Query psy4851
Match_columns 62
No_of_seqs 114 out of 421
Neff 6.4
Searched_HMMs 29240
Date Fri Aug 16 19:18:32 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy4851.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/4851hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2vnu_D Exosome complex exonucl 99.6 2.1E-15 7.3E-20 111.6 6.9 59 1-60 207-265 (760)
2 2wp8_J Exosome complex exonucl 99.6 4.6E-15 1.6E-19 112.4 6.9 61 1-62 424-486 (977)
3 2id0_A Exoribonuclease 2; RNAs 99.2 5.8E-12 2E-16 91.9 3.6 57 1-59 127-184 (644)
4 2r7d_A Ribonuclease II family 94.1 0.0082 2.8E-07 42.5 -0.3 36 14-50 20-68 (469)
5 3frr_A Uncharacterized protein 61.2 6 0.00021 25.0 2.6 26 33-59 166-191 (191)
6 3g87_A Malonyl COA-acyl carrie 51.3 3.2 0.00011 28.5 0.0 33 5-40 337-370 (394)
7 3dd7_B PHD, prevent HOST death 49.0 7.8 0.00027 16.8 1.1 15 31-45 2-16 (23)
8 2ey4_C Small nucleolar RNP sim 35.4 22 0.00074 19.5 1.8 18 14-31 41-58 (82)
9 2csu_A 457AA long hypothetical 33.8 16 0.00054 25.4 1.3 43 15-57 289-331 (457)
10 2a7y_A Hypothetical protein RV 31.3 26 0.00089 19.6 1.7 14 18-31 25-38 (83)
11 2juc_A PRE-mRNA-splicing facto 31.2 25 0.00086 18.3 1.6 16 30-45 7-22 (59)
12 2eqn_A Hypothetical protein LO 31.2 26 0.0009 19.8 1.8 18 14-31 60-77 (103)
13 3urg_A ALR1010 protein, CCBP; 27.9 30 0.001 21.2 1.7 31 2-33 64-94 (146)
14 2au5_A Conserved domain protei 27.3 14 0.00047 22.2 0.1 13 47-59 41-53 (139)
15 1wr2_A Hypothetical protein PH 27.1 47 0.0016 20.4 2.6 20 30-49 20-39 (238)
16 1ny4_A 30S ribosomal protein S 26.7 39 0.0013 18.8 1.9 13 18-30 8-20 (82)
17 2yy0_A C-MYC-binding protein; 26.7 22 0.00074 18.0 0.8 25 18-42 4-28 (53)
18 1ne3_A 30S ribosomal protein S 26.4 37 0.0013 18.2 1.7 13 18-30 6-18 (68)
19 2hvy_B GAR1, small nucleolar R 24.1 33 0.0011 19.7 1.3 18 14-31 41-58 (104)
20 1y1l_A Arsenate reductase (ARS 23.1 38 0.0013 19.1 1.5 23 29-52 38-60 (124)
21 2v3m_A NAF1; ribosomal protein 22.6 32 0.0011 20.4 1.1 18 14-31 67-84 (131)
22 1eik_A RNA polymerase subunit 22.3 81 0.0028 17.1 2.7 19 32-50 19-37 (77)
23 1taf_A TFIID TBP associated fa 21.8 44 0.0015 17.6 1.4 21 35-57 7-27 (68)
24 3ufx_B Succinyl-COA synthetase 20.4 57 0.002 22.3 2.2 19 31-49 4-22 (397)
No 1
>2vnu_D Exosome complex exonuclease RRP44; hydrolase-RNA complex, RNA degradation, RNA-binding, RNA Pro; HET: 1PE; 2.30A {Saccharomyces cerevisiae} SCOP: b.40.4.5 b.40.4.5 b.40.4.5 b.40.4.16
Probab=99.59 E-value=2.1e-15 Score=111.62 Aligned_cols=59 Identities=46% Similarity=0.661 Sum_probs=55.9
Q ss_pred CEEEEEeecCCCCCCCCceEEEeecCCCCChHHHHHHHHHhCCCCCCCCcHHHHhhCCCC
Q psy4851 1 MIFALIKPLIIHHMRYPQGHFVRALGPIGDKDTENEVLLLEHDVPHSKFSDLVLSYLPPM 60 (62)
Q Consensus 1 ~~~a~I~~W~~~~s~~P~G~iv~~LG~~gd~e~E~~aIL~e~~i~~~~F~~~vl~~lp~~ 60 (62)
+|+|+|++||. .+.+|.|+|+++||..||+++|+.+||.+|||+..+||++|++|+|..
T Consensus 207 ~vvv~i~~~p~-~~~~p~G~i~~~LG~~~d~~~e~~~il~~~~l~~~~F~~~vl~~~~~~ 265 (760)
T 2vnu_D 207 RIVISIDSWPT-THKYPLGHFVRDLGTIESAQAETEALLLEHDVEYRPFSKKVLECLPAE 265 (760)
T ss_dssp EEEEEEEECCT-TCSSCEEEEEEEEEESSCSHHHHHHHHHHTTCCCSCCCHHHHTTSCTT
T ss_pred EEEEEEeeccC-CCCCCcEEEEEEeCCCCCchhHHHHHHHHCCCCCcCCCHHHHHHHHhc
Confidence 37999999998 899999999999999999999999999999999877999999999865
No 2
>2wp8_J Exosome complex exonuclease DIS3; nucleus, hydrolase, RNA-binding, exonucle binding, mitochondrion, rRNA processing; 3.00A {Saccharomyces cerevisiae}
Probab=99.56 E-value=4.6e-15 Score=112.44 Aligned_cols=61 Identities=46% Similarity=0.713 Sum_probs=57.2
Q ss_pred CEEEEEeecCCCCCCCCceEEEeecCCCCChHHHHHHHHHhCCCCCCCCcHHHHhhCCCC--CC
Q psy4851 1 MIFALIKPLIIHHMRYPQGHFVRALGPIGDKDTENEVLLLEHDVPHSKFSDLVLSYLPPM--PW 62 (62)
Q Consensus 1 ~~~a~I~~W~~~~s~~P~G~iv~~LG~~gd~e~E~~aIL~e~~i~~~~F~~~vl~~lp~~--~w 62 (62)
.|+|+|++||. .+++|.|+|+++||..||+++|+.+||.+|||++.+||++|++|||.. +|
T Consensus 424 ~vvv~I~~wp~-~~~~p~G~iv~~LG~~~d~~~e~~~il~~~~l~~~~Fp~~vl~~~~~~~~~~ 486 (977)
T 2wp8_J 424 RIVISIDSWPT-THKYPLGHFVRDLGTIESAQAETEALLLEHDVEYRPFSKKVLECLPAEGHDW 486 (977)
T ss_dssp EEEEEEEECCT-TCSSCEEEEEEEEEESSCSHHHHHHHHHHTTCCCSCCCHHHHTTSCTTGGGC
T ss_pred EEEEEEeeccC-CCCCccEEEEEEeCCCCCcchhHHHHHHHcCCCcccCCHHHHHHHHhccccc
Confidence 37999999998 899999999999999999999999999999999877999999999976 55
No 3
>2id0_A Exoribonuclease 2; RNAse, exonuclease, hydrolyase, mRNA decay, RNR family, hydrolase; 2.35A {Escherichia coli} SCOP: b.40.4.5 b.40.4.5 b.40.4.5 b.40.4.16 PDB: 2ix0_A* 2ix1_A
Probab=99.21 E-value=5.8e-12 Score=91.94 Aligned_cols=57 Identities=12% Similarity=-0.008 Sum_probs=52.2
Q ss_pred CEEEEEeecCCCCCCCC-ceEEEeecCCCCChHHHHHHHHHhCCCCCCCCcHHHHhhCCC
Q psy4851 1 MIFALIKPLIIHHMRYP-QGHFVRALGPIGDKDTENEVLLLEHDVPHSKFSDLVLSYLPP 59 (62)
Q Consensus 1 ~~~a~I~~W~~~~s~~P-~G~iv~~LG~~gd~e~E~~aIL~e~~i~~~~F~~~vl~~lp~ 59 (62)
+|+|+|++||. .+.+| .|+|+++||..||+.+|+.++|.+||++. +||+++++++|.
T Consensus 127 ~v~v~i~~~p~-~~~~p~~g~i~~~LG~~~d~~~e~~~~l~~~~l~~-~fp~~~~~~~~~ 184 (644)
T 2id0_A 127 WAVAEMRRHPL-KGDRSFYAELTQYITFGDDHFVPWWVTLARHNLEK-EAPDGVATEMLD 184 (644)
T ss_dssp EEEEEEEECGG-GTCSSCEEEEEEEEECTTCTTHHHHHHHHHTTCCC-SCCCCCCCCCCC
T ss_pred EEEEEEecCcC-CCCCCceEEEEEEeCCCCCccchHHHHHHHcCCCC-CCChHHhhcCCc
Confidence 37899999998 78899 99999999999999999999999999998 599998877653
No 4
>2r7d_A Ribonuclease II family protein; structural genomics, PSI-2, structure initiative, northeast structural genomics consort NESG; 1.80A {Deinococcus radiodurans R1} SCOP: b.40.4.5 b.40.4.16 PDB: 2r7f_A
Probab=94.05 E-value=0.0082 Score=42.53 Aligned_cols=36 Identities=8% Similarity=-0.007 Sum_probs=31.3
Q ss_pred CCCCceEEEeecCCCCChHHHHHH-------------HHHhCCCCCCCCc
Q psy4851 14 MRYPQGHFVRALGPIGDKDTENEV-------------LLLEHDVPHSKFS 50 (62)
Q Consensus 14 s~~P~G~iv~~LG~~gd~e~E~~a-------------IL~e~~i~~~~F~ 50 (62)
.+.|.|+|+++||..++..++.+. ++.+||++. .||
T Consensus 20 ~~~~~g~i~~~LG~~~~~~~~~~lL~~~G~~~~~~~~~~~~~~lp~-~fp 68 (469)
T 2r7d_A 20 GRADKSRVLRDLKLPETPEAAHALLLRLGVWDEARTPYADRLRAAL-NAV 68 (469)
T ss_dssp TSCSCCHHHHHTTCCCSHHHHHHHHHHHTSSCTTCCCHHHHTTCCC-SCC
T ss_pred CCCcceeEeeecCCCCChhhHHHHHHhcCCCCchhhHHHHHcCCCC-CCc
Confidence 467999999999999999999854 667889998 599
No 5
>3frr_A Uncharacterized protein KIAA0174; ESCRT, ESCRT-III, CHMP, IST1, alternative splicing, phosphoprotein, protein binding; 1.80A {Homo sapiens} PDB: 3frs_A
Probab=61.24 E-value=6 Score=25.03 Aligned_cols=26 Identities=19% Similarity=0.213 Sum_probs=20.1
Q ss_pred HHHHHHHHhCCCCCCCCcHHHHhhCCC
Q psy4851 33 TENEVLLLEHDVPHSKFSDLVLSYLPP 59 (62)
Q Consensus 33 ~E~~aIL~e~~i~~~~F~~~vl~~lp~ 59 (62)
-=+..|..+|||++. =++.+|++.|+
T Consensus 166 ~yL~EIA~~y~V~w~-p~~~~~~~~~~ 191 (191)
T 3frr_A 166 RYLIEIAKNYNVPYE-PDSVVMAEAPP 191 (191)
T ss_dssp HHHHHHHHHHTCCCC-CCHHHHHTC--
T ss_pred HHHHHHHHHcCCCCC-CchhhhccCCC
Confidence 346789999999996 48999998874
No 6
>3g87_A Malonyl COA-acyl carrier protein transacylase; ssgcid, niaid, decode biostructures, dried seaweed, acyltran transferase; 2.30A {Burkholderia pseudomallei}
Probab=51.26 E-value=3.2 Score=28.50 Aligned_cols=33 Identities=21% Similarity=0.142 Sum_probs=0.0
Q ss_pred EEeecCCCCCCCCceEEEeecCC-CCChHHHHHHHHH
Q psy4851 5 LIKPLIIHHMRYPQGHFVRALGP-IGDKDTENEVLLL 40 (62)
Q Consensus 5 ~I~~W~~~~s~~P~G~iv~~LG~-~gd~e~E~~aIL~ 40 (62)
++.+|- ..||.|..|++-+- .+..+|-|+|+|.
T Consensus 337 ~~~~w~---~~~~~g~~v~~~~~~~~~~~~~~~~~~~ 370 (394)
T 3g87_A 337 RVAAWN---RDYPVGTRVRSSLIHDDVLETRTPATVL 370 (394)
T ss_dssp -------------------------------------
T ss_pred HHHHHH---hcCCCceEEEecccCCcceeecchhhhh
Confidence 466884 57999999999966 6666888887764
No 7
>3dd7_B PHD, prevent HOST death protein; all alpha, ribosome inhibitor; HET: MSE; 1.70A {Enterobacteria phage P1}
Probab=49.03 E-value=7.8 Score=16.77 Aligned_cols=15 Identities=27% Similarity=0.147 Sum_probs=12.6
Q ss_pred hHHHHHHHHHhCCCC
Q psy4851 31 KDTENEVLLLEHDVP 45 (62)
Q Consensus 31 ~e~E~~aIL~e~~i~ 45 (62)
.++|..+|..+||-.
T Consensus 2 lDaEFaaIm~~hg~t 16 (23)
T 3dd7_B 2 LDAEFASLFDTLDST 16 (26)
T ss_pred chhHHHHHHHHHhHH
Confidence 578999999999854
No 8
>2ey4_C Small nucleolar RNP similar to GAR1; trimeric complex, structural genomics, PSI, protein structur initiative; 2.11A {Pyrococcus furiosus} SCOP: b.43.3.5 PDB: 3mqk_C 2rfk_C
Probab=35.36 E-value=22 Score=19.49 Aligned_cols=18 Identities=17% Similarity=0.119 Sum_probs=15.4
Q ss_pred CCCCceEEEeecCCCCCh
Q psy4851 14 MRYPQGHFVRALGPIGDK 31 (62)
Q Consensus 14 s~~P~G~iv~~LG~~gd~ 31 (62)
++...|+|.+++|+..++
T Consensus 41 ~~~~IGkV~dIfGPv~~p 58 (82)
T 2ey4_C 41 RLQFVGIVKDVFGPVKMP 58 (82)
T ss_dssp TCCCCEEEEEEEEESSSC
T ss_pred CCCEeEEEEEEECCCCCc
Confidence 567899999999998765
No 9
>2csu_A 457AA long hypothetical protein; structural genomics, PH0766, riken ST genomics/proteomics initiative, RSGI, NPPSFA; 2.20A {Pyrococcus horikoshii} SCOP: c.2.1.8 c.23.4.1 c.23.4.1
Probab=33.79 E-value=16 Score=25.37 Aligned_cols=43 Identities=14% Similarity=0.176 Sum_probs=38.2
Q ss_pred CCCceEEEeecCCCCChHHHHHHHHHhCCCCCCCCcHHHHhhC
Q psy4851 15 RYPQGHFVRALGPIGDKDTENEVLLLEHDVPHSKFSDLVLSYL 57 (62)
Q Consensus 15 ~~P~G~iv~~LG~~gd~e~E~~aIL~e~~i~~~~F~~~vl~~l 57 (62)
+.|.|.-+-++.+.|..-..+.-.+.++|+...+||++..+.|
T Consensus 289 ~~~~g~rvaiitngGG~~~laaD~~~~~Gl~l~~l~~~t~~~L 331 (457)
T 2csu_A 289 PLPRGNKVAIMTNAGGPGVLTADELDKRGLKLATLEEKTIEEL 331 (457)
T ss_dssp CCCSSSEEEEEESCHHHHHHHHHHHHTTTCEECCCCHHHHHHH
T ss_pred CCCCCCcEEEEECCHHHHHHHHHHHHHcCCCCCCCCHHHHHHH
Confidence 4567999999999999999999999999999888999887654
No 10
>2a7y_A Hypothetical protein RV2302/MT2359; anti-parallel beta sheet, structural genomics, PSI, protein structure initiative; NMR {Mycobacterium tuberculosis} SCOP: b.34.6.3
Probab=31.34 E-value=26 Score=19.57 Aligned_cols=14 Identities=7% Similarity=0.190 Sum_probs=12.2
Q ss_pred ceEEEeecCCCCCh
Q psy4851 18 QGHFVRALGPIGDK 31 (62)
Q Consensus 18 ~G~iv~~LG~~gd~ 31 (62)
.|.|+++.|..|++
T Consensus 25 ~GeIvEV~g~dG~P 38 (83)
T 2a7y_A 25 HAEIIEVRSADGSP 38 (83)
T ss_dssp EEEEEECSCSSSCS
T ss_pred EEEEEEEECCCCCC
Confidence 59999999998865
No 11
>2juc_A PRE-mRNA-splicing factor URN1; FF, helical bundle, solution, mRNA processing, nucleus, spliceosome, unknown function; NMR {Saccharomyces cerevisiae}
Probab=31.24 E-value=25 Score=18.31 Aligned_cols=16 Identities=13% Similarity=-0.074 Sum_probs=13.6
Q ss_pred ChHHHHHHHHHhCCCC
Q psy4851 30 DKDTENEVLLLEHDVP 45 (62)
Q Consensus 30 d~e~E~~aIL~e~~i~ 45 (62)
|..+....+|.+++|.
T Consensus 7 d~k~~F~~LL~e~~In 22 (59)
T 2juc_A 7 DERNIFFELFDRYKLD 22 (59)
T ss_dssp SSHHHHHHHHHHTTCC
T ss_pred HHHHHHHHHHHHcCCC
Confidence 4568899999999986
No 12
>2eqn_A Hypothetical protein LOC92345; NAF1 domain, hypothetical protein BC008207 [HOMO sapiens], structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=31.17 E-value=26 Score=19.84 Aligned_cols=18 Identities=22% Similarity=0.512 Sum_probs=15.6
Q ss_pred CCCCceEEEeecCCCCCh
Q psy4851 14 MRYPQGHFVRALGPIGDK 31 (62)
Q Consensus 14 s~~P~G~iv~~LG~~gd~ 31 (62)
++.+.|+|.+++|+..++
T Consensus 60 dk~~IGkV~EiFGpV~~P 77 (103)
T 2eqn_A 60 DRQAAGKIFEIFGPVAHP 77 (103)
T ss_dssp TSBEEEEEEEEESCSSSC
T ss_pred CCcEEEEEEEEECCCCCC
Confidence 578899999999998765
No 13
>3urg_A ALR1010 protein, CCBP; calcium binding protein, metal binding protein; HET: MNB; 2.00A {Nostoc} PDB: 2k2v_A 2p0p_A 2p0q_A
Probab=27.89 E-value=30 Score=21.19 Aligned_cols=31 Identities=16% Similarity=0.080 Sum_probs=26.2
Q ss_pred EEEEEeecCCCCCCCCceEEEeecCCCCChHH
Q psy4851 2 IFALIKPLIIHHMRYPQGHFVRALGPIGDKDT 33 (62)
Q Consensus 2 ~~a~I~~W~~~~s~~P~G~iv~~LG~~gd~e~ 33 (62)
|-|+...+.. .|..=.|.-|+++|.+.+-+.
T Consensus 64 F~A~~~~~~~-~spL~ege~V~Vvgma~~D~c 94 (146)
T 3urg_A 64 FMGKWKKKSR-KTSTIEEKTVEVLGMAPDDEC 94 (146)
T ss_dssp EEEEEEEEET-TTTEEEEEEEEEEEECCGGGT
T ss_pred eEEEEehhhc-cCCCCCCCEEEEEEecCcccc
Confidence 6788888987 889999999999998876553
No 14
>2au5_A Conserved domain protein; structural genomics, PSI, protein STR initiative, midwest center for structural genomics, MCSG, U function; 2.10A {Enterococcus faecalis} SCOP: a.244.1.1
Probab=27.26 E-value=14 Score=22.18 Aligned_cols=13 Identities=38% Similarity=0.554 Sum_probs=10.6
Q ss_pred CCCcHHHHhhCCC
Q psy4851 47 SKFSDLVLSYLPP 59 (62)
Q Consensus 47 ~~F~~~vl~~lp~ 59 (62)
+.|+|+||+.+..
T Consensus 41 S~F~P~VL~~ME~ 53 (139)
T 2au5_A 41 SHFSPIVLAEMEK 53 (139)
T ss_dssp TTCCHHHHHHHHH
T ss_pred ccCCHHHHHHHhh
Confidence 3599999998865
No 15
>1wr2_A Hypothetical protein PH1789; structural genomics, NPPSFA, national on protein structural and functional analyses; 2.00A {Pyrococcus horikoshii}
Probab=27.12 E-value=47 Score=20.41 Aligned_cols=20 Identities=15% Similarity=0.099 Sum_probs=17.1
Q ss_pred ChHHHHHHHHHhCCCCCCCC
Q psy4851 30 DKDTENEVLLLEHDVPHSKF 49 (62)
Q Consensus 30 d~e~E~~aIL~e~~i~~~~F 49 (62)
=.+.+++.+|.+|||+..+|
T Consensus 20 l~k~~~k~ll~~~GIp~p~~ 39 (238)
T 1wr2_A 20 MVEYEAKQVLKAYGLPVPEE 39 (238)
T ss_dssp ECHHHHHHHHHTTTCCCCCC
T ss_pred CCHHHHHHHHHHcCcCCCCe
Confidence 35789999999999998765
No 16
>1ny4_A 30S ribosomal protein S28E; JR19, structure, autostructure, northeast structural genomics consortium, PSI, protein structure initiative; NMR {Pyrococcus horikoshii} SCOP: b.40.4.5
Probab=26.70 E-value=39 Score=18.78 Aligned_cols=13 Identities=15% Similarity=0.463 Sum_probs=11.2
Q ss_pred ceEEEeecCCCCC
Q psy4851 18 QGHFVRALGPIGD 30 (62)
Q Consensus 18 ~G~iv~~LG~~gd 30 (62)
.++++++||..|.
T Consensus 8 ~A~VikVlGRTGs 20 (82)
T 1ny4_A 8 PAEVIEIIGRTGT 20 (82)
T ss_dssp EEEEEEECCCCCS
T ss_pred eEEEEEEeCcccC
Confidence 5999999998775
No 17
>2yy0_A C-MYC-binding protein; conserved hypothetical protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.40A {Homo sapiens}
Probab=26.70 E-value=22 Score=17.97 Aligned_cols=25 Identities=28% Similarity=0.321 Sum_probs=9.6
Q ss_pred ceEEEeecCCCCChHHHHHHHHHhC
Q psy4851 18 QGHFVRALGPIGDKDTENEVLLLEH 42 (62)
Q Consensus 18 ~G~iv~~LG~~gd~e~E~~aIL~e~ 42 (62)
.--|-+.||..|-...|.+++..|+
T Consensus 4 lefIk~~LG~~~p~~~d~eaLk~E~ 28 (53)
T 2yy0_A 4 LDFLKHHLGAATPENPEIELLRLEL 28 (53)
T ss_dssp ------------CCCHHHHHHHHHH
T ss_pred HHHHHHHcCCCCCChhhHHHHHHHH
Confidence 3446778997677777777787764
No 18
>1ne3_A 30S ribosomal protein S28E; beta protein, structural genomics, OCSP, NESG, protein structure initiative, PSI; NMR {Methanothermococcusthermolithotrophicus} SCOP: b.40.4.5
Probab=26.36 E-value=37 Score=18.25 Aligned_cols=13 Identities=15% Similarity=0.243 Sum_probs=10.9
Q ss_pred ceEEEeecCCCCC
Q psy4851 18 QGHFVRALGPIGD 30 (62)
Q Consensus 18 ~G~iv~~LG~~gd 30 (62)
.++++++||..|.
T Consensus 6 ~A~V~kVlGRTGs 18 (68)
T 1ne3_A 6 PAEVIEVLKRTGM 18 (68)
T ss_dssp EEEEEEEECCSSS
T ss_pred EEEEEEEeCcccC
Confidence 4899999998775
No 19
>2hvy_B GAR1, small nucleolar RNP similar to GAR1; H/ACA RNA, RNP, pseudouridine synthase, guide RNA, isomerase biosynthetic protein-RNA complex; HET: ATP; 2.30A {Pyrococcus furiosus} SCOP: b.43.3.5 PDB: 3hay_B*
Probab=24.10 E-value=33 Score=19.68 Aligned_cols=18 Identities=17% Similarity=0.119 Sum_probs=15.4
Q ss_pred CCCCceEEEeecCCCCCh
Q psy4851 14 MRYPQGHFVRALGPIGDK 31 (62)
Q Consensus 14 s~~P~G~iv~~LG~~gd~ 31 (62)
++...|+|.+++|+..++
T Consensus 41 nk~~IGKV~DIfGPV~~p 58 (104)
T 2hvy_B 41 RLQFVGIVKDVFGPVKMP 58 (104)
T ss_dssp TCCEEEEEEEEEEESSSC
T ss_pred CCCEeEEEEEEECCCCCc
Confidence 567899999999998775
No 20
>1y1l_A Arsenate reductase (ARSC); detoxification, cadmium, oxidized form, structural genomics, PSI, protein structure initiative; 2.80A {Archaeoglobus fulgidus} SCOP: c.44.1.1
Probab=23.14 E-value=38 Score=19.13 Aligned_cols=23 Identities=22% Similarity=0.127 Sum_probs=18.3
Q ss_pred CChHHHHHHHHHhCCCCCCCCcHH
Q psy4851 29 GDKDTENEVLLLEHDVPHSKFSDL 52 (62)
Q Consensus 29 gd~e~E~~aIL~e~~i~~~~F~~~ 52 (62)
+.++..+.++|.++||+ +.+...
T Consensus 38 ~~~~~~a~~~l~e~Gid-s~~~sr 60 (124)
T 1y1l_A 38 ERVDETVKRLLAERGLK-AKEKPR 60 (124)
T ss_dssp SSCCHHHHHHHHTTTCC-CCSSCC
T ss_pred CCCCHHHHHHHHHcCcC-CCCccc
Confidence 45888999999999999 665433
No 21
>2v3m_A NAF1; ribosomal protein, GAR1, snoRNP, phosphorylation, hypothetical protein; 2.74A {Saccharomyces cerevisiae}
Probab=22.61 E-value=32 Score=20.41 Aligned_cols=18 Identities=22% Similarity=0.427 Sum_probs=15.8
Q ss_pred CCCCceEEEeecCCCCCh
Q psy4851 14 MRYPQGHFVRALGPIGDK 31 (62)
Q Consensus 14 s~~P~G~iv~~LG~~gd~ 31 (62)
.+.+.|+|-+++|+..++
T Consensus 67 dr~~IGkV~EiFGpV~~P 84 (131)
T 2v3m_A 67 DRTLIGMLTEVFGPLQNP 84 (131)
T ss_dssp TCCEEEECCEEESCSSSC
T ss_pred CCcEEEEEEEEeCCCCCc
Confidence 578999999999998775
No 22
>1eik_A RNA polymerase subunit RPB5; RPBH, OCSP, NESG, protein structure initiative, structural genomics, PSI; NMR {Methanothermobacterthermautotrophicus} SCOP: d.78.1.1
Probab=22.26 E-value=81 Score=17.11 Aligned_cols=19 Identities=21% Similarity=0.331 Sum_probs=15.4
Q ss_pred HHHHHHHHHhCCCCCCCCc
Q psy4851 32 DTENEVLLLEHDVPHSKFS 50 (62)
Q Consensus 32 e~E~~aIL~e~~i~~~~F~ 50 (62)
+.|.+.+|.+|++....+|
T Consensus 19 ~eEk~~lL~~y~i~~~qLP 37 (77)
T 1eik_A 19 ESEAKRVLKELDAHPEQLP 37 (77)
T ss_dssp HHHHHHHHHHTTCCTTTSC
T ss_pred HHHHHHHHHHcCCCHHHCC
Confidence 6789999999999865543
No 23
>1taf_A TFIID TBP associated factor 42; transcription initiation, histone fold, complex (TWO transcr factors); 2.00A {Drosophila melanogaster} SCOP: a.22.1.3
Probab=21.77 E-value=44 Score=17.64 Aligned_cols=21 Identities=24% Similarity=0.287 Sum_probs=16.1
Q ss_pred HHHHHHhCCCCCCCCcHHHHhhC
Q psy4851 35 NEVLLLEHDVPHSKFSDLVLSYL 57 (62)
Q Consensus 35 ~~aIL~e~~i~~~~F~~~vl~~l 57 (62)
+..||.+.|+. .|++.|..+|
T Consensus 7 i~~iLk~~G~~--~~~~~v~~~L 27 (68)
T 1taf_A 7 IMSILKELNVQ--EYEPRVVNQL 27 (68)
T ss_dssp HHHHHHHTTCC--CBCTHHHHHH
T ss_pred HHHHHHHCCCc--ccCHHHHHHH
Confidence 56799999996 4888876654
No 24
>3ufx_B Succinyl-COA synthetase beta subunit; ATP-grAsp fold, ligase; HET: GDP; 2.35A {Thermus aquaticus}
Probab=20.44 E-value=57 Score=22.26 Aligned_cols=19 Identities=16% Similarity=0.170 Sum_probs=16.3
Q ss_pred hHHHHHHHHHhCCCCCCCC
Q psy4851 31 KDTENEVLLLEHDVPHSKF 49 (62)
Q Consensus 31 ~e~E~~aIL~e~~i~~~~F 49 (62)
.|.+.+.+|.+|||+..+|
T Consensus 4 ~E~~aK~lL~~~GIpvp~~ 22 (397)
T 3ufx_B 4 HEYQAKEILARYGVPVPPG 22 (397)
T ss_dssp CHHHHHHHHHHTTCCCCCE
T ss_pred CHHHHHHHHHHCCCCCCCe
Confidence 4678999999999998765
Done!