RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy4847
(396 letters)
>d2v8qe2 d.37.1.1 (E:23-181) 5'-AMP-activated protein kinase subunit
gamma-1, AMPKg {Rat (Rattus norvegicus) [TaxId: 10116]}
Length = 159
Score = 53.3 bits (127), Expect = 3e-09
Identities = 16/153 (10%), Positives = 49/153 (32%), Gaps = 25/153 (16%)
Query: 40 LRRKIVGDVMTKLEDVYMLSYDAILDFETVSEIMKSGYSRIPVYEDRRTNIVTMFYIKDL 99
++ D++ + + + + ++ +G P+++ ++ + V M I D
Sbjct: 10 MKSHRCYDLIPTSSKLVVFDTSLQVK-KAFFALVTNGVRAAPLWDSKKQSFVGMLTITDF 68
Query: 100 --ALVDPDDNTPLKTLCQFYQNSC--------------YFVFEDTTLDVLLKQFKEGIKG 143
L + ++ + + +L + K
Sbjct: 69 INILHRYYKSALVQIYELEEHKIETWREVYLQDSFKPLVCISPNASLFDAVSSLIRN-KI 127
Query: 144 HMAFVHRVNNEGEGDPFYETVGLITLEDVIEEL 176
H V ++ E T+ ++T + +++ L
Sbjct: 128 HRLPV--IDPESG-----NTLYILTHKRILKFL 153
>d2nyca1 d.37.1.1 (A:181-320) Nuclear protein SNF4 {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 140
Score = 47.9 bits (113), Expect = 2e-07
Identities = 19/147 (12%), Positives = 53/147 (36%), Gaps = 21/147 (14%)
Query: 40 LRRKI--VGDVMTKLEDVYMLSYDAILDFETVSEIMKSGYSRIPVYE--DRRTNIVTMFY 95
L+ I + + ++ + + + + + S +P+ + N+ +
Sbjct: 4 LKIPIGDLNIITQD--NMKSCQMTTPVI-DVIQMLTQGRVSSVPIIDENGYLINVYEAYD 60
Query: 96 IKDLALVDPDDNTPLKTLCQFYQN-----SCYFVFEDTTLDVLLKQFKEGIKGHMAFVHR 150
+ L ++ L + Y ++ L ++ ++ H FV
Sbjct: 61 VLGLIKGGIYNDLSLSVGEALMRRSDDFEGVYTCTKNDKLSTIMDNIRKARV-HRFFV-- 117
Query: 151 VNNEGEGDPFYETVGLITLEDVIEELI 177
V++ G VG++TL D+++ ++
Sbjct: 118 VDDVGR------LVGVLTLSDILKYIL 138
>d1vr9a3 d.37.1.1 (A:1-121) Hypothetical protein TM0892, CBS tandem
{Thermotoga maritima [TaxId: 2336]}
Length = 121
Score = 46.5 bits (109), Expect = 3e-07
Identities = 28/135 (20%), Positives = 51/135 (37%), Gaps = 18/135 (13%)
Query: 45 VGDVMTKLEDVYMLSYDAILDFETVSEIMKSGYSRIPVYEDRRTNIVTMFYIKDLALVDP 104
V +T+ D M+ A + E + + + + V DR + + +DL +D
Sbjct: 3 VKKWVTQ--DFPMVEESATVR-ECLHRMRQYQTNECIVK-DREGHFRGVVNKEDLLDLDL 58
Query: 105 DDNTPLKTLCQFYQNSCYFVFEDTTLDVLLKQFKEGIKGHMAFVHRVNNEGEGDPFYETV 164
D + +FV E+ + L F E + ++ V D
Sbjct: 59 DSSV-----FNKVSLPDFFVHEEDNITHALLLFLEHQEPYLPVV---------DEEMRLK 104
Query: 165 GLITLEDVIEELIQA 179
G ++L D +E LI+A
Sbjct: 105 GAVSLHDFLEALIEA 119
>d2ooxe1 d.37.1.1 (E:3-181) Uncharacterized protein C1556.08c
{Schizosaccharomyces pombe [TaxId: 4896]}
Length = 179
Score = 47.7 bits (112), Expect = 3e-07
Identities = 17/186 (9%), Positives = 52/186 (27%), Gaps = 30/186 (16%)
Query: 22 EFNDLEKDEVNIISGALELRRKIVGDVMTKLEDVYMLSYDAILDFETVSEIM-KSGYSRI 80
+ + +K + I +R + DV+ + + D L +T ++ +
Sbjct: 1 DVQETQKGALKEIQA--FIRSRTSYDVLPTSFRLIVF--DVTLFVKTSLSLLTLNNIVSA 56
Query: 81 PVYEDRRTNIVTMFYIKDLALV--------------------DPDDNTPLKTLCQFYQNS 120
P+++ + + D V ++
Sbjct: 57 PLWDSEANKFAGLLTMADFVNVIKYYYQSSSFPEAIAEIDKFRLLGLREVERKIGAIPPE 116
Query: 121 CYFVFEDTTLDVLLKQFKEGIKGHMAFVHRVNNEGEGDPFYETVGLITLEDVIEELIQAE 180
+V +L + + + ++ +GE V ++T +++ +
Sbjct: 117 TIYVHPMHSLMDACLAMSK-SRARRIPL--IDVDGETGSE-MIVSVLTQYRILKFI-SMN 171
Query: 181 IMDETD 186
+
Sbjct: 172 CKETAM 177
>d2yzia1 d.37.1.1 (A:4-135) Uncharacterized protein PH0107
{Pyrococcus horikoshii [TaxId: 53953]}
Length = 132
Score = 45.9 bits (108), Expect = 7e-07
Identities = 20/134 (14%), Positives = 43/134 (32%), Gaps = 13/134 (9%)
Query: 45 VGDVMTKLEDVYMLSYDAILDFETVSEIMKSGYSRIPVYEDRRTNIVTMFYIKDLALVDP 104
+ MTK + + + E +M+ + V D + + V
Sbjct: 7 IKVYMTK--KLLGVKPSTSVQ-EASRLMMEFDVGSLVVINDDGNVVGFFTKSDIIRRVIV 63
Query: 105 DDNTPLKTLCQFYQNSCYFVFEDTTLDVLLKQFKEGIKGHMAFVHRVNNEGEGDPFYETV 164
+ + + +T L +L++ E + + EG+ V
Sbjct: 64 PGLPYDIPVERIMTRNLITANVNTPLGEVLRKMAE--HRIKHIL--IEEEGK------IV 113
Query: 165 GLITLEDVIEELIQ 178
G+ TL D++E +
Sbjct: 114 GIFTLSDLLEASRR 127
>d1pvma4 d.37.1.1 (A:1-142) Hypothetical protein Ta0289 {Archaeon
Thermoplasma acidophilum [TaxId: 2303]}
Length = 142
Score = 45.7 bits (107), Expect = 1e-06
Identities = 23/153 (15%), Positives = 50/153 (32%), Gaps = 18/153 (11%)
Query: 45 VGDVMTKLEDVYMLSYDAILDFETVSEIMKSGYSRIPVYEDR-RTNIVTMFYIKDLALVD 103
V +M + ++++ + + V + ++ + V +D + +
Sbjct: 5 VEKIMNS--NFKTVNWNTTVF-DAVKIMNENHLYGLVVKDDNGNDVGLLSERSIIKRFIP 61
Query: 104 PDDNTPLKTLCQFYQNSCYFVFEDTTLDVLLKQFKEGIKGHMAFVHRVNNEGEGDPFYET 163
+ + + V D + + E V V++ G
Sbjct: 62 RNKKPDEVPIRLVMRKPIPKVKSDYDVKDVAAYLSENG-LERCAV--VDDPGR------V 112
Query: 164 VGLITLEDVIEELIQAEIMDETDVWTDNQHKTK 196
VG++TL D+ L +A I D H+TK
Sbjct: 113 VGIVTLTDLSRYLSRASITDILL-----SHRTK 140
>d2rc3a1 d.37.1.1 (A:23-149) Uncharacterized protein NE2398
{Nitrosomonas europaea [TaxId: 915]}
Length = 127
Score = 45.1 bits (106), Expect = 1e-06
Identities = 18/136 (13%), Positives = 47/136 (34%), Gaps = 12/136 (8%)
Query: 43 KIVGDVM-TKLEDVYMLSYDAILDFETVSEIMKSGYSRIPVYEDRRTNIVTMFYIKDLAL 101
K V ++ K V + D + + ++ + V +D + +
Sbjct: 2 KTVKHLLQEKGHTVVAIGPDDSVF-NAMQKMAADNIGALLVMKDEKLVGILTERDFSRKS 60
Query: 102 VDPDDNTPLKTLCQFYQNSCYFVFEDTTLDVLLKQFKEGIKGHMAFVHRVNNEGEGDPFY 161
D + + +V + T + + E H+ V ++G+
Sbjct: 61 YLLDKPVKDTQVKEIMTRQVAYVDLNNTNEDCMALITEMRVRHLP----VLDDGK----- 111
Query: 162 ETVGLITLEDVIEELI 177
+GL+++ D++++ I
Sbjct: 112 -VIGLLSIGDLVKDAI 126
>d2ef7a1 d.37.1.1 (A:1-127) Uncharacterized protein ST2348
{Sulfolobus tokodaii [TaxId: 111955]}
Length = 127
Score = 41.8 bits (97), Expect = 2e-05
Identities = 21/139 (15%), Positives = 50/139 (35%), Gaps = 14/139 (10%)
Query: 40 LRRKIVGDVMTKLEDVYMLSYDAILDFETVSEIMKSGYSRIPVYEDRRTNIVTMFYIKDL 99
+ +IV + M V ++ DA L+ + + + + V + V + +D+
Sbjct: 1 MEEEIVKEYMKT--QVISVTKDAKLN-DIAKVMTEKNIGSVIVVDGN--KPVGIITERDI 55
Query: 100 ALVDPDDNTPLKTLCQFYQNSCYFVFEDTTLDVLLKQFKEGIKGHMAFVHRVNNEGEGDP 159
+ +F S + ED+ + L ++ V V+++G
Sbjct: 56 VKAIGKGKSLETKAEEFMTASLITIREDSPITGALALMRQF-NIRHLPV--VDDKGN--- 109
Query: 160 FYETVGLITLEDVIEELIQ 178
G+I++ D+ +
Sbjct: 110 ---LKGIISIRDITRAIDD 125
>d1y5ha3 d.37.1.1 (A:2-124) Hypothetical protein Rv2626c
{Mycobacterium tuberculosis [TaxId: 1773]}
Length = 123
Score = 41.8 bits (97), Expect = 2e-05
Identities = 19/133 (14%), Positives = 41/133 (30%), Gaps = 14/133 (10%)
Query: 45 VGDVMTKLEDVYMLSYDAILDFETVSEIMKSGYSRIPVYEDRRTNIVTMFYIKDLALVDP 104
D+M V + L + + +P+ D + +
Sbjct: 3 ARDIMNA--GVTCVGEHETLT-AAAQYMREHDIGALPICGDDDRLHGMLTDRDIVIKGLA 59
Query: 105 DDNTPLKT-LCQFYQNSCYFVFEDTTLDVLLKQFKEGIKGHMAFVHRVNNEGEGDPFYET 163
P + ++S Y+V + ++ +L +E + V +E
Sbjct: 60 AGLDPNTATAGELARDSIYYVDANASIQEMLNVMEEHQVRRVP----VISEHR------L 109
Query: 164 VGLITLEDVIEEL 176
VG++T D+ L
Sbjct: 110 VGIVTEADIARHL 122
>d2v8qe1 d.37.1.1 (E:182-326) 5'-AMP-activated protein kinase
subunit gamma-1, AMPKg {Rat (Rattus norvegicus) [TaxId:
10116]}
Length = 145
Score = 42.1 bits (98), Expect = 2e-05
Identities = 18/147 (12%), Positives = 48/147 (32%), Gaps = 18/147 (12%)
Query: 39 ELRRKIVGDVM-TKLEDVYMLSYDAILDFETVSEIMKSGYSRIPVYEDRRTNIVTMFYIK 97
E K + ++ ++ M+ + + ++ S +PV +++ +
Sbjct: 5 EFMSKSLEELQIGTYANIAMVRTTTPVY-VALGIFVQHRVSALPVVDEKGRVVDIYSKFD 63
Query: 98 DLALVDPDDNTPLKTLCQFYQNSC-------YFVFEDTTLDVLLKQFKEGIKGHMAFVHR 150
+ L L + TL+ ++ + E + H V
Sbjct: 64 VINLAAEKTYNNLDVSVTKALQHRSHYFEGVLKCYLHETLEAIINRLVEA-EVHRLVV-- 120
Query: 151 VNNEGEGDPFYETVGLITLEDVIEELI 177
V+ G+++L D+++ L+
Sbjct: 121 VDEHDV------VKGIVSLSDILQALV 141
>d3ddja1 d.37.1.1 (A:136-276) Uncharacterized protein SSO3205
{Sulfolobus solfataricus [TaxId: 2287]}
Length = 141
Score = 41.2 bits (95), Expect = 4e-05
Identities = 20/148 (13%), Positives = 52/148 (35%), Gaps = 18/148 (12%)
Query: 45 VGDVMTKLEDVYMLSYDAILDFETVSEIMKSGYSRIPVYEDRRTNIVTMFYIKDLALVDP 104
V M+ V + + LD + V +++ G+ R+PV +D + + + + +
Sbjct: 4 VKVFMST--KVQTIYKEVRLD-QAVKLMLRRGFRRLPVIDDDNKVVGIVTVVNAIKQLAK 60
Query: 105 DDNTPL------KTLCQFYQNSCYFVFEDTTLDVLLKQFKEGIKGHMAFVHRVNNEGEGD 158
+ K + + + E +++ + G + + +
Sbjct: 61 AVDKLDPDYFYGKVVKDVMVTNLVTIDELASVNRAAAEMIVKRIGSLLIL---------N 111
Query: 159 PFYETVGLITLEDVIEELIQAEIMDETD 186
G+IT D++ L +M++
Sbjct: 112 KDNTIRGIITERDLLIALHHILVMEKFK 139
>d2riha1 d.37.1.1 (A:2-132) Uncharacterized protein PAE2072
{Pyrobaculum aerophilum [TaxId: 13773]}
Length = 131
Score = 40.7 bits (94), Expect = 4e-05
Identities = 20/132 (15%), Positives = 40/132 (30%), Gaps = 12/132 (9%)
Query: 45 VGDVMTKLEDVYMLSYDAILDFETVSEIMKSGYSRIPVYEDRRTNIVTMFYIKDLALVDP 104
+++ + L A + E +E+ K+ + + L
Sbjct: 3 TSELLKR--PPVSLPETATIR-EVATELAKNRVGLAVLTARDNPKRPVAVVSERDILRAV 59
Query: 105 DDNTPLKTLCQFYQNSCYFVFEDTTLDVLLKQFKEGIKGHMAFVHRVNNEGEGDPFYETV 164
L NS V + + V ++ + V VN GE V
Sbjct: 60 AQRLDLDGPAMPIANSPITVLDTDPVHVAAEKMRRH-NIRHVVV--VNKNGE------LV 110
Query: 165 GLITLEDVIEEL 176
G++++ D+ E
Sbjct: 111 GVLSIRDLCFER 122
>d1yava3 d.37.1.1 (A:13-144) Hypothetical protein YkuL {Bacillus
subtilis [TaxId: 1423]}
Length = 132
Score = 40.0 bits (92), Expect = 8e-05
Identities = 19/135 (14%), Positives = 35/135 (25%), Gaps = 13/135 (9%)
Query: 45 VGDVMTKLEDVYMLSYDAILDFETVSEIMKSGYSRIPVYEDRRTNIVTMFYIKDLALV-- 102
VG M + + V + L E ++ D + + +
Sbjct: 4 VGQFMIEADKVAHVQVGNNL--EHALLVLTKTGYTAIPVLDPSYRLHGLIGTNMIMNSIF 61
Query: 103 -DPDDNTPLKTLCQFYQNSCYFVFEDTTLDVLLKQFKEGIKGHMAFVHRVNNEGEGDPFY 161
+ + D ++K F I V N+E
Sbjct: 62 GLERIEFEKLDQITVEEVMLTDIPRLHINDPIMKGFGMVINNGFVCV--ENDEQV----- 114
Query: 162 ETVGLITLEDVIEEL 176
G+ T V++EL
Sbjct: 115 -FEGIFTRRVVLKEL 128
>d2j9la1 d.37.1.1 (A:578-746) Chloride channel protein 5, ClC-5
{Human (Homo sapiens) [TaxId: 9606]}
Length = 169
Score = 40.3 bits (93), Expect = 1e-04
Identities = 27/171 (15%), Positives = 61/171 (35%), Gaps = 43/171 (25%)
Query: 44 IVGDVMTKLEDVYMLSYDAILDFETVSEIM----KSGYSRIPVYEDRRTNIV-------- 91
+ DVM + +L+ TV ++ ++ YS PV R + +
Sbjct: 4 LAMDVMKPRRNDPLLTVLTQDS-MTVEDVETIISETTYSGFPVVVSRESQRLVGFVLRRD 62
Query: 92 ------------------TMFYIKDLALVDPDDNTPLKTLCQFYQNSCYFVFEDTTLDVL 133
++ Y + + P P L S + V + T ++++
Sbjct: 63 LIISIENARKKQDGVVSTSIIYFTEHSPPLPPYTPPTLKLRNILDLSPFTVTDLTPMEIV 122
Query: 134 LKQFKEGIKGHMAFVHRVNNEGEGDPFYETVGLITLEDVIEELIQAEIMDE 184
+ F++ V + G +G+IT +DV++ + A++ ++
Sbjct: 123 VDIFRK----LGLRQCLVTHNGR------LLGIITKKDVLKHI--AQMANQ 161
>d1pbja3 d.37.1.1 (A:2-121) Hypothetical protein MTH1622 {Archaeon
Methanobacterium thermoautotrophicum [TaxId: 145262]}
Length = 120
Score = 39.5 bits (91), Expect = 1e-04
Identities = 18/133 (13%), Positives = 48/133 (36%), Gaps = 14/133 (10%)
Query: 45 VGDVMTKLEDVYMLSYDAILDFETVSEIMKSGYSRIPVYEDRRTNIVTMFYIKDLALVDP 104
V DVM DV + A L+ + + +++ V ++ + + A+ +
Sbjct: 2 VEDVMVT--DVDTIDITASLE-DVLRNYVENAKGSSVVVKEGVRVGIVTTWDVLEAIAEG 58
Query: 105 DDNTPLKTLCQFYQNSCYFVFEDTTLDVLLKQFKEGIKGHMAFVHRVNNEGEGDPFYETV 164
DD + + + + T+ ++ + + + V + E +
Sbjct: 59 DDLAE-VKVWEVMERDLVTISPRATIKEAAEKMVKNVVWRLL----VEEDDE------II 107
Query: 165 GLITLEDVIEELI 177
G+I+ D++ +
Sbjct: 108 GVISATDILRAKM 120
>d2ooxe2 d.37.1.1 (E:182-334) Uncharacterized protein C1556.08c
{Schizosaccharomyces pombe [TaxId: 4896]}
Length = 153
Score = 39.6 bits (91), Expect = 2e-04
Identities = 14/148 (9%), Positives = 39/148 (26%), Gaps = 18/148 (12%)
Query: 45 VGDVMT-KLEDVYMLSYDAILDFETVSEIMKSGYSRIPVYEDRRTNI-------VTMFYI 96
+ + ++ S + + + + + + S +P+ T + V
Sbjct: 3 LNQMTIGTWSNLATASMETKVY-DVIKMLAEKNISAVPIVNSEGTLLNVYESVDVMHLIQ 61
Query: 97 KDLALVDPDDNTPLKTLCQFYQNSCYFVFEDTTLDVLLKQFKEGIKGHMAFVHRVNNEGE 156
+ + LD + K + V
Sbjct: 62 DGDYSNLDLSVGEALLKRPANFDGVHTCRATDRLDGIFDAIKHSRVHRLFVV-------- 113
Query: 157 GDPFYETVGLITLEDVIEELIQAEIMDE 184
D + G+++L D++ +I +
Sbjct: 114 -DENLKLEGILSLADILNYIIYDKTTTP 140
>d2d4za3 d.37.1.1 (A:527-606,A:691-770) Chloride channel protein,
CBS tandem {Marbled electric ray (Torpedo marmorata)
[TaxId: 7788]}
Length = 160
Score = 37.3 bits (85), Expect = 9e-04
Identities = 20/168 (11%), Positives = 46/168 (27%), Gaps = 40/168 (23%)
Query: 36 GALELRRKIVGDVMTKLEDVYMLSYDAILDFETVSEIMKSGYSRIPVYEDRRTNIVTMFY 95
+ VGD+M + DV ++ + + + + ++ P + TN +
Sbjct: 4 SSANKYNIQVGDIMVR--DVTSIASTSTYG-DLLHVLRQTKLKFFPFVDTPDTNTLLGSI 60
Query: 96 ---------------------------IKDLALVDPDDNTPLKTLCQFYQNSCYFVFEDT 128
+ + N + S + + E T
Sbjct: 61 DRTEVEGLLQRRISAYRRQPFEEMLTLEEIYRWEQREKNVVVNFETCRIDQSPFQLVEGT 120
Query: 129 TLDVLLKQFKEGIKGHMAFVHRVNNEGEGDPFYETVGLITLEDVIEEL 176
+L F V + G+ VG++ L ++ +
Sbjct: 121 SLQKTHTLFSLLGLDRAY----VTSMGK------LVGVVALAEIQAAI 158
>d2yzqa2 d.37.1.1 (A:1-122) Uncharacterized protein PH1780
{Pyrococcus horikoshii [TaxId: 53953]}
Length = 122
Score = 36.8 bits (84), Expect = 0.001
Identities = 23/134 (17%), Positives = 43/134 (32%), Gaps = 18/134 (13%)
Query: 45 VGDVMTKLEDVYMLSYDAILDFETVSEIMKSGYSRIPVYEDRRTNIVTMFYIKDLALVDP 104
V +MT+ + ++ A + + K PV + +
Sbjct: 3 VKTIMTQ--NPVTITLPATRN-YALELFKKYKVRSFPVVNKEGKLVGIISVK------RI 53
Query: 105 DDNTPLKTLCQFYQNSCYFVFEDTTLDVLLKQFKEGIKGHMAFVHRVNNEGEGDPFYETV 164
N + L + V E+ TL K E V V+++G+ V
Sbjct: 54 LVNPDEEQLAMLVKRDVPVVKENDTLKKAAKLMLEY-DYRRVVV--VDSKGK------PV 104
Query: 165 GLITLEDVIEELIQ 178
G++T+ D+I
Sbjct: 105 GILTVGDIIRRYFA 118
>d2o16a3 d.37.1.1 (A:20-158) Hypothetical protein VC0737 {Vibrio
cholerae [TaxId: 666]}
Length = 139
Score = 35.6 bits (81), Expect = 0.003
Identities = 24/150 (16%), Positives = 44/150 (29%), Gaps = 24/150 (16%)
Query: 45 VGDVMTKLEDVYMLSYDAILDFETVSEIMKSGYSRIPVYEDRRTNIVTMFYIKDLAL--- 101
V D+MT+ + L L+ + + +P D ++ + +DL
Sbjct: 4 VEDMMTR--HPHTLLRTHTLN-DAKHLMEALDIRHVP-IVDANKKLLGIVSQRDLLAAQE 59
Query: 102 ------VDPDDNTPLKTLCQFYQNSCYFVFEDTTLDVLLKQFKEGIKGHMAFVHRVNNEG 155
D L + V L ++ G + V +
Sbjct: 60 SSLQRSAQGDSLAFETPLFEVMHTDVTSVAPQAGLKESAIYMQKHKIGCLP----VVAKD 115
Query: 156 EGDPFYETVGLITLEDVIEELI-QAEIMDE 184
VG+IT D + I E+ +E
Sbjct: 116 V------LVGIITDSDFVTIAINLLELQEE 139
>d1o50a3 d.37.1.1 (A:1-145) Hypothetical protein TM0935 {Thermotoga
maritima [TaxId: 2336]}
Length = 145
Score = 35.0 bits (79), Expect = 0.006
Identities = 22/153 (14%), Positives = 49/153 (32%), Gaps = 26/153 (16%)
Query: 40 LRRKIVGDVMTKLEDVYMLSYDAILDFETVSEIMKSGYSRIPVYED-------------- 85
++ K V +++ ++ D ++ E V I++ +R
Sbjct: 1 MKVKDVCKLISL--KPTVVEEDTPIE-EIVDRILEDPVTRTVYVARDNKLVGMIPVMHLL 57
Query: 86 RRTNIVTMFYIKDLALVDPDDNTPLKTLCQFYQNSCYFVFEDTTLDVLLKQFKEGIKGHM 145
+ + +I L+ + +V DT L+ LK +
Sbjct: 58 KVSGFHFFGFIPKEELIRSSMKRLIAKNASEIMLDPVYVHMDTPLEEALKLMIDN-NIQE 116
Query: 146 AFVHRVNNEGEGDPFYETVGLITLEDVIEELIQ 178
V V+ +GE VG + +++ L +
Sbjct: 117 MPV--VDEKGE------IVGDLNSLEILLALWK 141
>d1jr1a4 d.37.1.1 (A:113-232) Type II inosine monophosphate
dehydrogenase CBS domains {Chinese hamster (Cricetulus
griseus) [TaxId: 10029]}
Length = 120
Score = 33.6 bits (76), Expect = 0.009
Identities = 18/127 (14%), Positives = 40/127 (31%), Gaps = 14/127 (11%)
Query: 49 MTKLEDVYMLSYDAILDFETVSEIMKSGYSRIPVYEDRRTN--IVTMFYIKDLALVDPDD 106
D +LS + + + G+ IP+ + R +V + +D+ + ++
Sbjct: 2 FIT--DPVVLSPKDRVR-DVFEAKARHGFCGIPITDTGRMGSRLVGIISSRDIDFLKEEE 58
Query: 107 NTPLKTLCQFYQNSCYFVFEDTTLDVLLKQFKEGIKGHMAFVHRVNNEGEGDPFYETVGL 166
+ + TL + + KG + V + E V +
Sbjct: 59 HDRFLEEIMTKREDLVVAPAGITLKEANEILQRSKKGKLPIV---------NENDELVAI 109
Query: 167 ITLEDVI 173
I D+
Sbjct: 110 IARTDLK 116
>d2yzqa1 d.37.1.1 (A:123-278) Uncharacterized protein PH1780
{Pyrococcus horikoshii [TaxId: 53953]}
Length = 156
Score = 34.2 bits (77), Expect = 0.012
Identities = 18/154 (11%), Positives = 42/154 (27%), Gaps = 24/154 (15%)
Query: 45 VGDVMTKLEDVYMLSYDAILDFETVSEIMKSGYSRIPVYEDRRTNIVTMFYIKDLALVDP 104
+ + V ++ L + ++ S +PV + + + L +
Sbjct: 6 IEPYYQR--YVSIVWEGTPLK-AALKALLLSNSMALPVVDSEGNLVGIVDETDLLRDSEI 62
Query: 105 DDNTPLKTL------CQFYQNSCYFVFEDTTLDVLLKQFKEGIKGHMAFVHRVNNEGEGD 158
L ++ +FE L + K E + + E
Sbjct: 63 VRIMKSTELAASSEEEWILESHPTLLFEKFELQLPNKPVAEIMTRDVIVATPHMTVHEVA 122
Query: 159 PFY---------------ETVGLITLEDVIEELI 177
+ +GLI D+++ L+
Sbjct: 123 LKMAKYSIEQLPVIRGEGDLIGLIRDFDLLKVLV 156
>d3ddja2 d.37.1.1 (A:1-135) Uncharacterized protein SSO3205
{Sulfolobus solfataricus [TaxId: 2287]}
Length = 135
Score = 33.1 bits (74), Expect = 0.022
Identities = 20/144 (13%), Positives = 42/144 (29%), Gaps = 20/144 (13%)
Query: 45 VGDVMTKLEDVYMLSYDAILDFETVSEIMKSGYSRIPVYED--------RRTNIVTMFYI 96
+ +M K + +LS + L +I + G RI V + R Y
Sbjct: 3 IETLMIK--NPPILSKEDRLG-SAFKKINEGGIGRIIVANEKIEGLLTTRDLLSTVESYC 59
Query: 97 KDLALVDPDDNTPLKTLCQFYQNSCYFVFEDTTLDVLLKQFKEGIKGHMAFVHRVNNEGE 156
KD + + + + V+ + + V V+ +
Sbjct: 60 KDSCSQGDLYHISTTPIIDYMTPNPVTVYNTSDEFTAINIMVT-RNFGSLPV--VDINDK 116
Query: 157 GDPFYETVGLITLEDVIEELIQAE 180
VG++T + + +
Sbjct: 117 ------PVGIVTEREFLLLYKDLD 134
>d2vgla_ a.118.1.10 (A:) Adaptin alpha C subunit N-terminal fragment
{Mouse (Mus musculus) [TaxId: 10090]}
Length = 584
Score = 32.1 bits (72), Expect = 0.14
Identities = 21/111 (18%), Positives = 40/111 (36%), Gaps = 27/111 (24%)
Query: 7 GLRSFIR-VRDHDVTTEFNDLEKDEVNIISGAL-ELRRKIVGD----------VMTKLED 54
GL FI +R+ E+ I+ L +R K GD + KL
Sbjct: 4 GLAVFISDIRNCKSKEA-------EIKRINKELANIRSKFKGDKALDGYSKKKYVCKLLF 56
Query: 55 VYMLSYDAILDFETVSEIMKSGYSRIPVYEDRRTNIVTMFYIKDLALVDPD 105
+++L +D ++ S Y +++ I + +I L + +
Sbjct: 57 IFLLGHDIDFGHMEAVNLLSS-----NRYTEKQ--IGYL-FISVLVNSNSE 99
>d3bzka2 a.60.2.6 (A:564-636) Transcriptional accessory factor Tex
{Pseudomonas aeruginosa [TaxId: 287]}
Length = 73
Score = 28.5 bits (64), Expect = 0.28
Identities = 9/46 (19%), Positives = 19/46 (41%)
Query: 133 LLKQFKEGIKGHMAFVHRVNNEGEGDPFYETVGLITLEDVIEELIQ 178
+ + I+ + + ET GL T+ D+++EL +
Sbjct: 20 IAADTERDIRSLIGDSAFLKRLDPKKFTDETFGLPTVTDILKELDK 65
>d2ouxa2 d.37.1.1 (A:136-262) Magnesium transporter MgtE
{Enterococcus faecalis [TaxId: 1351]}
Length = 127
Score = 29.4 bits (65), Expect = 0.31
Identities = 16/137 (11%), Positives = 43/137 (31%), Gaps = 19/137 (13%)
Query: 45 VGDVMTKLEDVYMLSYDAILDFETVSEIMKSGYSRIPVYEDRRTNIVTM---FYIKDLAL 101
G +MT + + + TV M ++ + E V + ++L
Sbjct: 3 AGAIMTT--EFVSIVANQ-----TVRSAMYVLKNQADMAETIYYVYVVDQENHLVGVISL 55
Query: 102 VDPDDNTPLKTLCQFYQNSCYFVFEDTTLDVLLKQFKEGIKGHMAFVHRVNNEGEGDPFY 161
D N + V + + + ++ + + +
Sbjct: 56 RDLIVNDDDTLIADILNERVISVHVGDDQEDVAQTIRDYDFLAVPVT---DYDDH----- 107
Query: 162 ETVGLITLEDVIEELIQ 178
+G++T++D+I+ +
Sbjct: 108 -LLGIVTVDDIIDVIDD 123
>d1zfja4 d.37.1.1 (A:95-220) Type II inosine monophosphate
dehydrogenase CBS domains {Streptococcus pyogenes
[TaxId: 1314]}
Length = 126
Score = 29.5 bits (65), Expect = 0.36
Identities = 16/122 (13%), Positives = 39/122 (31%), Gaps = 14/122 (11%)
Query: 54 DVYMLSYDAILDFETVSEIMKSGYSRIPVYEDRRTN-IVTMFYIKDLALVDPDDNTPLKT 112
D + L+ + + E + + S +P+ E +V + +D+ + +
Sbjct: 6 DPFFLTPEHKVS-EAEELMQRYRISGVPIVETLANRKLVGIITNRDMRFISDYNAPIS-- 62
Query: 113 LCQFYQNSCYFVFEDTTLDVLLKQFKEGIKGHMAFVHRVNNEGEGDPFYETVGLITLEDV 172
T L+ + E + + + GLIT++D+
Sbjct: 63 -EHMTSEHLVTAAVGTDLETAERILHEH-RIEKLPLVDNSGR--------LSGLITIKDI 112
Query: 173 IE 174
+
Sbjct: 113 EK 114
>d2vglb_ a.118.1.10 (B:) Adaptin beta subunit N-terminal fragment
{Human (Homo sapiens) [TaxId: 9606]}
Length = 579
Score = 27.8 bits (61), Expect = 2.4
Identities = 14/86 (16%), Positives = 30/86 (34%), Gaps = 13/86 (15%)
Query: 23 FNDLEKDEVNIISGALE---LRRKIVGDVMTKLEDVYMLSYDAILDFETVSEIMKSGYSR 79
F +K E+ + L ++ + + K+ + D F V M++
Sbjct: 4 FTTNKKGEIFELKAELNNEKKEKRK--EAVKKVIAAMTVGKDVSSLFPDVVNCMQT---- 57
Query: 80 IPVYEDRRTNIVTMFYIKDLALVDPD 105
E ++ + Y+ + A PD
Sbjct: 58 -DNLELKK---LVYLYLMNYAKSQPD 79
>d1nkra2 b.1.1.4 (A:102-200) Killer cell inhibitory receptor {Human
(Homo sapiens), p58-cl42 kir [TaxId: 9606]}
Length = 99
Score = 26.2 bits (57), Expect = 3.0
Identities = 7/41 (17%), Positives = 10/41 (24%)
Query: 200 QSSHRGQDFTLFAEKSEAQRIHISPQLNLATFQFLSSNFYV 240
S + L E +R + TFQ
Sbjct: 28 SSRSSYDMYHLSREGEAHERRLPAGPKVNGTFQADFPLGPA 68
>d2bcgg2 c.3.1.3 (G:400-446) Guanine nucleotide dissociation
inhibitor, GDI {Baker's yeast (Saccharomyces
cerevisiae) [TaxId: 4932]}
Length = 47
Score = 23.9 bits (52), Expect = 6.1
Identities = 9/22 (40%), Positives = 15/22 (68%)
Query: 59 SYDAILDFETVSEIMKSGYSRI 80
SYDA FE++++ +K Y R+
Sbjct: 15 SYDASSHFESMTDDVKDIYFRV 36
>d1y3ta1 b.82.1.5 (A:5-334) Hypothetical protein YxaG {Bacillus
subtilis [TaxId: 1423]}
Length = 330
Score = 26.4 bits (57), Expect = 6.2
Identities = 13/174 (7%), Positives = 33/174 (18%), Gaps = 21/174 (12%)
Query: 142 KGHMAFV-----HRVNNEGEGDPFYETVGLITLEDVIEELIQ------AEIMDETDVWTD 190
G A + H + + + + +V +
Sbjct: 87 SGDYANIPAGTPHSYRMQSHRTRLVSYTMKGNVAHLYSVIGNPYDHAEHPPYASEEVSNE 146
Query: 191 NQHKTKRHKQSSHRGQDFTLFAEKSEAQRIHISPQLNLATFQFLSSNFYVGSLLDRITQK 250
+ + + K + G L RI
Sbjct: 147 RFAEAAAVATIVFLDEAKPACSAKLAELTELPDGAVPYVLESGEGDRLLTGDQLHRIVAA 206
Query: 251 GTSQQ----------KPTFKSLKKRNKPVDYFVLILEGRAEVVVGKENLVYEAG 294
+ + + ++ LEG+ + + + G
Sbjct: 207 QKNTDGQFIVVSSEGPKGDRIVDHYHEYHTETFYCLEGQMTMWTDGQEIQLNPG 260
>d1g2ra_ d.192.1.1 (A:) Hypothetical cytosolic protein SP0554
{Streptococcus pneumoniae [TaxId: 1313]}
Length = 94
Score = 24.7 bits (54), Expect = 7.7
Identities = 12/54 (22%), Positives = 22/54 (40%)
Query: 341 FVPDYSVRATTEMFYVKIRRSFYLAAKRATLMEKSKKSEESMSAGDQFEDEVEK 394
D + +A Y+K+ + L AK+ + +S E S D+ V+
Sbjct: 31 VFIDPTGKANGRGAYIKLDNAEALEAKKKKVFNRSFSMEVEESFYDELIAYVDH 84
>d1lara1 c.45.1.2 (A:1307-1623) RPTP Lar {Human (Homo sapiens)
[TaxId: 9606]}
Length = 317
Score = 25.9 bits (56), Expect = 9.5
Identities = 16/81 (19%), Positives = 32/81 (39%), Gaps = 15/81 (18%)
Query: 27 EKDEVNIISGALELRRKIVGDVMTKLEDVYMLSYDAILDFETVSEIMKSGYSRIPVYEDR 86
+ V+I +R + V T ED Y+ ++A+L+ G++ +P
Sbjct: 238 HEKTVDIYGHVTCMRSQRNYMVQT--EDQYVFIHEALLEA------ATCGHTEVPARNLY 289
Query: 87 RTNIVTMFYIKDLALVDPDDN 107
+I+ L V P ++
Sbjct: 290 A-------HIQKLGQVPPGES 303
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.319 0.134 0.382
Gapped
Lambda K H
0.267 0.0425 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,428,016
Number of extensions: 65888
Number of successful extensions: 207
Number of sequences better than 10.0: 1
Number of HSP's gapped: 202
Number of HSP's successfully gapped: 35
Length of query: 396
Length of database: 2,407,596
Length adjustment: 87
Effective length of query: 309
Effective length of database: 1,213,086
Effective search space: 374843574
Effective search space used: 374843574
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 54 (25.4 bits)