RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy4850
         (64 letters)



>d1lara2 c.45.1.2 (A:1628-1876) RPTP Lar {Human (Homo sapiens)
           [TaxId: 9606]}
          Length = 249

 Score = 25.9 bits (56), Expect = 0.31
 Identities = 12/40 (30%), Positives = 18/40 (45%), Gaps = 2/40 (5%)

Query: 13  EKDEVNIISGALELRRKIVGDVMTKLEDVYMLSYDAILDF 52
            +  V++      LR +    V T  ED Y L Y A L++
Sbjct: 208 YEGVVDMFQTVKTLRTQRPAMVQT--EDQYQLCYRAALEY 245


>d1l8ka_ c.45.1.2 (A:) Tyrosine phosphatase {Human (Homo sapiens),
           T-cell [TaxId: 9606]}
          Length = 273

 Score = 25.6 bits (55), Expect = 0.44
 Identities = 12/40 (30%), Positives = 21/40 (52%), Gaps = 2/40 (5%)

Query: 13  EKDEVNIISGALELRRKIVGDVMTKLEDVYMLSYDAILDF 52
           + D++NI    L +R+  +G + T   D    SY AI++ 
Sbjct: 234 KGDDINIKQVLLNMRKYRMGLIQT--PDQLRFSYMAIIEG 271


>d1lara1 c.45.1.2 (A:1307-1623) RPTP Lar {Human (Homo sapiens)
           [TaxId: 9606]}
          Length = 317

 Score = 23.6 bits (50), Expect = 2.0
 Identities = 10/40 (25%), Positives = 19/40 (47%), Gaps = 2/40 (5%)

Query: 13  EKDEVNIISGALELRRKIVGDVMTKLEDVYMLSYDAILDF 52
            +  V+I      +R +    V T  ED Y+  ++A+L+ 
Sbjct: 238 HEKTVDIYGHVTCMRSQRNYMVQT--EDQYVFIHEALLEA 275


>d1q1la_ d.258.1.1 (A:) Chorismate synthase, AroC {Aquifex
          aeolicus [TaxId: 63363]}
          Length = 397

 Score = 23.0 bits (49), Expect = 3.2
 Identities = 6/13 (46%), Positives = 7/13 (53%)

Query: 13 EKDEVNIISGALE 25
          EKD   I+SG   
Sbjct: 56 EKDTAEILSGVRF 68


>d1qxoa_ d.258.1.1 (A:) Chorismate synthase, AroC {Streptococcus
          pneumoniae [TaxId: 1313]}
          Length = 388

 Score = 23.0 bits (49), Expect = 3.7
 Identities = 5/13 (38%), Positives = 6/13 (46%)

Query: 13 EKDEVNIISGALE 25
          E D+V   SG   
Sbjct: 52 ENDQVVFTSGVRH 64


>d1um0a_ d.258.1.1 (A:) Chorismate synthase, AroC {Helicobacter
          pylori [TaxId: 210]}
          Length = 365

 Score = 22.3 bits (47), Expect = 5.6
 Identities = 7/13 (53%), Positives = 8/13 (61%)

Query: 13 EKDEVNIISGALE 25
          E D+V I SG  E
Sbjct: 59 EDDKVEITSGVFE 71


>d1r53a_ d.258.1.1 (A:) Chorismate synthase, AroC {Baker's yeast
          (Saccharomyces cerevisiae) [TaxId: 4932]}
          Length = 371

 Score = 22.2 bits (47), Expect = 5.9
 Identities = 7/10 (70%), Positives = 7/10 (70%)

Query: 13 EKDEVNIISG 22
          EKD V I SG
Sbjct: 59 EKDRVEIQSG 68


>d1sq1a_ d.258.1.1 (A:) Chorismate synthase, AroC {Campylobacter
          jejuni [TaxId: 197]}
          Length = 360

 Score = 22.2 bits (47), Expect = 6.2
 Identities = 4/10 (40%), Positives = 7/10 (70%)

Query: 13 EKDEVNIISG 22
          E D+  ++SG
Sbjct: 58 ESDKAQVLSG 67


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.315    0.134    0.341 

Gapped
Lambda     K      H
   0.267   0.0500    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 225,006
Number of extensions: 7958
Number of successful extensions: 21
Number of sequences better than 10.0: 1
Number of HSP's gapped: 21
Number of HSP's successfully gapped: 15
Length of query: 64
Length of database: 2,407,596
Length adjustment: 33
Effective length of query: 31
Effective length of database: 1,954,506
Effective search space: 60589686
Effective search space used: 60589686
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 47 (22.4 bits)