BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy4851
(62 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q9Y2L1|RRP44_HUMAN Exosome complex exonuclease RRP44 OS=Homo sapiens GN=DIS3 PE=1 SV=2
Length = 958
Score = 82.0 bits (201), Expect = 9e-16, Method: Composition-based stats.
Identities = 35/48 (72%), Positives = 39/48 (81%)
Query: 15 RYPQGHFVRALGPIGDKDTENEVLLLEHDVPHSKFSDLVLSYLPPMPW 62
RYP GHFVR LG +G+K+TE EVLLLEHDVPH FS VLS+LP MPW
Sbjct: 410 RYPNGHFVRNLGDVGEKETETEVLLLEHDVPHQPFSQAVLSFLPKMPW 457
>sp|Q9CSH3|RRP44_MOUSE Exosome complex exonuclease RRP44 OS=Mus musculus GN=Dis3 PE=2 SV=4
Length = 958
Score = 80.5 bits (197), Expect = 3e-15, Method: Composition-based stats.
Identities = 34/48 (70%), Positives = 39/48 (81%)
Query: 15 RYPQGHFVRALGPIGDKDTENEVLLLEHDVPHSKFSDLVLSYLPPMPW 62
RYP GHFV+ LG +G+K+TE EVLLLEHDVPH FS VLS+LP MPW
Sbjct: 410 RYPNGHFVKNLGDVGEKETETEVLLLEHDVPHQPFSQAVLSFLPRMPW 457
>sp|Q17632|RRP44_CAEEL Probable exosome complex exonuclease RRP44 OS=Caenorhabditis
elegans GN=dis-3 PE=3 SV=2
Length = 961
Score = 70.9 bits (172), Expect = 2e-12, Method: Composition-based stats.
Identities = 28/48 (58%), Positives = 38/48 (79%)
Query: 15 RYPQGHFVRALGPIGDKDTENEVLLLEHDVPHSKFSDLVLSYLPPMPW 62
+YP GH+VR++G +G ++TENEVLLLEHD+PH+ FS+ VL LP W
Sbjct: 419 KYPLGHYVRSIGEMGSRETENEVLLLEHDIPHAPFSESVLDCLPREEW 466
>sp|P37202|DIS3_SCHPO Exosome complex exonuclease dis3 OS=Schizosaccharomyces pombe
(strain 972 / ATCC 24843) GN=dis3 PE=1 SV=1
Length = 970
Score = 54.3 bits (129), Expect = 2e-07, Method: Composition-based stats.
Identities = 25/44 (56%), Positives = 29/44 (65%)
Query: 15 RYPQGHFVRALGPIGDKDTENEVLLLEHDVPHSKFSDLVLSYLP 58
RYP+GHFVR LG + K+ E E LLLE+DV H F VL LP
Sbjct: 433 RYPEGHFVRDLGEMETKEAETEALLLEYDVQHRPFPKAVLDCLP 476
>sp|Q08162|RRP44_YEAST Exosome complex exonuclease DIS3 OS=Saccharomyces cerevisiae
(strain ATCC 204508 / S288c) GN=DIS3 PE=1 SV=1
Length = 1001
Score = 51.2 bits (121), Expect = 2e-06, Method: Composition-based stats.
Identities = 25/44 (56%), Positives = 27/44 (61%)
Query: 15 RYPQGHFVRALGPIGDKDTENEVLLLEHDVPHSKFSDLVLSYLP 58
+YP GHFVR LG I E E LLLEHDV + FS VL LP
Sbjct: 461 KYPLGHFVRDLGTIESAQAETEALLLEHDVEYRPFSKKVLECLP 504
>sp|O14040|DIS3L_SCHPO Dis3-like exonuclease C2C4.07c OS=Schizosaccharomyces pombe (strain
972 / ATCC 24843) GN=SPAC2C4.07c PE=3 SV=1
Length = 927
Score = 43.5 bits (101), Expect = 3e-04, Method: Composition-based stats.
Identities = 22/50 (44%), Positives = 27/50 (54%)
Query: 13 HMRYPQGHFVRALGPIGDKDTENEVLLLEHDVPHSKFSDLVLSYLPPMPW 62
+ RYP G LG I D + LLLE+ + S FSD VL+ LPP W
Sbjct: 382 YSRYPMGVLGEKLGNITDVEAYTNALLLENGISSSPFSDEVLNCLPPDDW 431
>sp|Q6GN11|DI3L1_XENLA DIS3-like exonuclease 1 OS=Xenopus laevis GN=dis3l PE=2 SV=2
Length = 1040
Score = 41.6 bits (96), Expect = 0.001, Method: Composition-based stats.
Identities = 20/51 (39%), Positives = 30/51 (58%), Gaps = 4/51 (7%)
Query: 16 YPQGHFVRALGPIGDKDTENEVLLLEHDVPHSKFSDLVLSYLPP----MPW 62
YP GHFVRALG G+ + E +L+E+ + + FS+ L+ +P PW
Sbjct: 400 YPNGHFVRALGRAGNLEAEIATILVENSISLNPFSEAQLAEMPSNTHENPW 450
>sp|Q09568|YR86_CAEEL Uncharacterized ribonuclease F48E8.6 OS=Caenorhabditis elegans
GN=F48E8.6 PE=3 SV=2
Length = 848
Score = 41.2 bits (95), Expect = 0.002, Method: Composition-based stats.
Identities = 19/43 (44%), Positives = 25/43 (58%)
Query: 16 YPQGHFVRALGPIGDKDTENEVLLLEHDVPHSKFSDLVLSYLP 58
Y G V+ LG G+ DTE E ++ EH + H +FSD L LP
Sbjct: 274 YADGRLVKLLGMSGEIDTETERIVYEHQIDHREFSDECLESLP 316
>sp|Q8C0S1|DI3L1_MOUSE DIS3-like exonuclease 1 OS=Mus musculus GN=Dis3l PE=2 SV=2
Length = 1053
Score = 40.8 bits (94), Expect = 0.002, Method: Composition-based stats.
Identities = 20/51 (39%), Positives = 28/51 (54%), Gaps = 4/51 (7%)
Query: 16 YPQGHFVRALGPIGDKDTENEVLLLEHDVPHSKFSDLVLSYL----PPMPW 62
YP GHFVR LG IGD + E +L+E+ + FS+ + + P PW
Sbjct: 405 YPNGHFVRVLGRIGDLEGEIATILVENSISVVPFSEAQMCEMPVNTPENPW 455
>sp|A0JN80|DI3L1_BOVIN DIS3-like exonuclease 1 OS=Bos taurus GN=DIS3L PE=2 SV=2
Length = 1053
Score = 40.8 bits (94), Expect = 0.003, Method: Composition-based stats.
Identities = 20/51 (39%), Positives = 28/51 (54%), Gaps = 4/51 (7%)
Query: 16 YPQGHFVRALGPIGDKDTENEVLLLEHDVPHSKFSDLVLSYL----PPMPW 62
YP GHFVR LG IGD + E +L+E+ + FS+ + + P PW
Sbjct: 405 YPNGHFVRVLGRIGDLEGEIATILVENSISVVPFSEAQMCEMPVNTPENPW 455
>sp|Q8TF46|DI3L1_HUMAN DIS3-like exonuclease 1 OS=Homo sapiens GN=DIS3L PE=1 SV=2
Length = 1054
Score = 40.8 bits (94), Expect = 0.003, Method: Composition-based stats.
Identities = 20/51 (39%), Positives = 28/51 (54%), Gaps = 4/51 (7%)
Query: 16 YPQGHFVRALGPIGDKDTENEVLLLEHDVPHSKFSDLVLSYL----PPMPW 62
YP GHFVR LG IGD + E +L+E+ + FS+ + + P PW
Sbjct: 405 YPNGHFVRVLGRIGDLEGEIATILVENSISVIPFSEAQMCEMPVNTPESPW 455
>sp|Q5R5N8|DI3L1_PONAB DIS3-like exonuclease 1 OS=Pongo abelii GN=DIS3L PE=2 SV=1
Length = 1054
Score = 40.4 bits (93), Expect = 0.003, Method: Composition-based stats.
Identities = 20/51 (39%), Positives = 28/51 (54%), Gaps = 4/51 (7%)
Query: 16 YPQGHFVRALGPIGDKDTENEVLLLEHDVPHSKFSDLVLSYL----PPMPW 62
YP GHFVR LG IGD + E +L+E+ + FS+ + + P PW
Sbjct: 405 YPNGHFVRVLGRIGDLEGEIATILVENSISVIPFSEAQMCEMPVNTPENPW 455
>sp|Q5U2P0|DI3L1_RAT DIS3-like exonuclease 1 OS=Rattus norvegicus GN=Dis3l PE=2 SV=2
Length = 1054
Score = 40.4 bits (93), Expect = 0.003, Method: Composition-based stats.
Identities = 20/51 (39%), Positives = 28/51 (54%), Gaps = 4/51 (7%)
Query: 16 YPQGHFVRALGPIGDKDTENEVLLLEHDVPHSKFSDLVLSYLP----PMPW 62
YP GHFVR LG IGD + E +L+E+ + FS+ + +P PW
Sbjct: 405 YPNGHFVRVLGRIGDLEGEIATILVENSINVVPFSEAQMCEMPVNTAENPW 455
>sp|Q0P4R5|DI3L1_XENTR DIS3-like exonuclease 1 OS=Xenopus tropicalis GN=dis3l PE=2 SV=2
Length = 1039
Score = 40.4 bits (93), Expect = 0.004, Method: Composition-based stats.
Identities = 19/51 (37%), Positives = 29/51 (56%), Gaps = 4/51 (7%)
Query: 16 YPQGHFVRALGPIGDKDTENEVLLLEHDVPHSKFSDLVLSYLPP----MPW 62
YP GHFVR LG G+ + E +L+E+ + + FS+ L+ +P PW
Sbjct: 399 YPNGHFVRVLGRTGNLEAEIATILVENSISVNPFSEAQLAEMPSNTPESPW 449
>sp|A2RV18|DI3L1_DANRE DIS3-like exonuclease 1 OS=Danio rerio GN=dis3l PE=2 SV=1
Length = 1057
Score = 39.7 bits (91), Expect = 0.005, Method: Composition-based stats.
Identities = 20/51 (39%), Positives = 29/51 (56%), Gaps = 4/51 (7%)
Query: 16 YPQGHFVRALGPIGDKDTENEVLLLEHDVPHSKFSDLVLSYLP----PMPW 62
YP GHFVR LG G+ +TE + +L+E+ + FS+ L +P PW
Sbjct: 399 YPNGHFVRVLGKSGELETEIQTILVENCIHVPPFSEAQLREMPVNTEENPW 449
>sp|Q0V9R3|DI3L2_XENTR DIS3-like exonuclease 2 OS=Xenopus tropicalis GN=dis3l2 PE=2 SV=1
Length = 834
Score = 36.6 bits (83), Expect = 0.044, Method: Compositional matrix adjust.
Identities = 18/48 (37%), Positives = 29/48 (60%), Gaps = 1/48 (2%)
Query: 16 YPQGHFVRALGPIGDKDTENEVLLLEHDVPHSKFSDLVLSYLPP-MPW 62
+ +G +++LG G+ + E E +L+E+ V S F D VL LP +PW
Sbjct: 285 FAEGKLMKSLGQAGEIEPETEGILVEYGVDFSDFPDKVLQCLPQDLPW 332
>sp|Q73MH0|DNLJ_TREDE DNA ligase OS=Treponema denticola (strain ATCC 35405 / CIP 103919 /
DSM 14222) GN=ligA PE=3 SV=1
Length = 645
Score = 30.0 bits (66), Expect = 4.0, Method: Composition-based stats.
Identities = 14/26 (53%), Positives = 18/26 (69%), Gaps = 4/26 (15%)
Query: 14 MRYPQGHFVRAL----GPIGDKDTEN 35
++Y +GHFVRA+ G IGD TEN
Sbjct: 107 LQYEEGHFVRAVTRGDGKIGDDITEN 132
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.326 0.146 0.473
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 24,402,871
Number of Sequences: 539616
Number of extensions: 773090
Number of successful extensions: 1912
Number of sequences better than 100.0: 17
Number of HSP's better than 100.0 without gapping: 16
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 1895
Number of HSP's gapped (non-prelim): 18
length of query: 62
length of database: 191,569,459
effective HSP length: 34
effective length of query: 28
effective length of database: 173,222,515
effective search space: 4850230420
effective search space used: 4850230420
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 55 (25.8 bits)