RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy4847
(396 letters)
>gnl|CDD|224173 COG1253, TlyC, Hemolysins and related proteins containing CBS
domains [General function prediction only].
Length = 429
Score = 125 bits (316), Expect = 4e-32
Identities = 54/171 (31%), Positives = 87/171 (50%), Gaps = 13/171 (7%)
Query: 26 LEKDEVNIISGALELRRKIVGDVMTKLEDVYMLSYDAILDFETVSEIMKSGYSRIPVYED 85
LE++E +I+ L+L + V ++MT D+ L ++ E + I++SG+SRIPVY+
Sbjct: 189 LEEEEREMINNVLDLDDRTVREIMTPRTDIVALDLTDTVE-ELIELILESGHSRIPVYDG 247
Query: 86 RRTNIVTMFYIKDLALVDPDDNTPLKTLCQFYQNSCYFVFEDTTLDVLLKQFKEGIKGHM 145
NI+ + ++KDL D + FV E +L LL++F+E + HM
Sbjct: 248 DLDNIIGIVHVKDLLRALLDG--QSDLDLRVLVRPPLFVPETLSLSDLLEEFREE-RTHM 304
Query: 146 AFVHRVNNEGEGDPFYETVGLITLEDVIEELIQAEIMDETDVWTDNQHKTK 196
A V D + GL+TLED+IEE++ EI DE D + +
Sbjct: 305 AIVV--------DEYGGVEGLVTLEDIIEEIVG-EIPDEHDEDEEEDIIQR 346
>gnl|CDD|239963 cd04590, CBS_pair_CorC_HlyC_assoc, This cd contains two tandem
repeats of the cystathionine beta-synthase (CBS pair)
domains associated with the CorC_HlyC domain. CorC_HlyC
is a transporter associated domain. This small domain is
found in Na+/H+ antiporters, in proteins involved in
magnesium and cobalt efflux, and in association with
some proteins of unknown function. The function of the
CorC_HlyC domain is uncertain but it might be involved
in modulating transport of ion substrates. CBS is a
small domain originally identified in cystathionine
beta-synthase and subsequently found in a wide range of
different proteins. CBS domains usually come in tandem
repeats, which associate to form a so-called Bateman
domain or a CBS pair which is reflected in this model.
The interface between the two CBS domains forms a cleft
that is a potential ligand binding site. The CBS pair
coexists with a variety of other functional domains. It
has been proposed that the CBS domain may play a
regulatory role, although its exact function is unknown.
The second CBS domain in this CD is degenerate.
Length = 111
Score = 88.3 bits (220), Expect = 1e-21
Identities = 45/128 (35%), Positives = 70/128 (54%), Gaps = 24/128 (18%)
Query: 54 DVYMLSYDAILDFETVSEIMK----SGYSRIPVYEDRRTNIVTMFYIKDL--ALVDPDDN 107
D+ L D T+ EI++ SG+SR PVY+ NI+ + ++KDL AL + +++
Sbjct: 2 DIVALDADD-----TLEEILELIAESGHSRFPVYDGDLDNIIGVVHVKDLLRALAEGEED 56
Query: 108 TPLKTLCQFYQNSCYFVFEDTTLDVLLKQFKEGIKGHMAFVHRVNNEGEGDPFYETVGLI 167
L+ L + FV E T LD LL++ ++ + HMA V V+ G T GL+
Sbjct: 57 LDLRDLLR----PPLFVPESTPLDDLLEEMRKE-RSHMAIV--VDEYG------GTAGLV 103
Query: 168 TLEDVIEE 175
TLED++EE
Sbjct: 104 TLEDILEE 111
>gnl|CDD|132559 TIGR03520, GldE, gliding motility-associated protein GldE. Members
of this protein family are exclusive to the
Bacteroidetes phylum (previously
Cytophaga-Flavobacteria-Bacteroides). GldC is a protein
linked to a type of rapid surface gliding motility found
in certain Bacteroidetes, such as Flavobacterium
johnsoniae and Cytophaga hutchinsonii. GldE was
discovered because of its adjacency to GldD in F.
johnsonii. Overexpression of GldE partially supresses
the effects of a GldB point mutant suggesting that GldB
and GldE interact. Gliding motility appears closely
linked to chitin utilization in the model species
Flavobacterium johnsoniae. Not all Bacteroidetes with
members of this protein family appear to have all of the
genes associated with gliding motility and in fact some
do not appear to express the gliding phenotype.
Length = 408
Score = 87.8 bits (218), Expect = 4e-19
Identities = 59/167 (35%), Positives = 87/167 (52%), Gaps = 17/167 (10%)
Query: 21 TEFNDLEKDEVNIISGALELRRKIVGDVMTKLEDVYMLSYDAILDF-ETVSEIMKSGYSR 79
T+ D K+E I+ G + VM D++ L + F E + +I+++GYSR
Sbjct: 169 TDEEDTTKEEQKILQGIVSFGNTDTKQVMRPRLDIFALDIET--SFSEIIPKIIENGYSR 226
Query: 80 IPVYEDRRTNIVTMFYIKDLALVDPDDNTPLKTLCQFYQNSCYFVFEDTTLDVLLKQFKE 139
IPVY++ NI + YIKDL N ++L + YFV E+ LD LL+ F+E
Sbjct: 227 IPVYKETIDNITGVLYIKDLLPHLNKKNFDWQSLLR----EPYFVPENKKLDDLLRDFQE 282
Query: 140 GIKGHMAFVHRVNNEGEGDPFYETVGLITLEDVIEELIQAEIMDETD 186
K H+A V D + T GL+TLED+IEE++ +I DE D
Sbjct: 283 K-KNHLAIVV--------DEYGGTSGLVTLEDIIEEIV-GDISDEFD 319
>gnl|CDD|226911 COG4536, CorB, Putative Mg2+ and Co2+ transporter CorB [Inorganic
ion transport and metabolism].
Length = 423
Score = 78.1 bits (193), Expect = 9e-16
Identities = 48/172 (27%), Positives = 84/172 (48%), Gaps = 15/172 (8%)
Query: 26 LEKDEVNIISGALELRRKIVGDVMTKLEDVYMLSYDAILDFET-VSEIMKSGYSRIPVYE 84
+ K + +++ G L+L V D+M + ++ D +E V +++ S ++RIP+Y
Sbjct: 183 VNKIDRDMLLGVLDLENLTVSDIMVPRNE--IIGIDIDDPWEEIVRQLLHSPHTRIPLYR 240
Query: 85 DRRTNIVTMFYIKDLALVDPDDNTPLKTLCQFYQNSCYFVFEDTTLDVLLKQFKEGIKGH 144
D NI+ + +++DL + + N K + YFV E T L L F+ K H
Sbjct: 241 DDLDNIIGVLHVRDLLRLLNEKNEFTKEDILRAADEPYFVPEGTPLSDQLVAFQRN-KKH 299
Query: 145 MAFVHRVNNEGEGDPFYETVGLITLEDVIEELIQAEIMDETDVWTDNQHKTK 196
+A V V+ G + GL+TLED++EE++ + DE D T +
Sbjct: 300 IALV--VDEYG------DIQGLVTLEDILEEIV-GDFTDEHD--TLAKEVIP 340
>gnl|CDD|226910 COG4535, CorC, Putative Mg2+ and Co2+ transporter CorC [Inorganic
ion transport and metabolism].
Length = 293
Score = 64.3 bits (157), Expect = 2e-11
Identities = 49/181 (27%), Positives = 85/181 (46%), Gaps = 19/181 (10%)
Query: 22 EFNDL-EKDEVNIISGALELRRKIVGDVMTKLEDVYMLSYDAILDFETVSEIMKSGYSRI 80
E N+L + D ++++ G +++ V D+M + L + LD E + I++S +SR
Sbjct: 45 EQNELIDADTLDMLEGVMDIADLRVRDIMIPRSQMITLKRNQTLD-ECLDVIIESAHSRF 103
Query: 81 PVYEDRRTNIVTMFYIKDL--ALVDPDDNTPLKTLCQFYQNSCYFVFEDTTLDVLLKQFK 138
PV + + ++ + KDL + + +K L + V E +D LLK+F+
Sbjct: 104 PVISEDKDHVEGILLAKDLLPFMRSDAEPFDIKELLR----PAVVVPESKRVDRLLKEFR 159
Query: 139 EGIKGHMAFVHRVNNEGEGDPFYETVGLITLEDVIEELIQAEIMDETDV-WTDNQHKTKR 197
+ HMA V D F GL+T+ED++ E I +I DE D + + R
Sbjct: 160 SQ-RNHMAIVI--------DEFGGVSGLVTIEDIL-EQIVGDIEDEYDEEEDADIRQLSR 209
Query: 198 H 198
H
Sbjct: 210 H 210
>gnl|CDD|185050 PRK15094, PRK15094, magnesium/cobalt efflux protein CorC;
Provisional.
Length = 292
Score = 51.7 bits (124), Expect = 2e-07
Identities = 53/177 (29%), Positives = 84/177 (47%), Gaps = 24/177 (13%)
Query: 14 VRDHDVTTEFNDL-EKDEVNIISGALELRRKIVGDVMTKLEDVYMLSYDAILDFETVSEI 72
+RD +E NDL ++D +++ G +++ + V D+M + L + LD E + I
Sbjct: 41 IRD----SEQNDLIDEDTRDMLEGVMDIADQRVRDIMIPRSQMITLKRNQTLD-ECLDVI 95
Query: 73 MKSGYSRIPVYEDRRTNIVTMFYIKDLALVDPDDNTPL---KTLCQFYQNSCYFVFEDTT 129
++S +SR PV + + +I + KDL D K L V E
Sbjct: 96 IESAHSRFPVISEDKDHIEGILMAKDLLPFMRSDAEAFSMDKVL-----RQAVVVPESKR 150
Query: 130 LDVLLKQFKEGIKGHMAFVHRVNNEGEGDPFYETVGLITLEDVIEELIQAEIMDETD 186
+D +LK+F+ + HMA V D F GL+T+ED++ ELI EI DE D
Sbjct: 151 VDRMLKEFRS-QRYHMAIVI--------DEFGGVSGLVTIEDIL-ELIVGEIEDEYD 197
>gnl|CDD|226594 COG4109, COG4109, Predicted transcriptional regulator containing
CBS domains [Transcription].
Length = 432
Score = 38.5 bits (90), Expect = 0.006
Identities = 27/85 (31%), Positives = 47/85 (55%), Gaps = 11/85 (12%)
Query: 32 NIISGAL--ELRRK---IVGDVMTKLED-VYMLSYDAILDFETVSEIMKSGYSRIPVYED 85
+I+ AL +L +K V D+MT LED Y+ D + D+ + E K+G+SR PV +
Sbjct: 172 TMINKALSNQLIKKDIITVEDIMTPLEDTSYLRETDTVEDWLDLVE--KTGHSRFPVV-N 228
Query: 86 RRTNIVTMFYIKDLALVDPDDNTPL 110
R +V + ++D ++D +T +
Sbjct: 229 RSMKVVGVVTMRD--VLDKKPSTTI 251
>gnl|CDD|215664 pfam00027, cNMP_binding, Cyclic nucleotide-binding domain.
Length = 91
Score = 32.3 bits (74), Expect = 0.091
Identities = 13/48 (27%), Positives = 22/48 (45%), Gaps = 4/48 (8%)
Query: 264 KRNKPVDYFVLILEGRAEVVV----GKENLVYEAGPFSYFGCQALTQN 307
+ P D ++L G+ +V G+E ++ GP +FG AL
Sbjct: 12 REGDPADSLYIVLSGKVKVYKLDEDGREQILAFLGPGDFFGELALLGG 59
>gnl|CDD|201313 pfam00571, CBS, CBS domain. CBS domains are small intracellular
modules that pair together to form a stable globular
domain. This family represents a single CBS domain.
Pairs of these domains have been termed a Bateman
domain. CBS domains have been shown to bind ligands with
an adenosyl group such as AMP, ATP and S-AdoMet. CBS
domains are found attached to a wide range of other
protein domains suggesting that CBS domains may play a
regulatory role making proteins sensitive to adenosyl
carrying ligands. The region containing the CBS domains
in Cystathionine-beta synthase is involved in regulation
by S-AdoMet. CBS domain pairs from AMPK bind AMP or ATP.
The CBS domains from IMPDH and the chloride channel CLC2
bind ATP.
Length = 57
Score = 30.2 bits (69), Expect = 0.18
Identities = 15/55 (27%), Positives = 27/55 (49%), Gaps = 9/55 (16%)
Query: 123 FVFEDTTLDVLLKQFKEGIKGHMAFVHRVNNEGEGDPFYETVGLITLEDVIEELI 177
V DT+L+ L+ +E V V+ +G+ VG++TL D++ L+
Sbjct: 11 TVPPDTSLEEALELMREN-GISRLPV--VDEDGK------LVGIVTLRDLLRALL 56
Score = 28.3 bits (64), Expect = 0.84
Identities = 18/55 (32%), Positives = 29/55 (52%), Gaps = 4/55 (7%)
Query: 45 VGDVMTKLEDVYMLSYDAILDFETVSEIMKSGYSRIPVYEDRRTNIVTMFYIKDL 99
V D+MT DV + D L E + + ++G SR+PV D +V + ++DL
Sbjct: 1 VKDIMTP--DVVTVPPDTSL-EEALELMRENGISRLPVV-DEDGKLVGIVTLRDL 51
>gnl|CDD|236933 PRK11573, PRK11573, hypothetical protein; Provisional.
Length = 413
Score = 31.6 bits (72), Expect = 0.67
Identities = 41/173 (23%), Positives = 74/173 (42%), Gaps = 32/173 (18%)
Query: 9 RSFIRVRDHDVTTEFNDLEKDEVNIISGALELRRKIVG-DVMTKLEDVYMLSYDAILDFE 67
RS I R+ D+ DLEK V+ I + R +IVG D+ + +
Sbjct: 167 RSQISRRNQDMLLSVLDLEKVTVDDI---MVPRNEIVGIDINDDWKSI------------ 211
Query: 68 TVSEIMKSGYSRIPVYEDRRTNIVTMFYIKDLALVDPDDNTPLKTLCQFYQNSCYFVFED 127
+ ++ S + RI +Y D + ++M +++ + + K + YFV E
Sbjct: 212 -LRQLTHSPHGRIVLYRDSLDDAISMLRVREAYRLMTEKKEFTKENMLRAADEIYFVPEG 270
Query: 128 TTLDVLLKQFKEGIKGHMAFVHRVNNEGEG---DPFYETVGLITLEDVIEELI 177
T L L +F+ N + G D + + GL+T+ED++EE++
Sbjct: 271 TPLSTQLVKFQR------------NKKKVGLVVDEYGDIQGLVTVEDILEEIV 311
>gnl|CDD|233350 TIGR01302, IMP_dehydrog, inosine-5'-monophosphate dehydrogenase.
This model describes IMP dehydrogenase, an enzyme of GMP
biosynthesis. This form contains two CBS domains. This
model describes a rather tightly conserved cluster of
IMP dehydrogenase sequences, many of which are
characterized. The model excludes two related families
of proteins proposed also to be IMP dehydrogenases, but
without characterized members. These are related
families are the subject of separate models [Purines,
pyrimidines, nucleosides, and nucleotides, Purine
ribonucleotide biosynthesis].
Length = 450
Score = 31.5 bits (72), Expect = 0.71
Identities = 15/58 (25%), Positives = 31/58 (53%), Gaps = 5/58 (8%)
Query: 43 KIVGDVMTKLEDVYMLSYDAILDFETVSEIM-KSGYSRIPVYEDRRTNIVTMFYIKDL 99
K V +VMT+ E+V + +D E +++ + ++PV D+ +V + +KD+
Sbjct: 143 KPVSEVMTR-EEVITVPEG--IDLEEALKVLHEHRIEKLPVV-DKNGELVGLITMKDI 196
Score = 28.9 bits (65), Expect = 5.5
Identities = 31/131 (23%), Positives = 51/131 (38%), Gaps = 29/131 (22%)
Query: 53 EDVYMLSYDAILDFETVSEIM-KSGYSRIPVYEDRRTN-----IVT---MFYIKDLALVD 103
D +S + + V E+M + G S IPV ED I+T + ++KD
Sbjct: 88 SDPVTISPETTVAD--VLELMERKGISGIPVVEDGDMTGKLVGIITKRDIRFVKDKGKPV 145
Query: 104 PDDNTPLKTLCQFYQNSCYFVFEDTTLDVLLKQFKEGIKGHMAFVHRVNNEGEGDPFYET 163
+ T + + V E L+ LK E + V + E
Sbjct: 146 SEVMTREEVIT---------VPEGIDLEEALKVLHEHRIEKLPVVDKNG---------EL 187
Query: 164 VGLITLEDVIE 174
VGLIT++D+++
Sbjct: 188 VGLITMKDIVK 198
>gnl|CDD|237999 cd00038, CAP_ED, effector domain of the CAP family of transcription
factors; members include CAP (or cAMP receptor protein
(CRP)), which binds cAMP, FNR (fumarate and nitrate
reduction), which uses an iron-sulfur cluster to sense
oxygen) and CooA, a heme containing CO sensor. In all
cases binding of the effector leads to conformational
changes and the ability to activate transcription.
Cyclic nucleotide-binding domain similar to CAP are also
present in cAMP- and cGMP-dependent protein kinases
(cAPK and cGPK) and vertebrate cyclic nucleotide-gated
ion-channels. Cyclic nucleotide-monophosphate binding
domain; proteins that bind cyclic nucleotides (cAMP or
cGMP) share a structural domain of about 120 residues;
the best studied is the prokaryotic catabolite gene
activator, CAP, where such a domain is known to be
composed of three alpha-helices and a distinctive
eight-stranded, antiparallel beta-barrel structure;
three conserved glycine residues are thought to be
essential for maintenance of the structural integrity of
the beta-barrel; CooA is a homodimeric transcription
factor that belongs to CAP family; cAMP- and
cGMP-dependent protein kinases (cAPK and cGPK) contain
two tandem copies of the cyclic nucleotide-binding
domain; cAPK's are composed of two different subunits, a
catalytic chain and a regulatory chain, which contains
both copies of the domain; cGPK's are single chain
enzymes that include the two copies of the domain in
their N-terminal section; also found in vertebrate
cyclic nucleotide-gated ion-channels.
Length = 115
Score = 30.0 bits (68), Expect = 0.87
Identities = 16/49 (32%), Positives = 22/49 (44%), Gaps = 4/49 (8%)
Query: 264 KRNKPVDYFVLILEGRAEVVV----GKENLVYEAGPFSYFGCQALTQNI 308
++ P D ++L G EV G+E +V GP FG AL N
Sbjct: 30 RQGDPADSLYIVLSGSVEVYKLDEDGREQIVGFLGPGDLFGELALLGNG 78
>gnl|CDD|165291 PHA02988, PHA02988, hypothetical protein; Provisional.
Length = 283
Score = 30.1 bits (68), Expect = 1.8
Identities = 18/70 (25%), Positives = 33/70 (47%), Gaps = 7/70 (10%)
Query: 89 NIVTMFYIKDLALVDPDDNTPLKTLCQFYQNSCYFV----FEDTTLDVLLKQFKEGIKGH 144
NI+T YI D+ ++ DD ++ +N + F + +V+++ FK+ KGH
Sbjct: 2 NIITRSYINDIKCIESDDIDKYTSVL-IKENDQNSIYKGIFNNK--EVIIRTFKKFHKGH 58
Query: 145 MAFVHRVNNE 154
+ NE
Sbjct: 59 KVLIDITENE 68
>gnl|CDD|224978 COG2067, FadL, Long-chain fatty acid transport protein [Lipid
metabolism].
Length = 440
Score = 30.4 bits (69), Expect = 1.9
Identities = 15/62 (24%), Positives = 25/62 (40%), Gaps = 5/62 (8%)
Query: 303 ALTQNIGIAESPTNNSSAAQAYGG--SLQSVNLDSILRYTFVPDYSV--RATTEMFYVKI 358
+ G+A +N + +GG LQS+NL+ Y +SV K+
Sbjct: 125 SFYVPYGLATEYDDNWAGGS-FGGDTKLQSINLNPSGSYRVNDGFSVGLGLIAVYASAKL 183
Query: 359 RR 360
+R
Sbjct: 184 KR 185
>gnl|CDD|234423 TIGR03972, rSAM_TYW1, wyosine biosynthesis protein TYW1. Members
of this protein family are the archaeal protein TWY1, a
radical SAM protein that catalyzes the second step in
creating the wye-bases, wyosine and derivatives such as
wybutosine, for tRNA base modification [Protein
synthesis, tRNA and rRNA base modification].
Length = 297
Score = 29.9 bits (68), Expect = 2.4
Identities = 9/33 (27%), Positives = 22/33 (66%)
Query: 13 RVRDHDVTTEFNDLEKDEVNIISGALELRRKIV 45
R +HDV E+++ + D +I+ +++ +RK++
Sbjct: 67 RPLEHDVGEEWDETKDDPEDIVEESIKAQRKLL 99
>gnl|CDD|226451 COG3942, COG3942, Surface antigen [General function prediction
only].
Length = 173
Score = 29.0 bits (65), Expect = 3.2
Identities = 9/20 (45%), Positives = 14/20 (70%)
Query: 136 QFKEGIKGHMAFVHRVNNEG 155
Q +G GH+A+V VN++G
Sbjct: 120 QSADGGYGHVAYVESVNSDG 139
>gnl|CDD|219618 pfam07883, Cupin_2, Cupin domain. This family represents the
conserved barrel domain of the 'cupin' superfamily
('cupa' is the Latin term for a small barrel).
Length = 70
Score = 26.8 bits (60), Expect = 4.2
Identities = 10/23 (43%), Positives = 14/23 (60%)
Query: 272 FVLILEGRAEVVVGKENLVYEAG 294
F +LEG E+ V E +V +AG
Sbjct: 21 FFYVLEGEGELTVDGEEVVLKAG 43
>gnl|CDD|197516 smart00100, cNMP, Cyclic nucleotide-monophosphate binding domain.
Catabolite gene activator protein (CAP) is a prokaryotic
homologue of eukaryotic cNMP-binding domains, present in
ion channels, and cNMP-dependent kinases.
Length = 120
Score = 27.0 bits (60), Expect = 7.7
Identities = 18/54 (33%), Positives = 25/54 (46%), Gaps = 4/54 (7%)
Query: 264 KRNKPVDYFVLILEGRAEVVV----GKENLVYEAGPFSYFGCQALTQNIGIAES 313
++ D F +I+ G EV G+E +V GP +FG AL N A S
Sbjct: 30 RQGDVGDSFYIIVSGEVEVYKVLEDGEEQIVGTLGPGDFFGELALLTNSRRAAS 83
>gnl|CDD|182860 PRK10949, PRK10949, protease 4; Provisional.
Length = 618
Score = 28.1 bits (63), Expect = 8.9
Identities = 12/33 (36%), Positives = 20/33 (60%)
Query: 215 SEAQRIHISPQLNLATFQFLSSNFYVGSLLDRI 247
S A +I++SPQ + F ++ Y SLLD++
Sbjct: 164 SFANKIYLSPQGVVDLHGFATNGLYYKSLLDKL 196
>gnl|CDD|147995 pfam06128, Shigella_OspC, Shigella flexneri OspC protein. This
family consists of the Shigella flexneri specific
protein OspC. The function of this family is unknown but
it is thought that Osp proteins may be involved in post
invasion events related to virulence. Since bacterial
pathogens adapt to multiple environments during the
course of infecting a host, it has been proposed that
Shigella evolved a mechanism to take advantage of a
unique intracellular cue, which is mediated through
MxiE, to express proteins when the organism reaches the
eukaryotic cytosol.
Length = 284
Score = 27.9 bits (62), Expect = 9.4
Identities = 12/39 (30%), Positives = 20/39 (51%), Gaps = 3/39 (7%)
Query: 324 YGGSLQSVNLDSILRYTFVPDYSV---RATTEMFYVKIR 359
Y ++Q V LD I+ + F +Y + +TT K+R
Sbjct: 115 YDKNMQPVALDRIINFVFQAEYHIPRMMSTTNFKKHKLR 153
>gnl|CDD|192556 pfam10363, DUF2435, Protein of unknown function (DUF2435). This is
a conserved region of approximately 400 residues which
is found only in eukaryotes. It is associated with HEAT
domains pfam02985 in all members. The function is not
known.
Length = 93
Score = 26.4 bits (59), Expect = 9.8
Identities = 11/25 (44%), Positives = 15/25 (60%), Gaps = 1/25 (4%)
Query: 96 IKDLA-LVDPDDNTPLKTLCQFYQN 119
IK LA L + D +T L TL + Y +
Sbjct: 65 IKGLAALAERDPDTVLPTLLEEYAD 89
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.319 0.134 0.382
Gapped
Lambda K H
0.267 0.0685 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 20,012,447
Number of extensions: 1940338
Number of successful extensions: 1639
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1625
Number of HSP's successfully gapped: 35
Length of query: 396
Length of database: 10,937,602
Length adjustment: 99
Effective length of query: 297
Effective length of database: 6,546,556
Effective search space: 1944327132
Effective search space used: 1944327132
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 60 (27.0 bits)