RPS-BLAST 2.2.26 [Sep-21-2011]

Database: CDD.v3.10 
           44,354 sequences; 10,937,602 total letters

Searching..................................................done

Query= psy4850
         (64 letters)



>gnl|CDD|224173 COG1253, TlyC, Hemolysins and related proteins containing CBS
           domains [General function prediction only].
          Length = 429

 Score = 36.1 bits (84), Expect = 3e-04
 Identities = 11/40 (27%), Positives = 22/40 (55%)

Query: 12  LEKDEVNIISGALELRRKIVGDVMTKLEDVYMLSYDAILD 51
           LE++E  +I+  L+L  + V ++MT   D+  L     ++
Sbjct: 189 LEEEEREMINNVLDLDDRTVREIMTPRTDIVALDLTDTVE 228


>gnl|CDD|143436 cd07118, ALDH_SNDH, Gluconobacter oxydans L-sorbosone
           dehydrogenase-like.  Included in this CD is the
           L-sorbosone dehydrogenase (SNDH) from Gluconobacter
           oxydans UV10. In G. oxydans,  D-sorbitol is converted to
           2-keto-L-gulonate (a precursor of L-ascorbic acid) in
           sequential oxidation steps catalyzed by a FAD-dependent,
           L-sorbose dehydrogenase and an NAD(P)+-dependent,
           L-sorbosone dehydrogenase.
          Length = 454

 Score = 25.0 bits (55), Expect = 2.5
 Identities = 12/30 (40%), Positives = 17/30 (56%), Gaps = 4/30 (13%)

Query: 17  VNIISGALELRRKIVGDVMTKLEDVYMLSY 46
           VNI++G        VG  MT+  DV M+S+
Sbjct: 179 VNIVTGY----GATVGQAMTEHPDVDMVSF 204


>gnl|CDD|179167 PRK00919, PRK00919, GMP synthase subunit B; Validated.
          Length = 307

 Score = 24.9 bits (55), Expect = 2.6
 Identities = 10/21 (47%), Positives = 13/21 (61%)

Query: 11  DLEKDEVNIISGALELRRKIV 31
           DL KDEV  ++ AL L  +I 
Sbjct: 162 DLYKDEVREVARALGLPEEIS 182


  Database: CDD.v3.10
    Posted date:  Mar 20, 2013  7:55 AM
  Number of letters in database: 10,937,602
  Number of sequences in database:  44,354
  
Lambda     K      H
   0.315    0.134    0.341 

Gapped
Lambda     K      H
   0.267   0.0683    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 3,199,366
Number of extensions: 241558
Number of successful extensions: 157
Number of sequences better than 10.0: 1
Number of HSP's gapped: 157
Number of HSP's successfully gapped: 9
Length of query: 64
Length of database: 10,937,602
Length adjustment: 35
Effective length of query: 29
Effective length of database: 9,385,212
Effective search space: 272171148
Effective search space used: 272171148
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 53 (24.3 bits)