RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy4851
         (62 letters)



>d2vnud1 b.40.4.5 (D:400-494) Exosome complex exonuclease RRP44
          {Saccharomyces cerevisiae [TaxId: 4932]}
          Length = 95

 Score = 49.5 bits (118), Expect = 1e-10
 Identities = 19/32 (59%), Positives = 21/32 (65%)

Query: 15 RYPQGHFVRALGPIGDKDTENEVLLLEHDVPH 46
          +YP GHFVR LG I     E E LLLEHDV +
Sbjct: 62 KYPLGHFVRDLGTIESAQAETEALLLEHDVEY 93


>d2r7da2 b.40.4.16 (A:3-403) Ribonuclease II family protein DR0020
          {Deinococcus radiodurans [TaxId: 1299]}
          Length = 401

 Score = 33.0 bits (74), Expect = 9e-04
 Identities = 8/50 (16%), Positives = 19/50 (38%), Gaps = 2/50 (4%)

Query: 15 RYPQGHFVRALGPIGDKDTENEVLLLEH--DVPHSKFSDLVLSYLPPMPW 62
          R  +   +R L      +  + +LL     D   + ++D + + L  +  
Sbjct: 19 RADKSRVLRDLKLPETPEAAHALLLRLGVWDEARTPYADRLRAALNAVEL 68


>d2ix0a1 b.40.4.5 (A:83-172) Exoribonuclease 2, RNB {Escherichia
          coli [TaxId: 562]}
          Length = 90

 Score = 27.5 bits (61), Expect = 0.050
 Identities = 5/33 (15%), Positives = 9/33 (27%)

Query: 13 HMRYPQGHFVRALGPIGDKDTENEVLLLEHDVP 45
            R       + +    D      V L  H++ 
Sbjct: 57 GDRSFYAELTQYITFGDDHFVPWWVTLARHNLE 89


>d1giqa2 d.166.1.1 (A:210-413) Enzymatic component (Ia) of
           iota-toxin {Clostridium perfringens [TaxId: 1502]}
          Length = 204

 Score = 27.0 bits (59), Expect = 0.10
 Identities = 13/40 (32%), Positives = 15/40 (37%), Gaps = 4/40 (10%)

Query: 10  IIHHMRYPQGHFVRALGPIGDKDTENEVLLLEHDVPHSKF 49
           II  +  P+      L  I     E EVLL       SKF
Sbjct: 145 IILRINIPKDSPGAYLSAIPGYAGEYEVLLN----HGSKF 180


>d1qs1a2 d.166.1.1 (A:265-461) Vegetative insecticidal protein 2
           (VIP2) {Bacillus cereus [TaxId: 1396]}
          Length = 197

 Score = 25.9 bits (56), Expect = 0.25
 Identities = 14/48 (29%), Positives = 21/48 (43%), Gaps = 4/48 (8%)

Query: 2   IFALIKPLIIHHMRYPQGHFVRALGPIGDKDTENEVLLLEHDVPHSKF 49
           + A     II  ++ P+G     L  IG   +E E+LL       SK+
Sbjct: 130 LAAFGSRKIILRLQVPKGSTGAYLSAIGGFASEKEILLD----KDSKY 173


>d2c8aa1 d.166.1.1 (A:45-251) Exoenzyme c3 {Clostridium botulinum
           [TaxId: 1491]}
          Length = 207

 Score = 25.8 bits (56), Expect = 0.27
 Identities = 10/40 (25%), Positives = 16/40 (40%), Gaps = 4/40 (10%)

Query: 10  IIHHMRYPQGHFVRALGPIGDKDTENEVLLLEHDVPHSKF 49
           II   +  +G     + PI     + E+LL      HS +
Sbjct: 144 IITKFKVAKGSKAGYIDPISAFAGQLEMLLP----RHSTY 179


>d1r45a_ d.166.1.1 (A:) Exoenzyme c3 {Clostridium botulinum C
           bacteriophage [TaxId: 12336]}
          Length = 201

 Score = 25.1 bits (54), Expect = 0.62
 Identities = 7/27 (25%), Positives = 10/27 (37%)

Query: 13  HMRYPQGHFVRALGPIGDKDTENEVLL 39
             +   G     + PI     + EVLL
Sbjct: 147 KFKVTNGSKGGYIDPISYFPGQLEVLL 173


>d1r7ma2 d.95.2.1 (A:121-225) DNA endonuclease I-SceI {Baker's yeast
           (Saccharomyces cerevisiae) [TaxId: 4932]}
          Length = 105

 Score = 21.7 bits (46), Expect = 8.7
 Identities = 7/15 (46%), Positives = 9/15 (60%)

Query: 2   IFALIKPLIIHHMRY 16
            + LIKP +I  M Y
Sbjct: 88  FYNLIKPYLIPQMMY 102


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.326    0.146    0.473 

Gapped
Lambda     K      H
   0.267   0.0602    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 239,878
Number of extensions: 8178
Number of successful extensions: 30
Number of sequences better than 10.0: 1
Number of HSP's gapped: 30
Number of HSP's successfully gapped: 8
Length of query: 62
Length of database: 2,407,596
Length adjustment: 32
Effective length of query: 30
Effective length of database: 1,968,236
Effective search space: 59047080
Effective search space used: 59047080
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 47 (22.2 bits)