RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy4847
(396 letters)
>3lhh_A CBS domain protein; structural genomics, PSI-2, protein structure
initiative, midwest center for structural genomics,
MCSG, cell membrane; HET: MSE AMP; 2.10A {Shewanella
oneidensis}
Length = 172
Score = 117 bits (295), Expect = 1e-31
Identities = 37/162 (22%), Positives = 68/162 (41%), Gaps = 16/162 (9%)
Query: 26 LEKDEVNIISGALELRRKIVGDVMTKLEDVYMLSYDAILDFETVSEIMKSGYSRIPVYED 85
+E +E ++ L + + +M D+ L + LD + +M+S +SR PV +
Sbjct: 25 IEHNEHAMVKNVFRLDERTISSLMVPRSDIVFLDLNLPLD-ANLRTVMQSPHSRFPVCRN 83
Query: 86 RRTNIVTMFYIKDL-ALVDPDDNTPLKTLCQFYQNSCYFVFEDTTLDVLLKQFKEGIKGH 144
++V + K L + + L L + +C FV + LL+ F+
Sbjct: 84 NVDDMVGIISAKQLLSESIAGERLELVDLVK----NCNFVPNSLSGMELLEHFRTT-GSQ 138
Query: 145 MAFVHRVNNEGEGDPFYETVGLITLEDVIEELIQAEIMDETD 186
M FV D + + GL+TL+D+++ L E E
Sbjct: 139 MVFVV--------DEYGDLKGLVTLQDMMDALT-GEFFQEDG 171
>3ocm_A Putative membrane protein; structural genomics, PSI-2, protein
structure initiative, MI center for structural genomics,
MCSG; HET: ADP; 1.80A {Bordetella parapertussis}
Length = 173
Score = 115 bits (290), Expect = 6e-31
Identities = 36/170 (21%), Positives = 59/170 (34%), Gaps = 15/170 (8%)
Query: 17 HDVTTEFNDLEKDEVNIISGALELRRKIVGDVMTKLEDVYMLSYDAILDFETVSEIMKSG 76
+E N++SG L L + + +MT DV ++ D ++ +
Sbjct: 10 PSAMPAVPAFGVEERNMVSGVLTLAERSIRSIMTPRTDVSWVNIDDDAA-TIRQQLTAAP 68
Query: 77 YSRIPVYEDRRTNIVTMFYIKDLALVDPDDNTPLKTLCQFYQNSCYFVFEDTTLDVLLKQ 136
+S PV +V + KDL + + + V E + L+
Sbjct: 69 HSFFPVCRGSLDEVVGIGRAKDLVADLITEGRVRRNRLR----DPIIVHESIGILRLMDT 124
Query: 137 FKEGIKGHMAFVHRVNNEGEGDPFYETVGLITLEDVIEELIQAEIMDETD 186
K +G + V D F GL+T DV E I E DE +
Sbjct: 125 LKRS-RGQLVLVA--------DEFGAIEGLVTPIDVFEA-IAGEFPDEDE 164
>3oco_A Hemolysin-like protein containing CBS domains; structural genomics,
PSI-2, protein structure initiative, MI center for
structural genomics, MCSG; 2.20A {Oenococcus oeni}
Length = 153
Score = 110 bits (279), Expect = 2e-29
Identities = 37/165 (22%), Positives = 72/165 (43%), Gaps = 17/165 (10%)
Query: 24 NDLEKDEVNIISGALELRRKIVGDVMTKLEDVYMLSYDAILDFETVSEIMKSGYSRIPVY 83
++ ++++ N + A E+ K+ DVM + ++ D + + + ++ YSR PV
Sbjct: 1 SNADEEDANFMQRAFEMNDKVASDVMVDRTSMSVVDVDETIA-DALLLYLEEQYSRFPVT 59
Query: 84 EDRRT-NIVTMFYIKDL-ALVDPDDNTPLKTLCQFYQNSCYFVFEDTTLDVLLKQFKEGI 141
D I+ Y D+ DD + T+ + V E+ + ++++
Sbjct: 60 ADNDKDKIIGYAYNYDIVRQARIDDKAKISTIMR----DIVSVPENMKVPDVMEEMSAH- 114
Query: 142 KGHMAFVHRVNNEGEGDPFYETVGLITLEDVIEELIQAEIMDETD 186
+ MA V + D + T G+IT +DV EE + + DE D
Sbjct: 115 RVPMAIV--I------DEYGGTSGIITDKDVYEE-LFGNLRDEQD 150
>3lv9_A Putative transporter; CBS domain, PSI, MCSG, structural genomics,
protein structur initiative, midwest center for
structural genomics; 2.40A {Clostridium difficile 630}
Length = 148
Score = 104 bits (263), Expect = 2e-27
Identities = 30/153 (19%), Positives = 74/153 (48%), Gaps = 15/153 (9%)
Query: 26 LEKDEVNIISGALELRRKIVGDVMTKLEDVYMLSYDAILDFETVSEIMKSGYSRIPVYED 85
+++ E ++ E K + ++M D+ + + + ++ + + G +R PV
Sbjct: 6 IDESEQRLVDNIFEFEEKKIREIMVPRTDMVCIYESDSEE-KILAILKEEGVTRYPVCRK 64
Query: 86 RRTNIVTMFYIKDL-ALVDPDDNTPLKTLCQFYQNSCYFVFEDTTLDVLLKQFKEGIKGH 144
+ +I+ +I+DL ++ L+ + + ++ E+ T+D L++ ++ K
Sbjct: 65 NKDDILGFVHIRDLYNQKINENKIELEEILR----DIIYISENLTIDKALERIRKE-KLQ 119
Query: 145 MAFVHRVNNEGEGDPFYETVGLITLEDVIEELI 177
+A V V D + T G++T+ED++EE++
Sbjct: 120 LAIV--V------DEYGGTSGVVTIEDILEEIV 144
>3oi8_A Uncharacterized protein; structural genomics, PSI-2, protein
structure initiative, MI center for structural genomics,
MCSG; HET: ADN; 1.99A {Neisseria meningitidis serogroup
B}
Length = 156
Score = 104 bits (263), Expect = 3e-27
Identities = 38/158 (24%), Positives = 71/158 (44%), Gaps = 15/158 (9%)
Query: 18 DVTTEFNDLEKDEVNIISGALELRRKIVGDVMTKLEDVYMLSYDAILDFETVSEIMKSGY 77
E + D + + L+ V D M + +L + ++ + ++ + +
Sbjct: 13 RQAHEQEVFDADTLLRLEKVLDFSDLEVRDAMITRSRMNVLKENDSIE-RITAYVIDTAH 71
Query: 78 SRIPVYEDRRTNIVTMFYIKDL-ALVDPDDNTPLKTLCQFYQNSCYFVFEDTTLDVLLKQ 136
SR PV + + ++ + + KDL + + LK++ + FV E +L LLK+
Sbjct: 72 SRFPVIGEDKDEVLGILHAKDLLKYMFNPEQFHLKSILR----PAVFVPEGKSLTALLKE 127
Query: 137 FKEGIKGHMAFVHRVNNEGEGDPFYETVGLITLEDVIE 174
F+E + HMA V + D + T GL+T ED+IE
Sbjct: 128 FREQ-RNHMAIV--I------DEYGGTSGLVTFEDIIE 156
>3lfr_A Putative metal ION transporter; CBS, AMP, PSI, MCSG, structural
genomics, midwest center for structural genomics; HET:
AMP; 1.53A {Pseudomonas syringae}
Length = 136
Score = 102 bits (257), Expect = 1e-26
Identities = 41/148 (27%), Positives = 68/148 (45%), Gaps = 18/148 (12%)
Query: 43 KIVGDVMTKLEDVYMLSYDAILDFETVSEIMKSGYSRIPVYEDRRTNIVTMFYIKDL--- 99
V D+M + + E + ++ + +SR PV + +++ + KDL
Sbjct: 3 LQVRDIMVPRSQMISIKATQTPR-EFLPAVIDAAHSRYPVIGESHDDVLGVLLAKDLLPL 61
Query: 100 ALVDPDDNTPLKTLCQFYQNSCYFVFEDTTLDVLLKQFKEGIKGHMAFVHRVNNEGEGDP 159
L D+ +K L + FV E L+VLL++F+ HMA V + D
Sbjct: 62 ILKADGDSDDVKKLLR----PATFVPESKRLNVLLREFRAN-HNHMAIV--I------DE 108
Query: 160 FYETVGLITLEDVIEELIQAEIMDETDV 187
+ GL+T+EDV+E+ I +I DE DV
Sbjct: 109 YGGVAGLVTIEDVLEQ-IVGDIEDEHDV 135
>3jtf_A Magnesium and cobalt efflux protein; CBS domain, CORC, AMP,
structural genomics, PSI-2, protein S initiative; HET:
MSE AMP; 2.00A {Bordetella parapertussis}
Length = 129
Score = 97.9 bits (245), Expect = 6e-25
Identities = 38/135 (28%), Positives = 70/135 (51%), Gaps = 14/135 (10%)
Query: 43 KIVGDVMTKLEDVYMLSYDAILDFETVSEIMKSGYSRIPVYEDRRTNIVTMFYIKDLALV 102
+ V D+M + +L L + ++ I+++ +SR PVYED R NI+ + KDL
Sbjct: 5 RTVADIMVPRSRMDLLDISQPLP-QLLATIIETAHSRFPVYEDDRDNIIGILLAKDLLRY 63
Query: 103 DPDDNTPLKTLCQFYQNSCYFVFEDTTLDVLLKQFKEGIKGHMAFVHRVNNEGEGDPFYE 162
+ +++L + F+ E L+VLL++F+ + H+A V + D
Sbjct: 64 MLEPALDIRSLVR----PAVFIPEVKRLNVLLREFRAS-RNHLAIV--I------DEHGG 110
Query: 163 TVGLITLEDVIEELI 177
GL+T+EDV+E+++
Sbjct: 111 ISGLVTMEDVLEQIV 125
>3i8n_A Uncharacterized protein VP2912; APC64273.1, vibrio parahaemolyticus
RIMD 2210633, structural genomics, PSI-2; 2.15A {Vibrio
parahaemolyticus}
Length = 130
Score = 96.3 bits (241), Expect = 2e-24
Identities = 30/137 (21%), Positives = 55/137 (40%), Gaps = 16/137 (11%)
Query: 43 KIVGDVMTKLEDVYMLSYDAILDFETVSEIMKSGYSRIPVYEDRRTNIVTMFYIKDL--A 100
V VMT V+ + ++ E + + + +SR VY +++ NI+ + +L
Sbjct: 6 VPVTQVMTPRPVVFRVDATMTIN-EFLDKHKDTPFSRPLVYSEQKDNIIGFVHRLELFKM 64
Query: 101 LVDPDDNTPLKTLCQFYQNSCYFVFEDTTLDVLLKQFKEGIKGHMAFVHRVNNEGEGDPF 160
L + + V +T L + Q + +A V V D +
Sbjct: 65 QQSGSGQKQLGAVMR----PIQVVLNNTALPKVFDQMMTH-RLQLALV--V------DEY 111
Query: 161 YETVGLITLEDVIEELI 177
+GL+TLED+ E L+
Sbjct: 112 GTVLGLVTLEDIFEHLV 128
>3nqr_A Magnesium and cobalt efflux protein CORC; structural genomics,
PSI-2, protein structure initiative, MI center for
structural genomics; HET: AMP; 2.00A {Salmonella
typhimurium}
Length = 127
Score = 95.2 bits (238), Expect = 5e-24
Identities = 35/137 (25%), Positives = 65/137 (47%), Gaps = 16/137 (11%)
Query: 43 KIVGDVMTKLEDVYMLSYDAILDFETVSEIMKSGYSRIPVYEDRRTNIVTMFYIKDL--A 100
+ V D+M + L + LD E + I++S +SR PV + + +I + KDL
Sbjct: 3 QRVRDIMIPRSQMITLKRNQTLD-ECLDVIIESAHSRFPVISEDKDHIEGILMAKDLLPF 61
Query: 101 LVDPDDNTPLKTLCQFYQNSCYFVFEDTTLDVLLKQFKEGIKGHMAFVHRVNNEGEGDPF 160
+ + + + + + V E +D +LK+F+ + HMA V + D F
Sbjct: 62 MRSDAEAFSMDKVLR----TAVVVPESKRVDRMLKEFRSQ-RYHMAIV--I------DEF 108
Query: 161 YETVGLITLEDVIEELI 177
GL+T+ED++E ++
Sbjct: 109 GGVSGLVTIEDILELIV 125
>3hf7_A Uncharacterized CBS-domain protein; CSB-domain PAIR, AMP, PSI,
MCSG, STR genomics, midwest center for structural
genomics; HET: AMP; 2.75A {Klebsiella pneumoniae subsp}
Length = 130
Score = 94.4 bits (236), Expect = 1e-23
Identities = 30/137 (21%), Positives = 60/137 (43%), Gaps = 18/137 (13%)
Query: 45 VGDVMTKLEDVYMLSYDAILDFETVSEIMKSGYSRIPVYEDRRTNIVTMFYIKDL--ALV 102
V D+M ++ + + V ++ S + RI +Y D + ++M +++ +
Sbjct: 4 VNDIMVPRNEIVGIDINDDWK-SIVRQLTHSPHGRIVLYRDSLDDAISMLRVREAYRLMT 62
Query: 103 DPDDNTP--LKTLCQFYQNSCYFVFEDTTLDVLLKQFKEGIKGHMAFVHRVNNEGEGDPF 160
+ + T + YFV E T L L +F+ K + V V D +
Sbjct: 63 EKKEFTKEIMLRAAD----EIYFVPEGTPLSTQLVKFQRN-KKKVGLV--V------DEY 109
Query: 161 YETVGLITLEDVIEELI 177
+ GL+T+ED++EE++
Sbjct: 110 GDIQGLVTVEDILEEIV 126
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 54.1 bits (129), Expect = 6e-08
Identities = 36/343 (10%), Positives = 89/343 (25%), Gaps = 104/343 (30%)
Query: 4 HPQGLRSF-------IRVRDHDVTTEFNDLEKDEVNIISG--------ALELRRKIVGDV 48
+ + +F + R VT + +++ L K +
Sbjct: 255 NAKAWNAFNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCR 314
Query: 49 MTKL--------------------EDVYMLSYDAILDFETVSEIMKSGYSRIPVYEDRRT 88
L + + ++ + ++ I++S + + E R+
Sbjct: 315 PQDLPREVLTTNPRRLSIIAESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEPAEYRK- 373
Query: 89 NIVTMFYIKDLALVDPDDNTPLKTLCQFYQNSCYFVFEDTT-----LDVLLKQFKEG--- 140
L++ P + P L + + ++ KQ KE
Sbjct: 374 ------MFDRLSVFPPSAHIPTILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKESTIS 427
Query: 141 -------IKGH---MAFVHR-----------VNNEGEGDP-----FYETVG--LITLE-- 170
+K +HR +++ P FY +G L +E
Sbjct: 428 IPSIYLELKVKLENEYALHRSIVDHYNIPKTFDSDDLIPPYLDQYFYSHIGHHLKNIEHP 487
Query: 171 ---DVIEEL------IQAEIMDETDVWTDN--------------QHKTKRHKQSSHRGQD 207
+ + ++ +I ++ W + + +
Sbjct: 488 ERMTLFRMVFLDFRFLEQKIRHDSTAWNASGSILNTLQQLKFYKPYICDNDPKYERLVNA 547
Query: 208 FTLFAEKSEAQRIHISPQLNLATFQFLSSNFYVGSLLDRITQK 250
F K E + S +L ++ + + + Q+
Sbjct: 548 ILDFLPKIEEN-LICSKYTDLLRIALMAEDEAIFEEAHKQVQR 589
Score = 45.6 bits (107), Expect = 2e-05
Identities = 46/308 (14%), Positives = 90/308 (29%), Gaps = 78/308 (25%)
Query: 14 VRDHDVTTEFNDLEKDEVNI--IS-GALELRRKIVGDVMTKLEDVYMLSYDAILDFETVS 70
+ V + + I ++ V+ L+ L Y ++ + S
Sbjct: 171 CLSYKVQCKMDF------KIFWLNLK----NCNSPETVLEMLQK---LLYQIDPNWTSRS 217
Query: 71 EIMKSGYSRIPVYEDRRTNIVTMFYIKDL--ALVDPDDNTPLKTLCQFYQNSCYFVFEDT 128
+ + RI + + + K L+ + K F SC + T
Sbjct: 218 DHSSNIKLRI---HSIQAELRRLLKSKPYENCLLVLLNVQNAKAWNAF-NLSCKILL--T 271
Query: 129 TLDVLLKQF-KEGIKGHMAFVHRVNNEGEGDPFYETVGL------ITLEDVIEE------ 175
T + F H++ H E L +D+ E
Sbjct: 272 TRFKQVTDFLSAATTTHISLDHHSMTLTPD----EVKSLLLKYLDCRPQDLPREVLTTNP 327
Query: 176 ----LIQAEIMDETDVWTDN-QH----KTKRHKQSS--------HRG--QDFTLFAEKSE 216
+I I D W DN +H K +SS +R ++F
Sbjct: 328 RRLSIIAESIRDGLATW-DNWKHVNCDKLTTIIESSLNVLEPAEYRKMFDRLSVFPPS-- 384
Query: 217 AQRIHISPQLNLATFQFLSSNFYVGSLLDRITQKGTSQQKPTFKSLKKRNKPVDYFV--L 274
HI L L+ F V +++++ + ++K+ K + +
Sbjct: 385 ---AHIPTIL-LSLIWFDVIKSDVMVVVNKLHKYS---------LVEKQPKESTISIPSI 431
Query: 275 ILEGRAEV 282
LE + ++
Sbjct: 432 YLELKVKL 439
Score = 32.9 bits (74), Expect = 0.19
Identities = 32/258 (12%), Positives = 71/258 (27%), Gaps = 54/258 (20%)
Query: 144 HMAFVHRVNNEGEGDPFYETVGLITLEDVIEELIQAEIMDET-DVWT----DNQHKTKRH 198
HM F GE Y+ + + + ++ ++ D + + D+ +K
Sbjct: 6 HMDF-----ETGEHQYQYKDILSVFEDAFVDNFDCKDVQDMPKSILSKEEIDHIIMSKDA 60
Query: 199 KQSSHRGQDFTLFAEKSE------------------AQRIH---ISPQLNLATFQFLSSN 237
+ R F K E I P + +
Sbjct: 61 VSGTLR--LFWTLLSKQEEMVQKFVEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQRDR 118
Query: 238 FYVGSLLDRITQKGTSQQKPTFKSLKK---RNKPVDYFVLILEGRAEVVVGKENLVYEA- 293
Y + ++ K + + L++ +P ++++G GK + +
Sbjct: 119 LYNDN---QVFAKYNVSRLQPYLKLRQALLELRPAKN--VLIDGVLG--SGKTWVALDVC 171
Query: 294 ---GPFSYFGCQALTQNIGIAESPTNNSSAAQAYGGSLQSVNLDSILRYTFVPDYSVRAT 350
+ N+ SP + LQ + +T D+S
Sbjct: 172 LSYKVQCKMDFKIFWLNLKNCNSP--ETVLEM-----LQKLLYQIDPNWTSRSDHSSNIK 224
Query: 351 TEMFYVKIRRSFYLAAKR 368
+ ++ L +K
Sbjct: 225 LRIHSIQAELRRLLKSKP 242
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 48.1 bits (114), Expect = 4e-06
Identities = 70/420 (16%), Positives = 137/420 (32%), Gaps = 128/420 (30%)
Query: 8 LR-SFIRVRDHDVTTEFNDLEKDEVNIISGALELRRKIVGDVMTKLEDVYMLSYDAIL-- 64
L+ F ++ + T F DE + EL K +G V + +E + +D +L
Sbjct: 33 LQEQFNKIL-PEPTEGFA--ADDE---PTTPAELVGKFLGYVSSLVEPSKVGQFDQVLNL 86
Query: 65 ---DFETVSEIMKSGYSRIPVYEDRRTNIVTMFYIKDLALVDPDDNTPL---KTLCQFYQ 118
+FE + ++ +I + A + +++T L K L + Y
Sbjct: 87 CLTEFE--NCYLEG------------NDIHAL-----AAKLLQENDTTLVKTKELIKNYI 127
Query: 119 NSCYFV---FEDTTLDVLLKQFKEGIKGHMA-FVHRVNNEGEGDPFYETVGLITLEDVIE 174
+ F+ + L + EG +A F G+G+ +D E
Sbjct: 128 TARIMAKRPFDKKSNSALFRAVGEGNAQLVAIF------GGQGNT----------DDYFE 171
Query: 175 ELIQAEIMDETDVWTDNQHKTKRHKQSSHRGQDFTLFAEKSEAQRIHISPQLNLATFQFL 234
EL ++ ++T D F+ A+ + + L +
Sbjct: 172 EL--RDL-----------YQT-----YHVLVGDLIKFS----AETLSELIRTTLDAEKVF 209
Query: 235 SSNFYVGSLLDRITQKGTSQQKPTFKSLKKRNKPVDY-------FVLI-LEGRAEVVVGK 286
+ + L+ P DY LI + A VV
Sbjct: 210 TQGLNILEWLE------NPSNTP----------DKDYLLSIPISCPLIGVIQLAHYVVTA 253
Query: 287 ENLVYEAGPFSYFGCQALTQNIGIAESPTNNSSAAQAYGGSLQSVNLDSILRYTFVPDYS 346
+ L + G + A + G+ ++ A A S +S F
Sbjct: 254 KLLGFTPGELRSYLKGATGHSQGLV------TAVAIAETDSWES----------FF-VSV 296
Query: 347 VRATTEMFYVKIR--RSFYLAAKRATLMEKSKKSEE----SMSA--G---DQFEDEVEKC 395
+A T +F++ +R ++ + +++E S ++ E M + +Q +D V K
Sbjct: 297 RKAITVLFFIGVRCYEAYPNTSLPPSILEDSLENNEGVPSPMLSISNLTQEQVQDYVNKT 356
Score = 46.2 bits (109), Expect = 2e-05
Identities = 58/383 (15%), Positives = 118/383 (30%), Gaps = 166/383 (43%)
Query: 52 LEDVYMLSYDAILD--FETVSEIMKSGYSRIPVYEDRRTNIVTMFYIKDLALVD------ 103
L D+Y +Y ++ + +E + R + ++ + + L +++
Sbjct: 173 LRDLY-QTYHVLVGDLIKFSAETLSE-LIRTTLDAEK-------VFTQGLNILEWLENPS 223
Query: 104 --PDDNT--------PLKTLCQFYQNSCYFV----------------------------- 124
PD + PL + Q + Y V
Sbjct: 224 NTPDKDYLLSIPISCPLIGVIQL---AHYVVTAKLLGFTPGELRSYLKGATGHSQGLVTA 280
Query: 125 -----------FEDTTLDVLLKQFKEGIKGHMAF---------VHRVNNEGEGDPFYETV 164
F + + F G++ + A+ + EG P
Sbjct: 281 VAIAETDSWESFFVSVRKAITVLFFIGVRCYEAYPNTSLPPSILEDSLENNEGVPSP--- 337
Query: 165 GLITLEDVIEELIQAEIMDETDVWTDNQHKTKRHKQSSHRGQDFTLFAEKSEAQRIHISP 224
++++ ++ +E +Q + ++T N H +++ IS
Sbjct: 338 -MLSISNLTQEQVQDYV-NKT-----NSH--------------------LPAGKQVEIS- 369
Query: 225 QL-NLATFQFLSSNFYV-G---SL--LDRITQKGT------------SQQKPTFKS--LK 263
L N A N V G SL L+ +K S++K F + L
Sbjct: 370 -LVNGAK------NLVVSGPPQSLYGLNLTLRKAKAPSGLDQSRIPFSERKLKFSNRFL- 421
Query: 264 KRNKPVD--YFVLILEGRAEVV---VGKENLVYEAGPFSYFGCQALTQNIGIAESP---T 315
PV + +L ++++ + K N+ + A ++I I P T
Sbjct: 422 ----PVASPFHSHLLVPASDLINKDLVKNNVSFNA------------KDIQI---PVYDT 462
Query: 316 NNSSAAQAYGGSLQSVNLDSILR 338
+ S + GS+ +D I+R
Sbjct: 463 FDGSDLRVLSGSISERIVDCIIR 485
Score = 33.1 bits (75), Expect = 0.19
Identities = 31/131 (23%), Positives = 42/131 (32%), Gaps = 43/131 (32%)
Query: 56 YMLS-YDAIL-DFETVSEIMKSGYSRIPVY-----EDRR---TNIVTMFYIKDLALVDPD 105
++ D I D + + +IPVY D R +I I D + P
Sbjct: 431 LLVPASDLINKDLVKNNVSFNAKDIQIPVYDTFDGSDLRVLSGSISER--IVDCIIRLPV 488
Query: 106 DNTPLKTLCQFYQNSCYFVFEDTT--LDVLLKQFKEG-IKGHMAFVHRVNNEGEGDPFYE 162
+T QF T LD F G G HR N +G G
Sbjct: 489 K---WETTTQF----------KATHILD-----FGPGGASGLGVLTHR-NKDGTG----- 524
Query: 163 TVGLI---TLE 170
V +I TL+
Sbjct: 525 -VRVIVAGTLD 534
Score = 31.9 bits (72), Expect = 0.43
Identities = 45/280 (16%), Positives = 90/280 (32%), Gaps = 108/280 (38%)
Query: 51 KLEDVYM-LSYDAILDFETVSEIMKSGYSRIPVYE--DRRTNIVTMFYIKDLALVDPDD- 106
++ + Y + ++ I+D + +E +++ + + T F
Sbjct: 1683 RIRENYSAMIFETIVDGKLKTE---------KIFKEINEHSTSYT-FR-------SEKGL 1725
Query: 107 -----NT-P-LKTLCQFYQNSCYFVFEDTTLDVLLKQFKEGIKGHMAFV--HRVNNEGEG 157
T P L + FED LK +G+ A H + GE
Sbjct: 1726 LSATQFTQPALTLM------E-KAAFED------LK--SKGLIPADATFAGHSL---GE- 1766
Query: 158 DPFY----ETVGLITLEDVIE------ELIQAEI-MDETDVWTDNQHKTKRHKQSSHR-- 204
Y ++++E ++E +Q + DE +S++
Sbjct: 1767 ---YAALASLADVMSIESLVEVVFYRGMTMQVAVPRDE-------------LGRSNYGMI 1810
Query: 205 ----GQDFTLFAEKSEAQRIHISPQLNLATFQFLS-SNF------YV--GSL--LDRITQ 249
G+ F++ EA + ++ ++ T + N+ YV G L LD +T
Sbjct: 1811 AINPGRVAASFSQ--EALQ-YVVERVGKRTGWLVEIVNYNVENQQYVAAGDLRALDTVTN 1867
Query: 250 KGTSQQKPTFKSLKKRNKPVDYFVLILEGRAEVVVGKENL 289
+K + +D L E V + +L
Sbjct: 1868 --------VLNFIKLQK--IDIIELQKSLSLEEV--EGHL 1895
>3lqn_A CBS domain protein; csgid, structural genomics, unknown function,
center for structural genomics of infectious diseases;
1.80A {Bacillus anthracis}
Length = 150
Score = 38.5 bits (90), Expect = 0.001
Identities = 25/146 (17%), Positives = 53/146 (36%), Gaps = 23/146 (15%)
Query: 39 ELRRKIVGDVMTKLEDVYMLSYDAILDFETVSEIMKSGYSRIPVYEDR--------RTNI 90
E ++ V D+M E V + L+ + ++KSGYS IPV + I
Sbjct: 11 EFQQIFVKDLMISSEKVAHVQIGNGLE-HALLVLVKSGYSAIPVLDPMYKLHGLISTAMI 69
Query: 91 VTMFYIKDLALVDPDDNTPLKTLCQFYQNSCYFVFEDTTLDVLLKQFKEGIKGHMAFVHR 150
+ + + + ++ Q + + + + L+ + F+
Sbjct: 70 LDGILGLERIEFERLEEMKVE---QVMKQDIPVLKLEDSFAKALEMTID-----HPFICA 121
Query: 151 VNNEGEGDPFYETVGLITLEDVIEEL 176
VN +G G++T +++ L
Sbjct: 122 VNEDG------YFEGILTRRAILKLL 141
>1yav_A Hypothetical protein BSU14130; cystathionine beta synthase (CBS)
domain, structural genomics, protein structure
initiative, PSI; 2.10A {Bacillus subtilis} SCOP:
d.37.1.1
Length = 159
Score = 37.8 bits (88), Expect = 0.002
Identities = 25/155 (16%), Positives = 52/155 (33%), Gaps = 24/155 (15%)
Query: 31 VNIISGALE-LRRKIVGDVMTKLEDVYMLSYDAILDFETVSEIMKSGYSRIPVYEDR--- 86
+++IS + L VG M + + V + L+ + + K+GY+ IPV +
Sbjct: 1 MSLISLQSDQLLEATVGQFMIEADKVAHVQVGNNLE-HALLVLTKTGYTAIPVLDPSYRL 59
Query: 87 -----RTNIVTMFYIKDLALVDPDDNTPLKTLCQFYQNSCYFVFEDTTLDVLLKQFKEGI 141
I+ + + + D ++ + + + +
Sbjct: 60 HGLIGTNMIMNSIFGLERIEFEKLDQITVE---EVMLTDIPRLHINDPIMKGFGMVIN-- 114
Query: 142 KGHMAFVHRVNNEGEGDPFYETVGLITLEDVIEEL 176
FV N+E G+ T V++EL
Sbjct: 115 ---NGFVCVENDEQ------VFEGIFTRRVVLKEL 140
>2ef7_A Hypothetical protein ST2348; CBS-domain, structural genomics,
NPPSFA, national project on structural and functional
analyses; 2.10A {Sulfolobus tokodaii} SCOP: d.37.1.1
Length = 133
Score = 35.3 bits (82), Expect = 0.009
Identities = 26/149 (17%), Positives = 57/149 (38%), Gaps = 21/149 (14%)
Query: 40 LRRKIVGDVMTKLEDVYMLSYDAILDFETVSEIM-KSGYSRIPVYEDRR-TNIVTMFYIK 97
+ +IV + M V ++ DA ++++M + + V + + I+T +
Sbjct: 1 MEEEIVKEYMKT--QVISVTKDA--KLNDIAKVMTEKNIGSVIVVDGNKPVGIIT---ER 53
Query: 98 DLALVDPDDNTPLKTLCQFYQNSCYFVFEDTTL-DVLLKQFKEGIKGHMAFVHRVNNEGE 156
D+ + +F S + ED+ + L + I H+ V + +
Sbjct: 54 DIVKAIGKGKSLETKAEEFMTASLITIREDSPITGALALMRQFNI-RHLPVV-----DDK 107
Query: 157 GDPFYETVGLITLEDVIEELIQ-AEIMDE 184
G+ G+I++ D+ + E M E
Sbjct: 108 GNL----KGIISIRDITRAIDDMFETMGE 132
>1pbj_A Hypothetical protein; structural genomics, domain, PSI, protein
structure initiative; 1.40A {Methanothermobacter
thermautotrophicusdelta H} SCOP: d.37.1.1
Length = 125
Score = 34.8 bits (81), Expect = 0.012
Identities = 16/69 (23%), Positives = 31/69 (44%), Gaps = 6/69 (8%)
Query: 27 EKDEVNIISGALELRRKIVGDVMTKLEDVYMLSYDAILDFETVSEIM-KSGYSRIPVYED 85
D + I+ +L V +VM + D+ +S A + + +E M K+ R+ V ED
Sbjct: 49 TWDVLEAIAEGDDLAEVKVWEVMER--DLVTISPRATI--KEAAEKMVKNVVWRLLVEED 104
Query: 86 RR-TNIVTM 93
+++
Sbjct: 105 DEIIGVISA 113
Score = 29.8 bits (68), Expect = 0.70
Identities = 22/139 (15%), Positives = 49/139 (35%), Gaps = 24/139 (17%)
Query: 45 VGDVMTKLEDVYMLSYDAILDFETVSEIMKSGYSRIPVYEDRR-TNIVTMFYIKDLALVD 103
V DVM DV + A L+ + + +++ V ++ IVT D+
Sbjct: 3 VEDVMVT--DVDTIDITASLE-DVLRNYVENAKGSSVVVKEGVRVGIVTT---WDVLEAI 56
Query: 104 PDDNTPLKT-LCQFYQNSCYFVFEDTTL-DVLLKQFKEGIKGHMAFVHR--VNNEGEGDP 159
+ + + + + + + T+ + K K + R V + E
Sbjct: 57 AEGDDLAEVKVWEVMERDLVTISPRATIKEAAEKMVKNVV-------WRLLVEEDDE--- 106
Query: 160 FYETVGLITLEDVIEELIQ 178
+G+I+ D++ +
Sbjct: 107 ---IIGVISATDILRAKMA 122
>3of1_A CAMP-dependent protein kinase regulatory subunit; cyclic nucleotide
binding domain, evolution, PKA signaling, transfer; HET:
CMP; 2.21A {Saccharomyces cerevisiae}
Length = 246
Score = 35.6 bits (82), Expect = 0.016
Identities = 10/44 (22%), Positives = 18/44 (40%)
Query: 264 KRNKPVDYFVLILEGRAEVVVGKENLVYEAGPFSYFGCQALTQN 307
+ + F LI G +V + ++ + YFG AL +
Sbjct: 161 REGDQGENFYLIEYGAVDVSKKGQGVINKLKDHDYFGEVALLND 204
Score = 34.0 bits (78), Expect = 0.059
Identities = 20/80 (25%), Positives = 34/80 (42%), Gaps = 5/80 (6%)
Query: 232 QFLSSNFYVGSL----LDRITQKGTSQQKPTFKSLKKRNKPVDYFVLILEGRAEVVVGKE 287
+ + +NF L + + P ++ K+ DYF ++ +G + V +
Sbjct: 7 KSIRNNFLFNKLDSDSKRLVINCLEEKSVPKGATIIKQGDQGDYFYVVEKGTVDFYV-ND 65
Query: 288 NLVYEAGPFSYFGCQALTQN 307
N V +GP S FG AL N
Sbjct: 66 NKVNSSGPGSSFGELALMYN 85
>3ddj_A CBS domain-containing protein; structural genomics, joint center
for structural genomics, J protein structure initiative,
PSI-2; HET: AMP; 1.80A {Sulfolobus solfataricus} SCOP:
d.37.1.1 d.37.1.1
Length = 296
Score = 35.5 bits (82), Expect = 0.025
Identities = 26/158 (16%), Positives = 59/158 (37%), Gaps = 16/158 (10%)
Query: 38 LELRRKIVGDVMTKLEDVYMLSYDAILDFETVSEIM-KSGYSRIPVYEDRRTNIVTMFYI 96
+ + D MT + + + D T IM + +PV D V +
Sbjct: 88 YHISTTPIIDYMTP--NPVTVYNTS--DEFTAINIMVTRNFGSLPVV-DINDKPVGIVTE 142
Query: 97 KDLALVDPDDNTPLKTLCQFYQNSCYFVFEDTTLDVLLKQFKEGIKGHMAFVHRVNNEGE 156
++ L+ D + + F ++++ LD +K +G ++++ +
Sbjct: 143 REF-LLLYKDLDEIFPVKVFMSTKVQTIYKEVRLDQAVKLMLR--RGFRRLP-VIDDDNK 198
Query: 157 GDPFYETVGLITLEDVIEELIQAEIMDETDVWTDNQHK 194
VG++T+ + I++L +A + D + K
Sbjct: 199 ------VVGIVTVVNAIKQLAKAVDKLDPDYFYGKVVK 230
Score = 33.6 bits (77), Expect = 0.085
Identities = 22/153 (14%), Positives = 48/153 (31%), Gaps = 28/153 (18%)
Query: 38 LELRRKIVGDVMTKLEDVYMLSYDAILDFETVSEIM-KSGYSRIPVYEDRRTNIVTMFYI 96
L + + +M K + +LS + L + + + + G RI V ++ ++T
Sbjct: 15 LYFQGMNIETLMIK--NPPILSKEDRL--GSAFKKINEGGIGRIIVANEKIEGLLT---T 67
Query: 97 KDLALVDPDDNTPLKTLCQFYQNS-----------CYFVFEDTTLDVLLKQFKEGIKGHM 145
+DL + Y S V+ + + G +
Sbjct: 68 RDLLSTVESYCKDSCSQGDLYHISTTPIIDYMTPNPVTVYNTSDEFTAINIMVTRNFGSL 127
Query: 146 AFVHRVNNEGEGDPFYETVGLITLEDVIEELIQ 178
V V+ + VG++T + +
Sbjct: 128 P-V--VDIND------KPVGIVTEREFLLLYKD 151
Score = 31.3 bits (71), Expect = 0.56
Identities = 24/160 (15%), Positives = 52/160 (32%), Gaps = 28/160 (17%)
Query: 37 ALELRRKIVGDVMTKLEDVYMLSYDAILDFETVSEIM-KSGYSRIPVYED--RRTNIVTM 93
V M+ V + + L + ++M + G+ R+PV +D + IVT
Sbjct: 150 KDLDEIFPVKVFMST--KVQTIYKEVRL--DQAVKLMLRRGFRRLPVIDDDNKVVGIVT- 204
Query: 94 FYIKDL--ALVDPDDNTPLKTLCQ-----FYQNSCYFVFEDTTL-DVLLKQFKEGIKGHM 145
+ + L D + + E ++ + + I
Sbjct: 205 --VVNAIKQLAKAVDKLDPDYFYGKVVKDVMVTNLVTIDELASVNRAAAEMIVKRIGS-- 260
Query: 146 AFVHRVNNEGEGDPFYETVGLITLEDVIEELIQAEIMDET 185
+ +N + G+IT D++ L +M++
Sbjct: 261 LLI--LNKDNT------IRGIITERDLLIALHHILVMEKF 292
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna; HET:
CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 34.2 bits (77), Expect = 0.027
Identities = 7/29 (24%), Positives = 15/29 (51%), Gaps = 6/29 (20%)
Query: 329 QSVN-LDSILRYTFVPD----YSVRATTE 352
Q++ L + L+ + D +++AT E
Sbjct: 20 QALKKLQASLK-LYADDSAPALAIKATME 47
>2emq_A Hypothetical conserved protein; CBS domains, NPPSFA, national
project on protein structural functional analyses;
2.50A {Geobacillus kaustophilus}
Length = 157
Score = 33.9 bits (78), Expect = 0.034
Identities = 11/48 (22%), Positives = 20/48 (41%), Gaps = 3/48 (6%)
Query: 39 ELRRKIVGDVMTKLEDVYMLSYDAILDFETVSEIM-KSGYSRIPVYED 85
E + V + + V + L + ++ K+GYS IPV +
Sbjct: 7 EFMQMTVKPFLIPADKVAHVQPGNYL--DHALLVLTKTGYSAIPVLDT 52
>3kh5_A Protein MJ1225; AMPK, AMP, ADP, ATP, CBS domain, archaea, unknown
function; HET: ADP AMP; 2.10A {Methanocaldococcus
jannaschii} PDB: 3lfz_A*
Length = 280
Score = 34.7 bits (80), Expect = 0.040
Identities = 24/151 (15%), Positives = 49/151 (32%), Gaps = 30/151 (19%)
Query: 40 LRRKIVGDVMTKLEDVYMLSYDAILDFETVSEIM-KSGYSRIPVYEDRR-TNIVTM---- 93
+++ D +T+ DV + + L + V+ M ++G+ R+PV + R I+T
Sbjct: 145 DENEVIDDYITR--DVIVATPGERL--KDVARTMVRNGFRRLPVVSEGRLVGIITSTDFI 200
Query: 94 -FYIKDLALVDPDDNTPLKTLCQ----FYQNSCYFVFEDTTLDVLLKQFKEGIKGHMAFV 148
D A + + E L + + +
Sbjct: 201 KLLGSDWAFNHMQTGNVREITNVRMEEIMKRDVITAKEGDKLKKIAEIMVT--ND----I 254
Query: 149 HR---VNNEGEGDPFYETVGLITLEDVIEEL 176
V+ G+IT +DV++
Sbjct: 255 GALPVVDENL------RIKGIITEKDVLKYF 279
Score = 32.0 bits (73), Expect = 0.26
Identities = 23/154 (14%), Positives = 49/154 (31%), Gaps = 29/154 (18%)
Query: 40 LRRKIVGDVMTKLEDVYMLSYDAILDFETVSEIM-KSGYSRIPVYEDRRTNIVTMFYIKD 98
+ +++ K + + + M ++ Y R+PV +V + D
Sbjct: 1 MFVRVMKIAQNK--KIVTVYPTTTI--RKALMTMNENKYRRLPVVNAGNNKVVGIITSMD 56
Query: 99 LALVDPDDNTPLKTLCQFYQNSC---------------YFVFEDTTLDVLLKQFKEGIKG 143
+ + + +N + E+ +D ++ F G
Sbjct: 57 IVDFMGGGSKYNLIREKHERNFLAAINEPVREIMEENVITLKENADIDEAIETFLTKNVG 116
Query: 144 HMAFVHRVNNEGEGDPFYETVGLITLEDVIEELI 177
+ VN+E + + LIT DVI L+
Sbjct: 117 GAP-I--VNDEN------QLISLITERDVIRALL 141
Score = 32.0 bits (73), Expect = 0.29
Identities = 8/69 (11%), Positives = 19/69 (27%), Gaps = 3/69 (4%)
Query: 14 VRDHDVTTEFNDLEKDEVNIISGALELRRKIVGDVMTKLEDVYMLSYDAILDFETVSEIM 73
+ D E+ + ++M + DV L + ++
Sbjct: 194 ITSTDFIKLLGSDWAFNHMQTGNVREITNVRMEEIMKR--DVITAKEGDKLK-KIAEIMV 250
Query: 74 KSGYSRIPV 82
+ +PV
Sbjct: 251 TNDIGALPV 259
>1vr9_A CBS domain protein/ACT domain protein; structural genomics, joint
center for structural genomics, J protein structure
initiative, PSI; HET: MSE; 1.70A {Thermotoga maritima}
SCOP: d.37.1.1
Length = 213
Score = 34.3 bits (79), Expect = 0.043
Identities = 30/150 (20%), Positives = 51/150 (34%), Gaps = 36/150 (24%)
Query: 44 IVGDVMTKLEDVYMLSYDAILDFETVSEIMK-SGYSRIPVYEDRRTN--IVTMFYIKDLA 100
V +T+ D M+ A + M+ + V + +V +DL
Sbjct: 14 KVKKWVTQ--DFPMVEESATV--RECLHRMRQYQTNECIVKDREGHFRGVVNK---EDLL 66
Query: 101 LVDPDDNTPLKTLCQFYQNSCYFVFEDTTLDVLLKQFKEGIKGHMAFVHR------VNNE 154
+D D ++ +FV E+ + L F E H+ V+ E
Sbjct: 67 DLDLD-----SSVFNKVSLPDFFVHEEDNITHALLLFLE---------HQEPYLPVVDEE 112
Query: 155 GEGDPFYETVGLITLEDVIEELIQAEIMDE 184
G ++L D +E LI+A MD
Sbjct: 113 MR------LKGAVSLHDFLEALIEALAMDV 136
>1y5h_A Hypothetical protein RV2626C; CBS domain, unknown function; 1.50A
{Mycobacterium tuberculosis} SCOP: d.37.1.1 PDB: 1xkf_A
Length = 133
Score = 32.9 bits (76), Expect = 0.056
Identities = 16/77 (20%), Positives = 34/77 (44%), Gaps = 10/77 (12%)
Query: 27 EKDEVN-IISGALELRRKIVGDVMTKLEDVYMLSYDAILDFETVSEIM-KSGYSRIPVYE 84
++D V ++ L+ G++ +Y + +A + + + +M + R+PV
Sbjct: 57 DRDIVIKGLAAGLDPNTATAGELARD--SIYYVDANASI--QEMLNVMEEHQVRRVPVIS 112
Query: 85 DRR-TNIVTMFYIKDLA 100
+ R IVT D+A
Sbjct: 113 EHRLVGIVT---EADIA 126
>3fv6_A YQZB protein; CBS domain dimer, metabolism regulator, central
glycolytic G regulator, transcription; 1.95A {Bacillus
subtilis} PDB: 3fwr_A* 3fws_A*
Length = 159
Score = 33.5 bits (77), Expect = 0.058
Identities = 16/90 (17%), Positives = 35/90 (38%), Gaps = 13/90 (14%)
Query: 27 EKDEVNIISGALELRRKIVGDVMTKLEDVYMLSYDAILDFETVSEIM-KSGYSRIPVYED 85
KD + G EL V +MT++ ++ + + + +++ + + +PV +D
Sbjct: 65 RKDLLRASIGQQELTSVPVHIIMTRMPNITVCRREDYV--MDIAKHLIEKQIDALPVIKD 122
Query: 86 RRTN-----IVTMFYIKDL--ALVDPDDNT 108
VT ++ LV +N
Sbjct: 123 TDKGFEVIGRVT---KTNMTKILVSLSENE 149
Score = 29.2 bits (66), Expect = 1.3
Identities = 21/160 (13%), Positives = 51/160 (31%), Gaps = 20/160 (12%)
Query: 39 ELRRKIVGDVMTKLEDVYMLSYDAILDFETVSEIM-KSGYSRIPVYEDRRTNIVTMFYIK 97
+L++ V D + V + ++ D M + V DR +V + K
Sbjct: 13 KLKKLQVKDFQSI--PVVIHENVSVYD---AICTMFLEDVGTLFVV-DRDAVLVGVLSRK 66
Query: 98 DLALVDPDDNTPLKTLCQFY---QNSCYFVFEDTTL-DVLLKQFKEGIKGHMAFVHRVNN 153
DL + + + D+ ++ I + +
Sbjct: 67 DLLRASIGQQELTSVPVHIIMTRMPNITVCRREDYVMDIAKHLIEKQI-DALPVI----- 120
Query: 154 EGEGDPFYETVGLITLEDVIEELIQAEIMDETDVWTDNQH 193
+ D +E +G +T ++ + L+ + + + + H
Sbjct: 121 -KDTDKGFEVIGRVTKTNMTKILV--SLSENEILLQHHHH 157
>2nyc_A Nuclear protein SNF4; bateman2 domain, AMP kinase, protein binding;
1.90A {Saccharomyces cerevisiae} SCOP: d.37.1.1 PDB:
2nye_A
Length = 144
Score = 32.5 bits (75), Expect = 0.095
Identities = 20/154 (12%), Positives = 54/154 (35%), Gaps = 29/154 (18%)
Query: 40 LRRKI--VGDVMTKLEDVYMLSYDAILDFETVSEIM-KSGYSRIPVYEDRRT--NIVTMF 94
L+ I + + ++ + V +++ + S +P+ ++ N+ +
Sbjct: 6 LKIPIGDLNIITQD--NMKSCQMTTPV--IDVIQMLTQGRVSSVPIIDENGYLINVYEAY 61
Query: 95 YIKDLALVDPDDNTPLK-----TLCQFYQNSCYFVFEDTTLDVLLKQFKEGIKGHMAFVH 149
+ L ++ L Y ++ L ++ ++ VH
Sbjct: 62 DVLGLIKGGIYNDLSLSVGEALMRRSDDFEGVYTCTKNDKLSTIMDNIRK--AR----VH 115
Query: 150 R---VNNEGEGDPFYETVGLITLEDVIEELIQAE 180
R V++ G VG++TL D+++ ++
Sbjct: 116 RFFVVDDVGR------LVGVLTLSDILKYILLGS 143
>1o7f_A CAMP-dependent RAP1 guanine-nucleotide exchange factor; EPAC2,
CAMP-GEF2, campb binding doamin, regulation; 2.5A {Mus
musculus} SCOP: a.4.5.31 b.82.3.2 b.82.3.2
Length = 469
Score = 33.4 bits (75), Expect = 0.12
Identities = 10/38 (26%), Positives = 17/38 (44%)
Query: 270 DYFVLILEGRAEVVVGKENLVYEAGPFSYFGCQALTQN 307
+ +IL+G VV+ + +V FG AL +
Sbjct: 380 TSWYIILKGSVNVVIYGKGVVCTLHEGDDFGKLALVND 417
>3shr_A CGMP-dependent protein kinase 1; cyclic nucleotide binding domains,
cyclic nucleotide protein transferase, PKG; HET: CMP;
2.50A {Bos taurus}
Length = 299
Score = 33.0 bits (75), Expect = 0.13
Identities = 17/99 (17%), Positives = 32/99 (32%), Gaps = 13/99 (13%)
Query: 213 EKSEAQRIHISPQLNLATFQFLSSNFYVGSL----LDRITQKGTSQQKPTFKSLKKRNKP 268
KSE + I + + N ++ +L + I + + K
Sbjct: 28 TKSERSKDLIK--------EAILDNDFMKNLELSQIQEIVDCMYPVEYGKDSCIIKEGDV 79
Query: 269 VDYFVLILEGRAEVVVGKENLVYEAGPFSYFGCQALTQN 307
++ +G+ EV + GP FG A+ N
Sbjct: 80 GSLVYVMEDGKVEVTKE-GVKLCTMGPGKVFGELAILYN 117
Score = 27.6 bits (61), Expect = 7.3
Identities = 10/49 (20%), Positives = 18/49 (36%), Gaps = 5/49 (10%)
Query: 264 KRNKPVDYFVLILEGRAEVVV-----GKENLVYEAGPFSYFGCQALTQN 307
++ D F +I +G+ V + G +FG +AL
Sbjct: 193 RQGARGDTFFIISKGKVNVTREDSPNEDPVFLRTLGKGDWFGEKALQGE 241
>2pfi_A Chloride channel protein CLC-Ka; cystathionine beta synthetase
(CBS) domains containing protein, transport protein;
1.60A {Homo sapiens}
Length = 164
Score = 32.3 bits (73), Expect = 0.16
Identities = 23/149 (15%), Positives = 45/149 (30%), Gaps = 27/149 (18%)
Query: 45 VGDVMTKLEDVYMLSYDAILDFETVSEIMKS-GYSRIPVYEDRRTN----IVTMFYIKDL 99
V M + L+ D L E V +++ S + P+ E + IV +
Sbjct: 15 VEHFMNH--SITTLAKDTPL--EEVVKVVTSTDVTEYPLVESTESQILVGIVQRAQLVQA 70
Query: 100 ALVDPDDN--------TPLKTLCQFYQNSCYFVFEDTTLDVLLKQFKEGIKGHMAFVHRV 151
+P + + +F +TTL FK + V
Sbjct: 71 LQAEPPSRAPGHQQCLQDILARGCPTEPVTLTLFSETTLHQAQNLFKLLNLQSLF----V 126
Query: 152 NNEGEGDPFYETVGLITLEDVIEELIQAE 180
+ G VG ++ ++ + +
Sbjct: 127 TSRGR------AVGCVSWVEMKKAISNLT 149
>3ctu_A CBS domain protein; structural genomics, PSI-2, protein structure
initiative, midwest center for structural genomics,
MCSG; 2.81A {Streptococcus pneumoniae TIGR4} PDB:
3k6e_A
Length = 156
Score = 31.6 bits (72), Expect = 0.22
Identities = 6/45 (13%), Positives = 19/45 (42%), Gaps = 3/45 (6%)
Query: 39 ELRRKIVGDVMTKLEDVYMLSYDAILDFETVSEIM-KSGYSRIPV 82
+T +++ +L + + + ++ + Y+R+PV
Sbjct: 11 TFLLGQEETFLTPAKNLAVLIDTH--NADHATLLLSQMTYTRVPV 53
>2v8q_E 5'-AMP-activated protein kinase subunit gamma-1; phosphorylation,
nucleotide-binding, serine/threonine-protei kinase,
magnesium, CBS domain; HET: AMP; 2.10A {Rattus
norvegicus} SCOP: d.37.1.1 d.37.1.1 PDB: 2v92_E* 2v9j_E*
2y8l_E* 2y8q_E* 2y94_E* 2ya3_E*
Length = 330
Score = 32.2 bits (73), Expect = 0.23
Identities = 24/151 (15%), Positives = 60/151 (39%), Gaps = 26/151 (17%)
Query: 39 ELRRKIVGDVMTK-LEDVYMLSYDAILDFETVSEIMKSGYSRIPVYED--RRTNIVTMFY 95
E K + ++ ++ M+ + + + ++ S +PV ++ R +I + F
Sbjct: 186 EFMSKSLEELQIGTYANIAMVRTTTPV-YVALGIFVQHRVSALPVVDEKGRVVDIYSKFD 244
Query: 96 IKDLALVDPDDNTPLKTLCQFYQNS------CYFVFEDTTLDVLLKQFKEGIKGHMAFVH 149
+ +LA + N ++ + Q+ + TL+ ++ + E VH
Sbjct: 245 VINLA-AEKTYNNLDVSVTKALQHRSHYFEGVLKCYLHETLEAIINRLVE--AE----VH 297
Query: 150 R---VNNEGEGDPFYETVGLITLEDVIEELI 177
R V+ G+++L D+++ L+
Sbjct: 298 RLVVVDEHDV------VKGIVSLSDILQALV 322
Score = 29.1 bits (65), Expect = 2.3
Identities = 7/60 (11%), Positives = 24/60 (40%), Gaps = 1/60 (1%)
Query: 40 LRRKIVGDVMTKLEDVYMLSYDAILDFETVSEIMKSGYSRIPVYEDRRTNIVTMFYIKDL 99
++ D++ + + + + ++ +G P+++ ++ + V M I D
Sbjct: 32 MKSHRCYDLIPTSSKLVVFDTSLQVK-KAFFALVTNGVRAAPLWDSKKQSFVGMLTITDF 90
>3t4n_C Nuclear protein SNF4; CBS domain, nucleotide binding, cytosol,
protein binding; HET: ADP; 2.30A {Saccharomyces
cerevisiae} PDB: 3tdh_C* 3te5_C* 2qlv_C
Length = 323
Score = 32.2 bits (73), Expect = 0.28
Identities = 20/153 (13%), Positives = 56/153 (36%), Gaps = 27/153 (17%)
Query: 40 LRRKIVGDVMTKLEDVYMLSYDAILDFETVSEIM-KSGYSRIPVYEDRRTNIVTMFYIKD 98
L+ I + +++ + V +++ + S +P+ D ++ ++ D
Sbjct: 185 LKIPIGDLNIITQDNMKSCQMTTPV--IDVIQMLTQGRVSSVPI-IDENGYLINVYEAYD 241
Query: 99 LALVDPDDNTPL--KTLCQFYQNS------CYFVFEDTTLDVLLKQFKEGIKGHMAFVHR 150
+ + ++ + Y ++ L ++ ++ A VHR
Sbjct: 242 VLGLIKGGIYNDLSLSVGEALMRRSDDFEGVYTCTKNDKLSTIMDNIRK------ARVHR 295
Query: 151 ---VNNEGEGDPFYETVGLITLEDVIEELIQAE 180
V++ G VG++TL D+++ ++
Sbjct: 296 FFVVDDVGR------LVGVLTLSDILKYILLGS 322
>2ozj_A Cupin 2, conserved barrel; cupin superfamily protein, struct
genomics, joint center for structural genomics, JCSG;
HET: MSE; 1.60A {Desulfitobacterium hafniense}
Length = 114
Score = 30.1 bits (68), Expect = 0.39
Identities = 6/27 (22%), Positives = 10/27 (37%)
Query: 268 PVDYFVLILEGRAEVVVGKENLVYEAG 294
D LIL+G A + + +
Sbjct: 57 FGDTLYLILQGEAVITFDDQKIDLVPE 83
>3fjs_A Uncharacterized protein with RMLC-like cupin fold; structural
genomics, joint center for structural genomics, JCSG;
HET: MSE; 1.90A {Ralstonia eutropha JMP134}
Length = 114
Score = 30.1 bits (68), Expect = 0.41
Identities = 6/27 (22%), Positives = 8/27 (29%)
Query: 268 PVDYFVLILEGRAEVVVGKENLVYEAG 294
+ LEG E+ V G
Sbjct: 55 AGPSTIQCLEGEVEIGVDGAQRRLHQG 81
>3sl7_A CBS domain-containing protein CBSX2; CBS-PAIR protein, redox
regulator, plant CBS domain, thiored chloroplast,
membrane protein; 1.91A {Arabidopsis thaliana}
Length = 180
Score = 30.5 bits (69), Expect = 0.59
Identities = 8/42 (19%), Positives = 20/42 (47%), Gaps = 9/42 (21%)
Query: 45 VGDVMTKLEDVYMLSYDAILDFETVSEIMK----SGYSRIPV 82
VGD MT ++++++ +V + ++ + +PV
Sbjct: 6 VGDFMTPRQNLHVVKPST-----SVDDALELLVEKKVTGLPV 42
Score = 28.5 bits (64), Expect = 2.5
Identities = 10/45 (22%), Positives = 23/45 (51%), Gaps = 5/45 (11%)
Query: 39 ELRRKIVGDVMTKLEDVYMLSYDAILDFETVSEIM-KSGYSRIPV 82
+ K+VGD+MT ++ + E + ++ ++ + R+PV
Sbjct: 94 KTYGKVVGDLMTP--SPLVVRDST--NLEDAARLLLETKFRRLPV 134
>2j9l_A Chloride channel protein 5; ION channel, ION transport,
voltage-gated; HET: ATP; 2.30A {Homo sapiens} SCOP:
d.37.1.1 PDB: 2ja3_A*
Length = 185
Score = 30.6 bits (69), Expect = 0.60
Identities = 30/180 (16%), Positives = 62/180 (34%), Gaps = 47/180 (26%)
Query: 45 VGDVMTKLEDVYMLSYDAILDFETVSEIMK----SGYSRIPVYEDRRTNIV--------- 91
DVM + +L+ D TV ++ + YS PV R + +
Sbjct: 13 AMDVMKPRRNDPLLTV-LTQDSMTVEDVETIISETTYSGFPVVVSRESQRLVGFVLRRDL 71
Query: 92 -----------------TMFYIKDLALVDPDDNTPLKTLCQFYQNSCYFVFEDTTLDVLL 134
++ Y + + P P L S + V + T +++++
Sbjct: 72 IISIENARKKQDGVVSTSIIYFTEHSPPLPPYTPPTLKLRNILDLSPFTVTDLTPMEIVV 131
Query: 135 KQFKE-GIKGHMAFVH--RVNNEGEGDPFYETVGLITLEDVIEELIQAEIMDETDVWTDN 191
F++ G++ H R+ +G+IT +DV++ + Q D + +
Sbjct: 132 DIFRKLGLR-QCLVTHNGRL------------LGIITKKDVLKHIAQMANQDPDSILFNE 178
>3kpb_A Uncharacterized protein MJ0100; CBS domain, S-adenosylmethionine,
conformational change, unknown function; HET: SAM; 1.60A
{Methanocaldococcus jannaschii} PDB: 3kpd_A* 3kpc_A*
Length = 122
Score = 29.8 bits (68), Expect = 0.64
Identities = 20/147 (13%), Positives = 49/147 (33%), Gaps = 50/147 (34%)
Query: 44 IVGDVMTKLEDVYMLSYDAILDFETVSEIM-KSGYSRIPVYEDRRT--NIVTMFYIKDLA 100
+V D+++K + + ++I+ K + +P+ ++ I+T D+A
Sbjct: 2 LVKDILSK--PPITAHSNISI--MEAAKILIKHNINHLPIVDEHGKLVGIIT---SWDIA 54
Query: 101 LVDPDDNTPLK--------TLCQFYQNSCYFVFEDTTLDVLLKQFKEGIKGHMAFVHR-- 150
+ ++ T ED +D + + + +
Sbjct: 55 KALAQNKKTIEEIMTRNVIT-----------AHEDEPVDHVAIKMSK---------YNIS 94
Query: 151 ----VNNEGEGDPFYETVGLITLEDVI 173
V++ VG++T ED+
Sbjct: 95 GVPVVDDYRR------VVGIVTSEDIS 115
>2z69_A DNR protein; beta barrel, dimerization helix, transcription
regulator; 2.10A {Pseudomonas aeruginosa}
Length = 154
Score = 30.0 bits (68), Expect = 0.76
Identities = 6/41 (14%), Positives = 15/41 (36%), Gaps = 4/41 (9%)
Query: 268 PVDYFVLILEGRAEVVV----GKENLVYEAGPFSYFGCQAL 304
P F ++ G ++ G+E ++ + F +
Sbjct: 52 PAHAFYYLISGCVKIYRLTPEGQEKILEVTNERNTFAEAMM 92
>1yhf_A Hypothetical protein SPY1581; structural genomics, conserved
hypothetical protein, PSI, PR structure initiative;
2.00A {Streptococcus pyogenes} SCOP: b.82.1.9
Length = 115
Score = 29.3 bits (66), Expect = 0.83
Identities = 10/27 (37%), Positives = 13/27 (48%)
Query: 268 PVDYFVLILEGRAEVVVGKENLVYEAG 294
P D V IL G AE+ + +E G
Sbjct: 59 PGDAMVTILSGLAEITIDQETYRVAEG 85
>2pqq_A Putative transcriptional regulator; APC7345, streptomyces
coelicolor structural genomics, PSI-2, protein structure
initiative; 2.00A {Streptomyces coelicolor A3}
Length = 149
Score = 29.5 bits (67), Expect = 0.84
Identities = 11/41 (26%), Positives = 20/41 (48%), Gaps = 4/41 (9%)
Query: 268 PVDYFVLILEGRAEVVV----GKENLVYEAGPFSYFGCQAL 304
P D ++ EG+ ++ G+EN++ GP G +L
Sbjct: 45 PGDRLYVVTEGKVKLHRTSPDGRENMLAVVGPSELIGELSL 85
>3fhm_A Uncharacterized protein ATU1752; CBS domain, prokaryotic, bound
nucleotide, AMP, NADH, struct genomics, PSI-2; HET: AMP
NAI; 2.70A {Agrobacterium tumefaciens str}
Length = 165
Score = 30.0 bits (68), Expect = 0.84
Identities = 19/77 (24%), Positives = 34/77 (44%), Gaps = 10/77 (12%)
Query: 27 EKDEVN-IISGALELRRKIVGDVMTKLEDVYMLSYDAILDFETVSEIM-KSGYSRIPVYE 84
E+D V + ++ V MTK +V +++ D + EIM + +PV E
Sbjct: 76 ERDLVKAVAGQGAASLQQSVSVAMTK--NVVRCQHNSTTD--QLMEIMTGGRFRHVPVEE 131
Query: 85 DRR-TNIVTMFYIKDLA 100
+ R I++ I D+
Sbjct: 132 NGRLAGIIS---IGDVV 145
>2uv4_A 5'-AMP-activated protein kinase subunit gamma-1; transferase, CBS
domain, lipid synthesis, fatty acid biosynthesis; HET:
AMP; 1.33A {Homo sapiens} PDB: 2uv5_A* 2uv6_A* 2uv7_A*
Length = 152
Score = 29.5 bits (67), Expect = 0.94
Identities = 23/151 (15%), Positives = 55/151 (36%), Gaps = 29/151 (19%)
Query: 40 LRRKI--VGDVMTKLEDVYMLSYDAILDFETVSEIM-KSGYSRIPVYEDRRT--NIVTMF 94
+ + + + ++ M+ + I + S +PV +++ +I + F
Sbjct: 16 MSKSLEELQIGTYA--NIAMVRTTTPV--YVALGIFVQHRVSALPVVDEKGRVVDIYSKF 71
Query: 95 YIKDLALVDPDDNTPLK-----TLCQFYQNSCYFVFEDTTLDVLLKQFKEGIKGHMAFVH 149
+ +LA +N + Y + TL+ ++ + E A VH
Sbjct: 72 DVINLAAEKTYNNLDVSVTKALQHRSHYFEGVLKCYLHETLETIINRLVE------AEVH 125
Query: 150 R---VNNEGEGDPFYETVGLITLEDVIEELI 177
R V+ G+++L D+++ L+
Sbjct: 126 RLVVVDENDV------VKGIVSLSDILQALV 150
>2qrd_G Protein C1556.08C; AMPK, ADP, ATP-binding, kinase,
nucleotide-binding, serine/T protein kinase,
transferase, CBS domain; HET: ADP ATP; 2.41A
{Schizosaccharomyces pombe} PDB: 2qrc_G* 2qr1_G* 2qre_G*
2oox_G* 2ooy_G*
Length = 334
Score = 30.2 bits (68), Expect = 1.1
Identities = 20/136 (14%), Positives = 43/136 (31%), Gaps = 25/136 (18%)
Query: 53 EDVYMLSYDAILDFETVSEIMKS-GYSRIPV--YEDRRTNIVTMFYIKDLALVDPDDNTP 109
++ S + + V +++ S +P+ E N+ + L N
Sbjct: 193 SNLATASMETKV--YDVIKMLAEKNISAVPIVNSEGTLLNVYESVDVMHLIQDGDYSNLD 250
Query: 110 LK-----TLCQFYQNSCYFVFEDTTLDVLLKQFKEGIKGHMAFVHR---VNNEGEGDPFY 161
L + + LD + K + VHR V+ +
Sbjct: 251 LSVGEALLKRPANFDGVHTCRATDRLDGIFDAIKH------SRVHRLFVVDENLK----- 299
Query: 162 ETVGLITLEDVIEELI 177
G+++L D++ +I
Sbjct: 300 -LEGILSLADILNYII 314
>2o16_A Acetoin utilization protein ACUB, putative; structural genomics,
unknown function, PSI-2, protein struct initiative;
1.90A {Vibrio cholerae} SCOP: d.37.1.1
Length = 160
Score = 29.2 bits (66), Expect = 1.3
Identities = 15/76 (19%), Positives = 23/76 (30%), Gaps = 9/76 (11%)
Query: 26 LEKDEVNIISGALELRRKIVGDVMTKLEDVYMLSYDAILDFETVSEIM-KSGYSRIPVYE 84
E G + +VM DV ++ A L + + M K +PV
Sbjct: 61 QESSLQRSAQGDSLAFETPLFEVMHT--DVTSVAPQAGL--KESAIYMQKHKIGCLPVVA 116
Query: 85 DRR-TNIVTMFYIKDL 99
I+T D
Sbjct: 117 KDVLVGIIT---DSDF 129
>2b8m_A Hypothetical protein MJ0764; structural genomics, joint center for
structural genomics, J protein structure initiative,
PSI-2; 1.70A {Methanocaldococcus jannaschii} SCOP:
b.82.1.18
Length = 117
Score = 28.8 bits (64), Expect = 1.4
Identities = 6/35 (17%), Positives = 15/35 (42%), Gaps = 1/35 (2%)
Query: 261 SLKKRNKPVDYFVLILEGRAEVVVG-KENLVYEAG 294
+ K ++I++G + + +E Y+ G
Sbjct: 39 QMPKHYSNSYVHLIIIKGEMTLTLEDQEPHNYKEG 73
>2p9m_A Hypothetical protein MJ0922; structural genomics, collaboratory for
structural genomics, secsg; 2.59A {Methanocaldococcus
jannaschii dsm 2661ORGANISM_TAXID}
Length = 138
Score = 28.4 bits (64), Expect = 1.9
Identities = 34/152 (22%), Positives = 59/152 (38%), Gaps = 25/152 (16%)
Query: 39 ELRRKIVGDVMTKLEDVYMLSYDAILDFETVSEIM-KSGYSRIPVYEDRRT--NIVTMFY 95
L+ V DVMTK +V E M K S +PV +D IVT
Sbjct: 4 TLKNIKVKDVMTK--NVITAKRHE--GVVEAFEKMLKYKISSLPVIDDENKVIGIVT--- 56
Query: 96 IKDLALVDPDDNTPLKT-LCQFYQNSCYFVFEDTTL-DVLLKQFKEGIKGHMAFVHR--- 150
D+ D L+T + + ED ++ + + K G K + +++
Sbjct: 57 TTDIGYNLIRDKYTLETTIGDVMTKDVITIHEDASILEAIKKMDISGKKEEI--INQLPV 114
Query: 151 VNNEGEGDPFYETVGLITLEDVIEELIQAEIM 182
V+ + VG+I+ D+I + ++I+
Sbjct: 115 VDKNNK------LVGIISDGDIIRTI--SKII 138
>3rns_A Cupin 2 conserved barrel domain protein; structural genomics,
PSI-biology, midwest center for structu genomics, MCSG,
unknown function; HET: MSE; 2.07A {Leptotrichia
buccalis}
Length = 227
Score = 29.1 bits (65), Expect = 2.1
Identities = 7/27 (25%), Positives = 13/27 (48%)
Query: 268 PVDYFVLILEGRAEVVVGKENLVYEAG 294
P D V +L+G + V + + + G
Sbjct: 172 PGDALVTVLDGEGKYYVDGKPFIVKKG 198
Score = 27.2 bits (60), Expect = 9.6
Identities = 3/27 (11%), Positives = 7/27 (25%)
Query: 268 PVDYFVLILEGRAEVVVGKENLVYEAG 294
+ + G E+ + G
Sbjct: 56 LGNRYYYCFNGNGEIFIENNKKTISNG 82
>4ava_A Lysine acetyltransferase; allosteric regulation, domain coupling;
HET: ACO; 1.70A {Mycobacterium tuberculosis} PDB:
4avb_A* 4avc_A*
Length = 333
Score = 29.2 bits (65), Expect = 2.2
Identities = 13/40 (32%), Positives = 16/40 (40%), Gaps = 3/40 (7%)
Query: 268 PVDYFVLILEGRAEVVV---GKENLVYEAGPFSYFGCQAL 304
P F+LI G AEV ++ A P G AL
Sbjct: 53 PAVSFLLISSGSAEVSHVGDDGVAIIARALPGMIVGEIAL 92
>3gyd_A CNMP-BD protein, cyclic nucleotide-binding domain; nucleotide
binding protein, structural genomics; HET: MSE CMP;
1.79A {Methylobacillus flagellatus KT}
Length = 187
Score = 28.6 bits (64), Expect = 2.7
Identities = 10/37 (27%), Positives = 15/37 (40%), Gaps = 4/37 (10%)
Query: 268 PVDYFVLILEGRAEVVV----GKENLVYEAGPFSYFG 300
P DY +LIL G V+ + + G + G
Sbjct: 79 PGDYLLLILTGEVNVIKDIPNKGIQTIAKVGAGAIIG 115
>3idb_B CAMP-dependent protein kinase type II-beta regulatory subunit,
CAMP-dependent protein kinase catalytic subunit alpha;
PKA, SPR, affinity; HET: TPO SEP ANP; 1.62A {Rattus
norvegicus} PDB: 3idc_B*
Length = 161
Score = 28.5 bits (64), Expect = 2.7
Identities = 13/95 (13%), Positives = 28/95 (29%), Gaps = 15/95 (15%)
Query: 213 EKSEAQRIHISPQLNLATFQFLSSNFYVGSL----LDRITQKGTSQQKPTFKSLKKRNKP 268
K++ QR + + +L + ++ + + + +
Sbjct: 27 PKTDDQRNRLQ--------EACKDILLFKNLDPEQMSQVLDAMFEKLVKEGEHVIDQGDD 78
Query: 269 VDYFVLILEGRAEVVV---GKENLVYEAGPFSYFG 300
D F +I G ++ V G V FG
Sbjct: 79 GDNFYVIDRGTFDIYVKCDGVGRCVGNYDNRGSFG 113
>1o50_A CBS domain-containing predicted protein TM0935; CBS-domain PAIR
fold, structural genomics, joint center for structural
genomics, JCSG; 1.87A {Thermotoga maritima} SCOP:
d.37.1.1
Length = 157
Score = 28.0 bits (63), Expect = 3.0
Identities = 5/44 (11%), Positives = 17/44 (38%), Gaps = 5/44 (11%)
Query: 40 LRRKIVGDVMTKLEDVYMLSYDAILDFETVSEIM-KSGYSRIPV 82
++ K V +++ ++ D E + + + + +R
Sbjct: 13 MKVKDVCKLISL--KPTVVEEDT--PIEEIVDRILEDPVTRTVY 52
>1zyb_A Transcription regulator, CRP family; NP_813211.1, structural
genomics, joint center for structura genomics, JCSG;
2.15A {Bacteroides thetaiotaomicron} SCOP: a.4.5.4
b.82.3.2
Length = 232
Score = 28.4 bits (64), Expect = 3.5
Identities = 7/55 (12%), Positives = 13/55 (23%), Gaps = 10/55 (18%)
Query: 256 KPTFKSLKK------RNKPVDYFVLILEGRAEVVV----GKENLVYEAGPFSYFG 300
K F K P +L+G +V ++ +
Sbjct: 42 KLHFIKHKAGETIIKSGNPCTQLCFLLKGEISIVTNAKENIYTVIEQIEAPYLIE 96
>2yzq_A Putative uncharacterized protein PH1780;
sheet/helix/sheet/sheet/helix, structural genomics,
unknown function, NPPSFA; HET: SAM; 1.63A {Pyrococcus
horikoshii} SCOP: d.37.1.1 d.37.1.1
Length = 282
Score = 28.6 bits (64), Expect = 3.6
Identities = 26/145 (17%), Positives = 48/145 (33%), Gaps = 36/145 (24%)
Query: 45 VGDVMTKLEDVYMLSYDAILDFETVSEIM-KSGYSRIPVYEDRRT--NIVTMFYIKDLAL 101
V +MT+ + ++ A E+ K PV I+++ K + +
Sbjct: 3 VKTIMTQ--NPVTITLPATR--NYALELFKKYKVRSFPVVNKEGKLVGIISV---KRILV 55
Query: 102 VDPDDNTPLKTLCQFYQNSCYFVFEDTTLDVLLKQFKEGIKGHMAFVHR------VNNEG 155
D L L + V E+ TL K E + V+++G
Sbjct: 56 NP--DEEQLAML---VKRDVPVVKENDTLKKAAKLMLE---------YDYRRVVVVDSKG 101
Query: 156 EGDPFYETVGLITLEDVIEELIQAE 180
+ VG++T+ D+I
Sbjct: 102 K------PVGILTVGDIIRRYFAKS 120
>1wfo_A Sidekick 2; FN3, cell adhesion, structural genomics, riken
structural genomics/proteomics initiative, RSGI; NMR
{Homo sapiens} SCOP: b.1.2.1
Length = 130
Score = 27.4 bits (61), Expect = 4.2
Identities = 7/22 (31%), Positives = 11/22 (50%)
Query: 151 VNNEGEGDPFYETVGLITLEDV 172
G+G P + + TL+DV
Sbjct: 6 SGRIGDGSPSHPPILERTLDDV 27
>4frf_A Inositol polyphosphate multikinase alpha; ATP grAsp, inositol
phosphate kinase, transferase; 2.90A {Arabidopsis
thaliana}
Length = 275
Score = 28.2 bits (62), Expect = 4.5
Identities = 13/66 (19%), Positives = 26/66 (39%), Gaps = 1/66 (1%)
Query: 115 QFYQNSCYFVFEDTTLDVLLKQFKEGIKGHMAFVHRVNNEGEGDPFYETVGLITLEDVIE 174
F S V+E+ ++ + F H ++ G D + GL + + I
Sbjct: 205 HFNSCSILMVYENESILKGNDDDARPQVKLVDFAHVLDGNGVIDHNF-LGGLCSFINFIR 263
Query: 175 ELIQAE 180
E++Q+
Sbjct: 264 EILQSP 269
>3d0s_A Transcriptional regulatory protein; CAMP receptor protein (CRP),
dimer, inactive(APO, unliganded allostery, DNA binding,
cyclic AMP; 2.00A {Mycobacterium tuberculosis} PDB:
3i54_A* 3i59_A* 3mzh_A* 3h3u_A* 3r6s_A*
Length = 227
Score = 28.0 bits (63), Expect = 4.8
Identities = 12/41 (29%), Positives = 21/41 (51%), Gaps = 4/41 (9%)
Query: 268 PVDYFVLILEGRAEVVV----GKENLVYEAGPFSYFGCQAL 304
P D +I+ G+ ++ G+ENL+ GP FG ++
Sbjct: 46 PGDRLYIIISGKVKIGRRAPDGRENLLTIMGPSDMFGELSI 86
>2d93_A RAP guanine nucleotide exchange factor 6; CNMP_binding domain, PDZ
domain containing guanine nucleotide exchange factor 2,
PDZ-GEF2, RA-GEF-2; NMR {Homo sapiens}
Length = 134
Score = 27.3 bits (61), Expect = 5.1
Identities = 8/45 (17%), Positives = 16/45 (35%), Gaps = 3/45 (6%)
Query: 264 KRNKPVDYFVLILEGRAEVVVGKENL-VYEAGPFSYFGCQALTQN 307
+ + +D + +IL G E+ + G + FG
Sbjct: 53 EDGQELDSWYVILNGTVEISHPDGKVENLFMG--NSFGITPTLDK 95
>1pvm_A Conserved hypothetical protein TA0289; structural genomics, CBS
domain, PSI, protein structure initiative; 1.50A
{Thermoplasma acidophilum dsm 1728} SCOP: d.37.1.1
g.41.13.1 PDB: 2qh1_A
Length = 184
Score = 27.7 bits (62), Expect = 5.6
Identities = 17/71 (23%), Positives = 29/71 (40%), Gaps = 10/71 (14%)
Query: 33 IISGALELRRKIVGDVMTKLEDVYMLSYDAILDFETVSEIM-KSGYSRIPVYED--RRTN 89
I + + VM K + + D D + V+ + ++G R V +D R
Sbjct: 65 FIPRNKKPDEVPIRLVMRK--PIPKVKSDY--DVKDVAAYLSENGLERCAVVDDPGRVVG 120
Query: 90 IVTMFYIKDLA 100
IVT + DL+
Sbjct: 121 IVT---LTDLS 128
Score = 27.0 bits (60), Expect = 8.3
Identities = 27/153 (17%), Positives = 53/153 (34%), Gaps = 35/153 (22%)
Query: 45 VGDVMTKLEDVYMLSYDAILDFETVSE---IMKS-GYSRIPVYEDRRT--NIVTM--FYI 96
V +M + ++++ TV + IM + V +D +++
Sbjct: 11 VEKIMNS--NFKTVNWNT-----TVFDAVKIMNENHLYGLVVKDDNGNDVGLLSERSIIK 63
Query: 97 KDLALVDPDDNTPLKTLCQFYQNSCYFVFEDTTL-DVLLKQFKEGIKGHMAFVHR---VN 152
+ + D P++ + V D + DV + G+ R V+
Sbjct: 64 RFIPRNKKPDEVPIR---LVMRKPIPKVKSDYDVKDVAAYLSENGL-------ERCAVVD 113
Query: 153 NEGEGDPFYETVGLITLEDVIEELIQAEIMDET 185
+ G VG++TL D+ L +A I D
Sbjct: 114 DPGR------VVGIVTLTDLSRYLSRASITDIL 140
>4ev0_A Transcription regulator, CRP family; CAMP binding, winged
helix-turn-helix motif, DNA binding, transcription
activator; HET: CMP; 2.40A {Thermus thermophilus}
Length = 216
Score = 27.6 bits (62), Expect = 5.7
Identities = 9/41 (21%), Positives = 15/41 (36%), Gaps = 4/41 (9%)
Query: 268 PVDYFVLILEGRAEVVV----GKENLVYEAGPFSYFGCQAL 304
L+ G+ + G+E + GP FG +L
Sbjct: 39 LGQALYLVASGKVRLFRTHLGGQERTLALLGPGELFGEMSL 79
>3bzc_A TEX; helix-turn-helix, helix-hairpin-helix, S1 domain, YQGF domain,
transcription, RNA binding protein; 2.27A {Pseudomonas
aeruginosa} SCOP: a.60.2.6 a.60.2.6 a.294.1.1 b.40.4.5
c.55.3.13 PDB: 3bzk_A 2oce_A
Length = 785
Score = 27.9 bits (63), Expect = 7.1
Identities = 8/15 (53%), Positives = 12/15 (80%)
Query: 162 ETVGLITLEDVIEEL 176
ET GL T+ D+++EL
Sbjct: 612 ETFGLPTVTDILKEL 626
>4din_B CAMP-dependent protein kinase type I-beta regulat subunit,
CAMP-dependent protein kinase catalytic subunit A;
isoform diversity; HET: TPO SEP ATP; 3.70A {Homo
sapiens}
Length = 381
Score = 27.8 bits (61), Expect = 7.6
Identities = 17/49 (34%), Positives = 22/49 (44%), Gaps = 5/49 (10%)
Query: 264 KRNKPVDYFVLILEGRAEVVV-----GKENLVYEAGPFSYFGCQALTQN 307
+ +P D F +I EG A V+ + V GP YFG AL N
Sbjct: 284 VQGEPGDDFYIITEGTASVLQRRSPNEEYVEVGRLGPSDYFGEIALLLN 332
>3ryp_A Catabolite gene activator; CAMP receptor protein (CRP), allostery,
DNA binding cyclic A transcription regulator; HET: CMP;
1.60A {Escherichia coli} PDB: 2cgp_A* 3hif_A 1g6n_A*
3ryr_A* 1i5z_A* 1j59_A* 1lb2_A* 1run_A* 1zrc_A* 1zrd_A*
1zre_A* 1zrf_A* 2gzw_A* 2wc2_A 3iyd_G* 3n4m_A* 3qop_A*
3rdi_A* 3rou_A* 3rpq_A* ...
Length = 210
Score = 27.2 bits (61), Expect = 7.9
Identities = 8/41 (19%), Positives = 16/41 (39%), Gaps = 4/41 (9%)
Query: 268 PVDYFVLILEGRAEVVV----GKENLVYEAGPFSYFGCQAL 304
+ I++G V++ GKE ++ + G L
Sbjct: 36 KAETLYYIVKGSVAVLIKDEEGKEMILSYLNQGDFIGELGL 76
>3ht1_A REMF protein; cupin fold, Zn-binding, antibiotic biosynthesis,
resistomycin, metalloprotein, cyclase, lyase; 1.20A
{Streptomyces resistomycificus} PDB: 3ht2_A
Length = 145
Score = 26.8 bits (59), Expect = 8.0
Identities = 7/28 (25%), Positives = 14/28 (50%)
Query: 268 PVDYFVLILEGRAEVVVGKENLVYEAGP 295
++ + +LEG +V+ + E GP
Sbjct: 58 EWEHEIYVLEGSMGLVLPDQGRTEEVGP 85
>2q30_A Uncharacterized protein; double-stranded beta-helix fold,
structural genomics, joint for structural genomics,
JCSG; HET: MSE; 1.94A {Desulfovibrio desulfuricans
subsp}
Length = 110
Score = 26.3 bits (58), Expect = 8.3
Identities = 8/30 (26%), Positives = 13/30 (43%), Gaps = 1/30 (3%)
Query: 266 NKPVDYFVLILEGRAEVVV-GKENLVYEAG 294
N + +++LEG E V G + G
Sbjct: 52 NIEGELNIVVLEGEGEFVGDGDAVIPAPRG 81
>3kcc_A Catabolite gene activator; helix-turn-helix, CAMP, CAMP-binding,
DNA-binding nucleotide-binding, transcription,
transcription regulation; HET: CMP; 1.66A {Escherichia
coli}
Length = 260
Score = 27.3 bits (61), Expect = 8.7
Identities = 8/41 (19%), Positives = 16/41 (39%), Gaps = 4/41 (9%)
Query: 268 PVDYFVLILEGRAEVVV----GKENLVYEAGPFSYFGCQAL 304
+ I++G V++ GKE ++ + G L
Sbjct: 86 KAETLYYIVKGSVAVLIKDEEGKEMILSYLNQGDFIGELGL 126
>1o5l_A Transcriptional regulator, CRP family; TM1171, structural GE JCSG,
PSI, protein structure initiative, joint center for S
genomics; 2.30A {Thermotoga maritima} SCOP: b.82.3.2
Length = 213
Score = 26.8 bits (60), Expect = 9.4
Identities = 8/37 (21%), Positives = 15/37 (40%), Gaps = 4/37 (10%)
Query: 268 PVDYFVLILEGRAEVVV----GKENLVYEAGPFSYFG 300
P++ +++LEG + GK + E P
Sbjct: 39 PIEDVLILLEGTLKTEHVSENGKTLEIDEIKPVQIIA 75
>3jzl_A Putative cystathionine beta-lyase involved in ALU resistance;
putative cystathionine beta-lyase involved in aluminum
resis structural genomics; HET: LLP; 1.91A {Listeria
monocytogenes str} PDB: 3fd0_A*
Length = 409
Score = 27.4 bits (61), Expect = 9.6
Identities = 7/48 (14%), Positives = 17/48 (35%), Gaps = 8/48 (16%)
Query: 74 KSGYSRIPVYEDRRTNIVTMFYIKDLALVDPDDNTPLKTLCQFYQNSC 121
+ G PV++ RT+++ + + + Q Q +
Sbjct: 300 EFGVEADPVWDAPRTDLIQSVSFH-----NKE---KMVAFAQAIQAAS 339
>2qcs_B CAMP-dependent protein kinase type I-alpha regula subunit,
CAMP-dependent protein kinase, alpha-catalytic SU;
cyclic adenosine monophosphate; HET: SEP TPO ANP TAM;
2.20A {Bos taurus} PDB: 1rl3_A* 1rgs_A* 1ne6_A* 1ne4_A*
Length = 291
Score = 27.3 bits (60), Expect = 9.9
Identities = 18/49 (36%), Positives = 23/49 (46%), Gaps = 5/49 (10%)
Query: 264 KRNKPVDYFVLILEGRAEVVV-----GKENLVYEAGPFSYFGCQALTQN 307
+ +P D F +ILEG A V+ + V GP YFG AL N
Sbjct: 193 VQGEPGDEFFIILEGSAAVLQRRSENEEFVEVGRLGPSDYFGEIALLMN 241
>2aus_C Pseudouridine synthase; isomerase, structural protein,
isomerase-structural protein; 2.10A {Pyrococcus abyssi}
PDB: 3lwr_A 3lwo_A* 3lwq_A* 3lwp_A 3lwv_A 3hax_A*
2hvy_A* 3hay_A* 2ey4_A 2rfk_A 3mqk_A 3hjw_A* 3hjy_A
Length = 334
Score = 27.2 bits (61), Expect = 9.9
Identities = 12/41 (29%), Positives = 19/41 (46%), Gaps = 4/41 (9%)
Query: 140 GIKGHMAFVHRVNNEGEGDPFYETVGLITLEDVIEELIQAE 180
G+ HMA + R PF E L+TL D+++ +
Sbjct: 192 GVGAHMAELRRT----RSGPFKEDETLVTLHDLVDYYHFWK 228
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.319 0.134 0.382
Gapped
Lambda K H
0.267 0.0505 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 5,943,174
Number of extensions: 357026
Number of successful extensions: 998
Number of sequences better than 10.0: 1
Number of HSP's gapped: 948
Number of HSP's successfully gapped: 100
Length of query: 396
Length of database: 6,701,793
Length adjustment: 96
Effective length of query: 300
Effective length of database: 4,021,377
Effective search space: 1206413100
Effective search space used: 1206413100
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 58 (26.6 bits)