vL~~Ll~~~~v~~~~~~~~LY~~g~~~d~f~LIL~Grv~V~~---G~e~~~~--E~gpfs~~G~~aL---~~~~~~~ 311 (396)
++..+..|.........++...||+.|++++++++|++|+|++.. |++.... ..+|.++||+.+| ... .
T Consensus 18 ~~~~~~~l~~~~~~~~~~~g~~i~~~G~~~~~~y~i~~G~v~~~~~~~g~~~~~~~~~l~~G~~fGe~~l~~~~~~--~- 94 (137)
T 1wgp_A 18 DERLLDAICERLKPCLFTEKSYLVREGDPVNEMLFIIRGRLESVTTDGGRSGFYNRSLLKEGDFCGDELLTWALDP--K- 94 (137)
T ss_dssp CHHHHHHHHHHCBCCCBCTTEEEECTTSBCSEEEEEEECCCEEECCSSCSSSSSCEEECCTTCBSSTHHHHHHHCS--S-
T ss_pred CHHHHHHHHHHheEEEeCCCCEEEeCCCCCCeEEEEEeeEEEEEEcCCCcceeeeeeeecCCCEecHHHHHHHhcc--c-
Confidence 456678888888888888899999999999999999999999875 5555555 8999999999985 321 0
Q ss_pred CCCCCCCCcccccCCCcccccccccCCccc-ccCcEEEEcCCeEEEEEeHHHHHHHHHH
Q psy4847 312 ESPTNNSSAAQAYGGSLQSVNLDSILRYTF-VPDYSVRATTEMFYVKIRRSFYLAAKRA 369 (396)
Q Consensus 312 ~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~-~PD~sv~~~~d~~~~~Itr~~Y~~al~a 369 (396)
+ +..| ...++++|.++|+++.|++..+...+..
T Consensus 95 --~-----------------------~~~~~~~~~~~~A~~~~~~~~i~~~~~~~l~~~ 128 (137)
T 1wgp_A 95 --S-----------------------GSNLPSSTRTVKALTEVEAFALIADELKFVASQ 128 (137)
T ss_dssp --C-----------------------CSSSCBCSSEEEESSCBEEEEEEHHHHHHHHHH
T ss_pred --c-----------------------ccccccceeEEEEeEEEEEEEECHHHHHHHHHH
Confidence 0 0011 1245999999999999999999876653
No 71
>3idb_B CAMP-dependent protein kinase type II-beta regulatory subunit, CAMP-dependent protein kinase catalytic subunit alpha; PKA, SPR, affinity; HET: TPO SEP ANP; 1.62A {Rattus norvegicus} PDB: 3idc_B*
Probab=98.54 E-value=2.7e-07 Score=79.64 Aligned_cols=99 Identities=16% Similarity=0.091 Sum_probs=82.2
Q ss_pred cHHHHHHHHhcCCCCCCCccccccccCcccceEEEEEeeEEEEEE---cCCcceeecCCccchhhhhcccccccCCCCCC
Q psy4847 240 VGSLLDRITQKGTSQQKPTFKSLKKRNKPVDYFVLILEGRAEVVV---GKENLVYEAGPFSYFGCQALTQNIGIAESPTN 316 (396)
Q Consensus 240 ~e~vL~~Ll~~~~v~~~~~~~~LY~~g~~~d~f~LIL~Grv~V~~---G~e~~~~E~gpfs~~G~~aL~~~~~~~~~~~~ 316 (396)
++..+..|+.........++..||+.|++++++++|++|+|++.. |++......+|..+||+.++.... +
T Consensus 50 ~~~~l~~l~~~~~~~~~~~g~~i~~~G~~~~~~y~i~~G~v~~~~~~~g~~~~~~~~~~G~~fGe~~~~~~~-----~-- 122 (161)
T 3idb_B 50 DPEQMSQVLDAMFEKLVKEGEHVIDQGDDGDNFYVIDRGTFDIYVKCDGVGRCVGNYDNRGSFGELALMYNT-----P-- 122 (161)
T ss_dssp CHHHHHHHHHHCEEEEECTTCEEECTTSCCCEEEEEEESEEEEEEEETTEEEEEEEEESCCEECGGGGTCCC-----C--
T ss_pred CHHHHHHHHHhcceeEeCCCCEEEeCCCCCcEEEEEEeCEEEEEEcCCCCeEEEEEcCCCCEechHHHHcCC-----C--
Confidence 456788888887777778888999999999999999999999987 456677789999999999887510 0
Q ss_pred CCCcccccCCCcccccccccCCcccccCcEEEEcCCeEEEEEeHHHHHHHHHHhh
Q psy4847 317 NSSAAQAYGGSLQSVNLDSILRYTFVPDYSVRATTEMFYVKIRRSFYLAAKRATL 371 (396)
Q Consensus 317 ~~~~~~~~~~s~~~~~~~~~~~~~~~PD~sv~~~~d~~~~~Itr~~Y~~al~as~ 371 (396)
-.++++|.++|.++.|++..|...+...-
T Consensus 123 --------------------------~~~~v~A~~~~~~~~i~~~~~~~l~~~~p 151 (161)
T 3idb_B 123 --------------------------RAATITATSPGALWGLDRVTFRRIIVKNN 151 (161)
T ss_dssp --------------------------CSSEEEESSSEEEEEEEHHHHHHHHHHHH
T ss_pred --------------------------cccEEEECCCeEEEEEeHHHHHHHHHHCH
Confidence 02389999999999999999998876543
No 72
>2pqq_A Putative transcriptional regulator; APC7345, streptomyces coelicolor structural genomics, PSI-2, protein structure initiative; 2.00A {Streptomyces coelicolor A3}
Probab=98.53 E-value=1.6e-07 Score=79.03 Aligned_cols=96 Identities=16% Similarity=0.134 Sum_probs=80.8
Q ss_pred cHHHHHHHHhcCCCCCCCccccccccCcccceEEEEEeeEEEEEE----cCCcceeecCCccchhhhhcccccccCCCCC
Q psy4847 240 VGSLLDRITQKGTSQQKPTFKSLKKRNKPVDYFVLILEGRAEVVV----GKENLVYEAGPFSYFGCQALTQNIGIAESPT 315 (396)
Q Consensus 240 ~e~vL~~Ll~~~~v~~~~~~~~LY~~g~~~d~f~LIL~Grv~V~~----G~e~~~~E~gpfs~~G~~aL~~~~~~~~~~~ 315 (396)
++..+..|.........+++..||+.|++++++++|++|+|++.. |++......+|..+||+.++....
T Consensus 17 ~~~~~~~l~~~~~~~~~~~g~~i~~~g~~~~~~y~i~~G~v~~~~~~~~g~~~~~~~~~~g~~~G~~~~~~~~------- 89 (149)
T 2pqq_A 17 DDEQSAELRASMSEVTLARGDTLFHEGDPGDRLYVVTEGKVKLHRTSPDGRENMLAVVGPSELIGELSLFDPG------- 89 (149)
T ss_dssp CHHHHHHHHHHCEEEEECTTCEEECTTSEECEEEEEEESCEEEEEECTTSSEEEEEEECTTCEESGGGGTSCE-------
T ss_pred CHHHHHHHHHhceEEEeCCCCEEECCCCCCCeEEEEEecEEEEEEECCCCcEEEEEEcCCcCEechHHhcCCC-------
Confidence 556788888887777788888999999999999999999999986 778888999999999998876510
Q ss_pred CCCCcccccCCCcccccccccCCcccccCcEEEEcCCeEEEEEeHHHHHHHHH
Q psy4847 316 NNSSAAQAYGGSLQSVNLDSILRYTFVPDYSVRATTEMFYVKIRRSFYLAAKR 368 (396)
Q Consensus 316 ~~~~~~~~~~~s~~~~~~~~~~~~~~~PD~sv~~~~d~~~~~Itr~~Y~~al~ 368 (396)
| ..++++|.++|+++.|++..+...+.
T Consensus 90 ----~----------------------~~~~~~a~~~~~~~~i~~~~~~~l~~ 116 (149)
T 2pqq_A 90 ----P----------------------RTATGTALTEVKLLALGHGDLQPWLN 116 (149)
T ss_dssp ----E----------------------CSSEEEESSCEEEEEEEGGGHHHHHH
T ss_pred ----C----------------------cceEEEEccceEEEEEeHHHHHHHHH
Confidence 0 12499999999999999998876653
No 73
>2z69_A DNR protein; beta barrel, dimerization helix, transcription regulator; 2.10A {Pseudomonas aeruginosa}
Probab=98.48 E-value=7.9e-07 Score=75.30 Aligned_cols=96 Identities=10% Similarity=0.112 Sum_probs=77.5
Q ss_pred cHHHHHHHHhcCCCCCCCccccccccCcccceEEEEEeeEEEEEE----cCCcceeecCCccchhhhhcccccccCCCCC
Q psy4847 240 VGSLLDRITQKGTSQQKPTFKSLKKRNKPVDYFVLILEGRAEVVV----GKENLVYEAGPFSYFGCQALTQNIGIAESPT 315 (396)
Q Consensus 240 ~e~vL~~Ll~~~~v~~~~~~~~LY~~g~~~d~f~LIL~Grv~V~~----G~e~~~~E~gpfs~~G~~aL~~~~~~~~~~~ 315 (396)
++..+..|..........++..||+.|++++++++|++|+|++.. |++-.....+|..+||+.++....
T Consensus 24 ~~~~~~~l~~~~~~~~~~~g~~i~~~g~~~~~~y~i~~G~v~~~~~~~~g~~~~~~~~~~G~~~G~~~~~~~~------- 96 (154)
T 2z69_A 24 SPVQLQELLASSDLVNLDKGAYVFRQGEPAHAFYYLISGCVKIYRLTPEGQEKILEVTNERNTFAEAMMFMDT------- 96 (154)
T ss_dssp CHHHHHHHHHTCEEEEECTTCEEECTTSBCCEEEEEEESCEEEECCCC-----CCEEECTTEEESGGGGGSSC-------
T ss_pred CHHHHHHHHhhCcEEEecCCCEEecCCCccceEEEEEeCEEEEEEECCCCCEEEEEEccCCCeeccHhhccCC-------
Confidence 567788888887777788888999999999999999999999985 788888999999999999887510
Q ss_pred CCCCcccccCCCcccccccccCCcccccCcEEEEcCCeEEEEEeHHHHHHHH
Q psy4847 316 NNSSAAQAYGGSLQSVNLDSILRYTFVPDYSVRATTEMFYVKIRRSFYLAAK 367 (396)
Q Consensus 316 ~~~~~~~~~~~s~~~~~~~~~~~~~~~PD~sv~~~~d~~~~~Itr~~Y~~al 367 (396)
+ ...++++|.++|+++.|++..+...+
T Consensus 97 ----~---------------------~~~~~~~a~~~~~~~~i~~~~~~~l~ 123 (154)
T 2z69_A 97 ----P---------------------NYVATAQAVVPSQLFRFSNKAYLRQL 123 (154)
T ss_dssp ----S---------------------BCSSEEEESSSEEEEEEEHHHHHHHH
T ss_pred ----C---------------------CCceEEEEccceEEEEECHHHHHHHH
Confidence 0 01349999999999999999887654
No 74
>4f8a_A Potassium voltage-gated channel subfamily H membe; probable regulatory domain of potassium channel, membrane PR transport protein; 2.20A {Mus musculus}
Probab=98.47 E-value=5.7e-07 Score=76.84 Aligned_cols=98 Identities=16% Similarity=0.087 Sum_probs=81.0
Q ss_pred cHHHHHHHHhcCCCCCCCccccccccCcccceEEEEEeeEEEEEEcCCcceeecCCccchhhhhcccccccCCCCCCCCC
Q psy4847 240 VGSLLDRITQKGTSQQKPTFKSLKKRNKPVDYFVLILEGRAEVVVGKENLVYEAGPFSYFGCQALTQNIGIAESPTNNSS 319 (396)
Q Consensus 240 ~e~vL~~Ll~~~~v~~~~~~~~LY~~g~~~d~f~LIL~Grv~V~~G~e~~~~E~gpfs~~G~~aL~~~~~~~~~~~~~~~ 319 (396)
++..+..|..+.......++..||+.|++++++++|++|+|++.. ++......+|..+||+.++.....
T Consensus 39 ~~~~~~~l~~~~~~~~~~~g~~i~~~g~~~~~~y~i~~G~v~~~~-~~~~~~~~~~G~~fG~~~~~~~~~---------- 107 (160)
T 4f8a_A 39 SDGCLRALAMEFQTVHCAPGDLIYHAGESVDSLCFVVSGSLEVIQ-DDEVVAILGKGDVFGDVFWKEATL---------- 107 (160)
T ss_dssp CHHHHHHHHTTCEEEEECTTCEEECTTSBCCEEEEEEESEEEEEE-TTEEEEEEETTCEEECCTTTCSSC----------
T ss_pred CHHHHHHHHHhceeeeeCCCCEEEeCCCCccEEEEEEeeEEEEEE-CCEEEEEecCCCEeCcHHHhcCcc----------
Confidence 567788888887777778888999999999999999999999987 567788899999999998875100
Q ss_pred cccccCCCcccccccccCCcccccCcEEEEcCCeEEEEEeHHHHHHHHHH
Q psy4847 320 AAQAYGGSLQSVNLDSILRYTFVPDYSVRATTEMFYVKIRRSFYLAAKRA 369 (396)
Q Consensus 320 ~~~~~~~s~~~~~~~~~~~~~~~PD~sv~~~~d~~~~~Itr~~Y~~al~a 369 (396)
--..++++|.++|+++.|++..+...+..
T Consensus 108 ---------------------~~~~~~~~a~~~~~v~~i~~~~~~~l~~~ 136 (160)
T 4f8a_A 108 ---------------------AQSCANVRALTYCDLHVIKRDALQKVLEF 136 (160)
T ss_dssp ---------------------CBCSSEEEESSCEEEEEEEHHHHHHHHHH
T ss_pred ---------------------cceEEEEEECCceEEEEEcHHHHHHHHHH
Confidence 00124999999999999999999887653
No 75
>3pna_A CAMP-dependent protein kinase type I-alpha regula subunit; beta-barrel, CAMP-binding, catalytic subunit, transferase; HET: CMP; 1.50A {Bos taurus} PDB: 3fhi_B* 3iia_A 3plq_A* 1u7e_B* 3pvb_B*
Probab=98.44 E-value=5.4e-07 Score=77.23 Aligned_cols=99 Identities=19% Similarity=0.139 Sum_probs=81.7
Q ss_pred cHHHHHHHHhcCCCCCCCccccccccCcccceEEEEEeeEEEEEEcCCcceeecCCccchhhhhcccccccCCCCCCCCC
Q psy4847 240 VGSLLDRITQKGTSQQKPTFKSLKKRNKPVDYFVLILEGRAEVVVGKENLVYEAGPFSYFGCQALTQNIGIAESPTNNSS 319 (396)
Q Consensus 240 ~e~vL~~Ll~~~~v~~~~~~~~LY~~g~~~d~f~LIL~Grv~V~~G~e~~~~E~gpfs~~G~~aL~~~~~~~~~~~~~~~ 319 (396)
++..+..|+.........+...||+.|++++++++|++|.|++..+. ......+|..+||+.++.... +
T Consensus 50 ~~~~~~~l~~~~~~~~~~~g~~i~~~G~~~~~~y~i~~G~v~~~~~~-~~~~~~~~G~~fGe~~~~~~~-----~----- 118 (154)
T 3pna_A 50 DDNERSDIFDAMFPVSFIAGETVIQQGDEGDNFYVIDQGEMDVYVNN-EWATSVGEGGSFGELALIYGT-----P----- 118 (154)
T ss_dssp CHHHHHHHHHHCEEEEECTTCEEECTTSCCCEEEEEEESCEEEEETT-EEEEEECTTCEECCHHHHHCC-----C-----
T ss_pred CHHHHHHHHHhceEEEECCCCEEEeCCCCCCeEEEEEecEEEEEECC-EEEEEecCCCEeeehHhhcCC-----C-----
Confidence 56678888888777777888899999999999999999999999844 456679999999999887510 0
Q ss_pred cccccCCCcccccccccCCcccccCcEEEEcCCeEEEEEeHHHHHHHHHHhhh
Q psy4847 320 AAQAYGGSLQSVNLDSILRYTFVPDYSVRATTEMFYVKIRRSFYLAAKRATLM 372 (396)
Q Consensus 320 ~~~~~~~s~~~~~~~~~~~~~~~PD~sv~~~~d~~~~~Itr~~Y~~al~as~~ 372 (396)
+ .++++|+++|.++.|++..|...+...-+
T Consensus 119 ---------------------~--~~~v~A~~~~~~~~i~~~~~~~ll~~~~~ 148 (154)
T 3pna_A 119 ---------------------R--AATVKAKTNVKLWGIDRDSYRRILMGSTL 148 (154)
T ss_dssp ---------------------C--SSEEEESSCEEEEEEEHHHHHHHTHHHHH
T ss_pred ---------------------c--ceEEEECcceEEEEEeHHHHHHHHHhChH
Confidence 0 24999999999999999999988766544
No 76
>3ocp_A PRKG1 protein; serine/threonine kinase, TF2I and IRAG, transferase; HET: CMP; 2.49A {Homo sapiens} PDB: 3od0_A* 3ogj_A*
Probab=98.41 E-value=6.3e-07 Score=75.25 Aligned_cols=95 Identities=16% Similarity=0.114 Sum_probs=78.5
Q ss_pred cHHHHHHHHhcCCCCCCCccccccccCcccceEEEEEeeEEEEEEcCCcceeecCCccchhhhhcccccccCCCCCCCCC
Q psy4847 240 VGSLLDRITQKGTSQQKPTFKSLKKRNKPVDYFVLILEGRAEVVVGKENLVYEAGPFSYFGCQALTQNIGIAESPTNNSS 319 (396)
Q Consensus 240 ~e~vL~~Ll~~~~v~~~~~~~~LY~~g~~~d~f~LIL~Grv~V~~G~e~~~~E~gpfs~~G~~aL~~~~~~~~~~~~~~~ 319 (396)
++..+..|..........+...||+.|++++++++|++|+|++.... ......+|..+||+.++... .+
T Consensus 35 ~~~~~~~l~~~~~~~~~~~g~~i~~~g~~~~~~y~i~~G~v~~~~~g-~~~~~~~~G~~fGe~~~l~~-----~~----- 103 (139)
T 3ocp_A 35 ELSQIQEIVDCMYPVEYGKDSCIIKEGDVGSLVYVMEDGKVEVTKEG-VKLCTMGPGKVFGELAILYN-----CT----- 103 (139)
T ss_dssp CHHHHHHHHHHCEEEEECSSCEEECTTSCCCEEEEEEECCEEEEETT-EEEEEECTTCEESCHHHHHC-----CC-----
T ss_pred CHHHHHHHHHhcEEEecCCCCEEEeCCCcCCEEEEEEeCEEEEEECC-EEEEEeCCCCEeccHHHHCC-----CC-----
Confidence 55678888888777777888899999999999999999999997633 46778999999999987751 00
Q ss_pred cccccCCCcccccccccCCcccccCcEEEEcCCeEEEEEeHHHHHHHHH
Q psy4847 320 AAQAYGGSLQSVNLDSILRYTFVPDYSVRATTEMFYVKIRRSFYLAAKR 368 (396)
Q Consensus 320 ~~~~~~~s~~~~~~~~~~~~~~~PD~sv~~~~d~~~~~Itr~~Y~~al~ 368 (396)
-.++++|.++|+++.|++..|...+.
T Consensus 104 -----------------------~~~~~~a~~~~~v~~i~~~~~~~l~~ 129 (139)
T 3ocp_A 104 -----------------------RTATVKTLVNVKLWAIDRQCFQTIMM 129 (139)
T ss_dssp -----------------------CSSEEEESSCEEEEEEEHHHHHHHHT
T ss_pred -----------------------cceEEEECcceEEEEEcHHHHHHHHh
Confidence 02389999999999999999988764
No 77
>2oz6_A Virulence factor regulator; winged helix, helix-turn-helix, transcription factor, CAMP-B proteins, CAMP receptor protein; HET: CMP; 2.80A {Pseudomonas aeruginosa} SCOP: a.4.5.4 b.82.3.2
Probab=98.37 E-value=1.1e-06 Score=78.37 Aligned_cols=98 Identities=15% Similarity=0.193 Sum_probs=79.0
Q ss_pred HHHHHHHHhcCCCCCCCccccccccCcccceEEEEEeeEEEEEE----cCCcceeecCCccchhhhhcccccccCCCCCC
Q psy4847 241 GSLLDRITQKGTSQQKPTFKSLKKRNKPVDYFVLILEGRAEVVV----GKENLVYEAGPFSYFGCQALTQNIGIAESPTN 316 (396)
Q Consensus 241 e~vL~~Ll~~~~v~~~~~~~~LY~~g~~~d~f~LIL~Grv~V~~----G~e~~~~E~gpfs~~G~~aL~~~~~~~~~~~~ 316 (396)
+..+..|+.+.......+...||+.|++++++++|++|.|++.. |++-...-.+|..+||+.++......
T Consensus 3 ~~~l~~l~~~~~~~~~~~g~~i~~~g~~~~~~y~i~~G~v~~~~~~~~G~~~~~~~~~~g~~~G~~~~~~~~~~------ 76 (207)
T 2oz6_A 3 LKHLDKLLAHCHRRRYTAKSTIIYAGDRCETLFFIIKGSVTILIEDDDGREMIIGYLNSGDFFGELGLFEKEGS------ 76 (207)
T ss_dssp HHHHHHHHHSSEEEEECTTCEEECTTSBCCEEEEEEESEEEEEEECTTSCEEEEEEEETTCEESCTTTCC----------
T ss_pred HHHHHHHHhhcceEEECCCCEEEcCCCCCCeEEEEEeCEEEEEEECCCCCEEEEEEcCCCCCcccHHHhcCCCC------
Confidence 45678888887777788889999999999999999999999986 67778889999999999887751000
Q ss_pred CCCcccccCCCcccccccccCCcccccCcEEEEcCCeEEEEEeHHHHHHHH
Q psy4847 317 NSSAAQAYGGSLQSVNLDSILRYTFVPDYSVRATTEMFYVKIRRSFYLAAK 367 (396)
Q Consensus 317 ~~~~~~~~~~s~~~~~~~~~~~~~~~PD~sv~~~~d~~~~~Itr~~Y~~al 367 (396)
.+-..++++|+++|.++.|++..+...+
T Consensus 77 -----------------------~~~~~~~~~A~~~~~v~~i~~~~~~~l~ 104 (207)
T 2oz6_A 77 -----------------------EQERSAWVRAKVECEVAEISYAKFRELS 104 (207)
T ss_dssp ------------------------CBCCSEEEESSCEEEEEEEHHHHHHHH
T ss_pred -----------------------CCCcceEEEECCcEEEEEECHHHHHHHH
Confidence 0011249999999999999999887654
No 78
>3gyd_A CNMP-BD protein, cyclic nucleotide-binding domain; nucleotide binding protein, structural genomics; HET: MSE CMP; 1.79A {Methylobacillus flagellatus KT}
Probab=98.37 E-value=6.7e-07 Score=79.74 Aligned_cols=96 Identities=17% Similarity=0.199 Sum_probs=80.8
Q ss_pred cHHHHHHHHhcCCCCCCCccccccccCcccceEEEEEeeEEEEEE----cCCcceeecCCccchhhhhcccccccCCCCC
Q psy4847 240 VGSLLDRITQKGTSQQKPTFKSLKKRNKPVDYFVLILEGRAEVVV----GKENLVYEAGPFSYFGCQALTQNIGIAESPT 315 (396)
Q Consensus 240 ~e~vL~~Ll~~~~v~~~~~~~~LY~~g~~~d~f~LIL~Grv~V~~----G~e~~~~E~gpfs~~G~~aL~~~~~~~~~~~ 315 (396)
++..+..|..........++..||+.|++++++++|++|+|++.. |++......+|..+||+.++.... +
T Consensus 51 ~~~~l~~l~~~~~~~~~~~ge~i~~~G~~~~~ly~I~~G~v~v~~~~~~g~~~~~~~~~~G~~fGe~~~l~~~-----~- 124 (187)
T 3gyd_A 51 SNEEVRYLCSYMQCYAAPRDCQLLTEGDPGDYLLLILTGEVNVIKDIPNKGIQTIAKVGAGAIIGEMSMIDGM-----P- 124 (187)
T ss_dssp CHHHHHHHHTTCEEEEECTTCEEECTTSCCCEEEEEEEEEEEEEEEETTTEEEEEEEEETTCEESHHHHHHCC-----C-
T ss_pred CHHHHHHHHHhcEEEEeCCCCEEEcCCCCCCeEEEEEeCEEEEEEECCCCCeEEEEEccCCCeeeeHHHhCCC-----C-
Confidence 567788888887777778888999999999999999999999987 556788899999999999987510 0
Q ss_pred CCCCcccccCCCcccccccccCCcccccCcEEEEcCCeEEEEEeHHHHHHHHH
Q psy4847 316 NNSSAAQAYGGSLQSVNLDSILRYTFVPDYSVRATTEMFYVKIRRSFYLAAKR 368 (396)
Q Consensus 316 ~~~~~~~~~~~s~~~~~~~~~~~~~~~PD~sv~~~~d~~~~~Itr~~Y~~al~ 368 (396)
-.++|+|.++|+++.|++..+...+.
T Consensus 125 ---------------------------~~~~v~A~~~~~v~~i~~~~~~~l~~ 150 (187)
T 3gyd_A 125 ---------------------------RSASCVASLPTDFAVLSRDALYQLLA 150 (187)
T ss_dssp ---------------------------CSSEEEEEEEEEEEEEEHHHHHHHHH
T ss_pred ---------------------------eeEEEEECCCeEEEEEcHHHHHHHHH
Confidence 02499999999999999999987654
No 79
>2ptm_A Hyperpolarization-activated (IH) channel; ION channel, cyclic nucleotide binding domain, C-linker, CAM SPHCN1, HCN; HET: CMP; 1.93A {Strongylocentrotus purpuratus}
Probab=98.36 E-value=1e-06 Score=78.82 Aligned_cols=96 Identities=13% Similarity=0.089 Sum_probs=79.0
Q ss_pred cHHHHHHHHhcCCCCCCCccccccccCcccceEEEEEeeEEEEEEcCCcceeecCCccchhhhhcccccccCCCCCCCCC
Q psy4847 240 VGSLLDRITQKGTSQQKPTFKSLKKRNKPVDYFVLILEGRAEVVVGKENLVYEAGPFSYFGCQALTQNIGIAESPTNNSS 319 (396)
Q Consensus 240 ~e~vL~~Ll~~~~v~~~~~~~~LY~~g~~~d~f~LIL~Grv~V~~G~e~~~~E~gpfs~~G~~aL~~~~~~~~~~~~~~~ 319 (396)
++..+..|..........++..||+.|++++.+++|++|+|+|...........||.++||+.++... . +
T Consensus 83 ~~~~l~~l~~~~~~~~~~~ge~I~~~G~~~~~ly~I~~G~v~~~~~~g~~~~~l~~G~~fGe~~~~~~--~---~----- 152 (198)
T 2ptm_A 83 DSNFVTRVVTLLEFEVFQPADYVIQEGTFGDRMFFIQQGIVDIIMSDGVIATSLSDGSYFGEICLLTR--E---R----- 152 (198)
T ss_dssp CHHHHHHHHHHCEEEEECTTCEEECTTSCCSEEEEEEECCEEEECTTSCEEEEECTTCEESCHHHHHS--S---C-----
T ss_pred CHHHHHHHHHhccceeeCCCCEEEECCCcCcEEEEEEeCEEEEEecCCeEEEEecCCCEechHHHcCC--C---c-----
Confidence 56777888877666667788889999999999999999999999744447788999999999988751 0 0
Q ss_pred cccccCCCcccccccccCCcccccCcEEEEcCCeEEEEEeHHHHHHHHH
Q psy4847 320 AAQAYGGSLQSVNLDSILRYTFVPDYSVRATTEMFYVKIRRSFYLAAKR 368 (396)
Q Consensus 320 ~~~~~~~s~~~~~~~~~~~~~~~PD~sv~~~~d~~~~~Itr~~Y~~al~ 368 (396)
..++|+|.++|+.+.|+|..+...+.
T Consensus 153 -----------------------~~~~~~a~~~~~l~~i~~~~f~~ll~ 178 (198)
T 2ptm_A 153 -----------------------RVASVKCETYCTLFSLSVQHFNQVLD 178 (198)
T ss_dssp -----------------------CSSEEEESSCEEEEEEEHHHHHHHHH
T ss_pred -----------------------cceEEEEeeEEEEEEEeHHHHHHHHH
Confidence 12499999999999999999988765
No 80
>3of1_A CAMP-dependent protein kinase regulatory subunit; cyclic nucleotide binding domain, evolution, PKA signaling, transfer; HET: CMP; 2.21A {Saccharomyces cerevisiae}
Probab=98.36 E-value=8.1e-07 Score=81.17 Aligned_cols=96 Identities=15% Similarity=0.155 Sum_probs=80.2
Q ss_pred cHHHHHHHHhcCCCCCCCccccccccCcccceEEEEEeeEEEEEEcCCcceeecCCccchhhhhcccccccCCCCCCCCC
Q psy4847 240 VGSLLDRITQKGTSQQKPTFKSLKKRNKPVDYFVLILEGRAEVVVGKENLVYEAGPFSYFGCQALTQNIGIAESPTNNSS 319 (396)
Q Consensus 240 ~e~vL~~Ll~~~~v~~~~~~~~LY~~g~~~d~f~LIL~Grv~V~~G~e~~~~E~gpfs~~G~~aL~~~~~~~~~~~~~~~ 319 (396)
++..+.+|..........++..||+.|+++++|++|++|.|+|....++.....+|..+||+.+|... .++
T Consensus 137 ~~~~l~~l~~~~~~~~~~~g~~i~~~g~~~~~~y~I~~G~v~v~~~~~~~~~~l~~g~~fGe~~~~~~--~~~------- 207 (246)
T 3of1_A 137 TTYDRAKLADALDTKIYQPGETIIREGDQGENFYLIEYGAVDVSKKGQGVINKLKDHDYFGEVALLND--LPR------- 207 (246)
T ss_dssp CHHHHHHHHHTCEEEEECTTCEEECTTSBCCEEEEEEECEEEEEETTTEEEEEEETTCEECHHHHHHT--CBC-------
T ss_pred CHHHHHHHHHhhheEEeCCCCEEEeCCCcCCEEEEEEecEEEEEEcCCceEEEcCCCCcccHHHHhCC--CCc-------
Confidence 34557777777666667788899999999999999999999999988778889999999999998761 100
Q ss_pred cccccCCCcccccccccCCcccccCcEEEEcCCeEEEEEeHHHHHHHHH
Q psy4847 320 AAQAYGGSLQSVNLDSILRYTFVPDYSVRATTEMFYVKIRRSFYLAAKR 368 (396)
Q Consensus 320 ~~~~~~~s~~~~~~~~~~~~~~~PD~sv~~~~d~~~~~Itr~~Y~~al~ 368 (396)
.++|+|.++|+.+.|+|..|.+.+.
T Consensus 208 ------------------------~~~v~a~~~~~~~~i~~~~f~~ll~ 232 (246)
T 3of1_A 208 ------------------------QATVTATKRTKVATLGKSGFQRLLG 232 (246)
T ss_dssp ------------------------SSEEEESSCEEEEEEEHHHHHHHCT
T ss_pred ------------------------ccEEEECCCEEEEEEeHHHHHHHhc
Confidence 2399999999999999999988764
No 81
>1vp6_A CNBD, cyclic-nucleotide binding domain of mesorhizobium LOTI CNG potassium channel; dimer helical bundle beta barrel core with cyclic AMP bound; HET: CMP; 1.70A {Mesorhizobium loti} SCOP: b.82.3.2 PDB: 3cl1_A* 2k0g_A* 2kxl_A 3clp_A* 1u12_A 3co2_A
Probab=98.33 E-value=1.1e-06 Score=73.28 Aligned_cols=93 Identities=20% Similarity=0.272 Sum_probs=76.4
Q ss_pred cHHHHHHHHhcCCCCCCCccccccccCcccceEEEEEeeEEEEEEcCCcceeecCCccchhhhhcccccccCCCCCCCCC
Q psy4847 240 VGSLLDRITQKGTSQQKPTFKSLKKRNKPVDYFVLILEGRAEVVVGKENLVYEAGPFSYFGCQALTQNIGIAESPTNNSS 319 (396)
Q Consensus 240 ~e~vL~~Ll~~~~v~~~~~~~~LY~~g~~~d~f~LIL~Grv~V~~G~e~~~~E~gpfs~~G~~aL~~~~~~~~~~~~~~~ 319 (396)
++..+..|+.........++..||+.|++++++++|++|+|++.... ....+|..+||+.++.... +
T Consensus 23 ~~~~~~~l~~~~~~~~~~~g~~i~~~g~~~~~~y~i~~G~v~~~~~~---~~~~~~G~~~G~~~~~~~~-----~----- 89 (138)
T 1vp6_A 23 GPAVLVEIVRALRARTVPAGAVICRIGEPGDRMFFVVEGSVSVATPN---PVELGPGAFFGEMALISGE-----P----- 89 (138)
T ss_dssp CHHHHHHHHHHCEEEEECTTCEEECTTSCCCEEEEEEESCEEECSSS---CEEECTTCEECHHHHHHCC-----C-----
T ss_pred CHHHHHHHHHhhcEEEeCCCCEEEeCCCCcceEEEEEeeEEEEEeCC---cceECCCCEeeehHhccCC-----C-----
Confidence 56678888888777777888899999999999999999999998754 3568999999999877510 0
Q ss_pred cccccCCCcccccccccCCcccccCcEEEEcCCeEEEEEeHHHHHHHHH
Q psy4847 320 AAQAYGGSLQSVNLDSILRYTFVPDYSVRATTEMFYVKIRRSFYLAAKR 368 (396)
Q Consensus 320 ~~~~~~~s~~~~~~~~~~~~~~~PD~sv~~~~d~~~~~Itr~~Y~~al~ 368 (396)
-.++++|.++|+++.|++..+...+.
T Consensus 90 -----------------------~~~~~~a~~~~~~~~i~~~~~~~l~~ 115 (138)
T 1vp6_A 90 -----------------------RSATVSAATTVSLLSLHSADFQMLCS 115 (138)
T ss_dssp -----------------------CSSCEEESSSEEEEEEEHHHHHHHHH
T ss_pred -----------------------ceeEEEECCCEEEEEECHHHHHHHHH
Confidence 02589999999999999999887654
No 82
>3iwz_A CAP-like, catabolite activation-like protein; XCC, pathogenicity, CRP, CLP, C-DI-GMP receptor, quorum SENS binding, transcription; 2.30A {Xanthomonas campestris PV}
Probab=98.32 E-value=1.8e-06 Score=78.26 Aligned_cols=97 Identities=12% Similarity=0.179 Sum_probs=81.3
Q ss_pred cHHHHHHHHhcCCCCCCCccccccccCcccceEEEEEeeEEEEEE----cCCcceeecCCccchhhhhcccccccCCCCC
Q psy4847 240 VGSLLDRITQKGTSQQKPTFKSLKKRNKPVDYFVLILEGRAEVVV----GKENLVYEAGPFSYFGCQALTQNIGIAESPT 315 (396)
Q Consensus 240 ~e~vL~~Ll~~~~v~~~~~~~~LY~~g~~~d~f~LIL~Grv~V~~----G~e~~~~E~gpfs~~G~~aL~~~~~~~~~~~ 315 (396)
++..+..|+.+......+++..||+.|++++++++|++|.|++.. |++-...-.||..+||+.++....
T Consensus 23 ~~~~~~~l~~~~~~~~~~~g~~i~~~g~~~~~~y~i~~G~v~~~~~~~~G~~~~~~~~~~g~~~G~~~~~~~~------- 95 (230)
T 3iwz_A 23 DAGTIERFLAHSHRRRYPTRTDVFRPGDPAGTLYYVISGSVSIIAEEDDDRELVLGYFGSGEFVGEMGLFIES------- 95 (230)
T ss_dssp CHHHHHHHHTTSEEEEECTTCEEECTTSBCCEEEEEEESCEEEEEECTTSCEEEEEEECTTCEESCGGGTSCC-------
T ss_pred CHHHHHHHHHhCeEEEeCCCCEEECCCCCCCeEEEEEeeEEEEEEECCCCCEEEEEEecCCCEEEehhhhcCC-------
Confidence 456688888887777778888999999999999999999999986 778788899999999999887510
Q ss_pred CCCCcccccCCCcccccccccCCcccccCcEEEEcCCeEEEEEeHHHHHHHHH
Q psy4847 316 NNSSAAQAYGGSLQSVNLDSILRYTFVPDYSVRATTEMFYVKIRRSFYLAAKR 368 (396)
Q Consensus 316 ~~~~~~~~~~~s~~~~~~~~~~~~~~~PD~sv~~~~d~~~~~Itr~~Y~~al~ 368 (396)
.| ..++++|.++|.++.|++..+...+.
T Consensus 96 ---~~----------------------~~~~~~a~~~~~v~~i~~~~~~~l~~ 123 (230)
T 3iwz_A 96 ---DT----------------------REVILRTRTQCELAEISYERLQQLFQ 123 (230)
T ss_dssp ---SB----------------------CCSEEEESSCEEEEEEEHHHHHHHHH
T ss_pred ---CC----------------------ceeEEEEcCcEEEEEEeHHHHHHHHH
Confidence 00 12489999999999999999887665
No 83
>3ryp_A Catabolite gene activator; CAMP receptor protein (CRP), allostery, DNA binding cyclic A transcription regulator; HET: CMP; 1.60A {Escherichia coli} PDB: 2cgp_A* 3hif_A 1g6n_A* 3ryr_A* 1i5z_A* 1j59_A* 1lb2_A* 1run_A* 1zrc_A* 1zrd_A* 1zre_A* 1zrf_A* 2gzw_A* 2wc2_A 3iyd_G* 3n4m_A* 3qop_A* 3rdi_A* 3rou_A* 3rpq_A* ...
Probab=98.32 E-value=1.6e-06 Score=77.55 Aligned_cols=97 Identities=16% Similarity=0.171 Sum_probs=80.1
Q ss_pred cHHHHHHHHhcCCCCCCCccccccccCcccceEEEEEeeEEEEEE----cCCcceeecCCccchhhhhcccccccCCCCC
Q psy4847 240 VGSLLDRITQKGTSQQKPTFKSLKKRNKPVDYFVLILEGRAEVVV----GKENLVYEAGPFSYFGCQALTQNIGIAESPT 315 (396)
Q Consensus 240 ~e~vL~~Ll~~~~v~~~~~~~~LY~~g~~~d~f~LIL~Grv~V~~----G~e~~~~E~gpfs~~G~~aL~~~~~~~~~~~ 315 (396)
++..+..|..+.......+...||+.|++++++++|++|.|++.. |++-...-.||..+||+.++....
T Consensus 8 ~~~~l~~l~~~~~~~~~~~g~~i~~~g~~~~~~y~i~~G~v~~~~~~~~g~~~~~~~~~~g~~~G~~~~~~~~------- 80 (210)
T 3ryp_A 8 TDPTLEWFLSHCHIHKYPSKSTLIHQGEKAETLYYIVKGSVAVLIKDEEGKEMILSYLNQGDFIGELGLFEEG------- 80 (210)
T ss_dssp CCHHHHHHHTTSEEEEECTTCEEECTTSBCCEEEEEEESEEEEEEECTTCCEEEEEEEETTCEESCTTTTSTT-------
T ss_pred CHHHHHHHHHhcEEEEeCCCCEEECCCCCCCeEEEEEeCEEEEEEECCCCCEEEEEEcCCCCEeeeHHHhcCC-------
Confidence 456688888888777788888999999999999999999999986 667788889999999999877510
Q ss_pred CCCCcccccCCCcccccccccCCcccccCcEEEEcCCeEEEEEeHHHHHHHHH
Q psy4847 316 NNSSAAQAYGGSLQSVNLDSILRYTFVPDYSVRATTEMFYVKIRRSFYLAAKR 368 (396)
Q Consensus 316 ~~~~~~~~~~~s~~~~~~~~~~~~~~~PD~sv~~~~d~~~~~Itr~~Y~~al~ 368 (396)
--..++++|.++|.++.|++..+...+.
T Consensus 81 -------------------------~~~~~~~~a~~~~~v~~i~~~~~~~l~~ 108 (210)
T 3ryp_A 81 -------------------------QERSAWVRAKTACEVAEISYKKFRQLIQ 108 (210)
T ss_dssp -------------------------CBCSSEEEESSCEEEEEEEHHHHHHHHH
T ss_pred -------------------------CCceEEEEECCcEEEEEEcHHHHHHHHH
Confidence 0012489999999999999999877653
No 84
>4ev0_A Transcription regulator, CRP family; CAMP binding, winged helix-turn-helix motif, DNA binding, transcription activator; HET: CMP; 2.40A {Thermus thermophilus}
Probab=98.31 E-value=1.7e-06 Score=77.69 Aligned_cols=96 Identities=20% Similarity=0.160 Sum_probs=80.3
Q ss_pred cHHHHHHHHhcCCCCCCCccccccccCcccceEEEEEeeEEEEEE----cCCcceeecCCccchhhhhcccccccCCCCC
Q psy4847 240 VGSLLDRITQKGTSQQKPTFKSLKKRNKPVDYFVLILEGRAEVVV----GKENLVYEAGPFSYFGCQALTQNIGIAESPT 315 (396)
Q Consensus 240 ~e~vL~~Ll~~~~v~~~~~~~~LY~~g~~~d~f~LIL~Grv~V~~----G~e~~~~E~gpfs~~G~~aL~~~~~~~~~~~ 315 (396)
++..+..|..+......+++..||+.|++++++++|++|.|++.. |++-.....||..+||+.++....
T Consensus 11 ~~~~~~~l~~~~~~~~~~~g~~i~~~g~~~~~~y~i~~G~v~~~~~~~~g~~~~~~~~~~g~~~G~~~~~~~~------- 83 (216)
T 4ev0_A 11 APEEVDLALSYFQRRLYPQGKPIFYQGDLGQALYLVASGKVRLFRTHLGGQERTLALLGPGELFGEMSLLDEG------- 83 (216)
T ss_dssp CHHHHHHHHTTCEEEEECTTCEEECTTCBCCEEEEEEESCEEEEEECSSSCEEEEEEECTTCEECHHHHHHCC-------
T ss_pred CHHHHHHHHHhheEEEeCCCCEEEeCCCCCCEEEEEEeCEEEEEEECCCCCEEEEEEecCCCEEeehhhcCCC-------
Confidence 456678888887777778888999999999999999999999986 677788999999999998877510
Q ss_pred CCCCcccccCCCcccccccccCCcccccCcEEEEcCCeEEEEEeHHHHHHHHH
Q psy4847 316 NNSSAAQAYGGSLQSVNLDSILRYTFVPDYSVRATTEMFYVKIRRSFYLAAKR 368 (396)
Q Consensus 316 ~~~~~~~~~~~s~~~~~~~~~~~~~~~PD~sv~~~~d~~~~~Itr~~Y~~al~ 368 (396)
| ..++++|.++|+++.|++..+...+.
T Consensus 84 ----~----------------------~~~~~~a~~~~~v~~i~~~~~~~l~~ 110 (216)
T 4ev0_A 84 ----E----------------------RSASAVAVEDTELLALFREDYLALIR 110 (216)
T ss_dssp ----B----------------------CSSEEEESSSEEEEEEEHHHHHHHHH
T ss_pred ----C----------------------cceEEEEcCCEEEEEEcHHHHHHHHH
Confidence 0 12499999999999999999887654
No 85
>3kcc_A Catabolite gene activator; helix-turn-helix, CAMP, CAMP-binding, DNA-binding nucleotide-binding, transcription, transcription regulation; HET: CMP; 1.66A {Escherichia coli}
Probab=98.29 E-value=1.8e-06 Score=80.83 Aligned_cols=97 Identities=16% Similarity=0.171 Sum_probs=80.7
Q ss_pred cHHHHHHHHhcCCCCCCCccccccccCcccceEEEEEeeEEEEEE----cCCcceeecCCccchhhhhcccccccCCCCC
Q psy4847 240 VGSLLDRITQKGTSQQKPTFKSLKKRNKPVDYFVLILEGRAEVVV----GKENLVYEAGPFSYFGCQALTQNIGIAESPT 315 (396)
Q Consensus 240 ~e~vL~~Ll~~~~v~~~~~~~~LY~~g~~~d~f~LIL~Grv~V~~----G~e~~~~E~gpfs~~G~~aL~~~~~~~~~~~ 315 (396)
++..+..|+.........+...||+.|++++++++|++|.|++.. |++-.....||..+||+.++....
T Consensus 58 ~~~~l~~l~~~~~~~~~~~ge~i~~~G~~~~~~y~I~~G~v~~~~~~~~G~e~~~~~~~~G~~~Ge~~~~~~~------- 130 (260)
T 3kcc_A 58 TDPTLEWFLSHCHIHKYPSKSTLIHQGEKAETLYYIVKGSVAVLIKDEEGKEMILSYLNQGDFIGELGLFEEG------- 130 (260)
T ss_dssp -CHHHHHHHTTSEEEEECTTCEEECTTCBCCEEEEEEECEEEEEEECTTCCEEEEEEEETTCEESCTTTTSTT-------
T ss_pred CHHHHHHHHhhCEEEEECCCCEEECCCCcCCeEEEEEeCEEEEEEECCCCCEEEEEEcCCCCEEeehHHhCCC-------
Confidence 556788888888888888889999999999999999999999986 677788899999999999877510
Q ss_pred CCCCcccccCCCcccccccccCCcccccCcEEEEcCCeEEEEEeHHHHHHHHH
Q psy4847 316 NNSSAAQAYGGSLQSVNLDSILRYTFVPDYSVRATTEMFYVKIRRSFYLAAKR 368 (396)
Q Consensus 316 ~~~~~~~~~~~s~~~~~~~~~~~~~~~PD~sv~~~~d~~~~~Itr~~Y~~al~ 368 (396)
--..++++|+++|.++.|++..+...+.
T Consensus 131 -------------------------~~~~~~~~A~~~~~l~~i~~~~~~~l~~ 158 (260)
T 3kcc_A 131 -------------------------QERSAWVRAKTACEVAEISYKKFRQLIQ 158 (260)
T ss_dssp -------------------------CBCCSEEEESSCEEEEEEEHHHHHHHHH
T ss_pred -------------------------CCCceEEEECCCeEEEEEcHHHHHHHHH
Confidence 0012489999999999999999877654
No 86
>3bpz_A Potassium/sodium hyperpolarization-activated cyclic nucleotide-gated channel 2; CNBD, C-linker, pacemaker, HCN, HCN2, CAP, PKA, CAMP, ION channel; HET: CMP; 1.65A {Mus musculus} PDB: 3ffq_A 1q3e_A* 1q43_A* 1q5o_A* 3u10_A* 2q0a_A* 3etq_A* 3u11_A* 3otf_A* 3u0z_A*
Probab=98.27 E-value=2.2e-06 Score=76.94 Aligned_cols=95 Identities=17% Similarity=0.057 Sum_probs=76.4
Q ss_pred cHHHHHHHHhcCCCCCCCccccccccCcccceEEEEEeeEEEEEEcCCcceeecCCccchhhhhcccccccCCCCCCCCC
Q psy4847 240 VGSLLDRITQKGTSQQKPTFKSLKKRNKPVDYFVLILEGRAEVVVGKENLVYEAGPFSYFGCQALTQNIGIAESPTNNSS 319 (396)
Q Consensus 240 ~e~vL~~Ll~~~~v~~~~~~~~LY~~g~~~d~f~LIL~Grv~V~~G~e~~~~E~gpfs~~G~~aL~~~~~~~~~~~~~~~ 319 (396)
++..+..|..........++..||+.|++++.+++|++|.|+|.. .++-....||.++||+.++... .
T Consensus 84 ~~~~l~~l~~~~~~~~~~~ge~I~~~g~~~~~ly~I~~G~v~v~~-~~g~~~~l~~G~~fGe~~~~~~--~--------- 151 (202)
T 3bpz_A 84 DPNFVTAMLTKLKFEVFQPGDYIIREGTIGKKMYFIQHGVVSVLT-KGNKEMKLSDGSYFGEICLLTR--G--------- 151 (202)
T ss_dssp CHHHHHHHHHHCEEEEECTTCEEECTTSBCCEEEEEEECEEEEEC-TTSCCEEEETTCEECHHHHHHC--S---------
T ss_pred CHHHHHHHHHhCCceEECCCCEEEECCCcCCeEEEEeccEEEEEE-CCCeEEEEcCCCEeccHHHhcC--C---------
Confidence 566777788776666677788899999999999999999999976 3333456899999999888751 0
Q ss_pred cccccCCCcccccccccCCcccccCcEEEEcCCeEEEEEeHHHHHHHHH
Q psy4847 320 AAQAYGGSLQSVNLDSILRYTFVPDYSVRATTEMFYVKIRRSFYLAAKR 368 (396)
Q Consensus 320 ~~~~~~~s~~~~~~~~~~~~~~~PD~sv~~~~d~~~~~Itr~~Y~~al~ 368 (396)
| ..++|+|.++|.++.|+|..+...+.
T Consensus 152 ~----------------------~~~~v~a~~~~~l~~i~~~~f~~ll~ 178 (202)
T 3bpz_A 152 R----------------------RTASVRADTYCRLYSLSVDNFNEVLE 178 (202)
T ss_dssp B----------------------CSSEEEESSCEEEEEEEHHHHHHHHH
T ss_pred C----------------------cccEEEEeeEEEEEEEEHHHHHHHHH
Confidence 0 12499999999999999999987764
No 87
>2gau_A Transcriptional regulator, CRP/FNR family; structural genomics, porphyromona gingivalis, PSI, protein structure initiative; 1.90A {Porphyromonas gingivalis} SCOP: a.4.5.4 b.82.3.2
Probab=98.27 E-value=2.3e-06 Score=77.87 Aligned_cols=96 Identities=9% Similarity=0.060 Sum_probs=80.4
Q ss_pred cHHHHHHHHhcCCCCCCCccccccccCcccceEEEEEeeEEEEEE----cCCcceeecCCccchhhhhcccccccCCCCC
Q psy4847 240 VGSLLDRITQKGTSQQKPTFKSLKKRNKPVDYFVLILEGRAEVVV----GKENLVYEAGPFSYFGCQALTQNIGIAESPT 315 (396)
Q Consensus 240 ~e~vL~~Ll~~~~v~~~~~~~~LY~~g~~~d~f~LIL~Grv~V~~----G~e~~~~E~gpfs~~G~~aL~~~~~~~~~~~ 315 (396)
++..+..|..........++..||+.|++++++++|++|.|++.. |++......+|..+||+.++.... +
T Consensus 22 ~~~~~~~l~~~~~~~~~~~g~~i~~~g~~~~~~y~v~~G~v~~~~~~~~g~~~~~~~~~~G~~~G~~~~~~~~-----~- 95 (232)
T 2gau_A 22 NEEERELLDKEIQPFPCKKASTVFSEGDIPNNLFYLYEGKIKILREGVYGRFHISRIVKPGQFFGMRPYFAEE-----T- 95 (232)
T ss_dssp CHHHHHHHHHHCEEEEECTTCEEECTTCCCCEEEEEEESCEEEEC-----CCCEEEEECTTCEESHHHHHHTS-----C-
T ss_pred CHHHHHHHHhhCeEEEECCCCEEEeCCCCCCeEEEEEeCEEEEEEECCCCCEEEEEEeCCCCEeeeehhhCCC-----C-
Confidence 456688888887777788889999999999999999999999984 899999999999999999887510 0
Q ss_pred CCCCcccccCCCcccccccccCCcccccCcEEEEcCCeEEEEEeHHHHHHHHH
Q psy4847 316 NNSSAAQAYGGSLQSVNLDSILRYTFVPDYSVRATTEMFYVKIRRSFYLAAKR 368 (396)
Q Consensus 316 ~~~~~~~~~~~s~~~~~~~~~~~~~~~PD~sv~~~~d~~~~~Itr~~Y~~al~ 368 (396)
..++++|+++|.++.|++..+...+.
T Consensus 96 ---------------------------~~~~~~A~~~~~v~~i~~~~~~~l~~ 121 (232)
T 2gau_A 96 ---------------------------CSSTAIAVENSKVLAIPVEAIEALLK 121 (232)
T ss_dssp ---------------------------CSSEEEESSCEEEEEEEHHHHHHHHH
T ss_pred ---------------------------cceEEEEecceEEEEEEHHHHHHHHH
Confidence 12499999999999999999877654
No 88
>3dn7_A Cyclic nucleotide binding regulatory protein; structural genomics, APC88869, cyclic nucleotide binding REG protein, PSI-2; 1.80A {Cytophaga hutchinsonii}
Probab=98.26 E-value=2.5e-06 Score=75.47 Aligned_cols=96 Identities=9% Similarity=0.012 Sum_probs=79.6
Q ss_pred cHHHHHHHHhcCCCCCCCccccccccCcccceEEEEEeeEEEEEE----cCCcceeecCCccchhhh-hcccccccCCCC
Q psy4847 240 VGSLLDRITQKGTSQQKPTFKSLKKRNKPVDYFVLILEGRAEVVV----GKENLVYEAGPFSYFGCQ-ALTQNIGIAESP 314 (396)
Q Consensus 240 ~e~vL~~Ll~~~~v~~~~~~~~LY~~g~~~d~f~LIL~Grv~V~~----G~e~~~~E~gpfs~~G~~-aL~~~~~~~~~~ 314 (396)
++..+..|.........+++..||+.|++++++++|++|+|++.. |+|-...-.+|..+||+. ++....
T Consensus 19 ~~~~~~~l~~~~~~~~~~~g~~l~~~G~~~~~~y~i~~G~v~~~~~~~~G~e~~~~~~~~g~~~ge~~~~~~~~------ 92 (194)
T 3dn7_A 19 TDEDAGTLSAFFQLKKVRKKETLLKTGEICRINYFVVKGCLRLFFIDEKGIEQTTQFAIENWWLSDYMAFQKQQ------ 92 (194)
T ss_dssp CHHHHHHHHTTCEEEEECTTCEEECTTSBCCEEEEEEESEEEEEEECTTSCEEEEEEEETTCEECCHHHHHHTC------
T ss_pred CHHHHHHHHHhCEEEEEcCCCEEECCCCeeeEEEEeecCeEEEEEECCCCCEEEEEEccCCcEEeehHHHhcCC------
Confidence 556688888887777788889999999999999999999999986 788888889999999965 655410
Q ss_pred CCCCCcccccCCCcccccccccCCcccccCcEEEEcCCeEEEEEeHHHHHHHHH
Q psy4847 315 TNNSSAAQAYGGSLQSVNLDSILRYTFVPDYSVRATTEMFYVKIRRSFYLAAKR 368 (396)
Q Consensus 315 ~~~~~~~~~~~~s~~~~~~~~~~~~~~~PD~sv~~~~d~~~~~Itr~~Y~~al~ 368 (396)
| ..++++|++||.++.|++..+...+.
T Consensus 93 -----~----------------------~~~~~~a~~~~~v~~i~~~~~~~l~~ 119 (194)
T 3dn7_A 93 -----P----------------------ADFYIQSVENCELLSITYTEQENLFE 119 (194)
T ss_dssp -----B----------------------CSSEEEESSCEEEEEEEHHHHHHHHH
T ss_pred -----C----------------------CceEEEEECCEEEEEEeHHHHHHHHH
Confidence 0 12499999999999999999887654
No 89
>3tnp_B CAMP-dependent protein kinase type II-beta regula subunit; PKA RIIB tetrameric holoenzyme, transferase; HET: SEP TPO; 2.30A {Mus musculus} PDB: 3tnq_A* 1cx4_A* 2qvs_B*
Probab=98.26 E-value=2.5e-06 Score=86.06 Aligned_cols=102 Identities=16% Similarity=0.084 Sum_probs=84.0
Q ss_pred cHHHHHHHHhcCCCCCCCccccccccCcccceEEEEEeeEEEEEE---cCCcceeecCCccchhhhhcccccccCCCCCC
Q psy4847 240 VGSLLDRITQKGTSQQKPTFKSLKKRNKPVDYFVLILEGRAEVVV---GKENLVYEAGPFSYFGCQALTQNIGIAESPTN 316 (396)
Q Consensus 240 ~e~vL~~Ll~~~~v~~~~~~~~LY~~g~~~d~f~LIL~Grv~V~~---G~e~~~~E~gpfs~~G~~aL~~~~~~~~~~~~ 316 (396)
++..+..|+.........+...||+.|.++|+|++|++|.|+|.. |++......+|..+||+.+|.... ++
T Consensus 157 ~~~~l~~l~~~~~~~~~~~Ge~I~~qGd~~d~~YiI~sG~v~v~~~~~G~~~~v~~l~~G~~fGe~all~~~--pr---- 230 (416)
T 3tnp_B 157 DPEQMSQVLDAMFEKLVKEGEHVIDQGDDGDNFYVIDRGTFDIYVKCDGVGRCVGNYDNRGSFGELALMYNT--PK---- 230 (416)
T ss_dssp CHHHHHHHHHHCEEEEECTTCEEECTTSCCCEEEEEEECEEEEEEECSSCEEEEEEEESCCEECGGGGTSCC--CC----
T ss_pred CHHHHHHHHHhcEEEEeCCCCEEEeCCCCCceEEEEEeeEEEEEEecCCCEEEEEEecCCCEEeeHHHhcCC--Cc----
Confidence 456688888877777777888999999999999999999999987 556667889999999999988621 00
Q ss_pred CCCcccccCCCcccccccccCCcccccCcEEEEcCCeEEEEEeHHHHHHHHHHhhhhh
Q psy4847 317 NSSAAQAYGGSLQSVNLDSILRYTFVPDYSVRATTEMFYVKIRRSFYLAAKRATLMEK 374 (396)
Q Consensus 317 ~~~~~~~~~~s~~~~~~~~~~~~~~~PD~sv~~~~d~~~~~Itr~~Y~~al~as~~~~ 374 (396)
.+||+|.++|+++.|+|..|...++.....+
T Consensus 231 ---------------------------~atv~A~~d~~l~~i~r~~f~~ll~~~~~~~ 261 (416)
T 3tnp_B 231 ---------------------------AATITATSPGALWGLDRVTFRRIIVKNNAKK 261 (416)
T ss_dssp ---------------------------SSEEEESSSEEEEEEEHHHHHHHHHHHHHHH
T ss_pred ---------------------------ccEEEEccCeEEEEEeehhhhhhhhcchhHH
Confidence 1389999999999999999999987665443
No 90
>2d93_A RAP guanine nucleotide exchange factor 6; CNMP_binding domain, PDZ domain containing guanine nucleotide exchange factor 2, PDZ-GEF2, RA-GEF-2; NMR {Homo sapiens}
Probab=98.25 E-value=8.9e-07 Score=73.95 Aligned_cols=94 Identities=14% Similarity=0.045 Sum_probs=74.9
Q ss_pred cHHHHHHHHhcCCCCCCC-ccccccccCcccceEEEEEeeEEEEEEcCCcceeecCCccchhhhhcccccccCCCCCCCC
Q psy4847 240 VGSLLDRITQKGTSQQKP-TFKSLKKRNKPVDYFVLILEGRAEVVVGKENLVYEAGPFSYFGCQALTQNIGIAESPTNNS 318 (396)
Q Consensus 240 ~e~vL~~Ll~~~~v~~~~-~~~~LY~~g~~~d~f~LIL~Grv~V~~G~e~~~~E~gpfs~~G~~aL~~~~~~~~~~~~~~ 318 (396)
++..+..|..+....... +...||+.|++++++++|++|+|++...... ....+|..+||+.++....
T Consensus 28 ~~~~~~~l~~~~~~~~~~~~g~~i~~~g~~~~~~y~i~~G~v~~~~~~g~-~~~l~~G~~fG~~~~~~~~---------- 96 (134)
T 2d93_A 28 TMSVRRELCSVMIFEVVEQAGAIILEDGQELDSWYVILNGTVEISHPDGK-VENLFMGNSFGITPTLDKQ---------- 96 (134)
T ss_dssp CHHHHHHHTTTEEEEEECSSSCEEECTTCEECEEEECCBSCEEEECSSSC-EEEECTTCEESCCSSSCCE----------
T ss_pred CHHHHHHHHHhheEEEecCCCCEEEeCCCCCCeEEEEEeCEEEEEcCCCc-EEEecCCCccChhHhcCCC----------
Confidence 566788888877777777 8889999999999999999999999873222 2668899999998877510
Q ss_pred CcccccCCCcccccccccCCcccccCcEE-EEcCCeEEEEEeHHHHHHHH
Q psy4847 319 SAAQAYGGSLQSVNLDSILRYTFVPDYSV-RATTEMFYVKIRRSFYLAAK 367 (396)
Q Consensus 319 ~~~~~~~~s~~~~~~~~~~~~~~~PD~sv-~~~~d~~~~~Itr~~Y~~al 367 (396)
| ..+++ +|.++|+++.|++..|...+
T Consensus 97 -~----------------------~~~~~~~a~~~~~~~~i~~~~~~~l~ 123 (134)
T 2d93_A 97 -Y----------------------MHGIVRTKVDDCQFVCIAQQDYWRIL 123 (134)
T ss_dssp -E----------------------CCSEEEESSSSEEEEEEEHHHHHHHS
T ss_pred -c----------------------ceeEEEEEecceEEEEEeHHHHHHHH
Confidence 0 01377 99999999999999988754
No 91
>3e97_A Transcriptional regulator, CRP/FNR family; YP_604437.1, structural genomics, joint center for structural genomics, JCSG; HET: MSE; 1.86A {Deinococcus geothermalis dsm 11300}
Probab=98.25 E-value=2e-06 Score=78.33 Aligned_cols=96 Identities=16% Similarity=0.124 Sum_probs=79.6
Q ss_pred cHHHHHHHHhcCCCCCCCccccccccCcccceEEEEEeeEEEEEE----cCCcceeecCCccchhhhhcccccccCCCCC
Q psy4847 240 VGSLLDRITQKGTSQQKPTFKSLKKRNKPVDYFVLILEGRAEVVV----GKENLVYEAGPFSYFGCQALTQNIGIAESPT 315 (396)
Q Consensus 240 ~e~vL~~Ll~~~~v~~~~~~~~LY~~g~~~d~f~LIL~Grv~V~~----G~e~~~~E~gpfs~~G~~aL~~~~~~~~~~~ 315 (396)
++..+..|..+.......+...||+.|++++++++|++|+|++.. |++-.....+|..+||+.++... .+
T Consensus 18 ~~~~~~~l~~~~~~~~~~~g~~i~~~G~~~~~~y~i~~G~v~~~~~~~~g~~~~~~~~~~g~~~G~~~~~~~-----~~- 91 (231)
T 3e97_A 18 PEDAMREALKVVTERNFQPDELVVEQDAEGEALHLVTTGVVRVSRVSLGGRERVLGDIYAPGVVGETAVLAH-----QE- 91 (231)
T ss_dssp CHHHHHHHHHTEEEEEECTTCBCCCTTCTTTCEEEECSSEEEEEEECC--CEEEEEEEESSEEESTTTTTCC-----CC-
T ss_pred CHHHHHHHHHhcEEEEECCCCEEEeCCCCCCeEEEEEecEEEEEEECCCCceEEEEecCCCCEEeeHHHhCC-----CC-
Confidence 456688888887777778888999999999999999999999986 77778889999999999987651 00
Q ss_pred CCCCcccccCCCcccccccccCCcccccCcEEEEcCCeEEEEEeHHHHHHHHH
Q psy4847 316 NNSSAAQAYGGSLQSVNLDSILRYTFVPDYSVRATTEMFYVKIRRSFYLAAKR 368 (396)
Q Consensus 316 ~~~~~~~~~~~s~~~~~~~~~~~~~~~PD~sv~~~~d~~~~~Itr~~Y~~al~ 368 (396)
..++++|.++|+++.|++..+...+.
T Consensus 92 ---------------------------~~~~~~a~~~~~v~~i~~~~~~~l~~ 117 (231)
T 3e97_A 92 ---------------------------RSASVRALTPVRTLMLHREHFELILR 117 (231)
T ss_dssp ---------------------------CCEEEEESSCEEEEEECHHHHHHHHH
T ss_pred ---------------------------ceEEEEECCcEEEEEEeHHHHHHHHH
Confidence 12489999999999999999887653
No 92
>1zyb_A Transcription regulator, CRP family; NP_813211.1, structural genomics, joint center for structura genomics, JCSG; 2.15A {Bacteroides thetaiotaomicron} SCOP: a.4.5.4 b.82.3.2
Probab=98.24 E-value=2.5e-06 Score=78.16 Aligned_cols=95 Identities=18% Similarity=0.133 Sum_probs=79.5
Q ss_pred cHHHHHHHHhc--CCCCCCCccccccccCcccceEEEEEeeEEEEEE----cCCcceeecCCccchhhhhcccccccCCC
Q psy4847 240 VGSLLDRITQK--GTSQQKPTFKSLKKRNKPVDYFVLILEGRAEVVV----GKENLVYEAGPFSYFGCQALTQNIGIAES 313 (396)
Q Consensus 240 ~e~vL~~Ll~~--~~v~~~~~~~~LY~~g~~~d~f~LIL~Grv~V~~----G~e~~~~E~gpfs~~G~~aL~~~~~~~~~ 313 (396)
++..+..|+.. .......++..||+.|++++++++|++|.|++.. |++-.....||..+||+.++....
T Consensus 30 ~~~~~~~l~~~~~~~~~~~~~ge~i~~~G~~~~~~y~i~~G~v~~~~~~~~G~~~~l~~~~~G~~fG~~~~~~~~----- 104 (232)
T 1zyb_A 30 CHEDFTSILDKVKLHFIKHKAGETIIKSGNPCTQLCFLLKGEISIVTNAKENIYTVIEQIEAPYLIEPQSLFGMN----- 104 (232)
T ss_dssp CHHHHHHHHHTSCCEEEEECTTCEEECTTSBCCEEEEEEESEEEEEEECGGGSCEEEEEEESSEEECGGGGSSSC-----
T ss_pred CHHHHHHHHhhCCcEEEEECCCCEEECCCCcccEEEEEEeeEEEEEEECCCCCEEEEEEccCCCeeeehHHhCCC-----
Confidence 56678888887 6777788889999999999999999999999985 788888999999999999887510
Q ss_pred CCCCCCcccccCCCcccccccccCCcccccCcEEEEcCCeEEEEEeHHHHHHH
Q psy4847 314 PTNNSSAAQAYGGSLQSVNLDSILRYTFVPDYSVRATTEMFYVKIRRSFYLAA 366 (396)
Q Consensus 314 ~~~~~~~~~~~~~s~~~~~~~~~~~~~~~PD~sv~~~~d~~~~~Itr~~Y~~a 366 (396)
+ ...++++|+++|+++.|++..+...
T Consensus 105 ~---------------------------~~~~~~~A~~~~~v~~i~~~~~~~l 130 (232)
T 1zyb_A 105 T---------------------------NYASSYVAHTEVHTVCISKAFVLSD 130 (232)
T ss_dssp C---------------------------BCSSEEEESSCEEEEEEEHHHHHHT
T ss_pred C---------------------------CCceEEEEccceEEEEEEHHHHHHH
Confidence 0 0124999999999999999987654
No 93
>3fx3_A Cyclic nucleotide-binding protein; helix_TURN_helix, CAMP regulatory protein, structural genomi 2, protein structure initiative; 2.20A {Ruegeria pomeroyi} PDB: 3h3z_A*
Probab=98.24 E-value=2.8e-06 Score=77.64 Aligned_cols=96 Identities=16% Similarity=0.171 Sum_probs=80.9
Q ss_pred cHHHHHHHHhcCCCCCCCccccccccCcccceEEEEEeeEEEEEE----cCCcceeecCCccchhhhhcccccccCCCCC
Q psy4847 240 VGSLLDRITQKGTSQQKPTFKSLKKRNKPVDYFVLILEGRAEVVV----GKENLVYEAGPFSYFGCQALTQNIGIAESPT 315 (396)
Q Consensus 240 ~e~vL~~Ll~~~~v~~~~~~~~LY~~g~~~d~f~LIL~Grv~V~~----G~e~~~~E~gpfs~~G~~aL~~~~~~~~~~~ 315 (396)
++..+..|..........++..||+.|++++++++|++|.|++.. |++-...-.||..+||+.++... .+
T Consensus 23 ~~~~~~~l~~~~~~~~~~~g~~i~~~G~~~~~~y~i~~G~v~~~~~~~~G~~~~~~~~~~G~~~G~~~~~~~-----~~- 96 (237)
T 3fx3_A 23 PEQHVDALLSQAVWRSYDRGETLFLQEEKAQAIHVVIDGWVKLFRMTPTGSEAVVSVFTRGESFGEAVALRN-----TP- 96 (237)
T ss_dssp CHHHHHHHHTTCEEEEECTTCEEECTTSCCCEEEEEEESEEEEEEECTTSCEEEEEEEETTEEECHHHHHHT-----CC-
T ss_pred CHHHHHHHHhhCEEEEECCCCEEEcCCCccceEEEEEeeEEEEEEECCCCCEEEEEEeCCCCEechHHHhcC-----CC-
Confidence 556788888887777778888999999999999999999999987 67778889999999999998751 00
Q ss_pred CCCCcccccCCCcccccccccCCcccccCcEEEEcCCeEEEEEeHHHHHHHHH
Q psy4847 316 NNSSAAQAYGGSLQSVNLDSILRYTFVPDYSVRATTEMFYVKIRRSFYLAAKR 368 (396)
Q Consensus 316 ~~~~~~~~~~~s~~~~~~~~~~~~~~~PD~sv~~~~d~~~~~Itr~~Y~~al~ 368 (396)
..++++|.++|.++.|++..+...+.
T Consensus 97 ---------------------------~~~~~~a~~~~~v~~i~~~~~~~l~~ 122 (237)
T 3fx3_A 97 ---------------------------YPVSAEAVTPCEVMHIPSPVFVSLMR 122 (237)
T ss_dssp ---------------------------CSSEEEESSSEEEEEEEHHHHHHHHH
T ss_pred ---------------------------CCceEEECCceEEEEEcHHHHHHHHH
Confidence 12489999999999999999877653
No 94
>3ukn_A Novel protein similar to vertebrate potassium VOL channel, subfamily H (EAG-related)...; KCNH, ELK, ERG, CNBD, CNBHD, C-linker, ION channel; 2.20A {Danio rerio} PDB: 3ukt_B 3ukv_B
Probab=98.24 E-value=3e-06 Score=76.50 Aligned_cols=98 Identities=14% Similarity=0.077 Sum_probs=79.3
Q ss_pred cHHHHHHHHhcCCCCCCCccccccccCcccceEEEEEeeEEEEEEcCCcceeecCCccchhhhhcccccccCCCCCCCCC
Q psy4847 240 VGSLLDRITQKGTSQQKPTFKSLKKRNKPVDYFVLILEGRAEVVVGKENLVYEAGPFSYFGCQALTQNIGIAESPTNNSS 319 (396)
Q Consensus 240 ~e~vL~~Ll~~~~v~~~~~~~~LY~~g~~~d~f~LIL~Grv~V~~G~e~~~~E~gpfs~~G~~aL~~~~~~~~~~~~~~~ 319 (396)
++..+..|..........++..||+.|++++++++|++|+|+|... +......+|.++||+.++....
T Consensus 87 ~~~~l~~l~~~~~~~~~~~ge~I~~~G~~~~~ly~I~~G~v~v~~~-~~~~~~l~~G~~fGe~~~~~~~----------- 154 (212)
T 3ukn_A 87 SRGCLRSLSLIIKTSFCAPGEFLIRQGDALQAIYFVCSGSMEVLKD-NTVLAILGKGDLIGSDSLTKEQ----------- 154 (212)
T ss_dssp CHHHHHHHHHHCEEEEECTTCEEECTTSBCCEEEEEEECCEEEESS-SCEEEEECTTCEEECSCCSSSS-----------
T ss_pred CHHHHHHHHHHhheEEeCCCCEEEECCCcccEEEEEEecEEEEEEC-CeEEEEecCCCCcCcHHhccCC-----------
Confidence 5677888887776666777888999999999999999999999973 4667789999999998877510
Q ss_pred cccccCCCcccccccccCCcccccCcEEEEcCCeEEEEEeHHHHHHHHHH
Q psy4847 320 AAQAYGGSLQSVNLDSILRYTFVPDYSVRATTEMFYVKIRRSFYLAAKRA 369 (396)
Q Consensus 320 ~~~~~~~s~~~~~~~~~~~~~~~PD~sv~~~~d~~~~~Itr~~Y~~al~a 369 (396)
.+-..++|+|.++|+++.|+|..+...+..
T Consensus 155 --------------------~~~~~~~v~a~~~~~l~~i~~~~f~~ll~~ 184 (212)
T 3ukn_A 155 --------------------VIKTNANVKALTYCDLQYISLKGLREVLRL 184 (212)
T ss_dssp --------------------CCBBCSEEEESSCEEEEEEEHHHHHHHHHH
T ss_pred --------------------CCCcceEEEEcccEEEEEEeHHHHHHHHHH
Confidence 001124999999999999999999887653
No 95
>3of1_A CAMP-dependent protein kinase regulatory subunit; cyclic nucleotide binding domain, evolution, PKA signaling, transfer; HET: CMP; 2.21A {Saccharomyces cerevisiae}
Probab=98.24 E-value=1.7e-06 Score=78.98 Aligned_cols=95 Identities=22% Similarity=0.244 Sum_probs=78.0
Q ss_pred cHHHHHHHHhcCCCCCCCccccccccCcccceEEEEEeeEEEEEEcCCcceeecCCccchhhhhcccccccCCCCCCCCC
Q psy4847 240 VGSLLDRITQKGTSQQKPTFKSLKKRNKPVDYFVLILEGRAEVVVGKENLVYEAGPFSYFGCQALTQNIGIAESPTNNSS 319 (396)
Q Consensus 240 ~e~vL~~Ll~~~~v~~~~~~~~LY~~g~~~d~f~LIL~Grv~V~~G~e~~~~E~gpfs~~G~~aL~~~~~~~~~~~~~~~ 319 (396)
++..+..|..........++..||+.|+++++|++|++|+|+|..... .....+|..+||+.+|.... +
T Consensus 19 ~~~~~~~l~~~~~~~~~~~g~~i~~~G~~~~~~y~i~~G~v~v~~~~~-~~~~~~~g~~fGe~~l~~~~-----~----- 87 (246)
T 3of1_A 19 DSDSKRLVINCLEEKSVPKGATIIKQGDQGDYFYVVEKGTVDFYVNDN-KVNSSGPGSSFGELALMYNS-----P----- 87 (246)
T ss_dssp CHHHHHHHHTTCEEEEECTTCEEECTTCCCCEEEEEEECCEEEESTTS-CCEEECTTCEECHHHHHHTC-----C-----
T ss_pred CHHHHHHHHHhhceEEECCCCEEEecCCCCCEEEEEEeeEEEEEECCE-EEEecCCCCeeehhHHhcCC-----C-----
Confidence 456688888777777778888999999999999999999999998443 35789999999999987610 1
Q ss_pred cccccCCCcccccccccCCcccccCcEEEEcCCeEEEEEeHHHHHHHHH
Q psy4847 320 AAQAYGGSLQSVNLDSILRYTFVPDYSVRATTEMFYVKIRRSFYLAAKR 368 (396)
Q Consensus 320 ~~~~~~~s~~~~~~~~~~~~~~~PD~sv~~~~d~~~~~Itr~~Y~~al~ 368 (396)
-.+|++|.++|.++.|+|..|...+.
T Consensus 88 -----------------------~~~tv~a~~~~~~~~i~~~~~~~~~~ 113 (246)
T 3of1_A 88 -----------------------RAATVVATSDCLLWALDRLTFRKILL 113 (246)
T ss_dssp -----------------------CSSEEEESSCEEEEEEEHHHHHHTTT
T ss_pred -----------------------CCcEEEECCCeEEEEEEhHHHHHHHH
Confidence 01389999999999999999987653
No 96
>3dv8_A Transcriptional regulator, CRP/FNR family; cyclic nucleotide-binding domain, structural genomics, joint for structural genomics; 2.55A {Eubacterium rectale atcc 33656}
Probab=98.23 E-value=4.3e-06 Score=75.19 Aligned_cols=96 Identities=13% Similarity=0.155 Sum_probs=79.5
Q ss_pred cHHHHHHHHhcCCCCCCCccccccccCcccceEEEEEeeEEEEEE----cCCcceeecCCccc--hhhhhcccccccCCC
Q psy4847 240 VGSLLDRITQKGTSQQKPTFKSLKKRNKPVDYFVLILEGRAEVVV----GKENLVYEAGPFSY--FGCQALTQNIGIAES 313 (396)
Q Consensus 240 ~e~vL~~Ll~~~~v~~~~~~~~LY~~g~~~d~f~LIL~Grv~V~~----G~e~~~~E~gpfs~--~G~~aL~~~~~~~~~ 313 (396)
++..+..|..+.......++..||+.|++++++++|++|.|++.. |++-...-.+|..+ ||+.++....
T Consensus 15 ~~~~~~~l~~~~~~~~~~~g~~i~~~G~~~~~~y~i~~G~v~~~~~~~~G~~~~~~~~~~G~~~~~g~~~~~~~~----- 89 (220)
T 3dv8_A 15 NTAQKKLISDNLITQHVKKGTIIHNGNMDCTGLLLVKSGQLRTYILSDEGREITLYRLFDMDMCLLSASCIMRSI----- 89 (220)
T ss_dssp CHHHHHHHHTTCEEEEECTTCEEEEGGGCCCEEEEEEESCEEEEEECTTSCEEEEEEECTTCEESGGGGGGCTTC-----
T ss_pred CHHHHHHHHhhCceEEeCCCCEEECCCCCcceEEEEEeceEEEEEECCCCCEEEEEecCCCCeeehhHHHHhCCC-----
Confidence 456688888887777778888999999999999999999999987 77777888899998 7888877510
Q ss_pred CCCCCCcccccCCCcccccccccCCcccccCcEEEEcCCeEEEEEeHHHHHHHHH
Q psy4847 314 PTNNSSAAQAYGGSLQSVNLDSILRYTFVPDYSVRATTEMFYVKIRRSFYLAAKR 368 (396)
Q Consensus 314 ~~~~~~~~~~~~~s~~~~~~~~~~~~~~~PD~sv~~~~d~~~~~Itr~~Y~~al~ 368 (396)
+ ..++++|.+||+++.|++..+...+.
T Consensus 90 ~----------------------------~~~~~~a~~~~~~~~i~~~~~~~l~~ 116 (220)
T 3dv8_A 90 Q----------------------------FEVTIEAEKDTDLWIIPAEIYKGIMK 116 (220)
T ss_dssp C----------------------------CCCEEEESSCEEEEEEEHHHHHHHHH
T ss_pred C----------------------------CceEEEEeeeeEEEEEEHHHHHHHHH
Confidence 0 12489999999999999999877654
No 97
>3d0s_A Transcriptional regulatory protein; CAMP receptor protein (CRP), dimer, inactive(APO, unliganded allostery, DNA binding, cyclic AMP; 2.00A {Mycobacterium tuberculosis} PDB: 3i54_A* 3i59_A* 3mzh_A* 3h3u_A* 3r6s_A*
Probab=98.22 E-value=1.3e-06 Score=79.24 Aligned_cols=94 Identities=22% Similarity=0.281 Sum_probs=77.7
Q ss_pred cHHHHHHHHhcCCCCCCCccccccccCcccceEEEEEeeEEEEEE----cCCcceeecCCccchhhhhcccccccCCCCC
Q psy4847 240 VGSLLDRITQKGTSQQKPTFKSLKKRNKPVDYFVLILEGRAEVVV----GKENLVYEAGPFSYFGCQALTQNIGIAESPT 315 (396)
Q Consensus 240 ~e~vL~~Ll~~~~v~~~~~~~~LY~~g~~~d~f~LIL~Grv~V~~----G~e~~~~E~gpfs~~G~~aL~~~~~~~~~~~ 315 (396)
++..+..|+.+.......+...||+.|++++++++|++|+|.+.. |++-.....+|..+||+.++.... +
T Consensus 18 ~~~~~~~l~~~~~~~~~~~g~~i~~~G~~~~~~y~i~~G~v~~~~~~~~g~~~~~~~~~~G~~~G~~~~~~~~-----~- 91 (227)
T 3d0s_A 18 EPSAIAALTKQLQPVDFPRGHTVFAEGEPGDRLYIIISGKVKIGRRAPDGRENLLTIMGPSDMFGELSIFDPG-----P- 91 (227)
T ss_dssp CSSTTHHHHTTSCEEEECTTCEEECTTCCCCEEEEEEESCEEEEEECTTSCEEEEEEECTTCEESCHHHHSCS-----C-
T ss_pred CHHHHHHHHhhCeEEEeCCCCEEEcCCCcCCEEEEEEeeEEEEEEECCCCcEEEEEEecCCCEEeeHHHcCCC-----C-
Confidence 345567777777777778888999999999999999999999986 777788899999999998877510 0
Q ss_pred CCCCcccccCCCcccccccccCCcccccCcEEEEcCCeEEEEEeHHHHHHH
Q psy4847 316 NNSSAAQAYGGSLQSVNLDSILRYTFVPDYSVRATTEMFYVKIRRSFYLAA 366 (396)
Q Consensus 316 ~~~~~~~~~~~s~~~~~~~~~~~~~~~PD~sv~~~~d~~~~~Itr~~Y~~a 366 (396)
..++++|.++|.++.|++..+...
T Consensus 92 ---------------------------~~~~~~A~~~~~v~~i~~~~~~~l 115 (227)
T 3d0s_A 92 ---------------------------RTSSATTITEVRAVSMDRDALRSW 115 (227)
T ss_dssp ---------------------------CSSEEEESSCEEEEEEEHHHHHHT
T ss_pred ---------------------------ceeEEEEcccEEEEEEeHHHHHHH
Confidence 124899999999999999988754
No 98
>3shr_A CGMP-dependent protein kinase 1; cyclic nucleotide binding domains, cyclic nucleotide protein transferase, PKG; HET: CMP; 2.50A {Bos taurus}
Probab=98.22 E-value=4.1e-06 Score=79.46 Aligned_cols=98 Identities=16% Similarity=0.100 Sum_probs=80.2
Q ss_pred cHHHHHHHHhcCCCCCCCccccccccCcccceEEEEEeeEEEEEEcCCcceeecCCccchhhhhcccccccCCCCCCCCC
Q psy4847 240 VGSLLDRITQKGTSQQKPTFKSLKKRNKPVDYFVLILEGRAEVVVGKENLVYEAGPFSYFGCQALTQNIGIAESPTNNSS 319 (396)
Q Consensus 240 ~e~vL~~Ll~~~~v~~~~~~~~LY~~g~~~d~f~LIL~Grv~V~~G~e~~~~E~gpfs~~G~~aL~~~~~~~~~~~~~~~ 319 (396)
++..+..|.+........++..||+.|+++++|++|++|.|+|... +......+|..+||+.+|....
T Consensus 51 ~~~~~~~l~~~~~~~~~~~g~~i~~~G~~~~~~yiI~~G~v~v~~~-g~~~~~~~~G~~fGe~~ll~~~----------- 118 (299)
T 3shr_A 51 ELSQIQEIVDCMYPVEYGKDSCIIKEGDVGSLVYVMEDGKVEVTKE-GVKLCTMGPGKVFGELAILYNC----------- 118 (299)
T ss_dssp CHHHHHHHHHHCEEEEECTTCEEECTTCBCCCEEEEEESCEEEEET-TEEEEEECTTCEESCSGGGTTT-----------
T ss_pred CHHHHHHHHHhcCeEEECCCCEEEcCCCcCceEEEEEEEEEEEEEC-CEEEEEeCCCCeeeHhHHhcCC-----------
Confidence 4566777887776666778889999999999999999999999763 3566789999999999988520
Q ss_pred cccccCCCcccccccccCCcccccCcEEEEcCCeEEEEEeHHHHHHHHHHhh
Q psy4847 320 AAQAYGGSLQSVNLDSILRYTFVPDYSVRATTEMFYVKIRRSFYLAAKRATL 371 (396)
Q Consensus 320 ~~~~~~~s~~~~~~~~~~~~~~~PD~sv~~~~d~~~~~Itr~~Y~~al~as~ 371 (396)
| -.+||+|.++|.++.|+|..|...+....
T Consensus 119 ~----------------------~~~tv~a~~~~~l~~i~~~~~~~i~~~~~ 148 (299)
T 3shr_A 119 T----------------------RTATVKTLVNVKLWAIDRQCFQTIMMRTG 148 (299)
T ss_dssp B----------------------CCSEEEESSCEEEEEECHHHHHHHHHHHH
T ss_pred C----------------------CCcEEEEcCCeEEEEEcHHHHHHHhhHhH
Confidence 0 02389999999999999999999887654
No 99
>2qcs_B CAMP-dependent protein kinase type I-alpha regula subunit, CAMP-dependent protein kinase, alpha-catalytic SU; cyclic adenosine monophosphate; HET: SEP TPO ANP TAM; 2.20A {Bos taurus} PDB: 1rl3_A* 1rgs_A* 1ne6_A* 1ne4_A*
Probab=98.21 E-value=4.7e-06 Score=78.52 Aligned_cols=96 Identities=19% Similarity=0.117 Sum_probs=78.9
Q ss_pred cHHHHHHHHhcCCCCCCCccccccccCcccceEEEEEeeEEEEEEcCCcceeecCCccchhhhhcccccccCCCCCCCCC
Q psy4847 240 VGSLLDRITQKGTSQQKPTFKSLKKRNKPVDYFVLILEGRAEVVVGKENLVYEAGPFSYFGCQALTQNIGIAESPTNNSS 319 (396)
Q Consensus 240 ~e~vL~~Ll~~~~v~~~~~~~~LY~~g~~~d~f~LIL~Grv~V~~G~e~~~~E~gpfs~~G~~aL~~~~~~~~~~~~~~~ 319 (396)
++..+..|.+........++..||+.|++++.|++|++|+|.|.. ........+|..+||+.+|....
T Consensus 51 ~~~~~~~l~~~~~~~~~~~g~~i~~~G~~~~~~y~i~~G~v~~~~-~g~~~~~l~~G~~fGe~~l~~~~----------- 118 (291)
T 2qcs_B 51 DDNERSDIFDAMFPVSFIAGETVIQQGDEGDNFYVIDQGEMDVYV-NNEWATSVGEGGSFGELALIYGT----------- 118 (291)
T ss_dssp CHHHHHHHHHHCEEEEECTTCEEECTTSBCCEEEEEEECCEEEEE-TTEEEEEECTTCEECGGGGTCCC-----------
T ss_pred CHHHHHHHHHhccEEEECCCCEEEeCCCCCceEEEEeeeEEEEEE-CCeEEEEcCCCCccchHHHhcCC-----------
Confidence 456677788777666677888999999999999999999999998 33567888999999998887510
Q ss_pred cccccCCCcccccccccCCcccccCcEEEEcCCeEEEEEeHHHHHHHHHH
Q psy4847 320 AAQAYGGSLQSVNLDSILRYTFVPDYSVRATTEMFYVKIRRSFYLAAKRA 369 (396)
Q Consensus 320 ~~~~~~~s~~~~~~~~~~~~~~~PD~sv~~~~d~~~~~Itr~~Y~~al~a 369 (396)
| -.++++|.++|.++.|+|..|...+..
T Consensus 119 ~----------------------~~~tv~a~~~~~~~~i~~~~~~~~~~~ 146 (291)
T 2qcs_B 119 P----------------------RAATVKAKTNVKLWGIDRDSYRRILMG 146 (291)
T ss_dssp B----------------------CSSEEEESSCEEEEEEEHHHHHHHHHH
T ss_pred C----------------------CceEEEECCCEEEEEEEhHHHHHHHhh
Confidence 0 024999999999999999999988754
No 100
>3dkw_A DNR protein; CRP-FNR, HTH, beta barrel, dimerization helix, homodimer, transcription regulator; 3.60A {Pseudomonas aeruginosa}
Probab=98.20 E-value=2.1e-06 Score=77.66 Aligned_cols=96 Identities=10% Similarity=0.112 Sum_probs=80.0
Q ss_pred cHHHHHHHHhcCCCCCCCccccccccCcccceEEEEEeeEEEEEE----cCCcceeecCCccchhhhhcccccccCCCCC
Q psy4847 240 VGSLLDRITQKGTSQQKPTFKSLKKRNKPVDYFVLILEGRAEVVV----GKENLVYEAGPFSYFGCQALTQNIGIAESPT 315 (396)
Q Consensus 240 ~e~vL~~Ll~~~~v~~~~~~~~LY~~g~~~d~f~LIL~Grv~V~~----G~e~~~~E~gpfs~~G~~aL~~~~~~~~~~~ 315 (396)
++..+..|..+.......++..||+.|++++++++|++|.|++.. |++-...-.||..+||+.++... .
T Consensus 21 ~~~~~~~l~~~~~~~~~~~g~~i~~~g~~~~~~y~i~~G~v~~~~~~~~G~~~~~~~~~~g~~~G~~~~~~~--~----- 93 (227)
T 3dkw_A 21 SPVQLQELLASSDLVNLDKGAYVFRQGEPAHAFYYLISGCVKIYRLTPEGQEKILEVTNERNTFAEAMMFMD--T----- 93 (227)
T ss_dssp CHHHHHHHHTSCEEEECCTTEEEECTTSBCCEEEEEEESCEECCBCCGGGCCBCCCEECTTEEESCTTTTTT--C-----
T ss_pred CHHHHHHHHhhCEEEEECCCCEEEcCCCccceEEEEEeCEEEEEEECCCCCEEEEEEcCCCCEeeeHHhcCC--C-----
Confidence 556688888887777788889999999999999999999999986 78888999999999999887641 0
Q ss_pred CCCCcccccCCCcccccccccCCcccccCcEEEEcCCeEEEEEeHHHHHHHH
Q psy4847 316 NNSSAAQAYGGSLQSVNLDSILRYTFVPDYSVRATTEMFYVKIRRSFYLAAK 367 (396)
Q Consensus 316 ~~~~~~~~~~~s~~~~~~~~~~~~~~~PD~sv~~~~d~~~~~Itr~~Y~~al 367 (396)
| .-.++++|.++|.++.|++..+...+
T Consensus 94 ----~---------------------~~~~~~~a~~~~~v~~i~~~~~~~l~ 120 (227)
T 3dkw_A 94 ----P---------------------NYVATAQAVVPSQLFRFSNKAYLRQL 120 (227)
T ss_dssp ----S---------------------BCSSCEEESSCCEEEEEESHHHHHHH
T ss_pred ----C---------------------CCceEEEEcCcEEEEEEeHHHHHHHH
Confidence 0 01248999999999999999887654
No 101
>3shr_A CGMP-dependent protein kinase 1; cyclic nucleotide binding domains, cyclic nucleotide protein transferase, PKG; HET: CMP; 2.50A {Bos taurus}
Probab=98.19 E-value=3.3e-06 Score=80.08 Aligned_cols=96 Identities=16% Similarity=0.175 Sum_probs=78.2
Q ss_pred cHHHHHHHHhcCCCCCCCccccccccCcccceEEEEEeeEEEEEEc-----CCcceeecCCccchhhhhcccccccCCCC
Q psy4847 240 VGSLLDRITQKGTSQQKPTFKSLKKRNKPVDYFVLILEGRAEVVVG-----KENLVYEAGPFSYFGCQALTQNIGIAESP 314 (396)
Q Consensus 240 ~e~vL~~Ll~~~~v~~~~~~~~LY~~g~~~d~f~LIL~Grv~V~~G-----~e~~~~E~gpfs~~G~~aL~~~~~~~~~~ 314 (396)
++..+.+|..........+...||+.|++++++++|++|+|+|... ++......+|..+||+.+|....
T Consensus 169 ~~~~l~~l~~~~~~~~~~~g~~I~~~G~~~~~~yiI~~G~v~~~~~~~~~g~~~~~~~l~~G~~fGe~~ll~~~------ 242 (299)
T 3shr_A 169 PEEILSKLADVLEETHYENGEYIIRQGARGDTFFIISKGKVNVTREDSPNEDPVFLRTLGKGDWFGEKALQGED------ 242 (299)
T ss_dssp CHHHHHHHTTTCEEEEECTTCEEECTTCEECEEEEEEESEEEEEECCSSSCCCEEEEEEETTCEECGGGGSSSE------
T ss_pred CHHHHHHHHHhccEEEECCCCEEEeCCCCCCEEEEEEeeEEEEEEecCCCCcceEEEEcCCCCEeChHHHhCCC------
Confidence 3455777777666666778889999999999999999999999873 45678899999999999987510
Q ss_pred CCCCCcccccCCCcccccccccCCcccccCcEEEEcCCeEEEEEeHHHHHHHHH
Q psy4847 315 TNNSSAAQAYGGSLQSVNLDSILRYTFVPDYSVRATTEMFYVKIRRSFYLAAKR 368 (396)
Q Consensus 315 ~~~~~~~~~~~~s~~~~~~~~~~~~~~~PD~sv~~~~d~~~~~Itr~~Y~~al~ 368 (396)
| -.++|+|.++|+++.|+|..|...+.
T Consensus 243 -----~----------------------~~~tv~a~~~~~l~~i~~~~f~~ll~ 269 (299)
T 3shr_A 243 -----V----------------------RTANVIAAEAVTCLVIDRDSFKHLIG 269 (299)
T ss_dssp -----E----------------------CSSEEEESSSEEEEEEEHHHHHHHHT
T ss_pred -----C----------------------cceEEEECCCEEEEEEeHHHHHHHHc
Confidence 0 02499999999999999999987754
No 102
>2qcs_B CAMP-dependent protein kinase type I-alpha regula subunit, CAMP-dependent protein kinase, alpha-catalytic SU; cyclic adenosine monophosphate; HET: SEP TPO ANP TAM; 2.20A {Bos taurus} PDB: 1rl3_A* 1rgs_A* 1ne6_A* 1ne4_A*
Probab=98.19 E-value=5.5e-06 Score=78.04 Aligned_cols=95 Identities=26% Similarity=0.230 Sum_probs=75.4
Q ss_pred HHHHHHHHhcCCCCCCCccccccccCcccceEEEEEeeEEEEEE----c-CCcceeecCCccchhhhhcccccccCCCCC
Q psy4847 241 GSLLDRITQKGTSQQKPTFKSLKKRNKPVDYFVLILEGRAEVVV----G-KENLVYEAGPFSYFGCQALTQNIGIAESPT 315 (396)
Q Consensus 241 e~vL~~Ll~~~~v~~~~~~~~LY~~g~~~d~f~LIL~Grv~V~~----G-~e~~~~E~gpfs~~G~~aL~~~~~~~~~~~ 315 (396)
...+..|..........+...||+.|+++|+|++|++|+|+|.. | ++-.....||..+||+.+|.... +
T Consensus 170 ~~~~~~l~~~~~~~~~~~g~~i~~~g~~~~~~y~i~~G~v~~~~~~~~~~~~~~~~~l~~G~~fGe~~ll~~~-----~- 243 (291)
T 2qcs_B 170 KWERLTVADALEPVQFEDGQKIVVQGEPGDEFFIILEGSAAVLQRRSENEEFVEVGRLGPSDYFGEIALLMNR-----P- 243 (291)
T ss_dssp HHHHHHHHHHCEEEEECTTCEEECTTSCCCEEEEEEEEEEEEEEECSTTSCEEEEEEECTTCEECSGGGTCCC-----C-
T ss_pred HHHHHHHHhhcEEEEECCCCEEEeCCccCCEEEEEEeCEEEEEEecCCCCccEEEEEeCCCCEecHHHHcCCC-----C-
Confidence 44456666665566667778899999999999999999999985 2 23467889999999999987510 0
Q ss_pred CCCCcccccCCCcccccccccCCcccccCcEEEEcCCeEEEEEeHHHHHHHHH
Q psy4847 316 NNSSAAQAYGGSLQSVNLDSILRYTFVPDYSVRATTEMFYVKIRRSFYLAAKR 368 (396)
Q Consensus 316 ~~~~~~~~~~~s~~~~~~~~~~~~~~~PD~sv~~~~d~~~~~Itr~~Y~~al~ 368 (396)
-.+||+|.++|+.+.|+|..|...+.
T Consensus 244 ---------------------------~~~tv~a~~~~~~~~i~~~~f~~~l~ 269 (291)
T 2qcs_B 244 ---------------------------KAATVVARGPLKCVKLDRPRFERVLG 269 (291)
T ss_dssp ---------------------------CSSEEEEEEEEEEEEEEHHHHHHHHC
T ss_pred ---------------------------cceEEEECCcEEEEEEcHHHHHHHhc
Confidence 12499999999999999999987664
No 103
>4f7z_A RAP guanine nucleotide exchange factor 4; cyclic nucleotide, regulation, auto-IN CDC25 homology domain, exocytosis; 2.60A {Mus musculus} PDB: 2byv_E
Probab=98.17 E-value=3.9e-06 Score=93.45 Aligned_cols=79 Identities=16% Similarity=0.161 Sum_probs=68.7
Q ss_pred ccccccccCcccceEEEEEeeEEEEEEcCCcceeecCCccchhhhhcccccccCCCCCCCCCcccccCCCcccccccccC
Q psy4847 258 TFKSLKKRNKPVDYFVLILEGRAEVVVGKENLVYEAGPFSYFGCQALTQNIGIAESPTNNSSAAQAYGGSLQSVNLDSIL 337 (396)
Q Consensus 258 ~~~~LY~~g~~~d~f~LIL~Grv~V~~G~e~~~~E~gpfs~~G~~aL~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~ 337 (396)
.+..||+.|++.|.|++|++|.|+|....++...+.|++.+||+.||... .++.
T Consensus 368 aGtvI~rQGE~gds~YIIlsG~V~V~~~~~~~v~~L~~Gd~FGElALL~~--~PR~------------------------ 421 (999)
T 4f7z_A 368 GGTVLFNQGEEGTSWYIILKGSVNVVIYGKGVVCTLHEGDDFGKLALVND--APRA------------------------ 421 (999)
T ss_dssp TTCEEECTTSBCCEEEEEEESEEEEEETTTEEEEEEETTCEECGGGGTCS--CBCS------------------------
T ss_pred CCCEEEeCCCcCCeEEEEEeeEEEEEEcCCcceEEecCCCcccchhhccC--CCee------------------------
Confidence 35679999999999999999999999988889999999999999999862 2222
Q ss_pred CcccccCcEEEEcC-CeEEEEEeHHHHHHHHHH
Q psy4847 338 RYTFVPDYSVRATT-EMFYVKIRRSFYLAAKRA 369 (396)
Q Consensus 338 ~~~~~PD~sv~~~~-d~~~~~Itr~~Y~~al~a 369 (396)
+||++.+ ||+|+.|+|+.|...++-
T Consensus 422 -------aTV~a~~d~c~fl~i~k~df~~il~~ 447 (999)
T 4f7z_A 422 -------ASIVLREDNCHFLRVDKEDGNRILRD 447 (999)
T ss_dssp -------SEEEESSSSEEEEEEEHHHHHHHHHH
T ss_pred -------EEEEEecCceEEEEeeHHHHHHHHhH
Confidence 2999988 599999999999998753
No 104
>3la7_A Global nitrogen regulator; activator, DNA-binding, transcription, transcription regulation; HET: BOG; 1.90A {Anabaena} PDB: 3la2_A* 3la3_A* 2xko_A* 2xgx_A* 2xhk_A* 2xkp_A*
Probab=98.14 E-value=5e-06 Score=76.77 Aligned_cols=96 Identities=16% Similarity=0.089 Sum_probs=78.3
Q ss_pred HHHHHHHHhcCC---CCCCCccccccccCcccceEEEEEeeEEEEEE----cCCcceeecCCccchhhhhcccccccCCC
Q psy4847 241 GSLLDRITQKGT---SQQKPTFKSLKKRNKPVDYFVLILEGRAEVVV----GKENLVYEAGPFSYFGCQALTQNIGIAES 313 (396)
Q Consensus 241 e~vL~~Ll~~~~---v~~~~~~~~LY~~g~~~d~f~LIL~Grv~V~~----G~e~~~~E~gpfs~~G~~aL~~~~~~~~~ 313 (396)
+..++.|..... .....+...||+.|++++++++|++|.|++.. |++-...-.||..+||+.++....
T Consensus 30 ~~~l~~L~~~~~~~~~~~~~~ge~i~~~G~~~~~ly~v~~G~v~~~~~~~~G~~~~l~~~~~g~~~G~~~~~~~~----- 104 (243)
T 3la7_A 30 ANVFRQMATGAFPPVVETFERNKTIFFPGDPAERVYFLLKGAVKLSRVYEAGEEITVALLRENSVFGVLSLLTGN----- 104 (243)
T ss_dssp HHHHHHHCCSSCCCEEEEECTTCEEECTTSBCCEEEEEEESCEEEEEECTTCCEEEEEEECTTCEESCHHHHSSC-----
T ss_pred HHHHHHHhhccchheeEEECCCCEEEcCCCCCceEEEEEeCEEEEEEECCCCCEEEEEEecCCCEEcchHHhCCC-----
Confidence 467777777766 66678888999999999999999999999987 788889999999999998877510
Q ss_pred CCCCCCcccccCCCcccccccccCCcccccCcEEEEcCCeEEEEEeHHHHHHHH
Q psy4847 314 PTNNSSAAQAYGGSLQSVNLDSILRYTFVPDYSVRATTEMFYVKIRRSFYLAAK 367 (396)
Q Consensus 314 ~~~~~~~~~~~~~s~~~~~~~~~~~~~~~PD~sv~~~~d~~~~~Itr~~Y~~al 367 (396)
| ..--++++|+++|.++.|++..+...+
T Consensus 105 ------~--------------------~~~~~~~~A~~~~~v~~i~~~~~~~l~ 132 (243)
T 3la7_A 105 ------K--------------------SDRFYHAVAFTPVELLSAPIEQVEQAL 132 (243)
T ss_dssp ------C--------------------SBCCEEEEESSSEEEEEEEHHHHHHHH
T ss_pred ------C--------------------CcceEEEEEccceEEEEEcHHHHHHHH
Confidence 0 000158999999999999999887654
No 105
>3ghd_A A cystathionine beta-synthase domain protein FUSE ribbon-like domain; PF1953,APC40009,cystathionine beta-synthase domain protein; 1.81A {Pyrococcus furiosus}
Probab=98.14 E-value=3.7e-06 Score=64.06 Aligned_cols=63 Identities=10% Similarity=0.109 Sum_probs=49.5
Q ss_pred EEEEeCCCChhHHHHHHHHHcCCcEEEEEeCCCCcEEEEEEhhhhcc-c-CCc---cccchhhhhhhhcCCceE
Q psy4847 55 VYMLSYDAILDFETVSEIMKSGYSRIPVYEDRRTNIVTMFYIKDLAL-V-DPD---DNTPLKTLCQFYQNSCYF 123 (396)
Q Consensus 55 v~~l~~d~~l~~e~i~~i~~~g~sriPV~~~~~~~IVGiL~vkDLl~-~-~~~---~~~~l~~v~~~~~~~v~~ 123 (396)
++++++++++. ++++.|.+++++.+||.++ ++++||++.+||+. + ... ...+++++|. +++.+
T Consensus 2 ~vtv~p~~tv~-ea~~~M~~~~i~~~~V~d~--~~lvGIvT~~Di~~~~~~~~~~~~~~~V~~iMt---~~~iT 69 (70)
T 3ghd_A 2 AIVVQPKDTVD-RVAKILSRNKAGSAVVMEG--DEILGVVTERDILDKVVAKGKNPKEVKVEEIMT---KNPVK 69 (70)
T ss_dssp EEEECTTCBHH-HHHHHHHHTTCSEEEEEET--TEEEEEEEHHHHHHHTTTTTCCGGGCBGGGTCE---ECTTC
T ss_pred CEEECCCCcHH-HHHHHHHHcCCCEEEEEEC--CEEEEEEEHHHHHHHHHhcCCCcccCCHHHhcC---CCCeE
Confidence 67899999999 9999999999999999975 78999999999963 2 111 2346666664 55543
No 106
>4din_B CAMP-dependent protein kinase type I-beta regulat subunit, CAMP-dependent protein kinase catalytic subunit A; isoform diversity; HET: TPO SEP ATP; 3.70A {Homo sapiens}
Probab=98.14 E-value=5.4e-06 Score=82.49 Aligned_cols=97 Identities=18% Similarity=0.126 Sum_probs=80.2
Q ss_pred cHHHHHHHHhcCCCCCCCccccccccCcccceEEEEEeeEEEEEEcCCcceeecCCccchhhhhcccccccCCCCCCCCC
Q psy4847 240 VGSLLDRITQKGTSQQKPTFKSLKKRNKPVDYFVLILEGRAEVVVGKENLVYEAGPFSYFGCQALTQNIGIAESPTNNSS 319 (396)
Q Consensus 240 ~e~vL~~Ll~~~~v~~~~~~~~LY~~g~~~d~f~LIL~Grv~V~~G~e~~~~E~gpfs~~G~~aL~~~~~~~~~~~~~~~ 319 (396)
++..+..|+.........++..||+.|.++++|++|++|.|+|..+. ......+|..+||+.+|....
T Consensus 142 ~~~~l~~l~~~~~~~~~~~ge~I~~~Gd~~~~~yiI~~G~v~v~~~~-~~v~~l~~G~~fGe~all~~~----------- 209 (381)
T 4din_B 142 DDNERSDIFDAMFPVTHIAGETVIQQGNEGDNFYVVDQGEVDVYVNG-EWVTNISEGGSFGELALIYGT----------- 209 (381)
T ss_dssp CHHHHHHHHHHCEEEECCTTCBSSCTTSBCCEEEECSSSEEEEEETT-EEEEEEESSCCBCGGGGTSCC-----------
T ss_pred CHHHHHHHHHhceEEEECCCCEEEeCCCCCCeEEEEEeeEEEEEECC-eEeeeCCCCCEEEchHHhcCC-----------
Confidence 56677888887777777888899999999999999999999999854 356679999999999988621
Q ss_pred cccccCCCcccccccccCCcccccCcEEEEcCCeEEEEEeHHHHHHHHHHh
Q psy4847 320 AAQAYGGSLQSVNLDSILRYTFVPDYSVRATTEMFYVKIRRSFYLAAKRAT 370 (396)
Q Consensus 320 ~~~~~~~s~~~~~~~~~~~~~~~PD~sv~~~~d~~~~~Itr~~Y~~al~as 370 (396)
| -.+||+|.++|.++.|+|..|...++..
T Consensus 210 ~----------------------r~atv~A~~~~~l~~i~~~~f~~ll~~~ 238 (381)
T 4din_B 210 P----------------------RAATVKAKTDLKLWGIDRDSYRRILMGS 238 (381)
T ss_dssp B----------------------CSSEEEESSSCEEEEEEHHHHHHHHHHH
T ss_pred C----------------------cceEEEECCCEEEEEEchHHHHHhhhhh
Confidence 0 0139999999999999999999887654
No 107
>4ava_A Lysine acetyltransferase; allosteric regulation, domain coupling; HET: ACO; 1.70A {Mycobacterium tuberculosis} PDB: 4avb_A* 4avc_A*
Probab=98.13 E-value=4.8e-06 Score=80.34 Aligned_cols=94 Identities=19% Similarity=0.148 Sum_probs=77.0
Q ss_pred cHHHHHHHHhcCCCCCCCccccccccCcccceEEEEEeeEEEEEE----cCCcceeecCCccchhhhhcccccccCCCCC
Q psy4847 240 VGSLLDRITQKGTSQQKPTFKSLKKRNKPVDYFVLILEGRAEVVV----GKENLVYEAGPFSYFGCQALTQNIGIAESPT 315 (396)
Q Consensus 240 ~e~vL~~Ll~~~~v~~~~~~~~LY~~g~~~d~f~LIL~Grv~V~~----G~e~~~~E~gpfs~~G~~aL~~~~~~~~~~~ 315 (396)
++..+..|..........+...||+.|+++++|++|++|.|+|.. |++ .....+|..+||+.+|... .
T Consensus 25 ~~~~~~~l~~~~~~~~~~~g~~i~~~G~~~~~~y~i~~G~v~~~~~~~~g~~-~~~~~~~G~~fGe~~l~~~--~----- 96 (333)
T 4ava_A 25 PAEGLVSLAASVQPLRAAAGQVLLRQGEPAVSFLLISSGSAEVSHVGDDGVA-IIARALPGMIVGEIALLRD--S----- 96 (333)
T ss_dssp CHHHHHHHHHHCEEEEECTTCEEECTTSBCCCEEEEEECCEEEEEECTTCCE-EEEEECTTCEESHHHHHHT--C-----
T ss_pred CHHHHHHHHhhCeEEEECCCCEEEeCCCcCCEEEEEEeeEEEEEEECCCCcE-EEEEecCCCEeeHHHhcCC--C-----
Confidence 456677787777677777888999999999999999999999986 443 7778899999999998762 0
Q ss_pred CCCCcccccCCCcccccccccCCcccccCcEEEEcCCeEEEEEeHHHHHHHH
Q psy4847 316 NNSSAAQAYGGSLQSVNLDSILRYTFVPDYSVRATTEMFYVKIRRSFYLAAK 367 (396)
Q Consensus 316 ~~~~~~~~~~~s~~~~~~~~~~~~~~~PD~sv~~~~d~~~~~Itr~~Y~~al 367 (396)
| -.+||+|+++|.++.|+|..|...+
T Consensus 97 ----~----------------------~~~~v~A~~~~~~~~i~~~~~~~l~ 122 (333)
T 4ava_A 97 ----P----------------------RSATVTTIEPLTGWTGGRGAFATMV 122 (333)
T ss_dssp ----B----------------------CSSEEEESSCEEEEEECHHHHHHHH
T ss_pred ----C----------------------ceEEEEEecCEEEEEEcHHHHHHHH
Confidence 0 0139999999999999999997654
No 108
>3l2b_A Probable manganase-dependent inorganic pyrophosphatase; family II, CBS domain, bateman domain, AP4A, diadenosine polyphosphate, DRTGG; HET: B4P; 2.27A {Clostridium perfringens} PDB: 3l31_A*
Probab=98.11 E-value=2.2e-06 Score=79.59 Aligned_cols=60 Identities=22% Similarity=0.331 Sum_probs=50.3
Q ss_pred ccccccccccccCCCEEEEeCCCChhHHHHHHHHHcCCcEEEEEeCCCCcEEEEEEhhhhccc
Q psy4847 40 LRRKIVGDVMTKLEDVYMLSYDAILDFETVSEIMKSGYSRIPVYEDRRTNIVTMFYIKDLALV 102 (396)
Q Consensus 40 l~~~tV~dIMtp~~dv~~l~~d~~l~~e~i~~i~~~g~sriPV~~~~~~~IVGiL~vkDLl~~ 102 (396)
....+|+++|+| .+++++++++++. ++++.|.+++++++||++++ |+++|+|+.+||+..
T Consensus 182 ~~~~~v~~im~~-~~~~~~~~~~~~~-~~~~~m~~~~~~~~pVvd~~-~~~~Giit~~dll~~ 241 (245)
T 3l2b_A 182 VQSLPVDYVMTK-DNLVAVSTDDLVE-DVKVTMSETRYSNYPVIDEN-NKVVGSIARFHLIST 241 (245)
T ss_dssp GGGSBHHHHSBC-TTCCCEETTSBHH-HHHHHHHHHCCSEEEEECTT-CBEEEEEECC-----
T ss_pred hcCCceeeEecC-CccEEECCCCcHH-HHHHHHHhcCCceEEEEcCC-CeEEEEEEHHHhhch
Confidence 356789999997 6789999999999 99999999999999999765 899999999999854
No 109
>4din_B CAMP-dependent protein kinase type I-beta regulat subunit, CAMP-dependent protein kinase catalytic subunit A; isoform diversity; HET: TPO SEP ATP; 3.70A {Homo sapiens}
Probab=98.10 E-value=1.5e-05 Score=79.28 Aligned_cols=95 Identities=24% Similarity=0.177 Sum_probs=75.8
Q ss_pred HHHHHHHHhcCCCCCCCccccccccCcccceEEEEEeeEEEEEEc----C-CcceeecCCccchhhhhcccccccCCCCC
Q psy4847 241 GSLLDRITQKGTSQQKPTFKSLKKRNKPVDYFVLILEGRAEVVVG----K-ENLVYEAGPFSYFGCQALTQNIGIAESPT 315 (396)
Q Consensus 241 e~vL~~Ll~~~~v~~~~~~~~LY~~g~~~d~f~LIL~Grv~V~~G----~-e~~~~E~gpfs~~G~~aL~~~~~~~~~~~ 315 (396)
+..+.+|..........++..||+.|+++++|++|++|+|+|... + +......||..+||+.+|... .
T Consensus 261 ~~el~~l~~~~~~~~~~~ge~I~~eGd~~~~~yiI~~G~v~v~~~~~~~~~~~~v~~l~~Gd~fGe~all~~--~----- 333 (381)
T 4din_B 261 KWERLTVADALEPVQFEDGEKIVVQGEPGDDFYIITEGTASVLQRRSPNEEYVEVGRLGPSDYFGEIALLLN--R----- 333 (381)
T ss_dssp TTHHHHHHTTCBCCCBCSSCBSSCTTSBCCEEEEEEESCEEEECCSSSSSCCCEEEEECTTCEECTTGGGSC--C-----
T ss_pred HHHHHHHHHhhhhccCCCCCEEEeCCCcCCEEEEEEeCEEEEEEecCCCCceEEEEEeCCCCEechHHHhCC--C-----
Confidence 344556666556666777888999999999999999999999873 3 334788999999999998861 0
Q ss_pred CCCCcccccCCCcccccccccCCcccccCcEEEEcCCeEEEEEeHHHHHHHHH
Q psy4847 316 NNSSAAQAYGGSLQSVNLDSILRYTFVPDYSVRATTEMFYVKIRRSFYLAAKR 368 (396)
Q Consensus 316 ~~~~~~~~~~~s~~~~~~~~~~~~~~~PD~sv~~~~d~~~~~Itr~~Y~~al~ 368 (396)
| -.+||+|.++|.++.|+|..|...+.
T Consensus 334 ----~----------------------r~~tv~A~~~~~ll~i~~~~f~~ll~ 360 (381)
T 4din_B 334 ----P----------------------RAATVVARGPLKCVKLDRPRFERVLG 360 (381)
T ss_dssp ----B----------------------CSSEEEESSCBEEEEEEHHHHHHHHC
T ss_pred ----C----------------------ceeEEEEcCCEEEEEEeHHHHHHHHh
Confidence 0 01499999999999999999988764
No 110
>3fio_A A cystathionine beta-synthase domain protein fused to A Zn-ribbon-like domain; PF1953,APC40009,cystathionine beta-synthase domain protein; 1.81A {Pyrococcus furiosus} PDB: 3ghd_A
Probab=98.07 E-value=5.2e-06 Score=61.63 Aligned_cols=58 Identities=9% Similarity=0.103 Sum_probs=47.0
Q ss_pred EEEEeCCCChhHHHHHHHHHcCCcEEEEEeCCCCcEEEEEEhhhhcccC--C---ccccchhhhhh
Q psy4847 55 VYMLSYDAILDFETVSEIMKSGYSRIPVYEDRRTNIVTMFYIKDLALVD--P---DDNTPLKTLCQ 115 (396)
Q Consensus 55 v~~l~~d~~l~~e~i~~i~~~g~sriPV~~~~~~~IVGiL~vkDLl~~~--~---~~~~~l~~v~~ 115 (396)
++++++++++. ++++.|.+++++++||+++ ++++|+|+.+||+... . ....+++++|.
T Consensus 2 ~~~v~~~~~~~-~a~~~m~~~~~~~~pV~d~--~~l~Givt~~dl~~~~~~~~~~~~~~~v~~im~ 64 (70)
T 3fio_A 2 AIVVQPKDTVD-RVAKILSRNKAGSAVVMEG--DEILGVVTERDILDKVVAKGKNPKEVKVEEIMT 64 (70)
T ss_dssp EEEECTTCBHH-HHHHHHHHTTCSEEEEEET--TEEEEEEEHHHHHHHTTTTTCCGGGCBGGGTCE
T ss_pred CeEECCCCcHH-HHHHHHHHcCCCEEEEEEC--CEEEEEEEHHHHHHHHHHcCCCcccCCHHHhcC
Confidence 57899999999 9999999999999999986 7999999999997542 1 12345666653
No 111
>3tnp_B CAMP-dependent protein kinase type II-beta regula subunit; PKA RIIB tetrameric holoenzyme, transferase; HET: SEP TPO; 2.30A {Mus musculus} PDB: 3tnq_A* 1cx4_A* 2qvs_B*
Probab=98.06 E-value=8.3e-06 Score=82.24 Aligned_cols=96 Identities=14% Similarity=0.076 Sum_probs=76.6
Q ss_pred cHHHHHHHHhcCCCCCCCccccccccCcccceEEEEEeeEEEEEE----------cCCcceeecCCccchhhhhcccccc
Q psy4847 240 VGSLLDRITQKGTSQQKPTFKSLKKRNKPVDYFVLILEGRAEVVV----------GKENLVYEAGPFSYFGCQALTQNIG 309 (396)
Q Consensus 240 ~e~vL~~Ll~~~~v~~~~~~~~LY~~g~~~d~f~LIL~Grv~V~~----------G~e~~~~E~gpfs~~G~~aL~~~~~ 309 (396)
++..+.+|..........+...||+.|.++++|++|++|+|+|.. |++......||..+||+.+|...
T Consensus 279 s~~el~~L~~~l~~~~~~~Ge~I~~eGd~~~~~yiI~sG~v~v~~~~~~~~~~~~g~~~~l~~l~~G~~fGE~all~~-- 356 (416)
T 3tnp_B 279 EVSERLKVVDVIGTKVYNDGEQIIAQGDLADSFFIVESGEVKITMKRKGKSEVEENGAVEIARCFRGQYFGELALVTN-- 356 (416)
T ss_dssp CHHHHHHHHHHCEEEEECTTCEEECTTSCCCEEEEEEEEEEEEECC------------CEEEEECTTCEESGGGGTCC--
T ss_pred CHHHHHHHHhhceEEEECCCCEEEeCCCcCCEEEEEEeCEEEEEEecCCcccccCCceeEEEEeCCCCEecHHHHhCC--
Confidence 445566777666666667788899999999999999999999975 56677889999999999999851
Q ss_pred cCCCCCCCCCcccccCCCcccccccccCCcccccCcEEEEcCCeEEEEEeHHHHHHHHH
Q psy4847 310 IAESPTNNSSAAQAYGGSLQSVNLDSILRYTFVPDYSVRATTEMFYVKIRRSFYLAAKR 368 (396)
Q Consensus 310 ~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~PD~sv~~~~d~~~~~Itr~~Y~~al~ 368 (396)
. + -.+||+|.++|.++.|+|..|...+.
T Consensus 357 ~---~----------------------------r~~tv~A~~~~~ll~I~~~~f~~ll~ 384 (416)
T 3tnp_B 357 K---P----------------------------RAASAHAIGTVKCLAMDVQAFERLLG 384 (416)
T ss_dssp S---C----------------------------CSSEEEEEEEEEEEEEEHHHHHHHHC
T ss_pred C---C----------------------------ceeEEEEcCCeEEEEEEHHHHHHHhc
Confidence 0 0 02399999999999999999987764
No 112
>1o5l_A Transcriptional regulator, CRP family; TM1171, structural GE JCSG, PSI, protein structure initiative, joint center for S genomics; 2.30A {Thermotoga maritima} SCOP: b.82.3.2
Probab=98.05 E-value=8.4e-06 Score=73.63 Aligned_cols=89 Identities=16% Similarity=0.174 Sum_probs=71.0
Q ss_pred HHhcCCCCCCCccccccccCcccceEEEEEeeEEEEEE----cCCcceeecCCccchhhhhcccccccCCCCCCCCCccc
Q psy4847 247 ITQKGTSQQKPTFKSLKKRNKPVDYFVLILEGRAEVVV----GKENLVYEAGPFSYFGCQALTQNIGIAESPTNNSSAAQ 322 (396)
Q Consensus 247 Ll~~~~v~~~~~~~~LY~~g~~~d~f~LIL~Grv~V~~----G~e~~~~E~gpfs~~G~~aL~~~~~~~~~~~~~~~~~~ 322 (396)
+..........+...||+.|++++++++|++|.|.+.. |++-...-.+|..+||+.++.... . |
T Consensus 18 l~~~~~~~~~~~g~~i~~~G~~~~~~y~v~~G~v~~~~~~~~G~~~~~~~~~~G~~~G~~~~~~~~----~------~-- 85 (213)
T 1o5l_A 18 LLPCGKVIVFRKGEIVKHQDDPIEDVLILLEGTLKTEHVSENGKTLEIDEIKPVQIIASGFIFSSE----P------R-- 85 (213)
T ss_dssp GGGGSEEEEECTTCEEECTTCBCCEEEEEEESCEEEEEECTTSCEEEEEEECSSEESSGGGTTSSS----C------B--
T ss_pred HhcccEEEEECCCCEEEcCCCccceEEEEEeeEEEEEEECCCCCEEEEEEecCCCEeeeHHHhcCC----C------C--
Confidence 33444455566778899999999999999999999985 777888899999999999876410 0 0
Q ss_pred ccCCCcccccccccCCcccccCcEEEEcCCeEEEEEeHHHHHHHH
Q psy4847 323 AYGGSLQSVNLDSILRYTFVPDYSVRATTEMFYVKIRRSFYLAAK 367 (396)
Q Consensus 323 ~~~~s~~~~~~~~~~~~~~~PD~sv~~~~d~~~~~Itr~~Y~~al 367 (396)
..++++|+++|..+.|++..+...+
T Consensus 86 --------------------~~~~~~A~~~~~v~~i~~~~~~~l~ 110 (213)
T 1o5l_A 86 --------------------FPVNVVAGENSKILSIPKEVFLDLL 110 (213)
T ss_dssp --------------------CSSEEEESSSEEEEEEEHHHHHHHH
T ss_pred --------------------ceEEEEEccceEEEEEeHHHHHHHH
Confidence 1249999999999999999877654
No 113
>1vr9_A CBS domain protein/ACT domain protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI; HET: MSE; 1.70A {Thermotoga maritima} SCOP: d.37.1.1
Probab=98.05 E-value=2.2e-06 Score=78.34 Aligned_cols=100 Identities=6% Similarity=0.042 Sum_probs=51.8
Q ss_pred ccccccccccCCCEEEEeCCCChhHHHHHHHHHcCCcEEEEEeCCCCcEEEEEEhhhhcccCCccccchhhhhhhhcCCc
Q psy4847 42 RKIVGDVMTKLEDVYMLSYDAILDFETVSEIMKSGYSRIPVYEDRRTNIVTMFYIKDLALVDPDDNTPLKTLCQFYQNSC 121 (396)
Q Consensus 42 ~~tV~dIMtp~~dv~~l~~d~~l~~e~i~~i~~~g~sriPV~~~~~~~IVGiL~vkDLl~~~~~~~~~l~~v~~~~~~~v 121 (396)
+.+|+++|++. ++++++++++. ++++.|.+++++++||++++ ++++|+|+.+||+...... ....+.+..+ . +
T Consensus 71 ~~~v~~im~~~--~~~v~~~~~l~-~a~~~m~~~~~~~lpVvd~~-g~lvGiit~~Dil~~~~~~-~~~~~~~~~l-~-~ 143 (213)
T 1vr9_A 71 DSSVFNKVSLP--DFFVHEEDNIT-HALLLFLEHQEPYLPVVDEE-MRLKGAVSLHDFLEALIEA-LAMDVPGIRF-S-V 143 (213)
T ss_dssp TSBSGGGCBCT--TCCEETTSBHH-HHHHHHHHCCCSEEEEECTT-CBEEEEEEHHHHHHHHHHS-CC------------
T ss_pred CCcHHHHccCC--CEEECCCCcHH-HHHHHHHHhCCCEEEEEcCC-CEEEEEEEHHHHHHHHHHH-hcCCCCcEEE-E-E
Confidence 45799999974 78899999999 99999999999999999865 7999999999997532111 1112222110 1 1
Q ss_pred eEEcCCCCHHHHHHHHHhcCCceEEEEE
Q psy4847 122 YFVFEDTTLDVLLKQFKEGIKGHMAFVH 149 (396)
Q Consensus 122 ~~V~~dt~L~~~L~~f~~~~~~h~avV~ 149 (396)
.......++.++++.|.+. +.+.++|.
T Consensus 144 ~~~~~~~~l~~~~~~l~~~-~~~~l~V~ 170 (213)
T 1vr9_A 144 LLEDKPGELRKVVDALALS-NINILSVI 170 (213)
T ss_dssp ----------------------------
T ss_pred EeCCCCccHHHHHHHHHHC-CCcEEEEE
Confidence 1113344599999999995 77877775
No 114
>1o7f_A CAMP-dependent RAP1 guanine-nucleotide exchange factor; EPAC2, CAMP-GEF2, campb binding doamin, regulation; 2.5A {Mus musculus} SCOP: a.4.5.31 b.82.3.2 b.82.3.2
Probab=98.04 E-value=1.4e-05 Score=80.72 Aligned_cols=96 Identities=15% Similarity=0.161 Sum_probs=75.9
Q ss_pred cHHHHHHHHhcCCCC-CCCccccccccCcccceEEEEEeeEEEEEEcCCcceeecCCccchhhhhcccccccCCCCCCCC
Q psy4847 240 VGSLLDRITQKGTSQ-QKPTFKSLKKRNKPVDYFVLILEGRAEVVVGKENLVYEAGPFSYFGCQALTQNIGIAESPTNNS 318 (396)
Q Consensus 240 ~e~vL~~Ll~~~~v~-~~~~~~~LY~~g~~~d~f~LIL~Grv~V~~G~e~~~~E~gpfs~~G~~aL~~~~~~~~~~~~~~ 318 (396)
++..+..|....... ...++..||+.|+++++|++|++|+|+|....++.....+|..+||+.++.... +
T Consensus 349 ~~~~~~~l~~~~~~~~~~~~g~~i~~~G~~~~~~yiI~~G~v~v~~~~~~~~~~l~~G~~fGe~~ll~~~-----~---- 419 (469)
T 1o7f_A 349 STTVKRELAGVLIFESHAKGGTVLFNQGEEGTSWYIILKGSVNVVIYGKGVVCTLHEGDDFGKLALVNDA-----P---- 419 (469)
T ss_dssp CHHHHHHHHHHCEEEEECSTTCEEECTTSCCCEEEEEEESEEEEEETTTEEEEEEETTCEECGGGGTCCS-----C----
T ss_pred CHHHHHHHHHHhheeeEecCCCEEEeCCCcCCeEEEEEEeEEEEEEcCCeeEEEecCCCEEEEehhhcCC-----C----
Confidence 344555565554322 466778899999999999999999999988655688999999999999987510 0
Q ss_pred CcccccCCCcccccccccCCcccccCcEEEEcC-CeEEEEEeHHHHHHHHH
Q psy4847 319 SAAQAYGGSLQSVNLDSILRYTFVPDYSVRATT-EMFYVKIRRSFYLAAKR 368 (396)
Q Consensus 319 ~~~~~~~~s~~~~~~~~~~~~~~~PD~sv~~~~-d~~~~~Itr~~Y~~al~ 368 (396)
-.+||+|.+ +|+++.|+|..|...+.
T Consensus 420 ------------------------~~~tv~a~~~~~~~~~i~~~~f~~ll~ 446 (469)
T 1o7f_A 420 ------------------------RAASIVLREDNCHFLRVDKEDFNRILR 446 (469)
T ss_dssp ------------------------CSSEEEESSSSEEEEEEEHHHHHHHHH
T ss_pred ------------------------ceEEEEEecCCEEEEEEcHHHHHHHHH
Confidence 124999998 79999999999987664
No 115
>4f7z_A RAP guanine nucleotide exchange factor 4; cyclic nucleotide, regulation, auto-IN CDC25 homology domain, exocytosis; 2.60A {Mus musculus} PDB: 2byv_E
Probab=98.04 E-value=1.6e-05 Score=88.57 Aligned_cols=96 Identities=16% Similarity=0.143 Sum_probs=78.2
Q ss_pred cHHHHHHHHhcCCCCCCCccccccccCcccceEEEEEeeEEEEEE------cCCcceeecCCccchhhhhcccccccCCC
Q psy4847 240 VGSLLDRITQKGTSQQKPTFKSLKKRNKPVDYFVLILEGRAEVVV------GKENLVYEAGPFSYFGCQALTQNIGIAES 313 (396)
Q Consensus 240 ~e~vL~~Ll~~~~v~~~~~~~~LY~~g~~~d~f~LIL~Grv~V~~------G~e~~~~E~gpfs~~G~~aL~~~~~~~~~ 313 (396)
.+..|+.|.++......+++..||+.|+++|+|++|++|+|+|.+ +.+...-+.+|+++||+ ||..+ .+++
T Consensus 54 ~~~~l~~l~~~m~ye~~~~Ge~IfrqGd~gd~fYIIlsGsV~V~i~~~~~~~~~~~v~~l~~G~sFGE-all~n--~pRt 130 (999)
T 4f7z_A 54 HPNLLRQICLCGYYENLEKGITLFRQGDIGTNWYAVLAGSLDVKVSETSSHQDAVTICTLGIGTAFGE-SILDN--TPRH 130 (999)
T ss_dssp CHHHHHHHHHHCEEEEECTTCEEECTTSCCCEEEEEEESEEEEEECSSSCTTSCEEEEEEETTCEECG-GGGGT--CCCS
T ss_pred CHHHHHHHHhheEEEEECCCCEEEcCCCcCCEEEEEEeeEEEEEEecCCCCCCceeEEEecCCcchhh-hhccC--CCcc
Confidence 456677788877777778888999999999999999999999998 34556679999999999 66541 1111
Q ss_pred CCCCCCcccccCCCcccccccccCCcccccCcEEEEcCCeEEEEEeHHHHHHHHHH
Q psy4847 314 PTNNSSAAQAYGGSLQSVNLDSILRYTFVPDYSVRATTEMFYVKIRRSFYLAAKRA 369 (396)
Q Consensus 314 ~~~~~~~~~~~~~s~~~~~~~~~~~~~~~PD~sv~~~~d~~~~~Itr~~Y~~al~a 369 (396)
. ||+|.++|..++|+|.+|...++.
T Consensus 131 a-------------------------------Tv~a~~~s~l~~l~r~~F~~i~~~ 155 (999)
T 4f7z_A 131 A-------------------------------TIVTRESSELLRIEQEDFKALWEK 155 (999)
T ss_dssp S-------------------------------EEEESSSEEEEEEEHHHHHHHHHH
T ss_pred e-------------------------------EEEeccceEEEEEEHHHHHHHHHh
Confidence 1 899999999999999999987753
No 116
>3e6c_C CPRK, cyclic nucleotide-binding protein; CPRK, halorespiration; HET: DNA 3C4; 1.80A {Desulfitobacterium hafniense} SCOP: a.4.5.4 b.82.3.2 PDB: 3e6b_A* 3e5u_C* 3e6d_A 3e5x_A* 3e5q_A 2h6b_A* 2h6c_A
Probab=98.00 E-value=6.3e-06 Score=76.22 Aligned_cols=92 Identities=17% Similarity=0.169 Sum_probs=75.7
Q ss_pred HHHHHHHHhcCCCCCCCccccccccCcccceEEEEEeeEEEEEE----cCCcceeecCCccchhhhhcccccccCCCCCC
Q psy4847 241 GSLLDRITQKGTSQQKPTFKSLKKRNKPVDYFVLILEGRAEVVV----GKENLVYEAGPFSYFGCQALTQNIGIAESPTN 316 (396)
Q Consensus 241 e~vL~~Ll~~~~v~~~~~~~~LY~~g~~~d~f~LIL~Grv~V~~----G~e~~~~E~gpfs~~G~~aL~~~~~~~~~~~~ 316 (396)
+..+..|..........++..||+.|++++++++|++|.|++.. |++-...-.+|..+||+ .+..
T Consensus 22 ~~~l~~l~~~~~~~~~~~g~~i~~~G~~~~~~y~i~~G~v~~~~~~~~G~~~~~~~~~~G~~~G~-~l~~---------- 90 (250)
T 3e6c_C 22 IEKLRNYTQMGLIRDFAKGSAVIMPGEEITSMIFLVEGKIKLDIIFEDGSEKLLYYAGGNSLIGK-LYPT---------- 90 (250)
T ss_dssp CGGGGGGGGGSEEEEECTTCEEECTTCCCCSEEEEEESCEEEEEECTTSCEEEEEEECTTCEECC-CSCC----------
T ss_pred HHHHHHHHhhCeEEEECCCCEEECCCCCCCeEEEEEeeEEEEEEECCCCCEEEEEEecCCCEEee-ecCC----------
Confidence 34456666666677778888999999999999999999999987 77778899999999999 4432
Q ss_pred CCCcccccCCCcccccccccCCcccccCcEEEEcCCeEEEEEeHHHHHHHHH
Q psy4847 317 NSSAAQAYGGSLQSVNLDSILRYTFVPDYSVRATTEMFYVKIRRSFYLAAKR 368 (396)
Q Consensus 317 ~~~~~~~~~~s~~~~~~~~~~~~~~~PD~sv~~~~d~~~~~Itr~~Y~~al~ 368 (396)
. ..++++|.++|+++.|++..+...+.
T Consensus 91 -----------------------~--~~~~~~A~~~~~v~~i~~~~~~~l~~ 117 (250)
T 3e6c_C 91 -----------------------G--NNIYATAMEPTRTCWFSEKSLRTVFR 117 (250)
T ss_dssp -----------------------S--CCEEEEESSSEEEEEECHHHHHHHHH
T ss_pred -----------------------C--CceEEEEcccEEEEEEcHHHHHHHHH
Confidence 1 23599999999999999999887654
No 117
>4esy_A CBS domain containing membrane protein; structural genomics, PSI-biology; 2.01A {Sphaerobacter thermophilus}
Probab=97.94 E-value=6.5e-06 Score=72.00 Aligned_cols=58 Identities=24% Similarity=0.297 Sum_probs=52.2
Q ss_pred ccccccccccccCCCEEEEeCCCChhHHHHHHHHHcCCcEEEEEeCCCCcEEEEEEhhhhccc
Q psy4847 40 LRRKIVGDVMTKLEDVYMLSYDAILDFETVSEIMKSGYSRIPVYEDRRTNIVTMFYIKDLALV 102 (396)
Q Consensus 40 l~~~tV~dIMtp~~dv~~l~~d~~l~~e~i~~i~~~g~sriPV~~~~~~~IVGiL~vkDLl~~ 102 (396)
....+|+++|++. ++++++++++. ++++.|.++++.++||+++ |+++|+|+.+||+..
T Consensus 102 ~~~~~v~~im~~~--~~tv~~~~~l~-~a~~~m~~~~~~~lpVvd~--g~lvGivt~~Dil~~ 159 (170)
T 4esy_A 102 GRKLTASAVMTQP--VVTAAPEDSVG-SIADQMRRHGIHRIPVVQD--GVPVGIVTRRDLLKL 159 (170)
T ss_dssp HTTCBHHHHCBCC--SCCBCTTSBHH-HHHHHHHHTTCSEEEEEET--TEEEEEEEHHHHTTT
T ss_pred ccccchhhhcccC--cccCCcchhHH-HHHHHHHHcCCcEEEEEEC--CEEEEEEEHHHHHHH
Confidence 3567899999965 78999999999 9999999999999999974 799999999999864
No 118
>3kpb_A Uncharacterized protein MJ0100; CBS domain, S-adenosylmethionine, conformational change, unknown function; HET: SAM; 1.60A {Methanocaldococcus jannaschii} SCOP: d.37.1.0 PDB: 3kpd_A* 3kpc_A*
Probab=97.91 E-value=1.8e-05 Score=64.49 Aligned_cols=72 Identities=21% Similarity=0.298 Sum_probs=57.7
Q ss_pred cCCCCHHHHHHHHHHhcccccccccccccCCCEEEEeCCCChhHHHHHHHHHcCCcEEEEEeCCCCcEEEEEEhhhhcc
Q psy4847 23 FNDLEKDEVNIISGALELRRKIVGDVMTKLEDVYMLSYDAILDFETVSEIMKSGYSRIPVYEDRRTNIVTMFYIKDLAL 101 (396)
Q Consensus 23 ~~~l~~~E~~~i~~alel~~~tV~dIMtp~~dv~~l~~d~~l~~e~i~~i~~~g~sriPV~~~~~~~IVGiL~vkDLl~ 101 (396)
.|-++..+.. +++.-...+|+++|++. +.+++.++++. ++++.|.+++++++||++++ |+++|+|+.+||+.
T Consensus 45 ~G~vt~~dl~---~~~~~~~~~v~~~~~~~--~~~v~~~~~l~-~~~~~~~~~~~~~l~Vvd~~-g~~~Givt~~dl~~ 116 (122)
T 3kpb_A 45 VGIITSWDIA---KALAQNKKTIEEIMTRN--VITAHEDEPVD-HVAIKMSKYNISGVPVVDDY-RRVVGIVTSEDISR 116 (122)
T ss_dssp EEEECHHHHH---HHHHTTCCBGGGTSBSS--CCCEETTSBHH-HHHHHHHHHTCSEEEEECTT-CBEEEEEEHHHHHH
T ss_pred EEEEEHHHHH---HHHHhcccCHHHHhcCC--CeEECCCCCHH-HHHHHHHHhCCCeEEEECCC-CCEEEEEeHHHHHH
Confidence 3556655543 23333455899999864 78899999999 99999999999999999765 89999999999975
No 119
>2bgc_A PRFA; bacterial infection, human pathogen, transcriptional regulat transcription; HET: PR3; 2.3A {Listeria monocytogenes} SCOP: a.4.5.4 b.82.3.3 PDB: 2beo_A* 1omi_A
Probab=97.88 E-value=3.7e-05 Score=70.50 Aligned_cols=95 Identities=7% Similarity=0.052 Sum_probs=73.7
Q ss_pred HHHHHHHHh--cCCCCCCCccccccccCcccceEEEEEeeEEEEEE----cCCcceeecCCccchhhhhcccccccCCCC
Q psy4847 241 GSLLDRITQ--KGTSQQKPTFKSLKKRNKPVDYFVLILEGRAEVVV----GKENLVYEAGPFSYFGCQALTQNIGIAESP 314 (396)
Q Consensus 241 e~vL~~Ll~--~~~v~~~~~~~~LY~~g~~~d~f~LIL~Grv~V~~----G~e~~~~E~gpfs~~G~~aL~~~~~~~~~~ 314 (396)
+.-+..++. +.......+...||+.|++++++++|++|+|++.. |++-...-. |..+||+.++.... +
T Consensus 6 ~~~l~~ll~~~~~~~~~~~~ge~i~~~G~~~~~~y~I~~G~v~~~~~~~~G~e~~~~~~-~G~~~Ge~~~~~~~-----~ 79 (238)
T 2bgc_A 6 AEEFKKYLETNGIKPKQFHKKELIFNQWDPQEYCIFLYDGITKLTSISENGTIMNLQYY-KGAFVIMSGFIDTE-----T 79 (238)
T ss_dssp HHHHHHHHHHTTCCCEEEETTCEEECTTCCCCEEEEEEESEEEEEEECTTSCEEEEEEE-ESSEEEESBCTTTC-----C
T ss_pred HHHHHHHHHhCCceEEEECCCCEEEeCCCCCceEEEEEecEEEEEEECCCCCEEEEEEc-CCCEecchhhhcCC-----C
Confidence 455677774 35666678888999999999999999999999987 777666667 99999998877510 0
Q ss_pred CCCCCcccccCCCcccccccccCCcccccCcEEEEcC-CeEEEEEeHHHHHHHH
Q psy4847 315 TNNSSAAQAYGGSLQSVNLDSILRYTFVPDYSVRATT-EMFYVKIRRSFYLAAK 367 (396)
Q Consensus 315 ~~~~~~~~~~~~s~~~~~~~~~~~~~~~PD~sv~~~~-d~~~~~Itr~~Y~~al 367 (396)
.+ -.|++.|.+ +|.++.|++..+...+
T Consensus 80 -------------------------~~-~~~~~~a~~~~~~v~~i~~~~~~~l~ 107 (238)
T 2bgc_A 80 -------------------------SV-GYYNLEVISEQATAYVIKINELKELL 107 (238)
T ss_dssp -------------------------BS-CCCEEEECSSEEEEEEEEHHHHHHHH
T ss_pred -------------------------cC-cceeEEEEEcceEEEEEeHHHHHHHH
Confidence 00 035888985 9999999999887655
No 120
>3fv6_A YQZB protein; CBS domain dimer, metabolism regulator, central glycolytic G regulator, transcription; 1.95A {Bacillus subtilis} PDB: 3fwr_A* 3fws_A*
Probab=97.88 E-value=1.6e-05 Score=68.65 Aligned_cols=61 Identities=13% Similarity=0.266 Sum_probs=54.2
Q ss_pred cccccccccccccCCCEEEEeCCCChhHHHHHHHHHcCCcEEEEEeCCCC---cEEEEEEhhhhcc
Q psy4847 39 ELRRKIVGDVMTKLEDVYMLSYDAILDFETVSEIMKSGYSRIPVYEDRRT---NIVTMFYIKDLAL 101 (396)
Q Consensus 39 el~~~tV~dIMtp~~dv~~l~~d~~l~~e~i~~i~~~g~sriPV~~~~~~---~IVGiL~vkDLl~ 101 (396)
...+.+|+++|++..++++++.++++. ++++.|.++++.++||++++ + +++|+|+.+||+.
T Consensus 77 ~~~~~~v~~~m~~~~~~~~v~~~~~l~-~a~~~m~~~~~~~lpVvd~~-g~~~~~vGiit~~dil~ 140 (159)
T 3fv6_A 77 ELTSVPVHIIMTRMPNITVCRREDYVM-DIAKHLIEKQIDALPVIKDT-DKGFEVIGRVTKTNMTK 140 (159)
T ss_dssp CTTTCBGGGTSEETTSCCCBCTTSBHH-HHHHHHHHHTCSEEEEEEEC-SSSEEEEEEEEHHHHHH
T ss_pred cccCcCHHHHHcCCCCcEEECCCCCHH-HHHHHHHHcCCcEEEEEeCC-CcceeEEEEEEHHHHHH
Confidence 356789999999855688999999999 99999999999999999865 5 8999999999974
No 121
>2fmy_A COOA, carbon monoxide oxidation system transcription RE COOA-1; DNA transcription regulator, DNA binding protein; HET: HEM; 2.20A {Carboxydothermus hydrogenoformans} PDB: 2hkx_A*
Probab=97.87 E-value=1.5e-05 Score=71.95 Aligned_cols=85 Identities=13% Similarity=0.052 Sum_probs=69.4
Q ss_pred HHHHHHhcCCCCCCCccccccccCcccceEEEEEeeEEEEEE---cCCcceeecCCccchhhhhcccccccCCCCCCCCC
Q psy4847 243 LLDRITQKGTSQQKPTFKSLKKRNKPVDYFVLILEGRAEVVV---GKENLVYEAGPFSYFGCQALTQNIGIAESPTNNSS 319 (396)
Q Consensus 243 vL~~Ll~~~~v~~~~~~~~LY~~g~~~d~f~LIL~Grv~V~~---G~e~~~~E~gpfs~~G~~aL~~~~~~~~~~~~~~~ 319 (396)
.+..|..........+...||+.|++++++++|++|.|++.. |++-...-.||..+||+ . .
T Consensus 19 ~~~~l~~~~~~~~~~~g~~i~~~g~~~~~~y~i~~G~v~~~~~~~G~~~~~~~~~~G~~~G~----~------~------ 82 (220)
T 2fmy_A 19 EYSGVLKEFREQRYSKKAILYTPNTERNLVFLVKSGRVRVYLAYEDKEFTLAILEAGDIFCT----H------T------ 82 (220)
T ss_dssp GGTTTGGGSEEEEECTTCEEECTTCSSCEEEEEEESEEEEEEECSSCEEEEEEEETTCEEES----C------S------
T ss_pred HHHHHHHhhheeEeCCCCEEECCCCCCCeEEEEEecEEEEEECCCCCEEEEEEcCCCCEeCC----c------c------
Confidence 345556555566677888899999999999999999999954 77777888999999998 1 0
Q ss_pred cccccCCCcccccccccCCcccccCcEEEEcCCeEEEEEeHHHHHHHH
Q psy4847 320 AAQAYGGSLQSVNLDSILRYTFVPDYSVRATTEMFYVKIRRSFYLAAK 367 (396)
Q Consensus 320 ~~~~~~~s~~~~~~~~~~~~~~~PD~sv~~~~d~~~~~Itr~~Y~~al 367 (396)
.++++|+++|+++.|++..+...+
T Consensus 83 ------------------------~~~~~A~~~~~v~~i~~~~~~~l~ 106 (220)
T 2fmy_A 83 ------------------------RAFIQAMEDTTILYTDIRNFQNIV 106 (220)
T ss_dssp ------------------------SSEEEESSSEEEEEEEHHHHHHHH
T ss_pred ------------------------ceEEEEcCcEEEEEEeHHHHHHHH
Confidence 138999999999999999987655
No 122
>3b02_A Transcriptional regulator, CRP family; structural genomics, riken structural genomics/proteomics in RSGI; 1.92A {Thermus thermophilus} PDB: 2zdb_A
Probab=97.87 E-value=1.7e-05 Score=70.43 Aligned_cols=73 Identities=21% Similarity=0.199 Sum_probs=61.5
Q ss_pred CccccccccCcccceEEEEEeeEEEEEE----cCCcceeecCCccchhhhhcccccccCCCCCCCCCcccccCCCccccc
Q psy4847 257 PTFKSLKKRNKPVDYFVLILEGRAEVVV----GKENLVYEAGPFSYFGCQALTQNIGIAESPTNNSSAAQAYGGSLQSVN 332 (396)
Q Consensus 257 ~~~~~LY~~g~~~d~f~LIL~Grv~V~~----G~e~~~~E~gpfs~~G~~aL~~~~~~~~~~~~~~~~~~~~~~s~~~~~ 332 (396)
++...||+.|++++++++|++|+|++.. |++-.....+|..+||+ ++.... |
T Consensus 5 ~~g~~i~~~g~~~~~~y~i~~G~v~~~~~~~~g~~~~~~~~~~G~~~Ge-~~~~~~-----------~------------ 60 (195)
T 3b02_A 5 ARKETIYLRGEEARTLYRLEEGLVRVVELLPDGRLITLRHVLPGDYFGE-EALEGK-----------A------------ 60 (195)
T ss_dssp CTTCEEECTTSBCCCEEEEEESCEEEEEECTTSCEEEEEEECTTCEECG-GGGTCS-----------B------------
T ss_pred CCCCEEECCCCCCCeEEEEEeCEEEEEEECCCCCEEEEEEecCCCEech-hhhCCC-----------C------------
Confidence 4667899999999999999999999986 77778889999999999 876510 0
Q ss_pred ccccCCcccccCcEEEEcCCeEEEEEeHHHH
Q psy4847 333 LDSILRYTFVPDYSVRATTEMFYVKIRRSFY 363 (396)
Q Consensus 333 ~~~~~~~~~~PD~sv~~~~d~~~~~Itr~~Y 363 (396)
..++++|.++|.++.|++..+
T Consensus 61 ----------~~~~~~A~~~~~v~~i~~~~~ 81 (195)
T 3b02_A 61 ----------YRYTAEAMTEAVVQGLEPRAM 81 (195)
T ss_dssp ----------CSSEEEESSSEEEEEECGGGC
T ss_pred ----------ceeEEEECCcEEEEEEcHHHc
Confidence 124999999999999999765
No 123
>1o7f_A CAMP-dependent RAP1 guanine-nucleotide exchange factor; EPAC2, CAMP-GEF2, campb binding doamin, regulation; 2.5A {Mus musculus} SCOP: a.4.5.31 b.82.3.2 b.82.3.2
Probab=97.87 E-value=3.9e-05 Score=77.43 Aligned_cols=96 Identities=17% Similarity=0.147 Sum_probs=78.4
Q ss_pred cHHHHHHHHhcCCCCCCCccccccccCcccceEEEEEeeEEEEEE----cC--CcceeecCCccchhhhhcccccccCCC
Q psy4847 240 VGSLLDRITQKGTSQQKPTFKSLKKRNKPVDYFVLILEGRAEVVV----GK--ENLVYEAGPFSYFGCQALTQNIGIAES 313 (396)
Q Consensus 240 ~e~vL~~Ll~~~~v~~~~~~~~LY~~g~~~d~f~LIL~Grv~V~~----G~--e~~~~E~gpfs~~G~~aL~~~~~~~~~ 313 (396)
++..+..|..+.......++..||+.|+++++|++|++|+|.|.. |+ +......||..+||+.+ ... .
T Consensus 54 ~~~~~~~l~~~~~~~~~~~g~~i~~~Gd~~~~~y~i~~G~v~v~~~~~~g~~~~~~~~~~~~G~~fGe~~-l~~--~--- 127 (469)
T 1o7f_A 54 HPNLLRQICLCGYYENLEKGITLFRQGDIGTNWYAVLAGSLDVKVSETSSHQDAVTICTLGIGTAFGESI-LDN--T--- 127 (469)
T ss_dssp CHHHHHHHHHHCEEEEECTTCEEECTTSBCCEEEEEEESCEEEEECSSSCGGGCEEEEEECTTCEECGGG-GGT--C---
T ss_pred CHHHHHHHHHhceEEEECCCCEEEeCCCCCCcEEEEEeeEEEEEEecCCCCCcceEEEEccCCCCcchhh-hCC--C---
Confidence 566688888877777778888999999999999999999999987 32 35788999999999987 431 0
Q ss_pred CCCCCCcccccCCCcccccccccCCcccccCcEEEEcCCeEEEEEeHHHHHHHHHH
Q psy4847 314 PTNNSSAAQAYGGSLQSVNLDSILRYTFVPDYSVRATTEMFYVKIRRSFYLAAKRA 369 (396)
Q Consensus 314 ~~~~~~~~~~~~~s~~~~~~~~~~~~~~~PD~sv~~~~d~~~~~Itr~~Y~~al~a 369 (396)
+ -.++|+|.++|.++.|+|..|...+..
T Consensus 128 ~----------------------------~~~tv~A~~~~~l~~i~~~~~~~l~~~ 155 (469)
T 1o7f_A 128 P----------------------------RHATIVTRESSELLRIEQEDFKALWEK 155 (469)
T ss_dssp B----------------------------CSSEEEESSSEEEEEEEHHHHHHHHHH
T ss_pred C----------------------------ccceEEEccceeEEEEcHHHHHHHHHh
Confidence 0 023999999999999999999887653
No 124
>1pbj_A Hypothetical protein; structural genomics, domain, PSI, protein structure initiative; 1.40A {Methanothermobacter thermautotrophicusdelta H} SCOP: d.37.1.1
Probab=97.82 E-value=2.2e-05 Score=64.18 Aligned_cols=74 Identities=22% Similarity=0.208 Sum_probs=59.5
Q ss_pred cCCCCHHHHH-HHHHHhcccccccccccccCCCEEEEeCCCChhHHHHHHHHHcCCcEEEEEeCCCCcEEEEEEhhhhcc
Q psy4847 23 FNDLEKDEVN-IISGALELRRKIVGDVMTKLEDVYMLSYDAILDFETVSEIMKSGYSRIPVYEDRRTNIVTMFYIKDLAL 101 (396)
Q Consensus 23 ~~~l~~~E~~-~i~~alel~~~tV~dIMtp~~dv~~l~~d~~l~~e~i~~i~~~g~sriPV~~~~~~~IVGiL~vkDLl~ 101 (396)
.|-++..+.. .+..-..+.+.+|+++|++. +.+++.++++. ++++.|.+++++++||+++ |+++|+|+.+||+.
T Consensus 44 ~G~it~~dl~~~~~~~~~~~~~~v~~~m~~~--~~~v~~~~~l~-~~~~~~~~~~~~~l~Vvd~--~~~~Gvit~~dl~~ 118 (125)
T 1pbj_A 44 VGIVTTWDVLEAIAEGDDLAEVKVWEVMERD--LVTISPRATIK-EAAEKMVKNVVWRLLVEED--DEIIGVISATDILR 118 (125)
T ss_dssp EEEEEHHHHHHHHHHTCCTTTSBHHHHCBCG--GGEECTTSCHH-HHHHHHHHHTCSEEEEEET--TEEEEEEEHHHHHH
T ss_pred EEEEeHHHHHHHHhcCCcccccCHHHHcCCC--CeEECCCCCHH-HHHHHHHhcCCcEEEEEEC--CEEEEEEEHHHHHH
Confidence 3556666643 22232345688999999864 78999999999 9999999999999999986 79999999999974
No 125
>4gqw_A CBS domain-containing protein CBSX1, chloroplasti; thioredoxin, plant, protein binding; 2.20A {Arabidopsis thaliana}
Probab=97.80 E-value=1.6e-05 Score=67.07 Aligned_cols=57 Identities=21% Similarity=0.420 Sum_probs=50.9
Q ss_pred cccccccccccCCCEEEEeCCCChhHHHHHHHHHcCCcEEEEEeCCCCcEEEEEEhhhhcc
Q psy4847 41 RRKIVGDVMTKLEDVYMLSYDAILDFETVSEIMKSGYSRIPVYEDRRTNIVTMFYIKDLAL 101 (396)
Q Consensus 41 ~~~tV~dIMtp~~dv~~l~~d~~l~~e~i~~i~~~g~sriPV~~~~~~~IVGiL~vkDLl~ 101 (396)
...+|+++|++. +++++.++++. ++++.|.+++++++||++++ |+++|+|+.+||+.
T Consensus 83 ~~~~v~~~m~~~--~~~v~~~~~l~-~a~~~~~~~~~~~l~Vvd~~-g~~~Giit~~dil~ 139 (152)
T 4gqw_A 83 NGKLVGDLMTPA--PLVVEEKTNLE-DAAKILLETKYRRLPVVDSD-GKLVGIITRGNVVR 139 (152)
T ss_dssp -CCBHHHHSEES--CCCEESSSBHH-HHHHHHHHSSCCEEEEECTT-SBEEEEEEHHHHHH
T ss_pred ccccHHHhcCCC--ceEECCCCcHH-HHHHHHHHCCCCEEEEECCC-CcEEEEEEHHHHHH
Confidence 467899999974 67899999999 99999999999999999755 89999999999975
No 126
>3fio_A A cystathionine beta-synthase domain protein fused to A Zn-ribbon-like domain; PF1953,APC40009,cystathionine beta-synthase domain protein; 1.81A {Pyrococcus furiosus} PDB: 3ghd_A
Probab=97.79 E-value=3.1e-05 Score=57.28 Aligned_cols=49 Identities=22% Similarity=0.355 Sum_probs=42.8
Q ss_pred CceEEcCCCCHHHHHHHHHhcCCceEEEEEEeCCCCCCCCCCceeeeecHHHHHHHHHh
Q psy4847 120 SCYFVFEDTTLDVLLKQFKEGIKGHMAFVHRVNNEGEGDPFYETVGLITLEDVIEELIQ 178 (396)
Q Consensus 120 ~v~~V~~dt~L~~~L~~f~~~~~~h~avV~~~~~~~~~De~g~~vGIVTleDIiEeli~ 178 (396)
++.++.+++++.++++.|.+. +.+.++|+ |+ |+++|+||..|+++.+..
T Consensus 1 ~~~~v~~~~~~~~a~~~m~~~-~~~~~pV~--------d~-~~l~Givt~~dl~~~~~~ 49 (70)
T 3fio_A 1 KAIVVQPKDTVDRVAKILSRN-KAGSAVVM--------EG-DEILGVVTERDILDKVVA 49 (70)
T ss_dssp CEEEECTTCBHHHHHHHHHHT-TCSEEEEE--------ET-TEEEEEEEHHHHHHHTTT
T ss_pred CCeEECCCCcHHHHHHHHHHc-CCCEEEEE--------EC-CEEEEEEEHHHHHHHHHH
Confidence 457899999999999999995 67778887 66 899999999999999863
No 127
>2ef7_A Hypothetical protein ST2348; CBS-domain, structural genomics, NPPSFA, national project on structural and functional analyses; 2.10A {Sulfolobus tokodaii} SCOP: d.37.1.1
Probab=97.79 E-value=2.5e-05 Score=64.75 Aligned_cols=75 Identities=13% Similarity=0.216 Sum_probs=58.0
Q ss_pred cCCCCHHHHHHHHHHhcccccccccccccCCCEEEEeCCCChhHHHHHHHHHcCCcEEEEEeCCCCcEEEEEEhhhhcc
Q psy4847 23 FNDLEKDEVNIISGALELRRKIVGDVMTKLEDVYMLSYDAILDFETVSEIMKSGYSRIPVYEDRRTNIVTMFYIKDLAL 101 (396)
Q Consensus 23 ~~~l~~~E~~~i~~alel~~~tV~dIMtp~~dv~~l~~d~~l~~e~i~~i~~~g~sriPV~~~~~~~IVGiL~vkDLl~ 101 (396)
.|.++..+.......-...+.+|+++|++. +.+++.++++. ++++.|.++++.++||++++ |+++|+|+.+||+.
T Consensus 47 ~Givt~~dl~~~~~~~~~~~~~v~~~~~~~--~~~v~~~~~l~-~~~~~~~~~~~~~l~Vvd~~-g~~~Giit~~dll~ 121 (133)
T 2ef7_A 47 VGIITERDIVKAIGKGKSLETKAEEFMTAS--LITIREDSPIT-GALALMRQFNIRHLPVVDDK-GNLKGIISIRDITR 121 (133)
T ss_dssp EEEEEHHHHHHHHHTTCCTTCBGGGTSEEC--CCCEETTSBHH-HHHHHHHHHTCSEEEEECTT-SCEEEEEEHHHHHH
T ss_pred EEEEcHHHHHHHHhcCCCcccCHHHHcCCC--CEEECCCCCHH-HHHHHHHHcCCCEEEEECCC-CeEEEEEEHHHHHH
Confidence 455666665322111112367899999864 77899999999 99999999999999999755 79999999999974
No 128
>1ft9_A Carbon monoxide oxidation system transcription regulator; heme sensor, catabolite gene activator protein; HET: HEM; 2.60A {Rhodospirillum rubrum} SCOP: a.4.5.4 b.82.3.1
Probab=97.76 E-value=1.9e-05 Score=71.43 Aligned_cols=84 Identities=11% Similarity=-0.014 Sum_probs=67.0
Q ss_pred HHHHHhcCCCCCCCccccccccCcccceEEEEEeeEEEEEE---cCCcceeecCCccchhhhhcccccccCCCCCCCCCc
Q psy4847 244 LDRITQKGTSQQKPTFKSLKKRNKPVDYFVLILEGRAEVVV---GKENLVYEAGPFSYFGCQALTQNIGIAESPTNNSSA 320 (396)
Q Consensus 244 L~~Ll~~~~v~~~~~~~~LY~~g~~~d~f~LIL~Grv~V~~---G~e~~~~E~gpfs~~G~~aL~~~~~~~~~~~~~~~~ 320 (396)
+..|.........++...||+.|++++++++|++|+|++.. |++-...-.+|..+|| . +
T Consensus 16 ~~~l~~~~~~~~~~~g~~i~~~g~~~~~~y~i~~G~v~~~~~~~G~~~~~~~~~~G~~fG-----~-------~------ 77 (222)
T 1ft9_A 16 GETFFRGFRSKIHAKGSLVCTGEGDENGVFVVVDGRLRVYLVGEEREISLFYLTSGDMFC-----M-------H------ 77 (222)
T ss_dssp TTTTTTTCEEEEECTTCEEECTTCCCCCEEEEEESEEEEEEEETTEEEEEEEEETTCEEE-----S-------C------
T ss_pred HHHHHhhCcEEEECCCCEEECCCCCCCeEEEEEecEEEEEECCCCCEEEEEEcCCCCEec-----C-------C------
Confidence 44444444455567778899999999999999999999964 7777888899999999 1 1
Q ss_pred ccccCCCcccccccccCCcccccCcEEEEcCCeEEEEEeHHHHHHHH
Q psy4847 321 AQAYGGSLQSVNLDSILRYTFVPDYSVRATTEMFYVKIRRSFYLAAK 367 (396)
Q Consensus 321 ~~~~~~s~~~~~~~~~~~~~~~PD~sv~~~~d~~~~~Itr~~Y~~al 367 (396)
..++++|+++|.++.|++..+...+
T Consensus 78 ----------------------~~~~~~A~~~~~v~~i~~~~~~~l~ 102 (222)
T 1ft9_A 78 ----------------------SGCLVEATERTEVRFADIRTFEQKL 102 (222)
T ss_dssp ----------------------SSCEEEESSCEEEEEECHHHHHHHH
T ss_pred ----------------------CCEEEEEccceEEEEEeHHHHHHHH
Confidence 0138999999999999999987655
No 129
>4fry_A Putative signal-transduction protein with CBS DOM; CBS domain,ssgcid, structural genomics, niaid; HET: NAD AMP; 2.10A {Burkholderia ambifaria}
Probab=97.75 E-value=1.8e-05 Score=67.87 Aligned_cols=57 Identities=19% Similarity=0.289 Sum_probs=51.7
Q ss_pred ccccccccccccCCCEEEEeCCCChhHHHHHHHHHcCCcEEEEEeCCCCcEEEEEEhhhhcc
Q psy4847 40 LRRKIVGDVMTKLEDVYMLSYDAILDFETVSEIMKSGYSRIPVYEDRRTNIVTMFYIKDLAL 101 (396)
Q Consensus 40 l~~~tV~dIMtp~~dv~~l~~d~~l~~e~i~~i~~~g~sriPV~~~~~~~IVGiL~vkDLl~ 101 (396)
..+.+|+++|++. +.+++.++++. ++++.|.+++++++||++ + |+++|+|+.+||+.
T Consensus 75 ~~~~~v~~~m~~~--~~~v~~~~~l~-~~~~~m~~~~~~~lpVvd-~-g~~~Giit~~dil~ 131 (157)
T 4fry_A 75 SKATRVEEIMTAK--VRYVEPSQSTD-ECMALMTEHRMRHLPVLD-G-GKLIGLISIGDLVK 131 (157)
T ss_dssp SSSCBHHHHSBSS--CCCBCTTSBHH-HHHHHHHHHTCSEEEEEE-T-TEEEEEEEHHHHHH
T ss_pred ccccCHHHHcCCC--CcEECCCCcHH-HHHHHHHHcCCCEEEEEE-C-CEEEEEEEHHHHHH
Confidence 3578999999974 78899999999 999999999999999998 4 89999999999975
No 130
>3lfr_A Putative metal ION transporter; CBS, AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 1.53A {Pseudomonas syringae}
Probab=97.75 E-value=3.4e-05 Score=64.84 Aligned_cols=58 Identities=10% Similarity=0.061 Sum_probs=51.4
Q ss_pred ccccccccccccCCCEEEEeCCCChhHHHHHHHHHcCCcEEEEEeCCCCcEEEEEEhhhhccc
Q psy4847 40 LRRKIVGDVMTKLEDVYMLSYDAILDFETVSEIMKSGYSRIPVYEDRRTNIVTMFYIKDLALV 102 (396)
Q Consensus 40 l~~~tV~dIMtp~~dv~~l~~d~~l~~e~i~~i~~~g~sriPV~~~~~~~IVGiL~vkDLl~~ 102 (396)
..+.+|+++|++ +.++++++++. +++..|.+++..++||++++ |+++|+|+.+||+..
T Consensus 67 ~~~~~v~~~m~~---~~~v~~~~~l~-~~~~~m~~~~~~~~~Vvd~~-g~lvGiit~~Dil~~ 124 (136)
T 3lfr_A 67 GDSDDVKKLLRP---ATFVPESKRLN-VLLREFRANHNHMAIVIDEY-GGVAGLVTIEDVLEQ 124 (136)
T ss_dssp GGGCCGGGTCBC---CCEEETTCBHH-HHHHHHHHHTCCEEEEECTT-SCEEEEEEHHHHHTT
T ss_pred CCCcCHHHHcCC---CeEECCCCcHH-HHHHHHHhcCCeEEEEEeCC-CCEEEEEEHHHHHHH
Confidence 356789999976 57899999999 99999999999999999765 799999999999853
No 131
>2rc3_A CBS domain; in SITU proteolysis, BR, structural genomics, PSI-2, protein structure initiative; HET: NAD; 1.60A {Nitrosomonas europaea atcc 19718} SCOP: d.37.1.1
Probab=97.74 E-value=4.5e-05 Score=63.45 Aligned_cols=72 Identities=15% Similarity=0.287 Sum_probs=58.2
Q ss_pred cCCCCHHHHHHHHHHh----cccccccccccccCCCEEEEeCCCChhHHHHHHHHHcCCcEEEEEeCCCCcEEEEEEhhh
Q psy4847 23 FNDLEKDEVNIISGAL----ELRRKIVGDVMTKLEDVYMLSYDAILDFETVSEIMKSGYSRIPVYEDRRTNIVTMFYIKD 98 (396)
Q Consensus 23 ~~~l~~~E~~~i~~al----el~~~tV~dIMtp~~dv~~l~~d~~l~~e~i~~i~~~g~sriPV~~~~~~~IVGiL~vkD 98 (396)
.|.++..+. +..++ ...+.+|+++|++. +.+++.++++. ++++.|.+++..++||++ + |+++|+|+.+|
T Consensus 52 ~Givt~~dl--~~~~~~~~~~~~~~~v~~~m~~~--~~~v~~~~~l~-~~~~~m~~~~~~~lpVvd-~-g~~~Giit~~d 124 (135)
T 2rc3_A 52 VGILTERDF--SRKSYLLDKPVKDTQVKEIMTRQ--VAYVDLNNTNE-DCMALITEMRVRHLPVLD-D-GKVIGLLSIGD 124 (135)
T ss_dssp EEEEEHHHH--HHHGGGSSSCGGGSBGGGTSBCS--CCCBCTTCBHH-HHHHHHHHHTCSEEEEEE-T-TEEEEEEEHHH
T ss_pred EEEEehHHH--HHHHHHcCCCcccCCHHHhccCC--CeEECCCCcHH-HHHHHHHHhCCCEEEEEe-C-CEEEEEEEHHH
Confidence 355665553 33332 34678999999874 78899999999 999999999999999998 4 89999999999
Q ss_pred hcc
Q psy4847 99 LAL 101 (396)
Q Consensus 99 Ll~ 101 (396)
|+.
T Consensus 125 ll~ 127 (135)
T 2rc3_A 125 LVK 127 (135)
T ss_dssp HHH
T ss_pred HHH
Confidence 974
No 132
>3lhh_A CBS domain protein; structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG, cell membrane; HET: MSE AMP; 2.10A {Shewanella oneidensis}
Probab=97.72 E-value=8.9e-05 Score=64.96 Aligned_cols=71 Identities=11% Similarity=0.159 Sum_probs=56.4
Q ss_pred CCCCHHHHHHHHHHhcccccccccccccCCCEEEEeCCCChhHHHHHHHHHcCCcEEEEEeCCCCcEEEEEEhhhhcc
Q psy4847 24 NDLEKDEVNIISGALELRRKIVGDVMTKLEDVYMLSYDAILDFETVSEIMKSGYSRIPVYEDRRTNIVTMFYIKDLAL 101 (396)
Q Consensus 24 ~~l~~~E~~~i~~alel~~~tV~dIMtp~~dv~~l~~d~~l~~e~i~~i~~~g~sriPV~~~~~~~IVGiL~vkDLl~ 101 (396)
|-++..+. +.....-.+.+|+++| + ++.++++++++. +++..|.+++..++||++++ |+++|+|+.+||+.
T Consensus 90 Givt~~dl--~~~~~~~~~~~v~~im-~--~~~~v~~~~~l~-~a~~~m~~~~~~~~pVvd~~-g~lvGiit~~Dil~ 160 (172)
T 3lhh_A 90 GIISAKQL--LSESIAGERLELVDLV-K--NCNFVPNSLSGM-ELLEHFRTTGSQMVFVVDEY-GDLKGLVTLQDMMD 160 (172)
T ss_dssp EEEEHHHH--HHHHHTTCCCCGGGGC-B--CCEEEETTCCHH-HHHHHHHHHTCSEEEEECTT-SCEEEEEEHHHHHH
T ss_pred EEEEHHHH--HHHHhhcCcccHHHHh-c--CCeEeCCCCCHH-HHHHHHHHcCCeEEEEEeCC-CCEEEEeeHHHHHH
Confidence 44555443 3333333477899999 3 368999999999 99999999999999999765 79999999999974
No 133
>1pvm_A Conserved hypothetical protein TA0289; structural genomics, CBS domain, PSI, protein structure initiative; 1.50A {Thermoplasma acidophilum dsm 1728} SCOP: d.37.1.1 g.41.13.1 PDB: 2qh1_A
Probab=97.72 E-value=7e-05 Score=66.20 Aligned_cols=74 Identities=18% Similarity=0.201 Sum_probs=59.2
Q ss_pred CCCCHHHHHHHHHHh----cccccccccccccCCCEEEEeCCCChhHHHHHHHHHcCCcEEEEEeCCCCcEEEEEEhhhh
Q psy4847 24 NDLEKDEVNIISGAL----ELRRKIVGDVMTKLEDVYMLSYDAILDFETVSEIMKSGYSRIPVYEDRRTNIVTMFYIKDL 99 (396)
Q Consensus 24 ~~l~~~E~~~i~~al----el~~~tV~dIMtp~~dv~~l~~d~~l~~e~i~~i~~~g~sriPV~~~~~~~IVGiL~vkDL 99 (396)
|.++..+. +.... .....+|+++|++. +.+++.++++. ++++.|.+++.+++||++++ ++++|+|+.+||
T Consensus 54 Givt~~dl--~~~~~~~~~~~~~~~v~~im~~~--~~~v~~~~~l~-~a~~~m~~~~~~~lpVvd~~-g~~~Givt~~dl 127 (184)
T 1pvm_A 54 GLLSERSI--IKRFIPRNKKPDEVPIRLVMRKP--IPKVKSDYDVK-DVAAYLSENGLERCAVVDDP-GRVVGIVTLTDL 127 (184)
T ss_dssp EEEEHHHH--HHHTGGGCCCGGGSBGGGTSBSS--CCEEETTCBHH-HHHHHHHHHTCSEEEEECTT-CCEEEEEEHHHH
T ss_pred EEEeHHHH--HHHHhhcccCcccCCHHHHhCCC--CcEECCCCCHH-HHHHHHHHcCCcEEEEEcCC-CeEEEEEEHHHH
Confidence 45555543 33332 24678999999864 78999999999 99999999999999999865 799999999999
Q ss_pred cccC
Q psy4847 100 ALVD 103 (396)
Q Consensus 100 l~~~ 103 (396)
+..-
T Consensus 128 l~~~ 131 (184)
T 1pvm_A 128 SRYL 131 (184)
T ss_dssp TTTS
T ss_pred HHHH
Confidence 8643
No 134
>3jtf_A Magnesium and cobalt efflux protein; CBS domain, CORC, AMP, structural genomics, PSI-2, protein S initiative; HET: MSE AMP; 2.00A {Bordetella parapertussis}
Probab=97.71 E-value=3.7e-05 Score=63.93 Aligned_cols=56 Identities=11% Similarity=0.070 Sum_probs=49.7
Q ss_pred cccccccccccCCCEEEEeCCCChhHHHHHHHHHcCCcEEEEEeCCCCcEEEEEEhhhhcc
Q psy4847 41 RRKIVGDVMTKLEDVYMLSYDAILDFETVSEIMKSGYSRIPVYEDRRTNIVTMFYIKDLAL 101 (396)
Q Consensus 41 ~~~tV~dIMtp~~dv~~l~~d~~l~~e~i~~i~~~g~sriPV~~~~~~~IVGiL~vkDLl~ 101 (396)
.+.+++++|++ ++++++++++. ++++.|.+++..++||++++ |+++|+|+.+|++.
T Consensus 67 ~~~~v~~~m~~---~~~v~~~~~l~-~~~~~m~~~~~~~~pVvd~~-g~~~Giit~~Dil~ 122 (129)
T 3jtf_A 67 PALDIRSLVRP---AVFIPEVKRLN-VLLREFRASRNHLAIVIDEH-GGISGLVTMEDVLE 122 (129)
T ss_dssp TTSCGGGGCBC---CCEEETTCBHH-HHHHHHHTSSCCEEEEECC--CCEEEEEEHHHHHH
T ss_pred CCcCHHHHhCC---CeEeCCCCcHH-HHHHHHHhcCCeEEEEEeCC-CCEEEEEEHHHHHH
Confidence 46789999975 57899999999 99999999999999999765 79999999999974
No 135
>2rih_A Conserved protein with 2 CBS domains; bateman domain, AMP binding protein, ligand-BIND protein; 2.10A {Pyrobaculum aerophilum} SCOP: d.37.1.1 PDB: 2rif_A
Probab=97.71 E-value=5.4e-05 Score=63.55 Aligned_cols=71 Identities=10% Similarity=0.156 Sum_probs=56.5
Q ss_pred CCCCHHHHHHHHHHhc--ccccccccccccCCCEEEEeCCCChhHHHHHHHHHcCCcEEEEEeCCCCcEEEEEEhhhhcc
Q psy4847 24 NDLEKDEVNIISGALE--LRRKIVGDVMTKLEDVYMLSYDAILDFETVSEIMKSGYSRIPVYEDRRTNIVTMFYIKDLAL 101 (396)
Q Consensus 24 ~~l~~~E~~~i~~ale--l~~~tV~dIMtp~~dv~~l~~d~~l~~e~i~~i~~~g~sriPV~~~~~~~IVGiL~vkDLl~ 101 (396)
|.++..+.. ..... ..+.+|+++|++. +.+++.+ ++. ++++.|.+++..++||++++ |+++|+|+.+||+.
T Consensus 52 Givt~~dl~--~~~~~~~~~~~~v~~~m~~~--~~~v~~~-~l~-~a~~~m~~~~~~~l~Vvd~~-g~~~Giit~~dll~ 124 (141)
T 2rih_A 52 AVVSERDIL--RAVAQRLDLDGPAMPIANSP--ITVLDTD-PVH-VAAEKMRRHNIRHVVVVNKN-GELVGVLSIRDLCF 124 (141)
T ss_dssp EEEEHHHHH--HHHHTTCCTTSBSGGGCBCC--CEEETTS-BHH-HHHHHHHHHTCSEEEEECTT-SCEEEEEEHHHHHS
T ss_pred EEEEHHHHH--HHHhcCCCCCCCHHHHcCCC--CeEEcCC-CHH-HHHHHHHHcCCeEEEEEcCC-CcEEEEEEHHHHHH
Confidence 556655543 22111 2367899999864 7899999 999 99999999999999999854 89999999999975
No 136
>3sl7_A CBS domain-containing protein CBSX2; CBS-PAIR protein, redox regulator, plant CBS domain, thiored chloroplast, membrane protein; 1.91A {Arabidopsis thaliana}
Probab=97.70 E-value=2.3e-05 Score=68.27 Aligned_cols=58 Identities=17% Similarity=0.368 Sum_probs=51.9
Q ss_pred ccccccccccccCCCEEEEeCCCChhHHHHHHHHHcCCcEEEEEeCCCCcEEEEEEhhhhcc
Q psy4847 40 LRRKIVGDVMTKLEDVYMLSYDAILDFETVSEIMKSGYSRIPVYEDRRTNIVTMFYIKDLAL 101 (396)
Q Consensus 40 l~~~tV~dIMtp~~dv~~l~~d~~l~~e~i~~i~~~g~sriPV~~~~~~~IVGiL~vkDLl~ 101 (396)
....+|+++|++. +.+++.++++. ++++.|.++++.++||++++ |+++|+|+.+||+.
T Consensus 95 ~~~~~v~~~m~~~--~~~v~~~~~l~-~a~~~m~~~~~~~lpVvd~~-g~~vGiit~~dil~ 152 (180)
T 3sl7_A 95 TYGKVVGDLMTPS--PLVVRDSTNLE-DAARLLLETKFRRLPVVDAD-GKLIGILTRGNVVR 152 (180)
T ss_dssp TTTCBHHHHSEES--CCCEETTSBHH-HHHHHHTTSTTCEEEEECTT-CBEEEEEEHHHHHH
T ss_pred cccccHHHHhCCC--ceEeCCCCcHH-HHHHHHHHcCCCEEEEECCC-CeEEEEEEHHHHHH
Confidence 4577899999965 67899999999 99999999999999999755 89999999999974
No 137
>3lv9_A Putative transporter; CBS domain, PSI, MCSG, structural genomics, protein structur initiative, midwest center for structural genomics; 2.40A {Clostridium difficile 630}
Probab=97.69 E-value=8.1e-05 Score=63.10 Aligned_cols=71 Identities=11% Similarity=0.164 Sum_probs=56.1
Q ss_pred CCCCHHHHHHHHHHhcccccccccccccCCCEEEEeCCCChhHHHHHHHHHcCCcEEEEEeCCCCcEEEEEEhhhhcc
Q psy4847 24 NDLEKDEVNIISGALELRRKIVGDVMTKLEDVYMLSYDAILDFETVSEIMKSGYSRIPVYEDRRTNIVTMFYIKDLAL 101 (396)
Q Consensus 24 ~~l~~~E~~~i~~alel~~~tV~dIMtp~~dv~~l~~d~~l~~e~i~~i~~~g~sriPV~~~~~~~IVGiL~vkDLl~ 101 (396)
|-++..+... ....-.+.+|+++|. ++.++++++++. +++..|.+++..++||++++ |+++|+|+..||+.
T Consensus 71 Givt~~dl~~--~~~~~~~~~v~~~m~---~~~~v~~~~~l~-~~~~~m~~~~~~~l~Vvd~~-g~~~Giit~~dil~ 141 (148)
T 3lv9_A 71 GFVHIRDLYN--QKINENKIELEEILR---DIIYISENLTID-KALERIRKEKLQLAIVVDEY-GGTSGVVTIEDILE 141 (148)
T ss_dssp EEEEHHHHHH--HHHHHSCCCGGGTCB---CCEEEETTSBHH-HHHHHHHHHTCSEEEEECTT-SSEEEEEEHHHHHH
T ss_pred EEEEHHHHHH--HHhcCCCccHHHhcC---CCeEECCCCCHH-HHHHHHHhcCCeEEEEEeCC-CCEEEEEEHHHHHH
Confidence 4556555432 222222788999993 268899999999 99999999999999999765 79999999999974
No 138
>3nqr_A Magnesium and cobalt efflux protein CORC; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics; HET: AMP; 2.00A {Salmonella typhimurium}
Probab=97.67 E-value=4.2e-05 Score=63.27 Aligned_cols=56 Identities=13% Similarity=0.172 Sum_probs=50.0
Q ss_pred cccccccccccCCCEEEEeCCCChhHHHHHHHHHcCCcEEEEEeCCCCcEEEEEEhhhhcc
Q psy4847 41 RRKIVGDVMTKLEDVYMLSYDAILDFETVSEIMKSGYSRIPVYEDRRTNIVTMFYIKDLAL 101 (396)
Q Consensus 41 ~~~tV~dIMtp~~dv~~l~~d~~l~~e~i~~i~~~g~sriPV~~~~~~~IVGiL~vkDLl~ 101 (396)
.+.+|+++|++ +.++++++++. ++++.|.+++..++||++++ |+++|+|+.+||+.
T Consensus 67 ~~~~v~~~m~~---~~~v~~~~~l~-~a~~~m~~~~~~~lpVvd~~-g~~~Giit~~dll~ 122 (127)
T 3nqr_A 67 EAFSMDKVLRT---AVVVPESKRVD-RMLKEFRSQRYHMAIVIDEF-GGVSGLVTIEDILE 122 (127)
T ss_dssp CCCCHHHHCBC---CCEEETTCBHH-HHHHHHHHTTCCEEEEECTT-SCEEEEEEHHHHHH
T ss_pred CCCCHHHHcCC---CeEECCCCcHH-HHHHHHHhcCCeEEEEEeCC-CCEEEEEEHHHHHH
Confidence 56789999976 46899999999 99999999999999999765 79999999999975
No 139
>3oco_A Hemolysin-like protein containing CBS domains; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; 2.20A {Oenococcus oeni}
Probab=97.67 E-value=7.6e-05 Score=63.85 Aligned_cols=72 Identities=10% Similarity=0.060 Sum_probs=56.8
Q ss_pred cCCCCHHHHHHHHHHhcccccccccccccCCCEEEEeCCCChhHHHHHHHHHcCCcEEEEEeCCCCcEEEEEEhhhhcc
Q psy4847 23 FNDLEKDEVNIISGALELRRKIVGDVMTKLEDVYMLSYDAILDFETVSEIMKSGYSRIPVYEDRRTNIVTMFYIKDLAL 101 (396)
Q Consensus 23 ~~~l~~~E~~~i~~alel~~~tV~dIMtp~~dv~~l~~d~~l~~e~i~~i~~~g~sriPV~~~~~~~IVGiL~vkDLl~ 101 (396)
.|-++..+... ....-...+|+++| + ++.+++.++++. +++..|.+++..++||++++ |+++|+|+.+||+.
T Consensus 68 vGivt~~dl~~--~~~~~~~~~v~~~m-~--~~~~v~~~~~l~-~~~~~m~~~~~~~lpVvd~~-g~~vGivt~~dil~ 139 (153)
T 3oco_A 68 IGYAYNYDIVR--QARIDDKAKISTIM-R--DIVSVPENMKVP-DVMEEMSAHRVPMAIVIDEY-GGTSGIITDKDVYE 139 (153)
T ss_dssp EEEEEHHHHHH--HHHHHTTSBGGGTC-B--CCEEEETTSBHH-HHHHHHHHTTCSCEEEECTT-SCEEEEECHHHHHH
T ss_pred EEEEEHHHHHh--HHhcCCCCcHHHHh-C--CCeEECCCCCHH-HHHHHHHHcCCcEEEEEeCC-CCEEEEeeHHHHHH
Confidence 35566555432 22222378899999 3 378999999999 99999999999999999765 89999999999974
No 140
>3fhm_A Uncharacterized protein ATU1752; CBS domain, prokaryotic, bound nucleotide, AMP, NADH, struct genomics, PSI-2; HET: AMP NAI; 2.70A {Agrobacterium tumefaciens str}
Probab=97.66 E-value=6.1e-05 Score=65.28 Aligned_cols=75 Identities=15% Similarity=0.180 Sum_probs=59.6
Q ss_pred cCCCCHHHHHH--HHHHhcccccccccccccCCCEEEEeCCCChhHHHHHHHHHcCCcEEEEEeCCCCcEEEEEEhhhhc
Q psy4847 23 FNDLEKDEVNI--ISGALELRRKIVGDVMTKLEDVYMLSYDAILDFETVSEIMKSGYSRIPVYEDRRTNIVTMFYIKDLA 100 (396)
Q Consensus 23 ~~~l~~~E~~~--i~~alel~~~tV~dIMtp~~dv~~l~~d~~l~~e~i~~i~~~g~sriPV~~~~~~~IVGiL~vkDLl 100 (396)
.|.++..+... ..+-....+.+|+++|++. +.+++.++++. ++++.|.+++++++||+++ |+++|+|+.+||+
T Consensus 71 ~Givt~~dl~~~~~~~~~~~~~~~v~~~m~~~--~~~v~~~~~l~-~a~~~m~~~~~~~lpVvd~--g~~~Giit~~dil 145 (165)
T 3fhm_A 71 LGIFTERDLVKAVAGQGAASLQQSVSVAMTKN--VVRCQHNSTTD-QLMEIMTGGRFRHVPVEEN--GRLAGIISIGDVV 145 (165)
T ss_dssp EEEEEHHHHHHHHHHHGGGGGTSBGGGTSBSS--CCCBCTTCBHH-HHHHHHHHHTCSEEEEEET--TEEEEEEEHHHHH
T ss_pred EEEEEHHHHHHHHHhcCCccccCCHHHHhcCC--CeEECCCCcHH-HHHHHHHHcCCCEEEEEEC--CEEEEEEEHHHHH
Confidence 45666665421 1221145678999999854 78899999999 9999999999999999987 8999999999997
Q ss_pred cc
Q psy4847 101 LV 102 (396)
Q Consensus 101 ~~ 102 (396)
..
T Consensus 146 ~~ 147 (165)
T 3fhm_A 146 KA 147 (165)
T ss_dssp HH
T ss_pred HH
Confidence 54
No 141
>1o50_A CBS domain-containing predicted protein TM0935; CBS-domain PAIR fold, structural genomics, joint center for structural genomics, JCSG; 1.87A {Thermotoga maritima} SCOP: d.37.1.1
Probab=97.66 E-value=2.8e-05 Score=66.75 Aligned_cols=57 Identities=19% Similarity=0.338 Sum_probs=51.3
Q ss_pred ccccccccccccCCCEEEEeCCCChhHHHHHHHHHcCCcEEEEEeCCCCcEEEEEEhhhhcc
Q psy4847 40 LRRKIVGDVMTKLEDVYMLSYDAILDFETVSEIMKSGYSRIPVYEDRRTNIVTMFYIKDLAL 101 (396)
Q Consensus 40 l~~~tV~dIMtp~~dv~~l~~d~~l~~e~i~~i~~~g~sriPV~~~~~~~IVGiL~vkDLl~ 101 (396)
..+.+|+++|++ +.+++.++++. ++++.|.++++.++||++++ ++++|+|+.+||+.
T Consensus 93 ~~~~~v~~im~~---~~~v~~~~~l~-~a~~~m~~~~~~~lpVvd~~-g~~vGiit~~dll~ 149 (157)
T 1o50_A 93 LIAKNASEIMLD---PVYVHMDTPLE-EALKLMIDNNIQEMPVVDEK-GEIVGDLNSLEILL 149 (157)
T ss_dssp CSSCBHHHHCBC---CCCBCTTSBHH-HHHHHHHHHTCSEEEEECTT-SCEEEEEEHHHHHH
T ss_pred HcCCcHHHHcCC---CeEECCCCCHH-HHHHHHHHCCCcEEEEEcCC-CEEEEEEEHHHHHH
Confidence 467889999996 67899999999 99999999999999999754 79999999999974
No 142
>1y5h_A Hypothetical protein RV2626C; CBS domain, unknown function; 1.50A {Mycobacterium tuberculosis} SCOP: d.37.1.1 PDB: 1xkf_A
Probab=97.65 E-value=3.9e-05 Score=63.60 Aligned_cols=58 Identities=17% Similarity=0.319 Sum_probs=51.8
Q ss_pred ccccccccccccCCCEEEEeCCCChhHHHHHHHHHcCCcEEEEEeCCCCcEEEEEEhhhhccc
Q psy4847 40 LRRKIVGDVMTKLEDVYMLSYDAILDFETVSEIMKSGYSRIPVYEDRRTNIVTMFYIKDLALV 102 (396)
Q Consensus 40 l~~~tV~dIMtp~~dv~~l~~d~~l~~e~i~~i~~~g~sriPV~~~~~~~IVGiL~vkDLl~~ 102 (396)
..+.+|+++|++. +.+++.++++. ++++.|.+++..++||+++ |+++|+|+.+||+..
T Consensus 71 ~~~~~v~~~m~~~--~~~v~~~~~l~-~~~~~m~~~~~~~l~Vvd~--g~~~Giit~~dil~~ 128 (133)
T 1y5h_A 71 PNTATAGELARDS--IYYVDANASIQ-EMLNVMEEHQVRRVPVISE--HRLVGIVTEADIARH 128 (133)
T ss_dssp TTTSBHHHHHTTC--CCCEETTCCHH-HHHHHHHHHTCSEEEEEET--TEEEEEEEHHHHHHT
T ss_pred ccccCHHHHhcCC--CEEECCCCCHH-HHHHHHHHcCCCEEEEEEC--CEEEEEEEHHHHHHH
Confidence 3568899999864 78899999999 9999999999999999986 799999999999753
No 143
>2nyc_A Nuclear protein SNF4; bateman2 domain, AMP kinase, protein binding; 1.90A {Saccharomyces cerevisiae} SCOP: d.37.1.1 PDB: 2nye_A
Probab=97.63 E-value=4.4e-05 Score=63.82 Aligned_cols=76 Identities=20% Similarity=0.210 Sum_probs=56.3
Q ss_pred CCCCHHHHHHHHH--HhcccccccccccccCC----CEEEEeCCCChhHHHHHHHHHcCCcEEEEEeCCCCcEEEEEEhh
Q psy4847 24 NDLEKDEVNIISG--ALELRRKIVGDVMTKLE----DVYMLSYDAILDFETVSEIMKSGYSRIPVYEDRRTNIVTMFYIK 97 (396)
Q Consensus 24 ~~l~~~E~~~i~~--alel~~~tV~dIMtp~~----dv~~l~~d~~l~~e~i~~i~~~g~sriPV~~~~~~~IVGiL~vk 97 (396)
|-++..+...... .+...+.+|+++|++.. ++.+++.++++. ++++.|.++++.++||++++ |+++|+|+.+
T Consensus 56 Givt~~dl~~~~~~~~~~~~~~~v~~~m~~~~~~~~~~~~v~~~~~l~-~~~~~m~~~~~~~l~Vvd~~-g~~~Giit~~ 133 (144)
T 2nyc_A 56 NVYEAYDVLGLIKGGIYNDLSLSVGEALMRRSDDFEGVYTCTKNDKLS-TIMDNIRKARVHRFFVVDDV-GRLVGVLTLS 133 (144)
T ss_dssp EEEEHHHHHHHHHTC----CCSBHHHHHHHCC------CEECTTSBHH-HHHHHHHHHTCSEEEEECTT-SBEEEEEEHH
T ss_pred EEEcHHHHHHHhcccccccCCccHHHHHhcCccccCCCeEECCCCcHH-HHHHHHHHCCCCEEEEECCC-CCEEEEEEHH
Confidence 5566655432111 11234678999998642 478999999999 99999999999999999765 8999999999
Q ss_pred hhcc
Q psy4847 98 DLAL 101 (396)
Q Consensus 98 DLl~ 101 (396)
||+.
T Consensus 134 dil~ 137 (144)
T 2nyc_A 134 DILK 137 (144)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 9974
No 144
>3gby_A Uncharacterized protein CT1051; CBS domain, structural genomics, PSI-2, protein structure initiative; HET: EPE; 1.66A {Chlorobium tepidum tls}
Probab=97.63 E-value=3.5e-05 Score=63.76 Aligned_cols=55 Identities=11% Similarity=0.110 Sum_probs=49.5
Q ss_pred cccccccccCCCEEEEeCCCChhHHHHHHHHHcCCcEEEEEeCCCCcEEEEEEhhhhcc
Q psy4847 43 KIVGDVMTKLEDVYMLSYDAILDFETVSEIMKSGYSRIPVYEDRRTNIVTMFYIKDLAL 101 (396)
Q Consensus 43 ~tV~dIMtp~~dv~~l~~d~~l~~e~i~~i~~~g~sriPV~~~~~~~IVGiL~vkDLl~ 101 (396)
.+|+++|++. +.+++.++++. ++++.|.++++.++||++++ |+++|+|+.+||+.
T Consensus 68 ~~v~~~m~~~--~~~v~~~~~l~-~~~~~~~~~~~~~lpVvd~~-g~~~Giit~~dll~ 122 (128)
T 3gby_A 68 EKLGEELLET--VRSYRPGEQLF-DNLISVAAAKCSVVPLADED-GRYEGVVSRKRILG 122 (128)
T ss_dssp CBCCGGGCBC--CCCBCTTSBGG-GSHHHHHHCSSSEEEEECTT-CBEEEEEEHHHHHH
T ss_pred CcHHHHccCC--CcEECCCCCHH-HHHHHHHhCCCcEEEEECCC-CCEEEEEEHHHHHH
Confidence 6699999864 77899999999 99999999999999999755 89999999999974
No 145
>3oi8_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: ADN; 1.99A {Neisseria meningitidis serogroup B}
Probab=97.62 E-value=5.3e-05 Score=65.23 Aligned_cols=55 Identities=7% Similarity=0.091 Sum_probs=49.6
Q ss_pred cccccccccccCCCEEEEeCCCChhHHHHHHHHHcCCcEEEEEeCCCCcEEEEEEhhhhc
Q psy4847 41 RRKIVGDVMTKLEDVYMLSYDAILDFETVSEIMKSGYSRIPVYEDRRTNIVTMFYIKDLA 100 (396)
Q Consensus 41 ~~~tV~dIMtp~~dv~~l~~d~~l~~e~i~~i~~~g~sriPV~~~~~~~IVGiL~vkDLl 100 (396)
.+.+|+++|+| +++++.++++. +++..|.+++..++||++++ |+++|+|+.+||+
T Consensus 101 ~~~~v~~im~~---~~~v~~~~~l~-~a~~~m~~~~~~~~~Vvd~~-g~~~Givt~~Dil 155 (156)
T 3oi8_A 101 EQFHLKSILRP---AVFVPEGKSLT-ALLKEFREQRNHMAIVIDEY-GGTSGLVTFEDII 155 (156)
T ss_dssp GGCCHHHHCBC---CCEEETTSBHH-HHHHHHHHTTCCEEEEECTT-SSEEEEEEHHHHC
T ss_pred CcccHHHHcCC---CEEECCCCCHH-HHHHHHHhcCCeEEEEECCC-CCEEEEEEHHHhc
Confidence 46789999976 57899999999 99999999999999999765 8999999999986
No 146
>2uv4_A 5'-AMP-activated protein kinase subunit gamma-1; transferase, CBS domain, lipid synthesis, fatty acid biosynthesis; HET: AMP; 1.33A {Homo sapiens} PDB: 2uv5_A* 2uv6_A* 2uv7_A*
Probab=97.62 E-value=5.8e-05 Score=64.44 Aligned_cols=59 Identities=12% Similarity=0.201 Sum_probs=51.1
Q ss_pred cccccccccccC----CCEEEEeCCCChhHHHHHHHHHcCCcEEEEEeCCCCcEEEEEEhhhhcc
Q psy4847 41 RRKIVGDVMTKL----EDVYMLSYDAILDFETVSEIMKSGYSRIPVYEDRRTNIVTMFYIKDLAL 101 (396)
Q Consensus 41 ~~~tV~dIMtp~----~dv~~l~~d~~l~~e~i~~i~~~g~sriPV~~~~~~~IVGiL~vkDLl~ 101 (396)
.+.+|.++|.+. .++.+++.++++. ++++.|.+++..++||++++ |+++|+|+..||+.
T Consensus 85 ~~~~v~~~m~~~~~~~~~~~~v~~~~~l~-~a~~~m~~~~~~~lpVvd~~-g~~vGiit~~dil~ 147 (152)
T 2uv4_A 85 LDVSVTKALQHRSHYFEGVLKCYLHETLE-TIINRLVEAEVHRLVVVDEN-DVVKGIVSLSDILQ 147 (152)
T ss_dssp TTSBGGGGGGTCCHHHHTCSEECTTSBHH-HHHHHHHHHTCSEEEEECTT-SBEEEEEEHHHHHH
T ss_pred hcchHHHHHhhhhcccCCCeEECCCCcHH-HHHHHHHHcCCeEEEEECCC-CeEEEEEEHHHHHH
Confidence 357899999742 3477999999999 99999999999999999865 79999999999974
No 147
>3i8n_A Uncharacterized protein VP2912; APC64273.1, vibrio parahaemolyticus RIMD 2210633, structural genomics, PSI-2; 2.15A {Vibrio parahaemolyticus}
Probab=97.57 E-value=7.7e-05 Score=61.92 Aligned_cols=73 Identities=12% Similarity=0.193 Sum_probs=57.2
Q ss_pred cCCCCHHHHHHHHHHhcccccccccccccCCCEEEEeCCCChhHHHHHHHHHcCCcEEEEEeCCCCcEEEEEEhhhhcc
Q psy4847 23 FNDLEKDEVNIISGALELRRKIVGDVMTKLEDVYMLSYDAILDFETVSEIMKSGYSRIPVYEDRRTNIVTMFYIKDLAL 101 (396)
Q Consensus 23 ~~~l~~~E~~~i~~alel~~~tV~dIMtp~~dv~~l~~d~~l~~e~i~~i~~~g~sriPV~~~~~~~IVGiL~vkDLl~ 101 (396)
.|-++..+....... ...+.+|+++|++ +.++++++++. ++++.|.+++..++||++++ |+++|+|+..|++.
T Consensus 53 ~Givt~~dl~~~~~~-~~~~~~v~~~m~~---~~~v~~~~~l~-~~~~~m~~~~~~~~~Vvd~~-g~~vGivt~~dil~ 125 (130)
T 3i8n_A 53 IGFVHRLELFKMQQS-GSGQKQLGAVMRP---IQVVLNNTALP-KVFDQMMTHRLQLALVVDEY-GTVLGLVTLEDIFE 125 (130)
T ss_dssp EEECCHHHHHHHHHT-TTTTSBHHHHSEE---CCEEETTSCHH-HHHHHHHHHTCCEEEEECTT-SCEEEEEEHHHHHH
T ss_pred EEEEEHHHHHHHHhc-CCCcCCHHHHhcC---CcCcCCCCcHH-HHHHHHHHcCCeEEEEEcCC-CCEEEEEEHHHHHH
Confidence 356676654422111 1246789999965 57899999999 99999999999999999765 79999999999974
No 148
>3ghd_A A cystathionine beta-synthase domain protein FUSE ribbon-like domain; PF1953,APC40009,cystathionine beta-synthase domain protein; 1.81A {Pyrococcus furiosus}
Probab=97.56 E-value=9.8e-05 Score=56.01 Aligned_cols=47 Identities=23% Similarity=0.345 Sum_probs=41.2
Q ss_pred ceEEcCCCCHHHHHHHHHhcCCceEEEEEEeCCCCCCCCCCceeeeecHHHHHHHHH
Q psy4847 121 CYFVFEDTTLDVLLKQFKEGIKGHMAFVHRVNNEGEGDPFYETVGLITLEDVIEELI 177 (396)
Q Consensus 121 v~~V~~dt~L~~~L~~f~~~~~~h~avV~~~~~~~~~De~g~~vGIVTleDIiEeli 177 (396)
+++|.+++++.+|++.|.++ +...++|+ | .|+++||||..||+..++
T Consensus 2 ~vtv~p~~tv~ea~~~M~~~-~i~~~~V~--------d-~~~lvGIvT~~Di~~~~~ 48 (70)
T 3ghd_A 2 AIVVQPKDTVDRVAKILSRN-KAGSAVVM--------E-GDEILGVVTERDILDKVV 48 (70)
T ss_dssp EEEECTTCBHHHHHHHHHHT-TCSEEEEE--------E-TTEEEEEEEHHHHHHHTT
T ss_pred CEEECCCCcHHHHHHHHHHc-CCCEEEEE--------E-CCEEEEEEEHHHHHHHHH
Confidence 57899999999999999995 77777777 5 489999999999998876
No 149
>2o16_A Acetoin utilization protein ACUB, putative; structural genomics, unknown function, PSI-2, protein struct initiative; 1.90A {Vibrio cholerae} SCOP: d.37.1.1
Probab=97.56 E-value=6.5e-05 Score=64.85 Aligned_cols=57 Identities=21% Similarity=0.173 Sum_probs=51.4
Q ss_pred ccccccccccccCCCEEEEeCCCChhHHHHHHHHHcCCcEEEEEeCCCCcEEEEEEhhhhcc
Q psy4847 40 LRRKIVGDVMTKLEDVYMLSYDAILDFETVSEIMKSGYSRIPVYEDRRTNIVTMFYIKDLAL 101 (396)
Q Consensus 40 l~~~tV~dIMtp~~dv~~l~~d~~l~~e~i~~i~~~g~sriPV~~~~~~~IVGiL~vkDLl~ 101 (396)
....+|+++|++ ++.++++++++. +++..|.+++..++||+++ |+++|+|+.+||+.
T Consensus 75 ~~~~~v~~im~~--~~~~v~~~~~l~-~a~~~m~~~~~~~lpVvd~--g~lvGiit~~dil~ 131 (160)
T 2o16_A 75 AFETPLFEVMHT--DVTSVAPQAGLK-ESAIYMQKHKIGCLPVVAK--DVLVGIITDSDFVT 131 (160)
T ss_dssp -CCCBHHHHSCS--CEEEBCTTSBHH-HHHHHHHHTTCSCEEEEET--TEEEEEECHHHHHH
T ss_pred hcccCHHHHhcC--CCeEECCCCCHH-HHHHHHHHhCCCEEEEEEC--CEEEEEEEHHHHHH
Confidence 357889999996 489999999999 9999999999999999976 79999999999975
No 150
>3cf6_E RAP guanine nucleotide exchange factor (GEF) 4; EPAC, rapgef4, CAMP, SP-camps, GEF, gunanine nucleotide exchange factor, G-protein, GTP-binding, nucleotide-binding; HET: SP1; 2.20A {Mus musculus}
Probab=97.53 E-value=0.00016 Score=77.72 Aligned_cols=96 Identities=15% Similarity=0.166 Sum_probs=78.0
Q ss_pred cHHHHHHHHhcCC-CCCCCccccccccCcccceEEEEEeeEEEEEEcCCcceeecCCccchhhhhcccccccCCCCCCCC
Q psy4847 240 VGSLLDRITQKGT-SQQKPTFKSLKKRNKPVDYFVLILEGRAEVVVGKENLVYEAGPFSYFGCQALTQNIGIAESPTNNS 318 (396)
Q Consensus 240 ~e~vL~~Ll~~~~-v~~~~~~~~LY~~g~~~d~f~LIL~Grv~V~~G~e~~~~E~gpfs~~G~~aL~~~~~~~~~~~~~~ 318 (396)
++..+..|..... .....++..||+.|++++++.+|++|+|++...........+|..+||+.++... . +
T Consensus 44 s~~~l~~L~~~~~~~~~~~kGe~I~~eGd~~~~lyiIlsG~V~v~~~g~~il~~l~~Gd~fGe~al~~~--~---~---- 114 (694)
T 3cf6_E 44 STTVKRELAGVLIFESHAKGGTVLFNQGEEGTSWYIILKGSVNVVIYGKGVVCTLHEGDDFGKLALVND--A---P---- 114 (694)
T ss_dssp CHHHHHHHHTTCEEEEECSTTCEEECTTSBCCEEEEEEESEEEEEETTTEEEEEEETTCEECHHHHHHT--C---B----
T ss_pred CHHHHHHHHHhcceEEEECCCCEEECCCCcCCeEEEEEEEEEEEEEeCCEEEEEeCCCCEeehHHHhCC--C---C----
Confidence 5677888887765 4567788899999999999999999999998743468889999999999888751 0 0
Q ss_pred CcccccCCCcccccccccCCcccccCcEEEEcC-CeEEEEEeHHHHHHHHH
Q psy4847 319 SAAQAYGGSLQSVNLDSILRYTFVPDYSVRATT-EMFYVKIRRSFYLAAKR 368 (396)
Q Consensus 319 ~~~~~~~~s~~~~~~~~~~~~~~~PD~sv~~~~-d~~~~~Itr~~Y~~al~ 368 (396)
-.++|+|.+ +|+++.|++..|...+.
T Consensus 115 ------------------------~~~tv~A~edd~~ll~I~~~~f~~ll~ 141 (694)
T 3cf6_E 115 ------------------------RAASIVLREDNCHFLRVDKEDFNRILR 141 (694)
T ss_dssp ------------------------CSSEEEECSSSEEEEEEEHHHHHHHTT
T ss_pred ------------------------ceEEEEEeeCceEEEEEeHHHHHHHHH
Confidence 124999999 59999999999987654
No 151
>2p9m_A Hypothetical protein MJ0922; structural genomics, collaboratory for structural genomics, secsg; 2.59A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID}
Probab=97.53 E-value=5.2e-05 Score=63.09 Aligned_cols=58 Identities=28% Similarity=0.384 Sum_probs=50.4
Q ss_pred ccccccccccccCCCEEEEeCCCChhHHHHHHHHHcC-----CcEEEEEeCCCCcEEEEEEhhhhcc
Q psy4847 40 LRRKIVGDVMTKLEDVYMLSYDAILDFETVSEIMKSG-----YSRIPVYEDRRTNIVTMFYIKDLAL 101 (396)
Q Consensus 40 l~~~tV~dIMtp~~dv~~l~~d~~l~~e~i~~i~~~g-----~sriPV~~~~~~~IVGiL~vkDLl~ 101 (396)
..+.+|+++|++. +.+++.++++. ++++.|.+++ ++++||++++ |+++|+|+.+||+.
T Consensus 70 ~~~~~v~~~m~~~--~~~v~~~~~l~-~~~~~~~~~~~~~~~~~~l~Vvd~~-g~~~Giit~~dll~ 132 (138)
T 2p9m_A 70 TLETTIGDVMTKD--VITIHEDASIL-EAIKKMDISGKKEEIINQLPVVDKN-NKLVGIISDGDIIR 132 (138)
T ss_dssp CSSCBHHHHSCSS--CCCEETTSBHH-HHHHHHTCC-----CCCEEEEECTT-SBEEEEEEHHHHHH
T ss_pred cCCcCHHHHhCCC--cEEECCCCCHH-HHHHHHHhcCCccccccEEEEECCC-CeEEEEEEHHHHHH
Confidence 4577999999864 78899999999 9999999999 9999999754 79999999999974
No 152
>3kxr_A Magnesium transporter, putative; cystathionine beta-synthase, Mg2+ transporter, structural GE PSI-2, protein structure initiative; 2.41A {Shewanella oneidensis mr-1}
Probab=97.52 E-value=9.1e-05 Score=67.43 Aligned_cols=59 Identities=12% Similarity=0.161 Sum_probs=52.2
Q ss_pred ccccccccccccCCCEEEEeCCCChhHHHHHHHHHcCCcEEEEEeCCCCcEEEEEEhhhhccc
Q psy4847 40 LRRKIVGDVMTKLEDVYMLSYDAILDFETVSEIMKSGYSRIPVYEDRRTNIVTMFYIKDLALV 102 (396)
Q Consensus 40 l~~~tV~dIMtp~~dv~~l~~d~~l~~e~i~~i~~~g~sriPV~~~~~~~IVGiL~vkDLl~~ 102 (396)
..+.+|+++|++. +++++.++++. ++++.|.++++..+||++++ |+++|+|+..|++..
T Consensus 113 ~~~~~v~~im~~~--~~~v~~~~~l~-~a~~~m~~~~~~~lpVVD~~-g~lvGiIT~~Dil~~ 171 (205)
T 3kxr_A 113 EPHEPLISLLSED--SRALTANTTLL-DAAEAIEHSREIELPVIDDA-GELIGRVTLRAATAL 171 (205)
T ss_dssp CTTSBGGGGCCSS--CCCEETTSCHH-HHHHHHHTSSCSEEEEECTT-SBEEEEEEHHHHHHH
T ss_pred CCcchHHHHhcCC--CeEECCCCCHH-HHHHHHHhcCCCEEEEEcCC-CeEEEEEEHHHHHHH
Confidence 3567899999854 78899999999 99999999999999999865 899999999999753
No 153
>3lqn_A CBS domain protein; csgid, structural genomics, unknown function, center for structural genomics of infectious diseases; 1.80A {Bacillus anthracis} SCOP: d.37.1.0
Probab=97.52 E-value=0.0001 Score=62.34 Aligned_cols=56 Identities=11% Similarity=0.159 Sum_probs=49.5
Q ss_pred ccccccccccccCCCEEEEeCCCChhHHHHHHHHHcCCcEEEEEeCCCCcEEEEEEhhhhcc
Q psy4847 40 LRRKIVGDVMTKLEDVYMLSYDAILDFETVSEIMKSGYSRIPVYEDRRTNIVTMFYIKDLAL 101 (396)
Q Consensus 40 l~~~tV~dIMtp~~dv~~l~~d~~l~~e~i~~i~~~g~sriPV~~~~~~~IVGiL~vkDLl~ 101 (396)
....+|+++|++. +.+++.++++. ++++.|.++++ +||++++ |+++|+|+.+||+.
T Consensus 84 ~~~~~v~~~m~~~--~~~v~~~~~l~-~a~~~~~~~~~--l~Vvd~~-g~~~Giit~~dil~ 139 (150)
T 3lqn_A 84 LEEMKVEQVMKQD--IPVLKLEDSFA-KALEMTIDHPF--ICAVNED-GYFEGILTRRAILK 139 (150)
T ss_dssp GGGCBGGGTCBSS--CCEEETTCBHH-HHHHHHHHCSE--EEEECTT-CBEEEEEEHHHHHH
T ss_pred HhcCCHHHHhcCC--CceeCCCCCHH-HHHHHHHhCCE--EEEECCC-CcEEEEEEHHHHHH
Confidence 3578999999954 78999999999 99999999987 9999755 89999999999975
No 154
>3hf7_A Uncharacterized CBS-domain protein; CSB-domain PAIR, AMP, PSI, MCSG, STR genomics, midwest center for structural genomics; HET: AMP; 2.75A {Klebsiella pneumoniae subsp}
Probab=97.52 E-value=7.3e-05 Score=62.37 Aligned_cols=56 Identities=11% Similarity=0.184 Sum_probs=49.3
Q ss_pred cccccccccccCCCEEEEeCCCChhHHHHHHHHHcCCcEEEEEeCCCCcEEEEEEhhhhcc
Q psy4847 41 RRKIVGDVMTKLEDVYMLSYDAILDFETVSEIMKSGYSRIPVYEDRRTNIVTMFYIKDLAL 101 (396)
Q Consensus 41 ~~~tV~dIMtp~~dv~~l~~d~~l~~e~i~~i~~~g~sriPV~~~~~~~IVGiL~vkDLl~ 101 (396)
...+|+++|.+ +.++++++++. ++++.|.+++..++||++++ |+++|+|+.+|++.
T Consensus 68 ~~~~v~~~m~~---~~~v~~~~~l~-~~~~~m~~~~~~~~~Vvd~~-g~lvGiit~~Dil~ 123 (130)
T 3hf7_A 68 TKEIMLRAADE---IYFVPEGTPLS-TQLVKFQRNKKKVGLVVDEY-GDIQGLVTVEDILE 123 (130)
T ss_dssp CHHHHHHHSBC---CCEEETTCBHH-HHHHHHHHHCCCEEEEECTT-SCEEEEEEHHHHHH
T ss_pred chhhHHHhccC---CeEeCCCCcHH-HHHHHHHhcCCeEEEEEcCC-CCEEEEeeHHHHHH
Confidence 35689999954 57899999999 99999999999999999765 89999999999974
No 155
>3k2v_A Putative D-arabinose 5-phosphate isomerase; KPSF-like protein, CBS domain, structural genomics, PSI-2, P structure initiative; HET: MSE CMK; 1.95A {Klebsiella pneumoniae subsp} PDB: 3fna_A*
Probab=97.49 E-value=0.00018 Score=61.10 Aligned_cols=57 Identities=16% Similarity=0.091 Sum_probs=48.1
Q ss_pred chhhhhhhhcC--CceEEcCCCCHHHHHHHHHhcCCceEEEEEEeCCCCCCCCCCceeeeecHHHHHHHHH
Q psy4847 109 PLKTLCQFYQN--SCYFVFEDTTLDVLLKQFKEGIKGHMAFVHRVNNEGEGDPFYETVGLITLEDVIEELI 177 (396)
Q Consensus 109 ~l~~v~~~~~~--~v~~V~~dt~L~~~L~~f~~~~~~h~avV~~~~~~~~~De~g~~vGIVTleDIiEeli 177 (396)
+++++| .+ +++++.+++++.++++.|.+. +.+.++|+ |+.|+++|+||..||+..+.
T Consensus 29 ~v~dim---~~~~~~~~v~~~~~~~~a~~~m~~~-~~~~~~Vv--------d~~~~~~Givt~~dl~~~~~ 87 (149)
T 3k2v_A 29 RVNDIM---HTGDEIPHVGLQATLRDALLEITRK-NLGMTAIC--------DDDMNIIGIFTDGDLRRVFD 87 (149)
T ss_dssp BGGGTS---BCGGGSCEECTTCBHHHHHHHHHHH-TSSEEEEE--------CTTCBEEEEEEHHHHHHHHC
T ss_pred CHHHHh---cCCCCCeEECCCCcHHHHHHHHHhC-CCcEEEEE--------CCCCcEEEEecHHHHHHHHh
Confidence 445554 56 789999999999999999985 66777777 87899999999999998875
No 156
>2j9l_A Chloride channel protein 5; ION channel, ION transport, voltage-gated; HET: ATP; 2.30A {Homo sapiens} SCOP: d.37.1.1 PDB: 2ja3_A*
Probab=97.46 E-value=0.00013 Score=63.67 Aligned_cols=57 Identities=11% Similarity=0.084 Sum_probs=51.2
Q ss_pred ccccccccccccCCCEEEEeCCCChhHHHHHHHHHcCCcEEEEEeCCCCcEEEEEEhhhhcc
Q psy4847 40 LRRKIVGDVMTKLEDVYMLSYDAILDFETVSEIMKSGYSRIPVYEDRRTNIVTMFYIKDLAL 101 (396)
Q Consensus 40 l~~~tV~dIMtp~~dv~~l~~d~~l~~e~i~~i~~~g~sriPV~~~~~~~IVGiL~vkDLl~ 101 (396)
....+|+++|++. +.+++.++++. +++..|.++++.++||++ + |+++|+|+.+||+.
T Consensus 105 ~~~~~v~~im~~~--~~~v~~~~~l~-~a~~~m~~~~~~~l~Vvd-~-g~~vGiit~~dll~ 161 (185)
T 2j9l_A 105 PPTLKLRNILDLS--PFTVTDLTPME-IVVDIFRKLGLRQCLVTH-N-GRLLGIITKKDVLK 161 (185)
T ss_dssp CCCEECGGGEESS--CCEEETTSBHH-HHHHHHHHHTCSEEEEEE-T-TEEEEEEEHHHHHH
T ss_pred ccCccHHHhhCcC--CeEeCCCCCHH-HHHHHHHhCCCcEEEEEE-C-CEEEEEEEHHHHHH
Confidence 4567899999864 78999999999 999999999999999998 3 89999999999975
No 157
>1me8_A Inosine-5'-monophosphate dehydrogenase; alpha beta barrel, oxidoreductase; HET: RVP; 1.90A {Tritrichomonas foetus} SCOP: c.1.5.1 PDB: 1ak5_A* 1me7_A* 1me9_A* 1meh_A* 1mei_A* 1mew_A* 1pvn_A* 1lrt_A*
Probab=97.45 E-value=5.6e-05 Score=78.30 Aligned_cols=102 Identities=16% Similarity=0.165 Sum_probs=17.9
Q ss_pred cccccccccccCCCEEEEeCCCChhHHHHHHHHHcCCcEEEEEeCCCCcEEEEEEhhhhcccCCccccchhhhhhhhcCC
Q psy4847 41 RRKIVGDVMTKLEDVYMLSYDAILDFETVSEIMKSGYSRIPVYEDRRTNIVTMFYIKDLALVDPDDNTPLKTLCQFYQNS 120 (396)
Q Consensus 41 ~~~tV~dIMtp~~dv~~l~~d~~l~~e~i~~i~~~g~sriPV~~~~~~~IVGiL~vkDLl~~~~~~~~~l~~v~~~~~~~ 120 (396)
.+.+|+++|++..++++++.++++. ++++.|.+++..++||++++ ++++|+|+.+||+....... ..++...-+ ..
T Consensus 159 ~~~~V~diM~~~~~~~tv~~~~sl~-ea~~~m~~~~i~~lpVVDe~-g~lvGiIT~~Dil~~~~~~~-~~~d~~~~l-~v 234 (503)
T 1me8_A 159 TETKVSDMMTPFSKLVTAHQDTKLS-EANKIIWEKKLNALPIIDDD-QHLRYIVFRKDYDRSQVCHN-ELVDSQKRY-LV 234 (503)
T ss_dssp -----------------------------------------------------------------CC-CCBCTTSCB-CC
T ss_pred ccCcHHHHhCCCCCCEEEcCCCcHH-HHHHHHHHcCCCEEEEEcCC-CeEEEEEEecHHHHhhhccc-chhcccccc-cc
Confidence 3567999999876789999999999 99999999999999999865 89999999999985432211 112221100 11
Q ss_pred ceEEcCCCCHHHHHHHHHhcCCceEEEE
Q psy4847 121 CYFVFEDTTLDVLLKQFKEGIKGHMAFV 148 (396)
Q Consensus 121 v~~V~~dt~L~~~L~~f~~~~~~h~avV 148 (396)
...+.. ....+.++.|.+. ..++.+|
T Consensus 235 ~a~v~~-~~~~e~~~~l~e~-gv~~l~V 260 (503)
T 1me8_A 235 GAGINT-RDFRERVPALVEA-GADVLCI 260 (503)
T ss_dssp EEEECS-SSHHHHHHHHHHH-TCSEEEE
T ss_pred ccccCc-hhHHHHHHHHHhh-hccceEE
Confidence 134455 5666667888775 5676555
No 158
>2yzi_A Hypothetical protein PH0107; sheet/helix/sheet/sheet/helix, structural genomics, unknown function, NPPSFA; 2.25A {Pyrococcus horikoshii} SCOP: d.37.1.1
Probab=97.41 E-value=0.00024 Score=59.14 Aligned_cols=57 Identities=21% Similarity=0.169 Sum_probs=47.4
Q ss_pred chhhhhhhhcCCceEEcCCCCHHHHHHHHHhcCCceEEEEEEeCCCCCCCCCCceeeeecHHHHHHHHH
Q psy4847 109 PLKTLCQFYQNSCYFVFEDTTLDVLLKQFKEGIKGHMAFVHRVNNEGEGDPFYETVGLITLEDVIEELI 177 (396)
Q Consensus 109 ~l~~v~~~~~~~v~~V~~dt~L~~~L~~f~~~~~~h~avV~~~~~~~~~De~g~~vGIVTleDIiEeli 177 (396)
+++++| .++++++++++++.++++.|.+. +.+.++|+ |+.|+++|+||..|++..++
T Consensus 8 ~v~~im---~~~~~~v~~~~~~~~a~~~~~~~-~~~~~~Vv--------d~~~~~~Givt~~dl~~~~~ 64 (138)
T 2yzi_A 8 PIKVYM---TKKLLGVKPSTSVQEASRLMMEF-DVGSLVVI--------NDDGNVVGFFTKSDIIRRVI 64 (138)
T ss_dssp BGGGTC---BCCCCEECTTSBHHHHHHHHHHH-TCSEEEEE--------CTTSCEEEEEEHHHHHHHTT
T ss_pred hHHHHh---cCCCeEECCCCcHHHHHHHHHHc-CCCEEEEE--------cCCCcEEEEEeHHHHHHHHH
Confidence 456665 47889999999999999999985 56677777 77799999999999986554
No 159
>3ctu_A CBS domain protein; structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.81A {Streptococcus pneumoniae TIGR4} PDB: 3k6e_A
Probab=97.41 E-value=0.00017 Score=61.53 Aligned_cols=60 Identities=13% Similarity=0.043 Sum_probs=48.2
Q ss_pred chhhhhhhhcCCceEEcCCCCHHHHHHHHHhcCCceEEEEEEeCCCCCCCCCCceeeeecHHHHHHHHHh
Q psy4847 109 PLKTLCQFYQNSCYFVFEDTTLDVLLKQFKEGIKGHMAFVHRVNNEGEGDPFYETVGLITLEDVIEELIQ 178 (396)
Q Consensus 109 ~l~~v~~~~~~~v~~V~~dt~L~~~L~~f~~~~~~h~avV~~~~~~~~~De~g~~vGIVTleDIiEeli~ 178 (396)
+++++|.. .+++.+|++++++.++++.|.+. +.+.++|+ |+.|+++|+||..||+..+..
T Consensus 16 ~v~dim~p-~~~~~~v~~~~~l~~a~~~m~~~-~~~~~~Vv--------d~~~~~~Giit~~dl~~~~~~ 75 (156)
T 3ctu_A 16 QEETFLTP-AKNLAVLIDTHNADHATLLLSQM-TYTRVPVV--------TDEKQFVGTIGLRDIMAYQME 75 (156)
T ss_dssp TGGGGEEE-GGGCCCEETTSBHHHHHHHHTTC-SSSEEEEE--------CC-CBEEEEEEHHHHHHHHHH
T ss_pred HHHHHcCc-ccCceEECCCCCHHHHHHHHHHC-CCceEeEE--------CCCCEEEEEEcHHHHHHHHHh
Confidence 44555431 15688999999999999999985 67777787 888999999999999999874
No 160
>2emq_A Hypothetical conserved protein; CBS domains, NPPSFA, national project on protein structural functional analyses; 2.50A {Geobacillus kaustophilus}
Probab=97.39 E-value=0.00017 Score=61.39 Aligned_cols=55 Identities=20% Similarity=0.248 Sum_probs=49.1
Q ss_pred cccccccccccCCCEEEEeCCCChhHHHHHHHHHcCCcEEEEEeCCCCcEEEEEEhhhhcc
Q psy4847 41 RRKIVGDVMTKLEDVYMLSYDAILDFETVSEIMKSGYSRIPVYEDRRTNIVTMFYIKDLAL 101 (396)
Q Consensus 41 ~~~tV~dIMtp~~dv~~l~~d~~l~~e~i~~i~~~g~sriPV~~~~~~~IVGiL~vkDLl~ 101 (396)
...+|+++|++. +.+++.++++. +++..|.++++ +||++++ |+++|+|+.+||+.
T Consensus 81 ~~~~v~~~m~~~--~~~v~~~~~l~-~a~~~m~~~~~--l~Vvd~~-g~~~Giit~~dil~ 135 (157)
T 2emq_A 81 ETMKVEEVMNRN--IPRLRLDDSLM-KAVGLIVNHPF--VCVENDD-GYFAGIFTRREVLK 135 (157)
T ss_dssp GTCBGGGTCBCC--CCEEETTSBHH-HHHHHHHHSSE--EEEECSS-SSEEEEEEHHHHHH
T ss_pred cCCcHHHHhCCC--CceecCCCcHH-HHHHHHhhCCE--EEEEcCC-CeEEEEEEHHHHHH
Confidence 578999999864 78999999999 99999999987 9999765 79999999999974
No 161
>2zcw_A TTHA1359, transcriptional regulator, FNR/CRP family; stationary phase, DNA-binding, transcription regulation; 1.50A {Thermus thermophilus}
Probab=97.37 E-value=7.8e-05 Score=66.37 Aligned_cols=76 Identities=16% Similarity=0.096 Sum_probs=60.8
Q ss_pred CCCCCCccccccccCccc--ceEEEEEeeEEEEEE----cCCcceeecCCccchhhhhcccccccCCCCCCCCCcccccC
Q psy4847 252 TSQQKPTFKSLKKRNKPV--DYFVLILEGRAEVVV----GKENLVYEAGPFSYFGCQALTQNIGIAESPTNNSSAAQAYG 325 (396)
Q Consensus 252 ~v~~~~~~~~LY~~g~~~--d~f~LIL~Grv~V~~----G~e~~~~E~gpfs~~G~~aL~~~~~~~~~~~~~~~~~~~~~ 325 (396)
......+...||+.|+++ +++++|++|.|.+.. |++-...-.||..+||+ ++... .+
T Consensus 6 ~~~~~~~g~~i~~~g~~~~~~~~y~v~~G~v~~~~~~~~G~~~~~~~~~~g~~~G~-~~l~~-----~~----------- 68 (202)
T 2zcw_A 6 ETVSFKAGDVILYPGVPGPRDRAYRVLEGLVRLEAVDEEGNALTLRLVRPGGFFGE-EALFG-----QE----------- 68 (202)
T ss_dssp CCEEECTTCEEECSBSCCTTCCCEEEEESCEEEEEECTTSCEEEEEEECTTCEECT-HHHHT-----CC-----------
T ss_pred eEEEECCCCEEECCCCCCCCCeEEEEEeCEEEEEEECCCCcEEEEEEecCCCEeee-hhcCC-----CC-----------
Confidence 344456777899999999 999999999999986 78888899999999999 54431 00
Q ss_pred CCcccccccccCCcccccCcEEEEcCCeEEEEEeHHH
Q psy4847 326 GSLQSVNLDSILRYTFVPDYSVRATTEMFYVKIRRSF 362 (396)
Q Consensus 326 ~s~~~~~~~~~~~~~~~PD~sv~~~~d~~~~~Itr~~ 362 (396)
..++++|+++|.++.| +..
T Consensus 69 -----------------~~~~~~A~~~~~v~~i-~~~ 87 (202)
T 2zcw_A 69 -----------------RIYFAEAATDVRLEPL-PEN 87 (202)
T ss_dssp -----------------BCSEEEESSCEEEEEC-CSS
T ss_pred -----------------cceEEEEcccEEEEEE-hHh
Confidence 1248999999999999 743
No 162
>3k6e_A CBS domain protein; streptococcus pneumoniae TIGR4, structural genomics, PSI-2, protein structure initiative; 2.81A {Streptococcus pneumoniae}
Probab=97.29 E-value=0.00028 Score=61.17 Aligned_cols=60 Identities=13% Similarity=0.040 Sum_probs=47.6
Q ss_pred hhhhhhhhcCCceEEcCCCCHHHHHHHHHhcCCceEEEEEEeCCCCCCCCCCceeeeecHHHHHHHHHhc
Q psy4847 110 LKTLCQFYQNSCYFVFEDTTLDVLLKQFKEGIKGHMAFVHRVNNEGEGDPFYETVGLITLEDVIEELIQA 179 (396)
Q Consensus 110 l~~v~~~~~~~v~~V~~dt~L~~~L~~f~~~~~~h~avV~~~~~~~~~De~g~~vGIVTleDIiEeli~~ 179 (396)
++++|.+ ...+.+|.+++++.+|+..|.+. +..-++|+ |+.|+++|+||..|++..+...
T Consensus 17 ~~~iM~P-~~~v~~v~~~~t~~~a~~~m~~~-~~s~~pVv--------d~~~~lvGiit~~Di~~~~~~~ 76 (156)
T 3k6e_A 17 EETFLTP-AKNLAVLIDTHNADHATLLLSQM-TYTRVPVV--------TDEKQFVGTIGLRDIMAYQMEH 76 (156)
T ss_dssp GGGGEEE-TTSSCCEETTSBHHHHHHHHTTS-SSSEEEEE--------CC-CBEEEEEEHHHHHHHHHHH
T ss_pred HHHhCcc-hhHeEEECCcCCHHHHHHHHHHc-CCcEEEEE--------cCCCcEEEEEEecchhhhhhhc
Confidence 4445432 24688999999999999999995 66666677 8889999999999999998743
No 163
>2pfi_A Chloride channel protein CLC-Ka; cystathionine beta synthetase (CBS) domains containing protein, transport protein; 1.60A {Homo sapiens}
Probab=97.25 E-value=0.00048 Score=58.76 Aligned_cols=58 Identities=14% Similarity=0.150 Sum_probs=48.8
Q ss_pred cchhhhhhhhcCCceEEcCCCCHHHHHHHHHhcCCceEEEEEEeCCCCCCCC--CCceeeeecHHHHHHHHH
Q psy4847 108 TPLKTLCQFYQNSCYFVFEDTTLDVLLKQFKEGIKGHMAFVHRVNNEGEGDP--FYETVGLITLEDVIEELI 177 (396)
Q Consensus 108 ~~l~~v~~~~~~~v~~V~~dt~L~~~L~~f~~~~~~h~avV~~~~~~~~~De--~g~~vGIVTleDIiEeli 177 (396)
.+++++| .++++++.+++++.++++.|.+. +.+.++|+ |+ .|+++|+||..||+..+.
T Consensus 13 ~~v~dim---~~~~~~v~~~~~~~~a~~~~~~~-~~~~~pVv--------d~~~~~~~~Givt~~dl~~~~~ 72 (164)
T 2pfi_A 13 VRVEHFM---NHSITTLAKDTPLEEVVKVVTST-DVTEYPLV--------ESTESQILVGIVQRAQLVQALQ 72 (164)
T ss_dssp CBHHHHC---BCCCCCEETTCBHHHHHHHHHTC-CCSEEEEE--------SCTTTCBEEEEEEHHHHHHHHH
T ss_pred CCHHHHc---CCCCeEECCCCcHHHHHHHHHhC-CCCceeEE--------ecCCCCEEEEEEEHHHHHHHHH
Confidence 4566665 47888999999999999999985 67777777 64 689999999999998876
No 164
>2yvy_A MGTE, Mg2+ transporter MGTE; membrane protein, transport protein; 2.30A {Thermus thermophilus} PDB: 2yvz_A
Probab=97.24 E-value=0.00025 Score=67.20 Aligned_cols=59 Identities=19% Similarity=0.291 Sum_probs=52.5
Q ss_pred ccccccccccccCCCEEEEeCCCChhHHHHHHHHHcCCcEEEEEeCCCCcEEEEEEhhhhccc
Q psy4847 40 LRRKIVGDVMTKLEDVYMLSYDAILDFETVSEIMKSGYSRIPVYEDRRTNIVTMFYIKDLALV 102 (396)
Q Consensus 40 l~~~tV~dIMtp~~dv~~l~~d~~l~~e~i~~i~~~g~sriPV~~~~~~~IVGiL~vkDLl~~ 102 (396)
..+.+|+++|++. +.+++.++++. ++++.|.++++..+||++++ |+++|+|+..|++..
T Consensus 196 ~~~~~v~~im~~~--~~~v~~~~~l~-~a~~~m~~~~~~~lpVvd~~-g~lvGivT~~Dil~~ 254 (278)
T 2yvy_A 196 DPRTRVAEIMNPK--VVYVRTDTDQE-EVARLMADYDFTVLPVVDEE-GRLVGIVTVDDVLDV 254 (278)
T ss_dssp CTTCBSTTTSBSS--CCCEETTSBHH-HHHHHHHHHTCSEEEEECTT-SBEEEEEEHHHHHHH
T ss_pred CCCCcHHHHhCCC--CeEEeCCCCHH-HHHHHHHhcCCCEEEEEeCC-CeEEEEEEHHHHHHH
Confidence 3578899999854 78999999999 99999999999999999765 899999999999854
No 165
>1yav_A Hypothetical protein BSU14130; cystathionine beta synthase (CBS) domain, structural genomics, protein structure initiative, PSI; 2.10A {Bacillus subtilis} SCOP: d.37.1.1
Probab=97.22 E-value=0.00034 Score=59.89 Aligned_cols=58 Identities=17% Similarity=0.181 Sum_probs=48.4
Q ss_pred cchhhhhhhhcC--CceEEcCCCCHHHHHHHHHhcCCceEEEEEEeCCCCCCCCCCceeeeecHHHHHHHHH
Q psy4847 108 TPLKTLCQFYQN--SCYFVFEDTTLDVLLKQFKEGIKGHMAFVHRVNNEGEGDPFYETVGLITLEDVIEELI 177 (396)
Q Consensus 108 ~~l~~v~~~~~~--~v~~V~~dt~L~~~L~~f~~~~~~h~avV~~~~~~~~~De~g~~vGIVTleDIiEeli 177 (396)
.+++++| .+ ++++|.+++++.++++.|.+. +...++|+ |+.|+++|+||..||+..+.
T Consensus 14 ~~v~~im---~~~~~~~~v~~~~~l~~a~~~m~~~-~~~~~pVv--------d~~~~lvGivt~~dl~~~~~ 73 (159)
T 1yav_A 14 ATVGQFM---IEADKVAHVQVGNNLEHALLVLTKT-GYTAIPVL--------DPSYRLHGLIGTNMIMNSIF 73 (159)
T ss_dssp CBHHHHS---EEGGGSCCEETTCBHHHHHHHHHHH-CCSEEEEE--------CTTCBEEEEEEHHHHHHHHB
T ss_pred hhHHHHh---CCccceEEECCCCcHHHHHHHHHhC-CCcEEEEE--------CCCCCEEEEeEHHHHHHHhh
Confidence 3566665 35 688999999999999999985 66677777 87889999999999999876
No 166
>3beh_A MLL3241 protein; transmembrane protein, membrane protein; HET: LDA; 3.10A {Mesorhizobium loti} PDB: 2zd9_A*
Probab=97.19 E-value=5.4e-05 Score=74.24 Aligned_cols=91 Identities=21% Similarity=0.296 Sum_probs=0.0
Q ss_pred HHHHHHHhcCCCCCCCccccccccCcccceEEEEEeeEEEEEEcCCcceeecCCccchhhhhcccccccCCCCCCCCCcc
Q psy4847 242 SLLDRITQKGTSQQKPTFKSLKKRNKPVDYFVLILEGRAEVVVGKENLVYEAGPFSYFGCQALTQNIGIAESPTNNSSAA 321 (396)
Q Consensus 242 ~vL~~Ll~~~~v~~~~~~~~LY~~g~~~d~f~LIL~Grv~V~~G~e~~~~E~gpfs~~G~~aL~~~~~~~~~~~~~~~~~ 321 (396)
..+..|..+......+++..||++|++++.+.+|++|+|++.... ....+|.++||+.++.... +
T Consensus 242 ~~l~~l~~~~~~~~~~~ge~I~~~G~~~~~ly~I~~G~v~v~~~~---~~~l~~G~~fGe~~~l~~~-----~------- 306 (355)
T 3beh_A 242 AVLVEIVRALRARTVPAGAVICRIGEPGDRMFFVVEGSVSVATPN---PVELGPGAFFGEMALISGE-----P------- 306 (355)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHhceEEEECCCCEEEeCCCcCceEEEEEeeEEEEEECC---eeEECCCCEEeehHHhCCC-----C-------
Confidence 334444444445555667789999999999999999999998765 3578999999999876510 0
Q ss_pred cccCCCcccccccccCCcccccCcEEEEcCCeEEEEEeHHHHHHHHH
Q psy4847 322 QAYGGSLQSVNLDSILRYTFVPDYSVRATTEMFYVKIRRSFYLAAKR 368 (396)
Q Consensus 322 ~~~~~s~~~~~~~~~~~~~~~PD~sv~~~~d~~~~~Itr~~Y~~al~ 368 (396)
..++++|.++|+.+.|+|+.+.+.+.
T Consensus 307 ---------------------~~~~~~A~~~~~l~~i~~~~f~~ll~ 332 (355)
T 3beh_A 307 ---------------------RSATVSAATTVSLLSLHSADFQMLCS 332 (355)
T ss_dssp -----------------------------------------------
T ss_pred ---------------------cceEEEECccEEEEEEeHHHHHHHHH
Confidence 12589999999999999999887554
No 167
>3usb_A Inosine-5'-monophosphate dehydrogenase; structural genomics, center for structural genomics of infec diseases, csgid, TIM barrel, CBS-domain; HET: MSE IMP; 2.38A {Bacillus anthracis} PDB: 3tsd_A* 3tsb_A*
Probab=97.13 E-value=0.00063 Score=70.61 Aligned_cols=104 Identities=15% Similarity=0.067 Sum_probs=70.1
Q ss_pred ccccccccccccCCCEEEEeCCCChhHHHHHHHHHcCCcEEEEEeCCCCcEEEEEEhhhhcccCCccccchhhhhhhhcC
Q psy4847 40 LRRKIVGDVMTKLEDVYMLSYDAILDFETVSEIMKSGYSRIPVYEDRRTNIVTMFYIKDLALVDPDDNTPLKTLCQFYQN 119 (396)
Q Consensus 40 l~~~tV~dIMtp~~dv~~l~~d~~l~~e~i~~i~~~g~sriPV~~~~~~~IVGiL~vkDLl~~~~~~~~~l~~v~~~~~~ 119 (396)
-.+.+|+++|++ .++++++.+.++. ++++.|.+++..++||++++ ++++|+|+.+|++...... ...++...- ..
T Consensus 172 ~~~~~V~~vM~~-~~~vtv~~~~~l~-eal~~m~~~~i~~lpVVDe~-g~l~GiIT~~Dil~~~~~p-~a~~D~~~r-l~ 246 (511)
T 3usb_A 172 DYSIKISDVMTK-EQLITAPVGTTLS-EAEKILQKYKIEKLPLVDNN-GVLQGLITIKDIEKVIEFP-NSAKDKQGR-LL 246 (511)
T ss_dssp CSSSBHHHHCCC-CCCCCEETTCCHH-HHHHHHHHHTCSEEEEECTT-SBEEEEEEHHHHHHHHHCT-TCCBCTTSC-BC
T ss_pred cCCCcHHHhccc-CCCEEECCCCCHH-HHHHHHHHcCCCEEEEEeCC-CCEeeeccHHHHHHhhhcc-cchhhhccc-ee
Confidence 346789999997 4588999999999 99999999999999999876 8999999999998532111 112222210 01
Q ss_pred CceEEcCCCCHHHHHHHHHhcCCceEEEEE
Q psy4847 120 SCYFVFEDTTLDVLLKQFKEGIKGHMAFVH 149 (396)
Q Consensus 120 ~v~~V~~dt~L~~~L~~f~~~~~~h~avV~ 149 (396)
....+-......+.+..+.+. ....++|-
T Consensus 247 V~aavg~~~d~~era~aLvea-Gvd~I~Id 275 (511)
T 3usb_A 247 VGAAVGVTADAMTRIDALVKA-SVDAIVLD 275 (511)
T ss_dssp CEEEECSSTTHHHHHHHHHHT-TCSEEEEE
T ss_pred eeeeeeeccchHHHHHHHHhh-ccceEEec
Confidence 112333333444555566664 56666664
No 168
>2oux_A Magnesium transporter; 10001B, structural genomics, PSI-2, P structure initiative, nysgxrc; 2.16A {Enterococcus faecalis} SCOP: a.118.26.1 d.37.1.1
Probab=97.13 E-value=0.00032 Score=67.06 Aligned_cols=59 Identities=12% Similarity=0.251 Sum_probs=52.3
Q ss_pred ccccccccccccCCCEEEEeCCCChhHHHHHHHHHcCCcEEEEEeCCCCcEEEEEEhhhhccc
Q psy4847 40 LRRKIVGDVMTKLEDVYMLSYDAILDFETVSEIMKSGYSRIPVYEDRRTNIVTMFYIKDLALV 102 (396)
Q Consensus 40 l~~~tV~dIMtp~~dv~~l~~d~~l~~e~i~~i~~~g~sriPV~~~~~~~IVGiL~vkDLl~~ 102 (396)
..+.+|+++|++. +.+++.++++. +++..|.++++.++||++++ |+++|+|+..|++..
T Consensus 198 ~~~~~v~~im~~~--~~~v~~~~~l~-ea~~~m~~~~~~~lpVVd~~-g~lvGiIT~~Dil~~ 256 (286)
T 2oux_A 198 DDDTLIADILNER--VISVHVGDDQE-DVAQTIRDYDFLAVPVTDYD-DHLLGIVTVDDIIDV 256 (286)
T ss_dssp CTTSBHHHHSBSC--CCCEETTSBHH-HHHHHHHHHTCSEEEEECTT-CBEEEEEEHHHHHHH
T ss_pred CCCCcHHHHcCCC--CeeecCCCCHH-HHHHHHHHcCCcEEEEEcCC-CeEEEEEEHHHHHHH
Confidence 3577899999864 78899999999 99999999999999999765 899999999999753
No 169
>3ocm_A Putative membrane protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: ADP; 1.80A {Bordetella parapertussis}
Probab=96.94 E-value=0.00097 Score=58.73 Aligned_cols=70 Identities=7% Similarity=-0.051 Sum_probs=53.3
Q ss_pred CCCCHHHHHHHHHHhcccccccccccccCCCEEEEeCCCChhHHHHHHHHHcCCcEEEEEeCCCCcEEEEEEhhhhcc
Q psy4847 24 NDLEKDEVNIISGALELRRKIVGDVMTKLEDVYMLSYDAILDFETVSEIMKSGYSRIPVYEDRRTNIVTMFYIKDLAL 101 (396)
Q Consensus 24 ~~l~~~E~~~i~~alel~~~tV~dIMtp~~dv~~l~~d~~l~~e~i~~i~~~g~sriPV~~~~~~~IVGiL~vkDLl~ 101 (396)
|-++..+.. .....-...+|+ +|.+ +.+++.++++. +++..|.+++..++||++++ |+++|+|+.+||+.
T Consensus 84 Givt~~Dl~--~~~~~~~~~~v~-~~~~---~~~v~~~~~l~-~al~~m~~~~~~~~~Vvde~-g~lvGiIT~~Dil~ 153 (173)
T 3ocm_A 84 GIGRAKDLV--ADLITEGRVRRN-RLRD---PIIVHESIGIL-RLMDTLKRSRGQLVLVADEF-GAIEGLVTPIDVFE 153 (173)
T ss_dssp EEEEHHHHH--HHHHHHSSCCGG-GSBC---CCEECGGGCHH-HHHHHHHHSTTCCEEEECTT-CCEEEEECHHHHHH
T ss_pred EEEEHHHHH--HHHhcCCcchhH-hcCC---CeEECCCCcHH-HHHHHHHHcCCeEEEEEeCC-CCEEEEEeHHHHHH
Confidence 455554433 222222466788 5543 67899999999 99999999999999999765 89999999999974
No 170
>3org_A CMCLC; transporter, transport protein; 3.50A {Cyanidioschyzon merolae}
Probab=96.89 E-value=0.0011 Score=70.56 Aligned_cols=56 Identities=14% Similarity=-0.036 Sum_probs=48.5
Q ss_pred ccccccccCCCEEEEeCCCChhHHHHHHHHHcCCcEEEEEeCCCCcEEEEEEhhhhcccCC
Q psy4847 44 IVGDVMTKLEDVYMLSYDAILDFETVSEIMKSGYSRIPVYEDRRTNIVTMFYIKDLALVDP 104 (396)
Q Consensus 44 tV~dIMtp~~dv~~l~~d~~l~~e~i~~i~~~g~sriPV~~~~~~~IVGiL~vkDLl~~~~ 104 (396)
+|+++|++. ++++++++++. ++.+.|.+++..++||++ + |+++|+|+.+||+..-.
T Consensus 569 ~v~~iMt~~--pitV~~~~~l~-ea~~~M~~~~i~~lpVve-~-G~lvGIVT~~Dll~~~~ 624 (632)
T 3org_A 569 SLVVPCDVS--PIVVTSYSLVR-QLHFLFVMLMPSMIYVTE-R-GKLVGIVEREDVAYGYS 624 (632)
T ss_dssp --CCSCCCC--CCEEETTCBHH-HHHHHHHHTCCSEEEEEE-T-TEEEEEEEGGGTEECCC
T ss_pred ccchhhcCC--CceecCCCcHH-HHHHHHHhcCCCEEEEEE-C-CEEEEEEehhhHHHHHh
Confidence 489999965 78999999999 999999999999999994 3 79999999999987543
No 171
>2zy9_A Mg2+ transporter MGTE; membrane protien, metal transport; 2.94A {Thermus thermophilus} PDB: 2yvx_A
Probab=96.78 E-value=0.0011 Score=68.03 Aligned_cols=59 Identities=19% Similarity=0.306 Sum_probs=52.5
Q ss_pred ccccccccccccCCCEEEEeCCCChhHHHHHHHHHcCCcEEEEEeCCCCcEEEEEEhhhhccc
Q psy4847 40 LRRKIVGDVMTKLEDVYMLSYDAILDFETVSEIMKSGYSRIPVYEDRRTNIVTMFYIKDLALV 102 (396)
Q Consensus 40 l~~~tV~dIMtp~~dv~~l~~d~~l~~e~i~~i~~~g~sriPV~~~~~~~IVGiL~vkDLl~~ 102 (396)
-.+.+|+++|++ ++++++.++++. ++.+.|.+++...+||++++ |+++|+|+.+|++..
T Consensus 216 ~~~~~v~dim~~--~~~~v~~~~~l~-ea~~~m~~~~~~~lpVVDe~-g~lvGiIT~~Dil~~ 274 (473)
T 2zy9_A 216 DPRTRVAEIMNP--KVVYVRTDTDQE-EVARLMADYDFTVLPVVDEE-GRLVGIVTVDDVLDV 274 (473)
T ss_dssp CTTSBGGGTSBS--SCCCEESSSBHH-HHHHHHHHHTCSEEEEECTT-SBEEEEEEHHHHHHH
T ss_pred CCCCcHHHHhCC--CCeEEeCCCcHH-HHHHHHHhcCCcEEEEEcCC-CEEEEEEehHhhHHH
Confidence 357899999985 378999999999 99999999999999999865 899999999999753
No 172
>2d4z_A Chloride channel protein; CLC chloride channel cytoplasmic domain, CBS domains, ION CH regulatory subunit, transport protein; 3.10A {Torpedo marmorata} SCOP: d.37.1.1
Probab=96.76 E-value=0.0018 Score=60.96 Aligned_cols=58 Identities=16% Similarity=0.081 Sum_probs=47.4
Q ss_pred cchhhhhhhhcCCceEEcCCCCHHHHHHHHHhcCCceEEEEEEeCCCCCCCC--CCceeeeecHHHHHHHHH
Q psy4847 108 TPLKTLCQFYQNSCYFVFEDTTLDVLLKQFKEGIKGHMAFVHRVNNEGEGDP--FYETVGLITLEDVIEELI 177 (396)
Q Consensus 108 ~~l~~v~~~~~~~v~~V~~dt~L~~~L~~f~~~~~~h~avV~~~~~~~~~De--~g~~vGIVTleDIiEeli 177 (396)
..++++| .+++.+|.+++++.++++.|.+. +.+-.+|+ |+ .|.++||||..||+..+.
T Consensus 13 ~~v~diM---t~~vvtv~~~~tv~~~~~lm~~~-~~~~~PVV--------d~~~~~~LvGiIt~~dl~~~l~ 72 (250)
T 2d4z_A 13 IQVGDIM---VRDVTSIASTSTYGDLLHVLRQT-KLKFFPFV--------DTPDTNTLLGSIDRTEVEGLLQ 72 (250)
T ss_dssp CBTTSSS---BSSCCCEETTCBHHHHHHHHHHC-CCSEEEEE--------SCTTTCBEEEEEEHHHHHHHHH
T ss_pred CChHHhc---CCCCeEECCCCCHHHHHHHHHhc-CCCEEEEE--------ecCCCCeEEEEEEHHHHHHHHH
Confidence 3556665 58999999999999999999985 56666666 43 468999999999999876
No 173
>4avf_A Inosine-5'-monophosphate dehydrogenase; oxidoreductase; 2.23A {Pseudomonas aeruginosa}
Probab=96.55 E-value=0.00037 Score=71.95 Aligned_cols=60 Identities=12% Similarity=0.208 Sum_probs=0.0
Q ss_pred cccccccccccCCCEEEEeCCCChhHHHHHHHHHcCCcEEEEEeCCCCcEEEEEEhhhhccc
Q psy4847 41 RRKIVGDVMTKLEDVYMLSYDAILDFETVSEIMKSGYSRIPVYEDRRTNIVTMFYIKDLALV 102 (396)
Q Consensus 41 ~~~tV~dIMtp~~dv~~l~~d~~l~~e~i~~i~~~g~sriPV~~~~~~~IVGiL~vkDLl~~ 102 (396)
.+.+|+++|+|..++++++.+.++. ++++.|.+++...+||++++ ++++|+|+.+|++..
T Consensus 145 ~~~~V~~vMtp~~~~vtv~~~~~l~-ea~~~m~~~~i~~lpVVDe~-g~lvGiIT~~Dil~~ 204 (490)
T 4avf_A 145 AGDTVAAIMTPKDKLVTAREGTPLE-EMKAKLYENRIEKMLVVDEN-FYLRGLVTFRDIEKA 204 (490)
T ss_dssp --------------------------------------------------------------
T ss_pred cCCcHHHHhccCCCCEEECCCCcHH-HHHHHHHHcCCCEEEEEcCC-CcEEEEEehHHhhhh
Confidence 3567999999755688999999999 99999999999999999865 899999999999864
No 174
>4fxs_A Inosine-5'-monophosphate dehydrogenase; structural genomics, IMPDH, IMP, mycophenolic acid, MOA; HET: IMP MOA; 2.24A {Vibrio cholerae o1 biovar el tor}
Probab=96.37 E-value=0.00049 Score=71.21 Aligned_cols=60 Identities=25% Similarity=0.206 Sum_probs=43.0
Q ss_pred cccccccccccCCCEEEEeCCCChhHHHHHHHHHcCCcEEEEEeCCCCcEEEEEEhhhhccc
Q psy4847 41 RRKIVGDVMTKLEDVYMLSYDAILDFETVSEIMKSGYSRIPVYEDRRTNIVTMFYIKDLALV 102 (396)
Q Consensus 41 ~~~tV~dIMtp~~dv~~l~~d~~l~~e~i~~i~~~g~sriPV~~~~~~~IVGiL~vkDLl~~ 102 (396)
.+.+|+++|+|..++++++.+.++. ++++.|.+++...+||+|++ ++++|+|+.+|++..
T Consensus 147 ~~~~v~diM~p~~~~vtv~~~~~l~-ea~~~m~~~~i~~lpVVDe~-G~l~GiIT~~DIl~~ 206 (496)
T 4fxs_A 147 LTKSVAAVMTPKERLATVKEGATGA-EVQEKMHKARVEKILVVNDE-FQLKGMITAKDFHKA 206 (496)
T ss_dssp TTSBGGGTSEEGGGCCEEECC-----CGGGTCC---CCCEEEECTT-SBCCEEECCC-----
T ss_pred CCCcHHHHhcCCCCCEEECCCCCHH-HHHHHHHHcCCCEEEEEcCC-CCEEEeehHhHHHHh
Confidence 4678999999765578999999999 99999999999999999876 899999999999864
No 175
>3pc3_A CG1753, isoform A; CBS, synthase, PLP, heme, aminoacrylate, lyase; HET: HEM P1T; 1.55A {Drosophila melanogaster} PDB: 3pc2_A* 3pc4_A*
Probab=96.33 E-value=0.0033 Score=65.13 Aligned_cols=57 Identities=12% Similarity=0.174 Sum_probs=47.8
Q ss_pred hhhhhcCCceEEcCC-CCHHHHHHHHHhcCCceEEEEEEeCCCCCCC-CCCceeeeecHHHHHHHHHh
Q psy4847 113 LCQFYQNSCYFVFED-TTLDVLLKQFKEGIKGHMAFVHRVNNEGEGD-PFYETVGLITLEDVIEELIQ 178 (396)
Q Consensus 113 v~~~~~~~v~~V~~d-t~L~~~L~~f~~~~~~h~avV~~~~~~~~~D-e~g~~vGIVTleDIiEeli~ 178 (396)
+.++|.+++++|.++ +++.++++.|.+. +...++|+ | +.|+++||||..||+..+..
T Consensus 386 V~diM~~~~vtv~~~~~tv~ea~~~m~~~-~~~~lpVv--------d~~~g~lvGiVt~~Dll~~l~~ 444 (527)
T 3pc3_A 386 IAELELPAPPVILKSDATVGEAIALMKKH-RVDQLPVV--------DQDDGSVLGVVGQETLITQIVS 444 (527)
T ss_dssp GGGGCCCCCSCCEETTCBHHHHHHHHHHH-TCSEEEEE--------CTTTCCEEEEEEHHHHHHHHHH
T ss_pred HHHhCcCCCeEEcCCCCcHHHHHHHHHHc-CCCeEEEE--------ECCCCEEEEEEEHHHHHHHHHh
Confidence 444445888999999 9999999999985 56666777 7 67899999999999999874
No 176
>1vrd_A Inosine-5'-monophosphate dehydrogenase; TM1347, structural G joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.18A {Thermotoga maritima} SCOP: c.1.5.1
Probab=96.19 E-value=0.00076 Score=69.39 Aligned_cols=59 Identities=22% Similarity=0.350 Sum_probs=2.6
Q ss_pred ccccccccccCCCEEEEeCCCChhHHHHHHHHHcCCcEEEEEeCCCCcEEEEEEhhhhccc
Q psy4847 42 RKIVGDVMTKLEDVYMLSYDAILDFETVSEIMKSGYSRIPVYEDRRTNIVTMFYIKDLALV 102 (396)
Q Consensus 42 ~~tV~dIMtp~~dv~~l~~d~~l~~e~i~~i~~~g~sriPV~~~~~~~IVGiL~vkDLl~~ 102 (396)
+.+|+++|++..++.+++.++++. ++++.|.+++..++||++++ ++++|+|+.+||+..
T Consensus 154 ~~~v~~im~~~~~~~~v~~~~~l~-ea~~~m~~~~~~~lpVVd~~-g~lvGiIt~~Dll~~ 212 (494)
T 1vrd_A 154 SKKIKDLMTPREKLIVAPPDISLE-KAKEILHQHRIEKLPLVSKD-NKLVGLITIKDIMSV 212 (494)
T ss_dssp ---------------------------------------------------------CHHH
T ss_pred CCcHHHHhCCCCCCeEECCCCCHH-HHHHHHHHcCCcEEEEEcCC-CeEEEEEEHHHHHhh
Confidence 467999999855689999999999 99999999999999999865 899999999999753
No 177
>4af0_A Inosine-5'-monophosphate dehydrogenase; oxidoreductase, GTP biosynthesis, drug resistance; HET: MOA IMP; 2.20A {Cryptococcus neoformans} PDB: 4af0_B*
Probab=96.02 E-value=0.0011 Score=68.79 Aligned_cols=58 Identities=19% Similarity=0.217 Sum_probs=0.0
Q ss_pred cccccccccccCCCEEEEeCCCChhHHHHHHHHHcCCcEEEEEeCCCCcEEEEEEhhhhccc
Q psy4847 41 RRKIVGDVMTKLEDVYMLSYDAILDFETVSEIMKSGYSRIPVYEDRRTNIVTMFYIKDLALV 102 (396)
Q Consensus 41 ~~~tV~dIMtp~~dv~~l~~d~~l~~e~i~~i~~~g~sriPV~~~~~~~IVGiL~vkDLl~~ 102 (396)
.+..|++|||+. +++++.+.++. ++.+.|.+++...+||++++ ++++|+|+.||+...
T Consensus 198 ~~~~V~evMT~~--lvt~~~~~~le-eA~~iL~~~kieklpVVd~~-g~LvGlIT~kDi~k~ 255 (556)
T 4af0_A 198 AETPIKSVMTTE--VVTGSSPITLE-KANSLLRETKKGKLPIVDSN-GHLVSLVARSDLLKN 255 (556)
T ss_dssp --------------------------------------------------------------
T ss_pred cceEhhhhcccc--eEEecCCCCHH-HHHHHHHHccccceeEEccC-CcEEEEEEechhhhh
Confidence 467899999974 99999999999 99999999999999999876 899999999999753
No 178
>1zfj_A Inosine monophosphate dehydrogenase; IMPDH, CBS domains, oxidoreductase; HET: IMP; 1.90A {Streptococcus pyogenes} SCOP: c.1.5.1 d.37.1.1
Probab=95.95 E-value=0.0071 Score=61.95 Aligned_cols=58 Identities=12% Similarity=0.210 Sum_probs=51.3
Q ss_pred cccccccccccCCCEEEEeCCCChhHHHHHHHHHcCCcEEEEEeCCCCcEEEEEEhhhhcc
Q psy4847 41 RRKIVGDVMTKLEDVYMLSYDAILDFETVSEIMKSGYSRIPVYEDRRTNIVTMFYIKDLAL 101 (396)
Q Consensus 41 ~~~tV~dIMtp~~dv~~l~~d~~l~~e~i~~i~~~g~sriPV~~~~~~~IVGiL~vkDLl~ 101 (396)
.+.+|+++|++. ++++++.++++. ++++.|.+++..++||++++ ++++|+++.+||+.
T Consensus 150 ~~~~v~~im~~~-~~~~v~~~~~l~-~a~~~m~~~~~~~lpVVd~~-g~lvGivt~~Dil~ 207 (491)
T 1zfj_A 150 YNAPISEHMTSE-HLVTAAVGTDLE-TAERILHEHRIEKLPLVDNS-GRLSGLITIKDIEK 207 (491)
T ss_dssp SSSBTTTSCCCS-CCCCEETTCCHH-HHHHHHHHTTCSEEEEECTT-SBEEEEEEHHHHHH
T ss_pred CCCcHHHHcCCC-CCEEECCCCCHH-HHHHHHHHcCCCEEEEEcCC-CcEEEEEEHHHHHH
Confidence 457899999861 477899999999 99999999999999999865 89999999999975
No 179
>2cu0_A Inosine-5'-monophosphate dehydrogenase; structural genomics, pyrococcus horikoshii OT3, riken structural genomics/PROT initiative, RSGI; HET: XMP; 2.10A {Pyrococcus horikoshii} SCOP: c.1.5.1
Probab=95.67 E-value=0.0034 Score=64.53 Aligned_cols=58 Identities=24% Similarity=0.460 Sum_probs=0.0
Q ss_pred ccccccccccCCCEEEEeCCCChhHHHHHHHHHcCCcEEEEEeCCCCcEEEEEEhhhhcccC
Q psy4847 42 RKIVGDVMTKLEDVYMLSYDAILDFETVSEIMKSGYSRIPVYEDRRTNIVTMFYIKDLALVD 103 (396)
Q Consensus 42 ~~tV~dIMtp~~dv~~l~~d~~l~~e~i~~i~~~g~sriPV~~~~~~~IVGiL~vkDLl~~~ 103 (396)
+.+|+++|++ ++++++.++++. ++++.|.+++...+||++++ ++++|+|+.+||+...
T Consensus 149 ~~~v~~im~~--~~~~v~~~~~l~-eal~~m~~~~~~~lpVVde~-g~lvGiiT~~Dil~~~ 206 (486)
T 2cu0_A 149 GKLVKELMTK--EVITVPESIEVE-EALKIMIENRIDRLPVVDER-GKLVGLITMSDLVARK 206 (486)
T ss_dssp --------------------------------------------------------------
T ss_pred CCCHHHHccC--CCeEECCcCcHH-HHHHHHHHcCCCEEEEEecC-CeEEEEEEHHHHHHhh
Confidence 4579999986 378999999999 99999999999999999865 7899999999998654
No 180
>1jcn_A Inosine monophosphate dehydrogenase I; IMPD, IMPDH, guanine nucleotide synthesis, oxidoreductase; HET: CPR; 2.50A {Homo sapiens} SCOP: c.1.5.1 d.37.1.1 PDB: 1jr1_A* 1nf7_A* 1b3o_A* 1nfb_A*
Probab=95.67 E-value=0.0015 Score=67.58 Aligned_cols=60 Identities=18% Similarity=0.288 Sum_probs=41.0
Q ss_pred cccccccccccCCCEEEEeCCCChhHHHHHHHHHcCCcEEEEEeCCCCcEEEEEEhhhhccc
Q psy4847 41 RRKIVGDVMTKLEDVYMLSYDAILDFETVSEIMKSGYSRIPVYEDRRTNIVTMFYIKDLALV 102 (396)
Q Consensus 41 ~~~tV~dIMtp~~dv~~l~~d~~l~~e~i~~i~~~g~sriPV~~~~~~~IVGiL~vkDLl~~ 102 (396)
.+.+|+++|++..++.+++.++++. ++++.|.+++..++||++++ ++++|+|+.+||+..
T Consensus 171 ~~~~v~~vm~~~~~~~tv~~~~~l~-ea~~~m~~~~~~~lpVVd~~-g~lvGiIt~~Dll~~ 230 (514)
T 1jcn_A 171 HTTLLSEVMTPRIELVVAPAGVTLK-EANEILQRSKKGKLPIVNDC-DELVAIIARTDLKKN 230 (514)
T ss_dssp ----------CCBCCCCEETTCCST-TTTTHHHHHTCSCCCEESSS-SCCC----CCCCSSC
T ss_pred CCCCHHHHhCCCCCCeEECCCCCHH-HHHHHHHHcCCCcccEECCC-CeEEEEEEHHHHHHH
Confidence 4568999999744688999999999 99999999999999999865 899999999999854
No 181
>3rns_A Cupin 2 conserved barrel domain protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, unknown function; HET: MSE; 2.07A {Leptotrichia buccalis}
Probab=72.74 E-value=5.8 Score=35.84 Aligned_cols=34 Identities=9% Similarity=0.244 Sum_probs=26.6
Q ss_pred cccccCcccceEEEEEeeEEEEEEcCCcceeecC
Q psy4847 261 SLKKRNKPVDYFVLILEGRAEVVVGKENLVYEAG 294 (396)
Q Consensus 261 ~LY~~g~~~d~f~LIL~Grv~V~~G~e~~~~E~g 294 (396)
.+-.--.|.+-++.||+|++++.+|.+.....+|
T Consensus 49 ~~~~h~h~~~~~~~Vl~G~~~~~i~~~~~~l~~G 82 (227)
T 3rns_A 49 EITAEAMLGNRYYYCFNGNGEIFIENNKKTISNG 82 (227)
T ss_dssp EEEECSCSSCEEEEEEESEEEEEESSCEEEEETT
T ss_pred ccCccccCCCEEEEEEeCEEEEEECCEEEEECCC
Confidence 3444446889999999999999999887666655
No 182
>2opk_A Hypothetical protein; putative mannose-6-phosphate isomerase, structural genomics, center for structural genomics, JCSG; 2.10A {Ralstonia eutropha}
Probab=66.36 E-value=3.9 Score=32.72 Aligned_cols=34 Identities=21% Similarity=0.384 Sum_probs=27.5
Q ss_pred cccceEEEEEeeEEEEEEcCCc--ceeecCCccchh
Q psy4847 267 KPVDYFVLILEGRAEVVVGKEN--LVYEAGPFSYFG 300 (396)
Q Consensus 267 ~~~d~f~LIL~Grv~V~~G~e~--~~~E~gpfs~~G 300 (396)
++.+-|++||+|++++.+|.+. ..+..|-+-+|.
T Consensus 51 ~~~~E~~~Vl~G~~~l~~~~~~~~~~l~~Gd~i~ip 86 (112)
T 2opk_A 51 SPQDEWVMVVSGSAGIECEGDTAPRVMRPGDWLHVP 86 (112)
T ss_dssp CSSEEEEEEEESCEEEEETTCSSCEEECTTEEEEEC
T ss_pred CCccEEEEEEeCeEEEEECCEEEEEEECCCCEEEEC
Confidence 5778999999999999999887 666666555554
No 183
>2ozj_A Cupin 2, conserved barrel; cupin superfamily protein, struct genomics, joint center for structural genomics, JCSG; HET: MSE; 1.60A {Desulfitobacterium hafniense}
Probab=59.88 E-value=7.4 Score=30.52 Aligned_cols=33 Identities=18% Similarity=0.171 Sum_probs=25.6
Q ss_pred cccceEEEEEeeEEEEEEcCCcceeecCCccch
Q psy4847 267 KPVDYFVLILEGRAEVVVGKENLVYEAGPFSYF 299 (396)
Q Consensus 267 ~~~d~f~LIL~Grv~V~~G~e~~~~E~gpfs~~ 299 (396)
.+.+-|++||+|++++.+|.+......|-+-++
T Consensus 56 h~~~e~~~vl~G~~~~~i~~~~~~l~~Gd~i~i 88 (114)
T 2ozj_A 56 YFGDTLYLILQGEAVITFDDQKIDLVPEDVLMV 88 (114)
T ss_dssp CSSCEEEEEEEEEEEEEETTEEEEECTTCEEEE
T ss_pred CCCCeEEEEEeCEEEEEECCEEEEecCCCEEEE
Confidence 466889999999999999888766666644333
No 184
>1o5u_A Novel thermotoga maritima enzyme TM1112; cupin, structural genomics center for structural genomics, JCSG, protein structure INI PSI; 1.83A {Thermotoga maritima} SCOP: b.82.1.8 PDB: 1lkn_A 2k9z_A
Probab=57.64 E-value=10 Score=29.88 Aligned_cols=34 Identities=29% Similarity=0.383 Sum_probs=26.4
Q ss_pred cccceEEEEEeeEEEEEEc-CCcceeecCCccchh
Q psy4847 267 KPVDYFVLILEGRAEVVVG-KENLVYEAGPFSYFG 300 (396)
Q Consensus 267 ~~~d~f~LIL~Grv~V~~G-~e~~~~E~gpfs~~G 300 (396)
.+.+-|++||+|++++.+| .+...+.+|=.-+|.
T Consensus 47 H~~~E~~~Vl~G~~~~~i~~g~~~~l~~GD~i~ip 81 (101)
T 1o5u_A 47 YDTNETCYILEGKVEVTTEDGKKYVIEKGDLVTFP 81 (101)
T ss_dssp CSSCEEEEEEEEEEEEEETTCCEEEEETTCEEEEC
T ss_pred CCceEEEEEEeCEEEEEECCCCEEEECCCCEEEEC
Confidence 5678999999999999998 776666666544443
No 185
>2vpv_A Protein MIF2, MIF2P; nucleus, mitosis, centromere, cell cycle, DNA-binding, kinetochore, cell division, phosphoprotein, jelly-roll fold; 2.7A {Saccharomyces cerevisiae}
Probab=55.09 E-value=8.3 Score=33.71 Aligned_cols=33 Identities=18% Similarity=0.147 Sum_probs=26.3
Q ss_pred cccceEEEEEeeEEEEEEcCCcceeecCCccch
Q psy4847 267 KPVDYFVLILEGRAEVVVGKENLVYEAGPFSYF 299 (396)
Q Consensus 267 ~~~d~f~LIL~Grv~V~~G~e~~~~E~gpfs~~ 299 (396)
+....|..||+|+++|++|.+.+....|-+=||
T Consensus 108 h~gEE~~yVLeG~v~vtl~g~~~~L~~Gds~~i 140 (166)
T 2vpv_A 108 FRTYITFHVIQGIVEVTVCKNKFLSVKGSTFQI 140 (166)
T ss_dssp CSEEEEEEEEESEEEEEETTEEEEEETTCEEEE
T ss_pred CCceEEEEEEEeEEEEEECCEEEEEcCCCEEEE
Confidence 456789999999999999988777666655444
No 186
>3lwc_A Uncharacterized protein; structural genomics, unknown function, joint center for STRU genomics, JCSG, protein structure initiative; HET: MSE; 1.40A {Rhizobium leguminosarum}
Probab=53.43 E-value=10 Score=30.83 Aligned_cols=27 Identities=33% Similarity=0.523 Sum_probs=21.9
Q ss_pred ccceEEEEEeeEEEEEEcCCcceeecC
Q psy4847 268 PVDYFVLILEGRAEVVVGKENLVYEAG 294 (396)
Q Consensus 268 ~~d~f~LIL~Grv~V~~G~e~~~~E~g 294 (396)
+.+-++.||+|++++.+|.+......|
T Consensus 58 ~~~E~~~Vl~G~~~~~~~g~~~~l~~G 84 (119)
T 3lwc_A 58 AVDDVMIVLEGRLSVSTDGETVTAGPG 84 (119)
T ss_dssp SSEEEEEEEEEEEEEEETTEEEEECTT
T ss_pred CCCEEEEEEeCEEEEEECCEEEEECCC
Confidence 889999999999999997665544444
No 187
>2pyt_A Ethanolamine utilization protein EUTQ; structural genomics, joint center for structural genomics, J protein structure initiative; 1.90A {Salmonella typhimurium LT2} SCOP: b.82.1.24
Probab=52.60 E-value=11 Score=31.18 Aligned_cols=27 Identities=30% Similarity=0.412 Sum_probs=21.8
Q ss_pred ccceEEEEEeeEEEEEEcCCcceeecC
Q psy4847 268 PVDYFVLILEGRAEVVVGKENLVYEAG 294 (396)
Q Consensus 268 ~~d~f~LIL~Grv~V~~G~e~~~~E~g 294 (396)
+.+-|+.||+|++++.++.+...+.+|
T Consensus 74 ~~~E~~~VLeG~~~l~~~g~~~~l~~G 100 (133)
T 2pyt_A 74 NYDEIDMVLEGELHVRHEGETMIAKAG 100 (133)
T ss_dssp SSEEEEEEEEEEEEEEETTEEEEEETT
T ss_pred CCCEEEEEEECEEEEEECCEEEEECCC
Confidence 478999999999999998666555554
No 188
>3bcw_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; 1.60A {Bordetella bronchiseptica RB50}
Probab=50.26 E-value=12 Score=30.74 Aligned_cols=26 Identities=27% Similarity=0.290 Sum_probs=21.3
Q ss_pred ceEEEEEeeEEEEEE-cCCcceeecCC
Q psy4847 270 DYFVLILEGRAEVVV-GKENLVYEAGP 295 (396)
Q Consensus 270 d~f~LIL~Grv~V~~-G~e~~~~E~gp 295 (396)
+-|+.||+|++++.+ |.+...+.+|=
T Consensus 69 ~E~~~Vl~G~~~l~~~~g~~~~l~~GD 95 (123)
T 3bcw_A 69 IEYCHIIEGEARLVDPDGTVHAVKAGD 95 (123)
T ss_dssp EEEEEEEEEEEEEECTTCCEEEEETTC
T ss_pred cEEEEEEEEEEEEEECCCeEEEECCCC
Confidence 899999999999999 76666655553
No 189
>3fjs_A Uncharacterized protein with RMLC-like cupin fold; structural genomics, joint center for structural genomics, JCSG; HET: MSE; 1.90A {Ralstonia eutropha JMP134}
Probab=47.59 E-value=11 Score=29.95 Aligned_cols=30 Identities=20% Similarity=0.180 Sum_probs=23.1
Q ss_pred cccceEEEEEeeEEEEEEcCCcceeecCCc
Q psy4847 267 KPVDYFVLILEGRAEVVVGKENLVYEAGPF 296 (396)
Q Consensus 267 ~~~d~f~LIL~Grv~V~~G~e~~~~E~gpf 296 (396)
.+.+-|+.||+|++++.+|.+......|-+
T Consensus 54 H~~~e~~~Vl~G~~~~~i~~~~~~l~~Gd~ 83 (114)
T 3fjs_A 54 VAGPSTIQCLEGEVEIGVDGAQRRLHQGDL 83 (114)
T ss_dssp CSSCEEEEEEESCEEEEETTEEEEECTTEE
T ss_pred CCCcEEEEEEECEEEEEECCEEEEECCCCE
Confidence 345789999999999999888655555533
No 190
>1yhf_A Hypothetical protein SPY1581; structural genomics, conserved hypothetical protein, PSI, PR structure initiative; 2.00A {Streptococcus pyogenes} SCOP: b.82.1.9
Probab=47.01 E-value=15 Score=28.49 Aligned_cols=33 Identities=30% Similarity=0.414 Sum_probs=25.2
Q ss_pred cccceEEEEEeeEEEEEEcCCcceeecCCccch
Q psy4847 267 KPVDYFVLILEGRAEVVVGKENLVYEAGPFSYF 299 (396)
Q Consensus 267 ~~~d~f~LIL~Grv~V~~G~e~~~~E~gpfs~~ 299 (396)
++..-+++||+|++++.+|.+...+..|-+-++
T Consensus 58 H~~~e~~~vl~G~~~~~~~~~~~~l~~Gd~~~i 90 (115)
T 1yhf_A 58 SPGDAMVTILSGLAEITIDQETYRVAEGQTIVM 90 (115)
T ss_dssp CSSEEEEEEEESEEEEEETTEEEEEETTCEEEE
T ss_pred CCCcEEEEEEeCEEEEEECCEEEEECCCCEEEE
Confidence 346789999999999999887766666654443
No 191
>2b8m_A Hypothetical protein MJ0764; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; 1.70A {Methanocaldococcus jannaschii} SCOP: b.82.1.18
Probab=45.92 E-value=20 Score=28.07 Aligned_cols=36 Identities=14% Similarity=0.328 Sum_probs=27.8
Q ss_pred ccceEEEEEeeEEEEEEcCCcc-eeecCCccchhhhh
Q psy4847 268 PVDYFVLILEGRAEVVVGKENL-VYEAGPFSYFGCQA 303 (396)
Q Consensus 268 ~~d~f~LIL~Grv~V~~G~e~~-~~E~gpfs~~G~~a 303 (396)
+..-+++||+|++++.+|.+.. ....|-+-++....
T Consensus 46 ~~~e~~~Vl~G~~~~~i~~~~~~~l~~Gd~i~ip~~~ 82 (117)
T 2b8m_A 46 NSYVHLIIIKGEMTLTLEDQEPHNYKEGNIVYVPFNV 82 (117)
T ss_dssp SSCEEEEEEESEEEEEETTSCCEEEETTCEEEECTTC
T ss_pred CCcEEEEEEeCEEEEEECCEEEEEeCCCCEEEECCCC
Confidence 5678999999999999998887 77777655554443
No 192
>2pfw_A Cupin 2, conserved barrel domain protein; cupin domain, struc genomics, joint center for structural genomics, JCSG; 1.90A {Shewanella frigidimarina}
Probab=44.93 E-value=15 Score=28.53 Aligned_cols=29 Identities=24% Similarity=0.165 Sum_probs=22.9
Q ss_pred ccceEEEEEeeEEEEEEcCCcceeecCCc
Q psy4847 268 PVDYFVLILEGRAEVVVGKENLVYEAGPF 296 (396)
Q Consensus 268 ~~d~f~LIL~Grv~V~~G~e~~~~E~gpf 296 (396)
+..-+++||+|++++.+|.+......|-.
T Consensus 53 ~~~e~~~vl~G~~~~~~~~~~~~l~~Gd~ 81 (116)
T 2pfw_A 53 RHSQVSYVVEGEFHVNVDGVIKVLTAGDS 81 (116)
T ss_dssp SSEEEEEEEEECEEEEETTEEEEECTTCE
T ss_pred CcceEEEEEeeEEEEEECCEEEEeCCCCE
Confidence 46789999999999999887666555544
No 193
>1v70_A Probable antibiotics synthesis protein; structural genomics, thermus thermophilus HB8, riken structu genomics/proteomics initiative, RSGI; 1.30A {Thermus thermophilus} SCOP: b.82.1.9 PDB: 2dct_A
Probab=44.27 E-value=13 Score=27.77 Aligned_cols=31 Identities=29% Similarity=0.393 Sum_probs=23.3
Q ss_pred cceEEEEEeeEEEEEEcCCcceeecCCccch
Q psy4847 269 VDYFVLILEGRAEVVVGKENLVYEAGPFSYF 299 (396)
Q Consensus 269 ~d~f~LIL~Grv~V~~G~e~~~~E~gpfs~~ 299 (396)
.+-+++||+|++++.+|.+...+..|-+-++
T Consensus 49 ~~e~~~v~~G~~~~~~~~~~~~l~~Gd~~~i 79 (105)
T 1v70_A 49 SDKVYYALEGEVVVRVGEEEALLAPGMAAFA 79 (105)
T ss_dssp CEEEEEEEESCEEEEETTEEEEECTTCEEEE
T ss_pred CcEEEEEEeCEEEEEECCEEEEeCCCCEEEE
Confidence 3568999999999999877666666554443
No 194
>4e2g_A Cupin 2 conserved barrel domain protein; MCSG, PSI-biology, structural genomics, GEBA, midwest center structural genomics; HET: MSE; 1.86A {Sphaerobacter thermophilus}
Probab=43.57 E-value=14 Score=29.28 Aligned_cols=30 Identities=30% Similarity=0.477 Sum_probs=23.0
Q ss_pred cccceEEEEEeeEEEEEEcCCcceeecCCc
Q psy4847 267 KPVDYFVLILEGRAEVVVGKENLVYEAGPF 296 (396)
Q Consensus 267 ~~~d~f~LIL~Grv~V~~G~e~~~~E~gpf 296 (396)
++..-+++||+|++++.+|.+......|-+
T Consensus 59 H~~~e~~~vl~G~~~~~~~~~~~~l~~Gd~ 88 (126)
T 4e2g_A 59 HPHEQAGVMLEGTLELTIGEETRVLRPGMA 88 (126)
T ss_dssp CSSEEEEEEEEECEEEEETTEEEEECTTEE
T ss_pred CCCceEEEEEEeEEEEEECCEEEEeCCCCE
Confidence 345789999999999999877655555543
No 195
>2gu9_A Tetracenomycin polyketide synthesis protein; X-RAY diffraction, cupin, immune system; 1.40A {Xanthomonas campestris} PDB: 2ilb_A 3h50_A
Probab=43.44 E-value=14 Score=28.26 Aligned_cols=31 Identities=19% Similarity=0.467 Sum_probs=23.9
Q ss_pred cceEEEEEeeEEEEEEcCCcceeecCCccch
Q psy4847 269 VDYFVLILEGRAEVVVGKENLVYEAGPFSYF 299 (396)
Q Consensus 269 ~d~f~LIL~Grv~V~~G~e~~~~E~gpfs~~ 299 (396)
..-+++||+|++++.+|.+...+..|-+-++
T Consensus 44 ~~e~~~vl~G~~~~~~~~~~~~l~~Gd~~~i 74 (113)
T 2gu9_A 44 ADQWLFVVDGAGEAIVDGHTQALQAGSLIAI 74 (113)
T ss_dssp CEEEEEEEECCEEEEETTEEEEECTTEEEEE
T ss_pred CcEEEEEEeCEEEEEECCEEEEeCCCCEEEE
Confidence 6789999999999999877666555544443
No 196
>3d82_A Cupin 2, conserved barrel domain protein; structural genomics, joint center for structural genomics; 2.05A {Shewanella frigidimarina ncimb 400}
Probab=42.06 E-value=22 Score=26.65 Aligned_cols=25 Identities=24% Similarity=0.577 Sum_probs=21.0
Q ss_pred ceEEEEEeeEEEEEEcCCcceeecC
Q psy4847 270 DYFVLILEGRAEVVVGKENLVYEAG 294 (396)
Q Consensus 270 d~f~LIL~Grv~V~~G~e~~~~E~g 294 (396)
+-+++||+|++++.++.+...+..|
T Consensus 51 ~e~~~v~~G~~~~~~~~~~~~l~~G 75 (102)
T 3d82_A 51 DEVFIVMEGTLQIAFRDQNITLQAG 75 (102)
T ss_dssp CEEEEEEESEEEEECSSCEEEEETT
T ss_pred cEEEEEEeCEEEEEECCEEEEEcCC
Confidence 7899999999999998876665555
No 197
>3kgz_A Cupin 2 conserved barrel domain protein; metalloprotein, structural genomics, PSI-2, protein structur initiative; 1.85A {Rhodopseudomonas palustris}
Probab=40.28 E-value=22 Score=30.16 Aligned_cols=36 Identities=17% Similarity=0.193 Sum_probs=27.9
Q ss_pred ccceEEEEEeeEEEEEEcCCcceeecCCccchhhhh
Q psy4847 268 PVDYFVLILEGRAEVVVGKENLVYEAGPFSYFGCQA 303 (396)
Q Consensus 268 ~~d~f~LIL~Grv~V~~G~e~~~~E~gpfs~~G~~a 303 (396)
+..-++.||+|++++.+|.+......|-+-++-...
T Consensus 63 ~~~E~~~Vl~G~~~v~v~g~~~~l~~Gd~i~ip~~~ 98 (156)
T 3kgz_A 63 AHVHAVMIHRGHGQCLVGETISDVAQGDLVFIPPMT 98 (156)
T ss_dssp SSCEEEEEEEEEEEEEETTEEEEEETTCEEEECTTC
T ss_pred CCcEEEEEEeCEEEEEECCEEEEeCCCCEEEECCCC
Confidence 345688999999999999988887777666654443
No 198
>1y9q_A Transcriptional regulator, HTH_3 family; transcriptional regulaator, strucutral genomics, protein structure initiative, PSI; 1.90A {Vibrio cholerae} SCOP: a.35.1.8 b.82.1.15
Probab=39.69 E-value=18 Score=31.24 Aligned_cols=37 Identities=19% Similarity=0.187 Sum_probs=29.5
Q ss_pred cccceEEEEEeeEEEEEEcCCcceeecCCccchhhhh
Q psy4847 267 KPVDYFVLILEGRAEVVVGKENLVYEAGPFSYFGCQA 303 (396)
Q Consensus 267 ~~~d~f~LIL~Grv~V~~G~e~~~~E~gpfs~~G~~a 303 (396)
.+..-|+.||+|++++.+|.+...++.|=+-+|....
T Consensus 124 h~~~E~~~Vl~G~~~~~~~~~~~~l~~GD~i~i~~~~ 160 (192)
T 1y9q_A 124 LGVIEYIHVLEGIMKVFFDEQWHELQQGEHIRFFSDQ 160 (192)
T ss_dssp TTCEEEEEEEESCEEEEETTEEEEECTTCEEEEECSS
T ss_pred CCCEEEEEEEEeEEEEEECCEEEEeCCCCEEEEcCCC
Confidence 4467899999999999999888888877766665433
No 199
>3h8u_A Uncharacterized conserved protein with double-STR beta-helix domain; YP_001338853.1; HET: 2PE; 1.80A {Klebsiella pneumoniae subsp}
Probab=39.37 E-value=18 Score=28.65 Aligned_cols=33 Identities=15% Similarity=-0.011 Sum_probs=25.5
Q ss_pred cceEEEEEeeEEEEEE-cCCcceeecCCccchhh
Q psy4847 269 VDYFVLILEGRAEVVV-GKENLVYEAGPFSYFGC 301 (396)
Q Consensus 269 ~d~f~LIL~Grv~V~~-G~e~~~~E~gpfs~~G~ 301 (396)
.+-+++||+|++++.+ |.+...++.|-+-++..
T Consensus 60 ~~e~~~Vl~G~~~~~~~~~~~~~l~~Gd~~~i~~ 93 (125)
T 3h8u_A 60 GQDTWTVISGEAEYHQGNGIVTHLKAGDIAIAKP 93 (125)
T ss_dssp CEEEEEEEECEEEEECSTTCEEEEETTEEEEECT
T ss_pred CeEEEEEEEeEEEEEECCCeEEEeCCCCEEEECC
Confidence 4678889999999999 88877777776555433
No 200
>2bnm_A Epoxidase; oxidoreductase, cupin, HTH, cation-dependant, zinc, fosfomycin; 1.7A {Streptomyces wedmorensis} SCOP: a.35.1.3 b.82.1.10 PDB: 1zz7_A 1zz8_A 1zz9_A 1zzb_A 1zz6_A 1zzc_A 2bnn_A 2bno_A 3scf_A 3scg_A 3sch_A
Probab=38.95 E-value=19 Score=31.06 Aligned_cols=34 Identities=18% Similarity=0.388 Sum_probs=25.8
Q ss_pred cccceEEEEEeeEEEEEEcC----CcceeecCCccchh
Q psy4847 267 KPVDYFVLILEGRAEVVVGK----ENLVYEAGPFSYFG 300 (396)
Q Consensus 267 ~~~d~f~LIL~Grv~V~~G~----e~~~~E~gpfs~~G 300 (396)
++..-|+.||+|++++.+|. +...+..|=+-+|.
T Consensus 138 h~~~E~~~Vl~G~~~~~~~~~~~~~~~~l~~GD~~~~~ 175 (198)
T 2bnm_A 138 HAGNEFLFVLEGEIHMKWGDKENPKEALLPTGASMFVE 175 (198)
T ss_dssp CSSCEEEEEEESCEEEEESCTTSCEEEEECTTCEEEEC
T ss_pred CCCeEEEEEEeeeEEEEECCcCCcccEEECCCCEEEeC
Confidence 34468999999999999988 76666666555553
No 201
>1sef_A Conserved hypothetical protein; structural genomics, nysgxrc target T1582, PSI, protein STRU initiative; 2.05A {Enterococcus faecalis} SCOP: b.82.1.11
Probab=37.83 E-value=17 Score=33.71 Aligned_cols=35 Identities=31% Similarity=0.603 Sum_probs=29.3
Q ss_pred cceEEEEEeeEEEEEEcCCcceeecCCccchhhhh
Q psy4847 269 VDYFVLILEGRAEVVVGKENLVYEAGPFSYFGCQA 303 (396)
Q Consensus 269 ~d~f~LIL~Grv~V~~G~e~~~~E~gpfs~~G~~a 303 (396)
+.-|+.||+|++++.+|.+....+.|-+-+|-...
T Consensus 84 ~ee~~~Vl~G~l~~~~~~~~~~L~~GD~~~~~~~~ 118 (274)
T 1sef_A 84 IQTLVYVIDGRLRVSDGQETHELEAGGYAYFTPEM 118 (274)
T ss_dssp EEEEEEEEESEEEEECSSCEEEEETTEEEEECTTS
T ss_pred ceEEEEEEEeEEEEEECCEEEEECCCCEEEECCCC
Confidence 57899999999999999998888888777765544
No 202
>1sfn_A Conserved hypothetical protein; structural genomics, nysgxrc target T1583, PSI, protein STRU initiative; 2.46A {Deinococcus radiodurans} SCOP: b.82.1.11
Probab=37.72 E-value=19 Score=32.91 Aligned_cols=35 Identities=23% Similarity=0.439 Sum_probs=29.2
Q ss_pred cceEEEEEeeEEEEEEcCCcceeecCCccchhhhh
Q psy4847 269 VDYFVLILEGRAEVVVGKENLVYEAGPFSYFGCQA 303 (396)
Q Consensus 269 ~d~f~LIL~Grv~V~~G~e~~~~E~gpfs~~G~~a 303 (396)
..-|+.||+|++++.+|.+....+.|-+-+|-...
T Consensus 68 ~ee~~~Vl~G~~~~~~~~~~~~l~~Gd~~~~p~~~ 102 (246)
T 1sfn_A 68 YQRFAFVLSGEVDVAVGGETRTLREYDYVYLPAGE 102 (246)
T ss_dssp SEEEEEEEEEEEEEECSSCEEEECTTEEEEECTTC
T ss_pred eeEEEEEEECEEEEEECCEEEEECCCCEEEECCCC
Confidence 67899999999999999998888888776665443
No 203
>2fqp_A Hypothetical protein BP2299; double-stranded beta-helix fold, structural genomics, joint for structural genomics, JCSG; HET: 1PE; 1.80A {Bordetella pertussis tohama I}
Probab=37.47 E-value=17 Score=27.65 Aligned_cols=28 Identities=18% Similarity=0.205 Sum_probs=20.4
Q ss_pred ccce-EEEEEeeEEEEEEcC--CcceeecCC
Q psy4847 268 PVDY-FVLILEGRAEVVVGK--ENLVYEAGP 295 (396)
Q Consensus 268 ~~d~-f~LIL~Grv~V~~G~--e~~~~E~gp 295 (396)
+.+. |+.||+|++++.+|. +......|-
T Consensus 37 ~~~~e~~~Vl~G~~~~~~~~g~~~~~l~~Gd 67 (97)
T 2fqp_A 37 SMDYVVVPMTTGPLLLETPEGSVTSQLTRGV 67 (97)
T ss_dssp CSCEEEEESSCEEEEEEETTEEEEEEECTTC
T ss_pred CCCcEEEEEeecEEEEEeCCCCEEEEEcCCC
Confidence 3444 999999999999986 455555553
No 204
>1rc6_A Hypothetical protein YLBA; structural genomics, NYSGXRC, SGX clone NAME 3174C1TCT3B1, T T1521, PSI, protein initiative; 2.60A {Escherichia coli} SCOP: b.82.1.11
Probab=37.37 E-value=17 Score=33.24 Aligned_cols=36 Identities=11% Similarity=0.318 Sum_probs=29.1
Q ss_pred ccceEEEEEeeEEEEEEcCCcceeecCCccchhhhh
Q psy4847 268 PVDYFVLILEGRAEVVVGKENLVYEAGPFSYFGCQA 303 (396)
Q Consensus 268 ~~d~f~LIL~Grv~V~~G~e~~~~E~gpfs~~G~~a 303 (396)
...-|+.||+|++++.+|.+....+.|-+-||-...
T Consensus 80 ~~ee~~~Vl~G~l~~~~~~~~~~L~~Gd~~~~~~~~ 115 (261)
T 1rc6_A 80 GIETFLYVISGNITAKAEGKTFALSEGGYLYCPPGS 115 (261)
T ss_dssp TEEEEEEEEESEEEEEETTEEEEEETTEEEEECTTC
T ss_pred CceEEEEEEEeEEEEEECCEEEEECCCCEEEECCCC
Confidence 367899999999999999998888877766665443
No 205
>3ibm_A Cupin 2, conserved barrel domain protein; cupin 2 family, metal-binding site, beta barrel, PSI-2, NYSG structural genomics; 2.00A {Halorhodospira halophila SL1}
Probab=37.28 E-value=24 Score=30.15 Aligned_cols=34 Identities=21% Similarity=0.221 Sum_probs=26.6
Q ss_pred ccceEEEEEeeEEEEEEcCCcceeecCCccchhh
Q psy4847 268 PVDYFVLILEGRAEVVVGKENLVYEAGPFSYFGC 301 (396)
Q Consensus 268 ~~d~f~LIL~Grv~V~~G~e~~~~E~gpfs~~G~ 301 (396)
+..-++.||+|++++.+|.+.+.+..|-+-++..
T Consensus 75 ~~~E~~~Vl~G~~~~~i~~~~~~l~~Gd~i~ip~ 108 (167)
T 3ibm_A 75 EHTHVVMVVRGHAEVVLDDRVEPLTPLDCVYIAP 108 (167)
T ss_dssp SSCEEEEEEESEEEEEETTEEEEECTTCEEEECT
T ss_pred CCcEEEEEEeCEEEEEECCEEEEECCCCEEEECC
Confidence 5788999999999999998877666665544443
No 206
>3l2h_A Putative sugar phosphate isomerase; AFE_0303, structural GEN joint center for structural genomics, JCSG; HET: MSE CXS; 1.85A {Acidithiobacillus ferrooxidans}
Probab=35.47 E-value=24 Score=29.48 Aligned_cols=34 Identities=21% Similarity=0.418 Sum_probs=27.7
Q ss_pred ccceEEEEEeeEEEEEEcCCcceeecCCccchhh
Q psy4847 268 PVDYFVLILEGRAEVVVGKENLVYEAGPFSYFGC 301 (396)
Q Consensus 268 ~~d~f~LIL~Grv~V~~G~e~~~~E~gpfs~~G~ 301 (396)
..+-|+.||+|++++.+|.+......|-+-++..
T Consensus 67 ~~~E~~~Vl~G~~~~~~~~~~~~l~~Gd~i~i~~ 100 (162)
T 3l2h_A 67 YEEEAVYVLSGKGTLTMENDQYPIAPGDFVGFPC 100 (162)
T ss_dssp SCCEEEEEEESCEEEEETTEEEEECTTCEEEECT
T ss_pred CCCEEEEEEEEEEEEEECCEEEEeCCCCEEEECC
Confidence 5788999999999999998887777776655544
No 207
>4e2q_A Ureidoglycine aminohydrolase; BI-cupin, manganese binding, endoplasmic RET hydrolase; 2.50A {Arabidopsis thaliana} PDB: 4e2s_A
Probab=35.05 E-value=20 Score=33.68 Aligned_cols=38 Identities=8% Similarity=0.279 Sum_probs=30.4
Q ss_pred CcccceEEEEEeeEEEEEEc-CCcceeecCCccchhhhh
Q psy4847 266 NKPVDYFVLILEGRAEVVVG-KENLVYEAGPFSYFGCQA 303 (396)
Q Consensus 266 g~~~d~f~LIL~Grv~V~~G-~e~~~~E~gpfs~~G~~a 303 (396)
...+.-|+.||+|++++.+| .+....+.|-+-||-...
T Consensus 87 ~h~~EEfiyVleG~l~l~l~~g~~~~L~~Gds~y~p~~~ 125 (266)
T 4e2q_A 87 PQDIERLIFVVEGAVTLTNTSSSSKKLTVDSYAYLPPNF 125 (266)
T ss_dssp CTTEEEEEEEEEECEEEEC--CCCEEECTTEEEEECTTC
T ss_pred CCCCeEEEEEEEEEEEEEECCCcEEEEcCCCEEEECCCC
Confidence 35678999999999999998 888888888777775443
No 208
>3es1_A Cupin 2, conserved barrel domain protein; YP_001165807.1; HET: MSE; 1.91A {Novosphingobium aromaticivorans dsm 12ORGANISM_TAXID}
Probab=35.03 E-value=22 Score=31.05 Aligned_cols=30 Identities=13% Similarity=0.103 Sum_probs=20.8
Q ss_pred ccceEEEEEeeEEEEEEc-CCcceeecCCccch
Q psy4847 268 PVDYFVLILEGRAEVVVG-KENLVYEAGPFSYF 299 (396)
Q Consensus 268 ~~d~f~LIL~Grv~V~~G-~e~~~~E~gpfs~~ 299 (396)
++.-|+.||+|++++.+| .+...+ +|..++
T Consensus 98 ~~eE~~~VLeGel~l~ld~ge~~~L--~~GDsi 128 (172)
T 3es1_A 98 NSIDYGIVLEGEIELELDDGAKRTV--RQGGII 128 (172)
T ss_dssp SEEEEEEEEESCEEEECGGGCEEEE--CTTCEE
T ss_pred CceEEEEEEeCEEEEEECCCeEEEE--CCCCEE
Confidence 344577999999999998 555444 444444
No 209
>1vj2_A Novel manganese-containing cupin TM1459; structural genomics, joint for structural genomics, JCSG; 1.65A {Thermotoga maritima} SCOP: b.82.1.10
Probab=34.99 E-value=26 Score=27.98 Aligned_cols=32 Identities=19% Similarity=0.400 Sum_probs=24.8
Q ss_pred ccceEEEEEeeEEEEEEcCCcceeecCCccch
Q psy4847 268 PVDYFVLILEGRAEVVVGKENLVYEAGPFSYF 299 (396)
Q Consensus 268 ~~d~f~LIL~Grv~V~~G~e~~~~E~gpfs~~ 299 (396)
+..-+++||+|++++.+|.+...+..|-.-++
T Consensus 67 ~~~e~~~Vl~G~~~~~i~~~~~~l~~Gd~i~i 98 (126)
T 1vj2_A 67 PWEHEIFVLKGKLTVLKEQGEETVEEGFYIFV 98 (126)
T ss_dssp SSCEEEEEEESEEEEECSSCEEEEETTEEEEE
T ss_pred CCcEEEEEEEeEEEEEECCEEEEECCCCEEEE
Confidence 46789999999999999888766666644443
No 210
>1o4t_A Putative oxalate decarboxylase; double-stranded beta-helix fold, structural genomics, joint for structural genomics, JCSG; 1.95A {Thermotoga maritima} SCOP: b.82.1.9
Probab=34.56 E-value=23 Score=28.79 Aligned_cols=32 Identities=16% Similarity=0.122 Sum_probs=25.1
Q ss_pred cceEEEEEeeEEEEEEcCCcceeecCCccchh
Q psy4847 269 VDYFVLILEGRAEVVVGKENLVYEAGPFSYFG 300 (396)
Q Consensus 269 ~d~f~LIL~Grv~V~~G~e~~~~E~gpfs~~G 300 (396)
..-+++||+|++++.+|.+....+.|-.-++.
T Consensus 78 ~~E~~~Vl~G~~~~~i~~~~~~l~~Gd~i~i~ 109 (133)
T 1o4t_A 78 EFEIYYILLGEGVFHDNGKDVPIKAGDVCFTD 109 (133)
T ss_dssp EEEEEEEEESEEEEEETTEEEEEETTEEEEEC
T ss_pred ccEEEEEEeCEEEEEECCEEEEeCCCcEEEEC
Confidence 46799999999999999887777766554444
No 211
>4axo_A EUTQ, ethanolamine utilization protein; structural protein, bacterial microcompartment, BMC; 1.00A {Clostridium difficile}
Probab=34.48 E-value=30 Score=29.61 Aligned_cols=30 Identities=10% Similarity=0.338 Sum_probs=23.2
Q ss_pred ccceEEEEEeeEEEEEEcCCcceeecCCcc
Q psy4847 268 PVDYFVLILEGRAEVVVGKENLVYEAGPFS 297 (396)
Q Consensus 268 ~~d~f~LIL~Grv~V~~G~e~~~~E~gpfs 297 (396)
+.+-++.||+|++++.+|.+.....+|=.-
T Consensus 83 ~~eE~~yVLeG~~~l~i~g~~~~l~~GD~i 112 (151)
T 4axo_A 83 NYDEIDYVIDGTLDIIIDGRKVSASSGELI 112 (151)
T ss_dssp SSEEEEEEEEEEEEEEETTEEEEEETTCEE
T ss_pred CCcEEEEEEEeEEEEEECCEEEEEcCCCEE
Confidence 567889999999999997776666555433
No 212
>2o8q_A Hypothetical protein; cpuin-like fold, structural genomics, joint center for struc genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.55A {Burkholderia xenovorans}
Probab=34.42 E-value=30 Score=27.72 Aligned_cols=31 Identities=19% Similarity=0.232 Sum_probs=24.3
Q ss_pred ceEEEEEeeEEEEEEcC-CcceeecCCccchh
Q psy4847 270 DYFVLILEGRAEVVVGK-ENLVYEAGPFSYFG 300 (396)
Q Consensus 270 d~f~LIL~Grv~V~~G~-e~~~~E~gpfs~~G 300 (396)
+-+++||+|++++.+|. +...+..|-.-++.
T Consensus 65 ~E~~~vl~G~~~~~~~~~~~~~l~~Gd~~~ip 96 (134)
T 2o8q_A 65 FQLFYVLRGWVEFEYEDIGAVMLEAGGSAFQP 96 (134)
T ss_dssp CEEEEEEESEEEEEETTTEEEEEETTCEEECC
T ss_pred cEEEEEEeCEEEEEECCcEEEEecCCCEEEEC
Confidence 78999999999999988 77666666544443
No 213
>2i45_A Hypothetical protein; neisseria meningitidis cupin domain, structural genomics, PS protein structure initiative; 2.50A {Neisseria meningitidis}
Probab=34.37 E-value=19 Score=27.73 Aligned_cols=26 Identities=19% Similarity=0.341 Sum_probs=21.0
Q ss_pred cceEEEEEeeEEEEEEcC-CcceeecC
Q psy4847 269 VDYFVLILEGRAEVVVGK-ENLVYEAG 294 (396)
Q Consensus 269 ~d~f~LIL~Grv~V~~G~-e~~~~E~g 294 (396)
.+-|+.||+|++++.++. +......|
T Consensus 48 ~~E~~~Vl~G~~~~~~~~~~~~~l~~G 74 (107)
T 2i45_A 48 SDKVLFAVEGDMAVDFADGGSMTIREG 74 (107)
T ss_dssp CCEEEEESSSCEEEEETTSCEEEECTT
T ss_pred CCEEEEEEeCEEEEEECCCcEEEECCC
Confidence 489999999999999987 65555554
No 214
>2oa2_A BH2720 protein; 10175341, structural genomics, joint center for STRU genomics, JCSG, protein structure initiative, PSI-2, unknow function; HET: MSE; 1.41A {Bacillus halodurans}
Probab=33.75 E-value=32 Score=28.38 Aligned_cols=33 Identities=21% Similarity=0.177 Sum_probs=25.1
Q ss_pred ccceEEEEEeeEEEEEEcCCc------ceeecCCccchh
Q psy4847 268 PVDYFVLILEGRAEVVVGKEN------LVYEAGPFSYFG 300 (396)
Q Consensus 268 ~~d~f~LIL~Grv~V~~G~e~------~~~E~gpfs~~G 300 (396)
..+-|+.||+|++++.+|.+. +....|-+-++.
T Consensus 63 ~~~E~~~Vl~G~~~~~i~~~~~~~~~~~~l~~Gd~i~ip 101 (148)
T 2oa2_A 63 HLDQFLRVEEGRGLVQMGHRQDNLHFQEEVFDDYAILIP 101 (148)
T ss_dssp TCEEEEEEEESEEEEEEESBTTBCCEEEEEETTCEEEEC
T ss_pred CCcEEEEEEeCEEEEEECCccccceeeEEECCCCEEEEC
Confidence 356899999999999998877 666666544443
No 215
>1sfn_A Conserved hypothetical protein; structural genomics, nysgxrc target T1583, PSI, protein STRU initiative; 2.46A {Deinococcus radiodurans} SCOP: b.82.1.11
Probab=33.17 E-value=34 Score=31.07 Aligned_cols=37 Identities=19% Similarity=0.298 Sum_probs=30.9
Q ss_pred cccceEEEEEeeEEEEEEcCCcceeecCCccchhhhh
Q psy4847 267 KPVDYFVLILEGRAEVVVGKENLVYEAGPFSYFGCQA 303 (396)
Q Consensus 267 ~~~d~f~LIL~Grv~V~~G~e~~~~E~gpfs~~G~~a 303 (396)
.....++.||+|+.++.+|.+....++|=+-|++..+
T Consensus 184 h~~ee~~~vLeG~~~~~~~~~~~~l~~GD~~~~~~~~ 220 (246)
T 1sfn_A 184 HYMEHGLLMLEGEGLYKLEENYYPVTAGDIIWMGAHC 220 (246)
T ss_dssp CSSCEEEEEEECEEEEEETTEEEEEETTCEEEECTTC
T ss_pred CCceEEEEEEECEEEEEECCEEEEcCCCCEEEECCCC
Confidence 3445799999999999999999999999888876544
No 216
>3i7d_A Sugar phosphate isomerase; YP_168127.1, structural genomics, JO center for structural genomics, JCSG, protein structure INI PSI-2; 2.30A {Ruegeria pomeroyi dss-3}
Probab=33.14 E-value=25 Score=29.83 Aligned_cols=34 Identities=24% Similarity=0.290 Sum_probs=27.3
Q ss_pred cceEEEEEeeEEEEEEcCCcceeecCCccchhhh
Q psy4847 269 VDYFVLILEGRAEVVVGKENLVYEAGPFSYFGCQ 302 (396)
Q Consensus 269 ~d~f~LIL~Grv~V~~G~e~~~~E~gpfs~~G~~ 302 (396)
.+-|+.||+|++++.+|.+...+..|-+-+|-..
T Consensus 65 ~eE~~~Vl~G~~~~~~~~~~~~l~~GD~i~ip~~ 98 (163)
T 3i7d_A 65 QDEFVMVTEGALVLVDDQGEHPMVPGDCAAFPAG 98 (163)
T ss_dssp CCEEEEEEESCEEEEETTEEEEECTTCEEEECTT
T ss_pred CcEEEEEEECEEEEEECCEEEEeCCCCEEEECCC
Confidence 3789999999999999988877777766555544
No 217
>3rns_A Cupin 2 conserved barrel domain protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, unknown function; HET: MSE; 2.07A {Leptotrichia buccalis}
Probab=31.78 E-value=30 Score=31.02 Aligned_cols=32 Identities=22% Similarity=0.393 Sum_probs=25.6
Q ss_pred cccceEEEEEeeEEEEEEcCCcceeecCCccc
Q psy4847 267 KPVDYFVLILEGRAEVVVGKENLVYEAGPFSY 298 (396)
Q Consensus 267 ~~~d~f~LIL~Grv~V~~G~e~~~~E~gpfs~ 298 (396)
++.+-++.||+|++++.+|.+......|-+-+
T Consensus 171 H~~~e~~~Vl~G~~~~~i~g~~~~l~~Gd~i~ 202 (227)
T 3rns_A 171 APGDALVTVLDGEGKYYVDGKPFIVKKGESAV 202 (227)
T ss_dssp CSSEEEEEEEEEEEEEEETTEEEEEETTEEEE
T ss_pred CCCcEEEEEEeEEEEEEECCEEEEECCCCEEE
Confidence 56778999999999999998877766665444
No 218
>3es4_A Uncharacterized protein DUF861 with A RMLC-like C; 17741406, protein of unknown function (DUF861) with A RMLC-L fold; HET: MSE; 1.64A {Agrobacterium tumefaciens str}
Probab=31.76 E-value=35 Score=27.92 Aligned_cols=31 Identities=19% Similarity=0.186 Sum_probs=20.9
Q ss_pred ccceEEEEEeeEEEEEEcCCcceeecCCccch
Q psy4847 268 PVDYFVLILEGRAEVVVGKENLVYEAGPFSYF 299 (396)
Q Consensus 268 ~~d~f~LIL~Grv~V~~G~e~~~~E~gpfs~~ 299 (396)
..|-|+.||+|+++|+... +=..+.+|..++
T Consensus 60 ~~~E~~~iLeG~~~lt~dd-G~~~~l~aGD~~ 90 (116)
T 3es4_A 60 DLEETFVVVEGEALYSQAD-ADPVKIGPGSIV 90 (116)
T ss_dssp SEEEEEEEEECCEEEEETT-CCCEEECTTEEE
T ss_pred CCcEEEEEEEeEEEEEeCC-CeEEEECCCCEE
Confidence 3468999999999998832 224455555444
No 219
>1sq4_A GLXB, glyoxylate-induced protein; structural genomics, double beta barrel protein, PSI, protei structure initiative; 2.70A {Pseudomonas aeruginosa} SCOP: b.82.1.11
Probab=31.15 E-value=26 Score=32.67 Aligned_cols=37 Identities=11% Similarity=0.294 Sum_probs=29.4
Q ss_pred cccceEEEEEeeEEEEEEcCCcceeecCCccchhhhh
Q psy4847 267 KPVDYFVLILEGRAEVVVGKENLVYEAGPFSYFGCQA 303 (396)
Q Consensus 267 ~~~d~f~LIL~Grv~V~~G~e~~~~E~gpfs~~G~~a 303 (396)
.+.+-|+.||+|++++.+|.+....+.|-+-+|-...
T Consensus 88 H~~eE~~~Vl~G~l~v~v~g~~~~L~~GD~i~ip~~~ 124 (278)
T 1sq4_A 88 PNAEAVLFVVEGELSLTLQGQVHAMQPGGYAFIPPGA 124 (278)
T ss_dssp TTEEEEEEEEESCEEEEESSCEEEECTTEEEEECTTC
T ss_pred CCceEEEEEEeCEEEEEECCEEEEECCCCEEEECCCC
Confidence 4578899999999999999888877777666665443
No 220
>3jzv_A Uncharacterized protein RRU_A2000; structural genomics, cupin-2 fold, unknown function, PSI-2, structure initiative; HET: MSE; 2.30A {Rhodospirillum rubrum}
Probab=30.05 E-value=35 Score=29.27 Aligned_cols=33 Identities=21% Similarity=0.213 Sum_probs=24.8
Q ss_pred ccceEEEEEeeEEEEEEcCCcceeecCCccchh
Q psy4847 268 PVDYFVLILEGRAEVVVGKENLVYEAGPFSYFG 300 (396)
Q Consensus 268 ~~d~f~LIL~Grv~V~~G~e~~~~E~gpfs~~G 300 (396)
+..-++.||+|++++.+|.+......|-+-++-
T Consensus 72 ~~~E~~~Vl~G~~~~~v~g~~~~l~~GD~i~ip 104 (166)
T 3jzv_A 72 QHAHGVMILKGRGHAMVGRAVSAVAPYDLVTIP 104 (166)
T ss_dssp SSCEEEEEEEECEEEEETTEEEEECTTCEEEEC
T ss_pred CCcEEEEEEeCEEEEEECCEEEEeCCCCEEEEC
Confidence 345788999999999999887666666554443
No 221
>4i4a_A Similar to unknown protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; HET: MSE; 1.35A {Photorhabdus luminescens subsp}
Probab=29.97 E-value=40 Score=26.54 Aligned_cols=34 Identities=12% Similarity=0.233 Sum_probs=26.8
Q ss_pred ccceEEEEEeeEEEEEEcCCcceeecCCccchhh
Q psy4847 268 PVDYFVLILEGRAEVVVGKENLVYEAGPFSYFGC 301 (396)
Q Consensus 268 ~~d~f~LIL~Grv~V~~G~e~~~~E~gpfs~~G~ 301 (396)
...-+++|++|++++.+|.+...+..|-.-++..
T Consensus 53 ~~~Ei~~v~~G~~~~~i~~~~~~l~~Gd~~~i~~ 86 (128)
T 4i4a_A 53 NEYELFIVIQGNAIIRINDEDFPVTKGDLIIIPL 86 (128)
T ss_dssp SSEEEEEEEESEEEEEETTEEEEEETTCEEEECT
T ss_pred CCeEEEEEEeCEEEEEECCEEEEECCCcEEEECC
Confidence 4678999999999999998877777775555443
No 222
>2f4p_A Hypothetical protein TM1010; double-stranded beta-helix fold, structural genomics, joint for structural genomics, JCSG; HET: UNL; 1.90A {Thermotoga maritima} SCOP: b.82.1.9
Probab=29.65 E-value=50 Score=27.27 Aligned_cols=33 Identities=9% Similarity=0.138 Sum_probs=25.0
Q ss_pred ccceEEEEEeeEEEEEEcCCc-ceeecCCccchh
Q psy4847 268 PVDYFVLILEGRAEVVVGKEN-LVYEAGPFSYFG 300 (396)
Q Consensus 268 ~~d~f~LIL~Grv~V~~G~e~-~~~E~gpfs~~G 300 (396)
+..-+++||+|++++.++.+. .....|-.-++.
T Consensus 67 ~~~E~~~Vl~G~~~~~~~~~~~~~l~~Gd~i~ip 100 (147)
T 2f4p_A 67 PGGQILIVTRGKGFYQERGKPARILKKGDVVEIP 100 (147)
T ss_dssp TTCEEEEEEEEEEEEEETTSCCEEEETTCEEEEC
T ss_pred CCceEEEEEeCEEEEEECCEEEEEECCCCEEEEC
Confidence 346899999999999998876 666666554443
No 223
>2q30_A Uncharacterized protein; double-stranded beta-helix fold, structural genomics, joint for structural genomics, JCSG; HET: MSE; 1.94A {Desulfovibrio desulfuricans subsp}
Probab=29.08 E-value=27 Score=26.57 Aligned_cols=24 Identities=25% Similarity=0.374 Sum_probs=18.4
Q ss_pred EEEEEeeEEEEEEc-CCcceeecCC
Q psy4847 272 FVLILEGRAEVVVG-KENLVYEAGP 295 (396)
Q Consensus 272 f~LIL~Grv~V~~G-~e~~~~E~gp 295 (396)
+++||+|++++.+| .+...+..|-
T Consensus 58 ~~~vl~G~~~~~~~~~~~~~l~~Gd 82 (110)
T 2q30_A 58 NIVVLEGEGEFVGDGDAVIPAPRGA 82 (110)
T ss_dssp EEEEEESCEEEECGGGCEEEECTTE
T ss_pred EEEEEeCEEEEEeCCCEEEEECCCC
Confidence 48999999999998 4665555553
No 224
>3ht1_A REMF protein; cupin fold, Zn-binding, antibiotic biosynthesis, resistomycin, metalloprotein, cyclase, lyase; 1.20A {Streptomyces resistomycificus} PDB: 3ht2_A
Probab=28.88 E-value=33 Score=27.59 Aligned_cols=33 Identities=15% Similarity=0.121 Sum_probs=23.4
Q ss_pred cceEEEEEeeEEEEE--EcCCcceeecCCccchhh
Q psy4847 269 VDYFVLILEGRAEVV--VGKENLVYEAGPFSYFGC 301 (396)
Q Consensus 269 ~d~f~LIL~Grv~V~--~G~e~~~~E~gpfs~~G~ 301 (396)
..-++.||+|++++. +|.+...+..|-+-++..
T Consensus 59 ~~e~~~vl~G~~~~~~~~~~~~~~l~~Gd~~~ip~ 93 (145)
T 3ht1_A 59 WEHEIYVLEGSMGLVLPDQGRTEEVGPGEAIFIPR 93 (145)
T ss_dssp SCEEEEEEEECEEEEEGGGTEEEEECTTCEEEECT
T ss_pred CceEEEEEEeEEEEEEeECCEEEEECCCCEEEECC
Confidence 344567999999999 888776666665544443
No 225
>3h7j_A Bacilysin biosynthesis protein BACB; YWFC, bacilysin synthesis, anticapsin synthesis, BI-Cu double stranded beta helix, antibiotic biosynthesis; HET: PPY; 1.87A {Bacillus subtilis} PDB: 3h7y_A* 3h9a_A*
Probab=28.40 E-value=27 Score=31.55 Aligned_cols=36 Identities=8% Similarity=0.086 Sum_probs=28.9
Q ss_pred ccceEEEEEeeEEEEEEcCCcceeecCCccchhhhh
Q psy4847 268 PVDYFVLILEGRAEVVVGKENLVYEAGPFSYFGCQA 303 (396)
Q Consensus 268 ~~d~f~LIL~Grv~V~~G~e~~~~E~gpfs~~G~~a 303 (396)
+..-|+.||+|++++.+|.+....+.|-+-++-...
T Consensus 165 ~~~e~~~Vl~G~~~~~i~~~~~~l~~Gd~i~ip~~~ 200 (243)
T 3h7j_A 165 RNEQIGICIGGGYDMTVEGCTVEMKFGTAYFCEPRE 200 (243)
T ss_dssp SSEEEEEECSSCEEEEETTEEEEECTTCEEEECTTC
T ss_pred CCcEEEEEEECEEEEEECCEEEEECCCCEEEECCCC
Confidence 457899999999999999988887777766665543
No 226
>3h7j_A Bacilysin biosynthesis protein BACB; YWFC, bacilysin synthesis, anticapsin synthesis, BI-Cu double stranded beta helix, antibiotic biosynthesis; HET: PPY; 1.87A {Bacillus subtilis} PDB: 3h7y_A* 3h9a_A*
Probab=27.13 E-value=46 Score=30.01 Aligned_cols=37 Identities=14% Similarity=0.068 Sum_probs=28.6
Q ss_pred cccceEEEEEeeEEEEEEcCCcceeecCCccc-hhhhh
Q psy4847 267 KPVDYFVLILEGRAEVVVGKENLVYEAGPFSY-FGCQA 303 (396)
Q Consensus 267 ~~~d~f~LIL~Grv~V~~G~e~~~~E~gpfs~-~G~~a 303 (396)
.+..-|+.||+|++++.+|.+...+..|-+-| +....
T Consensus 52 H~~~e~~~Vl~G~~~~~~~~~~~~l~~Gd~i~~ip~~~ 89 (243)
T 3h7j_A 52 HKEVQIGMVVSGELMMTVGDVTRKMTALESAYIAPPHV 89 (243)
T ss_dssp CSSEEEEEEEESEEEEEETTEEEEEETTTCEEEECTTC
T ss_pred CCCcEEEEEEEeEEEEEECCEEEEECCCCEEEEcCCCC
Confidence 34678999999999999998888888876554 44433
No 227
>1sef_A Conserved hypothetical protein; structural genomics, nysgxrc target T1582, PSI, protein STRU initiative; 2.05A {Enterococcus faecalis} SCOP: b.82.1.11
Probab=26.35 E-value=47 Score=30.57 Aligned_cols=37 Identities=11% Similarity=0.156 Sum_probs=30.6
Q ss_pred ccceEEEEEeeEEEEEEcCCcceeecCCccchhhhhc
Q psy4847 268 PVDYFVLILEGRAEVVVGKENLVYEAGPFSYFGCQAL 304 (396)
Q Consensus 268 ~~d~f~LIL~Grv~V~~G~e~~~~E~gpfs~~G~~aL 304 (396)
+..-++.||+|++++.+|.+....+.|=+-+|.....
T Consensus 202 ~~~E~~yVl~G~~~~~i~~~~~~l~~GD~i~i~~~~~ 238 (274)
T 1sef_A 202 VQEHGAYLISGQGMYNLDNEWYPVEKGDYIFMSAYVP 238 (274)
T ss_dssp SCCEEEEEEECEEEEEETTEEEEEETTCEEEECTTCC
T ss_pred cCeEEEEEEeCEEEEEECCEEEEECCCCEEEECCCCC
Confidence 5678999999999999999988888887777665543
No 228
>3myx_A Uncharacterized protein pspto_0244; protein of unknown function (DUF861), cupin_3 (PF05899), STR genomics; HET: MSE; 1.30A {Pseudomonas syringae PV}
Probab=26.13 E-value=46 Score=30.66 Aligned_cols=35 Identities=14% Similarity=0.351 Sum_probs=26.0
Q ss_pred cccceEEEEEeeEEEEEEcCCcceeecCCccchhh
Q psy4847 267 KPVDYFVLILEGRAEVVVGKENLVYEAGPFSYFGC 301 (396)
Q Consensus 267 ~~~d~f~LIL~Grv~V~~G~e~~~~E~gpfs~~G~ 301 (396)
-|-|-+++||+|+++|+.|.+.+.+.+|---+|..
T Consensus 63 ~p~dE~~~VleG~~~lt~~g~~~~~~~Gd~~~ip~ 97 (238)
T 3myx_A 63 YPYTEMLVMHRGSVTLTSGTDSVTLSTGESAVIGR 97 (238)
T ss_dssp CSSEEEEEEEESEEEEEETTEEEEEETTCEEEECT
T ss_pred CCCcEEEEEEEeEEEEECCCeEEEEcCCCEEEECC
Confidence 34588999999999999987776666665444443
No 229
>3cew_A Uncharacterized cupin protein; all beta-protein, jelly-roll (cupin-2), structural genomics, protein structure initiative; 2.31A {Bacteroides fragilis}
Probab=24.05 E-value=51 Score=25.98 Aligned_cols=32 Identities=19% Similarity=0.315 Sum_probs=23.9
Q ss_pred eEEE-EEeeEEEEEEcCCcceeecCCccchhhh
Q psy4847 271 YFVL-ILEGRAEVVVGKENLVYEAGPFSYFGCQ 302 (396)
Q Consensus 271 ~f~L-IL~Grv~V~~G~e~~~~E~gpfs~~G~~ 302 (396)
.+++ ||+|++++.++.+...+..|-+-++...
T Consensus 49 e~~~~vl~G~~~~~i~~~~~~l~~Gd~i~i~~~ 81 (125)
T 3cew_A 49 EEIYGILSGKGFITIDGEKIELQAGDWLRIAPD 81 (125)
T ss_dssp EEEEEEEEEEEEEEETTEEEEEETTEEEEECTT
T ss_pred eEEEEEEeCEEEEEECCEEEEeCCCCEEEECCC
Confidence 3455 9999999999988777777766555443
No 230
>1lr5_A Auxin binding protein 1; beta jellyroll, double stranded beta helix, germin-like PROT protein binding; HET: NAG BMA MAN; 1.90A {Zea mays} SCOP: b.82.1.2 PDB: 1lrh_A*
Probab=22.88 E-value=45 Score=27.82 Aligned_cols=19 Identities=16% Similarity=0.513 Sum_probs=16.5
Q ss_pred ccceEEEEEeeEEEEEEcC
Q psy4847 268 PVDYFVLILEGRAEVVVGK 286 (396)
Q Consensus 268 ~~d~f~LIL~Grv~V~~G~ 286 (396)
+..-+++||+|++++.+|.
T Consensus 60 ~~~E~~~Vl~G~~~~~~~~ 78 (163)
T 1lr5_A 60 SCEEVFTVLKGKGTLLMGS 78 (163)
T ss_dssp SSCEEEEEEECCEEEEECC
T ss_pred CCCeEEEEEeCEEEEEECC
Confidence 3456999999999999988
No 231
>1rc6_A Hypothetical protein YLBA; structural genomics, NYSGXRC, SGX clone NAME 3174C1TCT3B1, T T1521, PSI, protein initiative; 2.60A {Escherichia coli} SCOP: b.82.1.11
Probab=22.86 E-value=48 Score=30.22 Aligned_cols=36 Identities=14% Similarity=0.250 Sum_probs=29.0
Q ss_pred ccceEEEEEeeEEEEEEcCCcceeecCCccchhhhh
Q psy4847 268 PVDYFVLILEGRAEVVVGKENLVYEAGPFSYFGCQA 303 (396)
Q Consensus 268 ~~d~f~LIL~Grv~V~~G~e~~~~E~gpfs~~G~~a 303 (396)
...-|+.||+|++++.+|.+....+.|-+-+|....
T Consensus 199 ~~~E~~~Vl~G~~~~~i~~~~~~l~~GD~i~~~~~~ 234 (261)
T 1rc6_A 199 VQEHGAYILSGQGVYNLDNNWIPVKKGDYIFMGAYS 234 (261)
T ss_dssp SSCEEEEEEESEEEEESSSCEEEEETTCEEEECSSE
T ss_pred CceEEEEEEEeEEEEEECCEEEEeCCCCEEEECCCC
Confidence 356799999999999999988888888776665443
No 232
>1y3t_A Hypothetical protein YXAG; BI cupin, dioxygenase, oxidoreductase; 2.40A {Bacillus subtilis} SCOP: b.82.1.5 PDB: 2h0v_A*
Probab=22.07 E-value=52 Score=30.68 Aligned_cols=34 Identities=18% Similarity=0.368 Sum_probs=27.2
Q ss_pred cceEEEEEeeEEEEEEcCCcceeecCCccchhhh
Q psy4847 269 VDYFVLILEGRAEVVVGKENLVYEAGPFSYFGCQ 302 (396)
Q Consensus 269 ~d~f~LIL~Grv~V~~G~e~~~~E~gpfs~~G~~ 302 (396)
.+-++.||+|++++.+|.+....+.|-+-++...
T Consensus 67 ~~e~~~Vl~G~~~~~~~~~~~~l~~Gd~~~~p~~ 100 (337)
T 1y3t_A 67 THEGILVLDGKLELTLDGERYLLISGDYANIPAG 100 (337)
T ss_dssp CCEEEEEEESCEEEEETTEEEEECTTCEEEECTT
T ss_pred ceEEEEEEECEEEEEECCEEEEECCCCEEEECCC
Confidence 7889999999999999988877777765555433
Done!