Query psy4854
Match_columns 555
No_of_seqs 449 out of 3290
Neff 7.8
Searched_HMMs 46136
Date Fri Aug 16 19:21:43 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy4854.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/4854hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG2844|consensus 100.0 3.8E-80 8.3E-85 648.4 24.5 392 139-535 390-839 (856)
2 COG0404 GcvT Glycine cleavage 100.0 1.3E-63 2.8E-68 516.4 31.3 335 193-532 2-361 (379)
3 PLN02319 aminomethyltransferas 100.0 8.3E-60 1.8E-64 500.3 32.9 340 190-533 26-388 (404)
4 PRK13579 gcvT glycine cleavage 100.0 6E-57 1.3E-61 474.0 31.4 330 191-533 4-356 (370)
5 PRK12486 dmdA putative dimethy 100.0 3.6E-56 7.8E-61 466.6 30.7 325 193-533 8-360 (368)
6 TIGR00528 gcvT glycine cleavag 100.0 3E-54 6.4E-59 452.8 30.5 329 196-533 1-351 (361)
7 PRK00389 gcvT glycine cleavage 100.0 1.3E-53 2.8E-58 448.1 31.9 324 196-532 2-345 (359)
8 TIGR01372 soxA sarcosine oxida 100.0 7.2E-54 1.6E-58 499.8 32.5 351 193-546 593-983 (985)
9 KOG2770|consensus 100.0 8.6E-51 1.9E-55 398.0 25.5 339 193-534 22-386 (401)
10 PF01571 GCV_T: Aminomethyltra 100.0 7.1E-36 1.5E-40 290.6 22.9 198 242-447 1-211 (211)
11 PRK09559 putative global regul 100.0 1.8E-31 4E-36 276.1 24.5 216 240-473 19-253 (327)
12 KOG2770|consensus 99.9 9.1E-25 2E-29 215.2 13.0 119 3-121 280-400 (401)
13 COG0354 Predicted aminomethylt 99.9 1.9E-23 4.2E-28 211.3 15.0 221 235-488 9-250 (305)
14 COG0404 GcvT Glycine cleavage 99.9 5.2E-23 1.1E-27 213.9 14.3 116 3-121 259-377 (379)
15 PLN02319 aminomethyltransferas 99.9 1.5E-22 3.3E-27 215.3 15.2 119 3-121 285-403 (404)
16 PF08669 GCV_T_C: Glycine clea 99.9 5.2E-22 1.1E-26 168.4 13.1 93 19-111 1-95 (95)
17 PRK13579 gcvT glycine cleavage 99.9 3.4E-22 7.4E-27 210.5 14.7 118 3-120 252-370 (370)
18 PRK12486 dmdA putative dimethy 99.8 1.8E-20 4E-25 196.8 13.6 109 3-114 257-368 (368)
19 KOG2844|consensus 99.8 1.9E-19 4.1E-24 191.3 8.9 184 331-555 515-708 (856)
20 TIGR00528 gcvT glycine cleavag 99.8 1.1E-18 2.4E-23 183.4 14.3 111 4-115 248-360 (361)
21 TIGR01375 soxG sarcosine oxida 99.8 2.4E-18 5.2E-23 158.6 14.0 117 293-418 33-151 (152)
22 PRK00389 gcvT glycine cleavage 99.7 2.7E-17 5.8E-22 173.0 14.5 109 3-117 248-357 (359)
23 TIGR01372 soxA sarcosine oxida 99.7 3.9E-17 8.4E-22 191.7 14.1 115 4-121 861-983 (985)
24 KOG2929|consensus 99.7 9.6E-16 2.1E-20 150.4 13.4 205 241-474 31-267 (348)
25 PF01571 GCV_T: Aminomethyltra 99.4 6.5E-13 1.4E-17 129.1 7.7 175 336-555 1-184 (211)
26 PF04268 SoxG: Sarcosine oxida 99.2 2.6E-10 5.7E-15 104.2 11.7 133 259-416 10-144 (147)
27 COG4583 Sarcosine oxidase gamm 99.0 2.8E-09 6E-14 98.6 11.6 114 293-417 69-184 (189)
28 TIGR01375 soxG sarcosine oxida 98.8 3.6E-08 7.8E-13 90.9 10.2 137 355-540 10-148 (152)
29 PRK09559 putative global regul 98.7 8.3E-08 1.8E-12 99.7 11.5 105 4-114 213-324 (327)
30 TIGR03317 ygfZ_signature folat 98.3 9.4E-08 2E-12 75.3 0.1 41 432-472 17-66 (67)
31 TIGR03317 ygfZ_signature folat 97.9 1.7E-05 3.6E-10 62.5 4.1 37 4-43 27-66 (67)
32 COG0354 Predicted aminomethylt 97.4 0.00018 3.8E-09 73.6 5.2 98 10-120 201-301 (305)
33 PF04268 SoxG: Sarcosine oxida 97.3 0.0018 4E-08 59.2 10.4 84 235-324 59-145 (147)
34 COG4583 Sarcosine oxidase gamm 96.8 0.0056 1.2E-07 57.2 8.3 83 236-324 99-184 (189)
35 PF08669 GCV_T_C: Glycine clea 96.2 0.0057 1.2E-07 51.4 4.3 76 454-532 3-89 (95)
36 PF10396 TrmE_N: GTP-binding p 95.0 0.23 5E-06 43.2 9.7 62 246-310 12-80 (114)
37 KOG2929|consensus 94.5 0.054 1.2E-06 54.5 5.1 96 10-116 234-338 (348)
38 PF10396 TrmE_N: GTP-binding p 92.7 1.2 2.7E-05 38.7 9.8 73 343-418 13-97 (114)
39 COG0486 ThdF Predicted GTPase 89.6 0.71 1.5E-05 49.4 6.2 52 247-299 18-69 (454)
40 COG0486 ThdF Predicted GTPase 78.4 8.1 0.00018 41.6 8.0 74 344-418 19-104 (454)
41 PF06978 POP1: Ribonucleases P 73.3 4.9 0.00011 38.3 4.3 58 198-256 130-187 (187)
42 PF02470 MCE: mce related prot 71.1 40 0.00088 26.9 8.8 46 42-88 7-53 (81)
43 TIGR00450 mnmE_trmE_thdF tRNA 70.3 9.3 0.0002 41.5 6.3 53 246-299 7-59 (442)
44 PRK05291 trmE tRNA modificatio 59.1 30 0.00066 37.6 7.6 72 344-417 19-101 (449)
45 TIGR00450 mnmE_trmE_thdF tRNA 59.0 40 0.00086 36.7 8.5 75 343-418 8-94 (442)
46 PRK05291 trmE tRNA modificatio 53.7 22 0.00047 38.8 5.4 51 246-299 17-67 (449)
47 PRK10807 paraquat-inducible pr 53.1 43 0.00093 37.5 7.7 56 42-98 48-108 (547)
48 PF14578 GTP_EFTU_D4: Elongati 50.5 13 0.00029 30.3 2.3 51 38-102 20-70 (81)
49 PF13953 PapC_C: PapC C-termin 44.5 45 0.00097 25.9 4.5 46 45-102 7-52 (68)
50 PF11834 DUF3354: Domain of un 39.4 49 0.0011 26.1 3.9 44 256-306 25-68 (69)
51 KOG3322|consensus 28.8 55 0.0012 37.0 3.5 41 61-101 643-683 (688)
52 PF12396 DUF3659: Protein of u 27.9 53 0.0012 25.5 2.4 28 49-76 9-36 (64)
53 KOG0695|consensus 25.1 64 0.0014 33.5 3.0 48 130-180 424-474 (593)
54 TIGR01377 soxA_mon sarcosine o 24.5 47 0.001 34.7 2.1 25 139-163 349-373 (380)
55 PF05239 PRC: PRC-barrel domai 24.1 1.4E+02 0.003 23.4 4.3 36 51-86 10-45 (79)
56 PF00673 Ribosomal_L5_C: ribos 21.6 66 0.0014 27.0 2.0 40 250-289 5-44 (95)
57 PF09939 DUF2171: Uncharacteri 21.0 1E+02 0.0022 24.2 2.7 21 49-69 2-22 (67)
58 PF08170 POPLD: POPLD (NUC188) 20.6 1.2E+02 0.0026 25.2 3.4 35 396-431 1-35 (92)
No 1
>KOG2844|consensus
Probab=100.00 E-value=3.8e-80 Score=648.42 Aligned_cols=392 Identities=19% Similarity=0.251 Sum_probs=364.9
Q ss_pred hhHHHHHHHHcCCCCCcccccccCC-CCCCCCchhhhhhccccccc----cccCCCCCCCCCCCCCcChHHHHHCCCEEE
Q psy4854 139 VGVELWVRVRDKRVDVKVTKMPFLK-SNYHTPPKYFLKFLSFFSGL----TFVFSPGSSPSAEQRTPLYDLHLSHGGKMV 213 (555)
Q Consensus 139 ~g~~~a~~~~~g~~~~~~~~~d~~r-~~~~~~~~~~~~~~~e~~~~----~~p~~~~~~~r~~r~spl~~~~~~~gA~f~ 213 (555)
.|++||+||++|+|+.||+.+|++| +++|+|+.|+++|++|+|+. .||++|+.+||++|+||||+++.++||+|+
T Consensus 390 ~Gk~la~wi~~g~p~~d~~~~D~~Rf~~~~~~~~~lr~r~~Es~~~nys~~yp~~e~~agRnlR~sply~~L~~aGav~~ 469 (856)
T KOG2844|consen 390 CGKYLAEWIIHGQPPLDVHELDLRRFGKLQTNRYFLRERAHESYGKNYSVVYPKEEFQAGRNLRMSPLYDRLESAGAVFG 469 (856)
T ss_pred hhHHHHHHhhcCCCCccchhccHHHhhhhhcccHHHhhhchhhhhcccccccchhhhccccccccCccHHHHHhcccchh
Confidence 6799999999999999999999999 99999999999999998555 499999999999999999999999999999
Q ss_pred eeCCcccccccCC----------------------CChHHHHHHHhcCcEEEecCCceEEEEEcccHHHHHhhccccCCC
Q psy4854 214 PFAGFSMPVQYGA----------------------VSITASHLHTRSKVSVFDVSHMLQTVVTGKHREEWLESICVADVH 271 (555)
Q Consensus 214 ~~~g~e~p~~f~~----------------------~~~~~E~~a~r~~v~l~DlS~~~~i~v~G~da~~fLq~l~t~dv~ 271 (555)
+.+|||||.||.+ +.+..||+|||+.|+++|||+|+|+.|+|+||.++||+||++||+
T Consensus 470 e~~G~ERP~~F~~~~kd~~~~~~~q~~tf~kp~wfd~V~SE~~acrerv~v~DmS~F~Kf~i~G~da~e~ld~LfSanv~ 549 (856)
T KOG2844|consen 470 EKHGWERPGWFYPPGKDDQYLPYGQDSTFRKPEWFDPVGSEYKACRERVGVFDMSSFGKFDITGQDAVELLDYLFSANVD 549 (856)
T ss_pred hhccccCCCccCCCChhhhcccccccccccCCcchhhhHHHHHHHHhhceEeeccccceeeeccHHHHHHHHHHhhcCCC
Confidence 9999999999964 469999999999999999999999999999999999999999999
Q ss_pred CCCCCceEEeeeecCCcceEEEEEEEEecCCeEEEEecccchHHHHHHHHHHHhhhccCCCCEEEEEccCCCeEEEEEcC
Q psy4854 272 ELDPGKGTLSLFTNEQGGIQDDLIVTKTLEDSLFLVSNASRRKVDMDLMVAAQDRFKSLGKDIHLQFLSAEERGLIAVQG 351 (555)
Q Consensus 272 ~l~~G~~~yt~~ln~~G~i~~d~~v~r~~~d~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~V~i~dvs~~~~~~i~v~G 351 (555)
. ++|+++||+|||++|++++||+|.|+++++|+|++++.++.+++.||+++++. .+++|.+.|+| ++++.|+|+|
T Consensus 550 ~-~vg~tv~T~mln~~Gg~e~D~tvsrl~~~~f~mia~t~qq~~~~~wi~k~~~~---~~~~v~l~DvT-~~~~~l~i~G 624 (856)
T KOG2844|consen 550 V-PVGSTVYTGMLNPKGGYEADCTVSRLSPRGFFMIAGTIQQLHDLSWIKKEMPK---GGSNVELKDVT-DELGALSIIG 624 (856)
T ss_pred C-CCCceeeeeeecCCCCeEeeeeeeeecCCceEEEccchhhhhhHHHHHHHhhc---cCCceeeeech-hhhceeeecC
Confidence 6 99999999999999999999999999999999999999999999999999975 37899999999 6789999999
Q ss_pred CCHHHHHhhccccCCCC--CcccceEeeeecCccEEEEecCccCCCeEEEEecCCcHHHHHHHHHcCCC---eeecCchh
Q psy4854 352 PLSSTILQRHTDLDLSS--LYFMTSRPCTIAGIPCTLTRAGYTGEDGVEISVPGEQCTHIVEALLSDED---VKLAGLGA 426 (555)
Q Consensus 352 P~A~~vL~~l~~~dl~~--l~~~~~~~~~i~g~~v~i~R~~~~ge~G~eL~~~~~~a~~l~~~L~~ag~---~~~~G~~a 426 (555)
|.|+.+|++|++.|+++ ||++++++..++++.++++|++|+||+|||||+|.+++.+||++||+||+ +.++|++|
T Consensus 625 P~sR~vLqelt~~dls~~~fp~~~~k~l~vg~~girairis~~GELG~~Lyip~e~~~~vY~~im~AG~~~~l~naGyya 704 (856)
T KOG2844|consen 625 PQSRKVLQELTDADLSDDHFPFLTTKELKVGNAGIRAIRISHTGELGWELYIPNEDAVAVYRAIMNAGQEEGLQNAGYYA 704 (856)
T ss_pred chHHHHHHhccCCCCCccccCcceeeeeeccccceEEEEEEeccccceEEEechHHHHHHHHHHHhhhhhhccccchhHH
Confidence 99999999999999985 99999999999999999999999999999999999999999999999998 99999999
Q ss_pred hHhhh---------ccCCCC-CCcccccccccccccc--cCCceeEEecc-C---CcEEEEEEeec-C-cc--ceEeecc
Q psy4854 427 RDSLS---------GDITLN-TPVPHGSLKLSNDRFK--SLGKDIHLQFL-S---PEERGLIAVQG-P-LS--STILQRH 486 (555)
Q Consensus 427 ~~~lR---------~dl~~~-~P~E~gl~~~v~~~K~--~iG~eal~~~~-~---~~lv~l~~~~g-p-~a--~~v~~~~ 486 (555)
+++|| +||+++ ||+|||+.|.|+|+|+ |||++|+.+|+ + ||+|.|++++. | ++ ++|++++
T Consensus 705 ~~aLriEK~y~~Wg~dl~~d~tPlEaGl~f~vk~k~p~dFiGk~ALeqqra~GlkkrlV~l~l~d~d~~~~G~E~I~rnG 784 (856)
T KOG2844|consen 705 LRALRIEKFYRAWGQDLNPDTTPLEAGLEFRVKLKKPADFIGKQALEQQKAEGLKKRLVCLTLDDHDPDPWGGEPIYRNG 784 (856)
T ss_pred HHHHHHHHHHHhhccccCCCCChhhccceeEEecCCCccchhHHHHHHHHHhhhhheEEEEEecCCCCCccCCcceeeCC
Confidence 99999 999999 9999999999999986 59999999887 3 99999999655 5 34 9999988
Q ss_pred ccc-ceee--EEEEeeeeecccCee---EEEEeccccCCceEEEEeCCcchHHHH
Q psy4854 487 TDL-DLSS--LYFMTSRPCTIAGIP---CTLTRAGYTGEDGVEISVPGEQCTHIV 535 (555)
Q Consensus 487 ~~~-~~t~--~~~~~~~~~~~~~i~---~~~~r~~y~ge~g~EI~i~~~~~~~v~ 535 (555)
..+ .+++ .+|+..+++|+|+|+ -..+..+|++...|||++.+.++++..
T Consensus 785 ~~VG~ttsa~Y~ytl~k~v~~gyV~n~~e~~V~~d~V~sg~yEvdi~Gkry~a~~ 839 (856)
T KOG2844|consen 785 QVVGNTTSAAYGYTLGKSVCLGYVHNFEEFPVSLDFVGSGEYEVDIAGKRYPAKA 839 (856)
T ss_pred EEEeeeeeccceeeecceEEEEEecccccCccCHHHhcCCcEEEEecccccceeE
Confidence 765 3444 578888999999987 456788999999999999999888643
No 2
>COG0404 GcvT Glycine cleavage system T protein (aminomethyltransferase) [Amino acid transport and metabolism]
Probab=100.00 E-value=1.3e-63 Score=516.43 Aligned_cols=335 Identities=33% Similarity=0.513 Sum_probs=294.8
Q ss_pred CCCCCCCcChHHHHHCCCEEEeeCCcccccccCCCChHHHHHHHhcCcEEEecCCceEEEEEcccHHHHHhhccccCCCC
Q psy4854 193 PSAEQRTPLYDLHLSHGGKMVPFAGFSMPVQYGAVSITASHLHTRSKVSVFDVSHMLQTVVTGKHREEWLESICVADVHE 272 (555)
Q Consensus 193 ~r~~r~spl~~~~~~~gA~f~~~~g~e~p~~f~~~~~~~E~~a~r~~v~l~DlS~~~~i~v~G~da~~fLq~l~t~dv~~ 272 (555)
++++|+||||++|.++||+|++++||+||.||+. ++.+||+|+|++|||||+|||++++|+||||.+|||++++||+++
T Consensus 2 ~~~~r~tpl~~~~~~~GA~~~~~~Gw~~p~~y~~-~v~~Eh~avR~~aGlfDvShmgk~~V~GpdA~~~L~~l~~ndv~k 80 (379)
T COG0404 2 ARPLKRTPLYDRHKALGAVFGEFGGWEMPVWYAK-SVMEEHLAVREAAGLFDVSHMGKVEVSGPDAAAFLQRLLTNDVSK 80 (379)
T ss_pred CccccccchHHHHHhcCCEEEeeCCEecceecCc-cHHHHHHHHHhcCceEeccCceEEEEECCCHHHHHHHHcccccCc
Confidence 6889999999999999999999999999999995 699999999999999999999999999999999999999999999
Q ss_pred CCCCceEEeeeecCCcceEEEEEEEEecCCeEEEEecccchHHHHHHHHHHHhhhccCCCCEEEEEccCCCeEEEEEcCC
Q psy4854 273 LDPGKGTLSLFTNEQGGIQDDLIVTKTLEDSLFLVSNASRRKVDMDLMVAAQDRFKSLGKDIHLQFLSAEERGLIAVQGP 352 (555)
Q Consensus 273 l~~G~~~yt~~ln~~G~i~~d~~v~r~~~d~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~V~i~dvs~~~~~~i~v~GP 352 (555)
+++|+++||+|||++|+|++|++|+|++||+|+|+++++..+++++||++++.. .+.+|+++++| ++++.|.||||
T Consensus 81 l~~Gr~~Yt~~lne~G~v~dD~~v~rl~~d~f~lv~~a~~~~~~~~~l~~~~~~---~~~~v~~~~~t-~~~~~lalqGP 156 (379)
T COG0404 81 LKPGRARYTLMLNEDGGIIDDLIVYRLGEDRFFLVTNAATAEKDLAWLERHQAG---PDLDVTLTSVT-EDLAVLALQGP 156 (379)
T ss_pred CCCCcEEEeeeECCCCCEEeeEEEEEecCCeEEEEeCccchHHHHHHHHHhhcc---CCcceEEeecc-ccEEEEEEECc
Confidence 999999999999999999999999999999999999999999999999986532 25789999998 57899999999
Q ss_pred CHHHHHhhccccC-CCCCcccceEeeeecCc-cEEEEecCccCCCeEEEEecCCcHHHHHHHHHcCCC---eeecCchhh
Q psy4854 353 LSSTILQRHTDLD-LSSLYFMTSRPCTIAGI-PCTLTRAGYTGEDGVEISVPGEQCTHIVEALLSDED---VKLAGLGAR 427 (555)
Q Consensus 353 ~A~~vL~~l~~~d-l~~l~~~~~~~~~i~g~-~v~i~R~~~~ge~G~eL~~~~~~a~~l~~~L~~ag~---~~~~G~~a~ 427 (555)
+|+++|+++...+ ..+|||++++...+++. +++++|+|||||+||||++|++++.++|++|+++|+ ++|+|+.|+
T Consensus 157 kAr~il~~~~~~~~~~~l~~~~~~~~~i~g~~~~~i~R~gyTGE~G~Ei~~p~~~a~~vw~aL~~aG~~~g~~P~Gl~A~ 236 (379)
T COG0404 157 KAREVLAKLVDGDLVEALPFFAFKEVTIGGGVPVRISRTGYTGELGFEIYVPAEDAAAVWDALLEAGEKFGVKPCGLGAR 236 (379)
T ss_pred CHHHHHHHhccccccccCCceEEEEEEecCCceEEEEeccccCCCeEEEEecHHHHHHHHHHHHHhhhhcCceEeecchh
Confidence 9999999999877 47899999999999877 699999999999999999999999999999999985 999999999
Q ss_pred Hhhh---------ccCCCC-CCccccccccccccc-ccCCceeEEecc-C---CcEEEEEEee-cCc--c-ceEeecccc
Q psy4854 428 DSLS---------GDITLN-TPVPHGSLKLSNDRF-KSLGKDIHLQFL-S---PEERGLIAVQ-GPL--S-STILQRHTD 488 (555)
Q Consensus 428 ~~lR---------~dl~~~-~P~E~gl~~~v~~~K-~~iG~eal~~~~-~---~~lv~l~~~~-gp~--a-~~v~~~~~~ 488 (555)
++|| +|++++ +|+|+||+|+|+++| +|+|++++++++ . |++|+|.++. +|. . .+|+..++.
T Consensus 237 dtLRlE~g~~l~g~d~~~~~~P~eagl~~~v~~~k~dFiGk~al~~~k~~g~~r~lVgl~~~~~~~~~~~g~~v~~~~g~ 316 (379)
T COG0404 237 DTLRLEAGLRLYGQDLDETITPLEAGLGWAVKLDKDDFIGKAALLREKAKGVRRKLVGLKLDDKGPVLRGGEPVLDADGE 316 (379)
T ss_pred hHhhhhcCccccccccCCCCCHhhcCcceEecCCCcCCcCHHHHHhhhhcCCceEEEEEEEcCCCCCCCCCCeEEecCCC
Confidence 9999 999999 999999999999999 579999999887 2 4699999843 232 2 778843332
Q ss_pred cceeeEEEEeeeeecccCeeEEEEecccc-CCceEEEEeCCcchH
Q psy4854 489 LDLSSLYFMTSRPCTIAGIPCTLTRAGYT-GEDGVEISVPGEQCT 532 (555)
Q Consensus 489 ~~~t~~~~~~~~~~~~~~i~~~~~r~~y~-ge~g~EI~i~~~~~~ 532 (555)
..++.++++..+|.....|.++++..+|. .+...+|++.+++.+
T Consensus 317 ~~vG~VTSg~~Sptlg~~IAla~v~~~~~~~G~~~~v~i~~~~~~ 361 (379)
T COG0404 317 VEVGEVTSGTFSPTLGKSIALAYVDSDYAKPGTELEVEIRGKRVP 361 (379)
T ss_pred EeEEEEeeccccccCCCeeEEEEechhhccCCcEEEEEECCeEEE
Confidence 12444555555677777788888888874 234455777776444
No 3
>PLN02319 aminomethyltransferase
Probab=100.00 E-value=8.3e-60 Score=500.26 Aligned_cols=340 Identities=41% Similarity=0.651 Sum_probs=294.6
Q ss_pred CCCCCCCCCCcChHHHHHCCCEEEeeCCcccccccCCCChHHHHHHHhcCcEEEecCCceEEEEEcccHHHHHhhccccC
Q psy4854 190 GSSPSAEQRTPLYDLHLSHGGKMVPFAGFSMPVQYGAVSITASHLHTRSKVSVFDVSHMLQTVVTGKHREEWLESICVAD 269 (555)
Q Consensus 190 ~~~~r~~r~spl~~~~~~~gA~f~~~~g~e~p~~f~~~~~~~E~~a~r~~v~l~DlS~~~~i~v~G~da~~fLq~l~t~d 269 (555)
+.+.|++|+||||++|.++||+|++++|||+|.||+. .+.+||+|||++|++||+|++++|+|+|+||.+|||+++|||
T Consensus 26 ~~~~r~~r~tpl~~~~~~~Ga~~~~~~Gwe~p~~y~~-~~~~E~~a~R~~~gl~DlS~~~~i~V~G~Da~~fLq~l~t~d 104 (404)
T PLN02319 26 FASEANLKKTALYDFHVANGGKMVPFAGWSMPIQYKD-SIMDSTLNCRQNGSLFDVSHMCGLSLKGKDAIPFLETLVVAD 104 (404)
T ss_pred ccCCCCcccCCcHHHHHHCCCEEEEECCEehhhhcCc-cHHHHHHHHHhCeEEEECCCcEEEEEECCCHHHHHhhhcccc
Confidence 4488999999999999999999999999999999973 589999999999999999999999999999999999999999
Q ss_pred CCCCCCCceEEeeeecCCcceEEEEEEEEecCCeEEEEecccchHHHHHHHHHHHhhhccCCCCEEEEEccCCCeEEEEE
Q psy4854 270 VHELDPGKGTLSLFTNEQGGIQDDLIVTKTLEDSLFLVSNASRRKVDMDLMVAAQDRFKSLGKDIHLQFLSAEERGLIAV 349 (555)
Q Consensus 270 v~~l~~G~~~yt~~ln~~G~i~~d~~v~r~~~d~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~V~i~dvs~~~~~~i~v 349 (555)
|+++++|+++||++||++|+|++|++|+|+++|+|+|+++++..+.+++||++++..++..+.+|.+. ++ ++++.|.|
T Consensus 105 v~~l~~G~~~yt~~ln~~G~ii~D~~v~r~~~d~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~v~~~-~~-~~~~~l~l 182 (404)
T PLN02319 105 IAGLKDGTGTLSVFTNEKGGIIDDTVITKVTDDHIYLVVNAGCRDKDLAHIEEHMKAFKAKGGDVSWH-VH-DERSLLAL 182 (404)
T ss_pred cCCCCCCCEEEeEEECCCCeEEEEEEEEEEcCCEEEEEECCccHHHHHHHHHhhhhhccCCCCcEEEE-Ec-CCeEEEEE
Confidence 99999999999999999999999999999988999999999999999999999986543223467774 56 47899999
Q ss_pred cCCCHHHHHhhccccCCCCCcccceEeeeecCccEEEEecCccCCCeEEEEecCCcHHHHHHHHHcCC--CeeecCchhh
Q psy4854 350 QGPLSSTILQRHTDLDLSSLYFMTSRPCTIAGIPCTLTRAGYTGEDGVEISVPGEQCTHIVEALLSDE--DVKLAGLGAR 427 (555)
Q Consensus 350 ~GP~A~~vL~~l~~~dl~~l~~~~~~~~~i~g~~v~i~R~~~~ge~G~eL~~~~~~a~~l~~~L~~ag--~~~~~G~~a~ 427 (555)
+||+|+++|++++..+++++||+.++...+++.+++++|++|+||+||||++|.+++.++|+.|+++| .+.++|+.|+
T Consensus 183 qGP~s~~~l~~l~~~~l~~~~f~~~~~~~i~g~~v~i~R~g~tGE~G~El~~p~~~a~~l~~~L~~aG~~g~~~~G~~a~ 262 (404)
T PLN02319 183 QGPLAAPVLQHLTKEDLSKMYFGDFRITDINGADCFLTRTGYTGEDGFEISVPSEHAVDLAKALLEKSEGKVRLTGLGAR 262 (404)
T ss_pred ECccHHHHHHHhcccchhhCCCceEEEEEECCeeEEEEEeeecCCCeEEEEEcHHHHHHHHHHHHhCcccCcEecchhHh
Confidence 99999999999988888889999999999999999999999999999999999999999999999987 4789999999
Q ss_pred Hhhh---------ccCCCC-CCcccccccccc---ccccc-CCceeEEecc----CCcEEEEEEeecCcc--ceEeeccc
Q psy4854 428 DSLS---------GDITLN-TPVPHGSLKLSN---DRFKS-LGKDIHLQFL----SPEERGLIAVQGPLS--STILQRHT 487 (555)
Q Consensus 428 ~~lR---------~dl~~~-~P~E~gl~~~v~---~~K~~-iG~eal~~~~----~~~lv~l~~~~gp~a--~~v~~~~~ 487 (555)
++|| +|++++ +|+|+||+|+|+ |+|+| +|||++++++ .++++++.....|.. .+|+..++
T Consensus 263 d~lRiEaG~p~~g~dl~~~~~P~EagL~~~v~~~~~~Kg~fiGqEalar~~~~g~~rrlvgl~~~~~~~~~g~~v~~~~g 342 (404)
T PLN02319 263 DSLRLEAGLCLYGNDLEEHITPVEAGLAWTIGKRRRAEGGFLGADVILKQLKEGVSRRRVGFISSGAPARSHSEILDESG 342 (404)
T ss_pred hHHHhhcCccccCCcCCCCCCHHHCCccceecccccCCCCCcCHHHHHHHHhcCCCeEEEEEEECCccCCCCCEEEeCCC
Confidence 9999 899999 999999999986 67888 9999999876 388999965222332 56764332
Q ss_pred ccceeeEEEEeeeeecccCeeEEEEecccc-CCceEEEEeCCcchHH
Q psy4854 488 DLDLSSLYFMTSRPCTIAGIPCTLTRAGYT-GEDGVEISVPGEQCTH 533 (555)
Q Consensus 488 ~~~~t~~~~~~~~~~~~~~i~~~~~r~~y~-ge~g~EI~i~~~~~~~ 533 (555)
. .++.++....++..-..|.+++++.+|. .+..++|.+.++..++
T Consensus 343 ~-~VG~VTS~~~Sp~l~~~Iala~v~~~~~~~g~~v~v~~~g~~~~a 388 (404)
T PLN02319 343 E-KIGEVTSGGFSPCLKKNIAMGYVKSGFHKAGTEVKVEVRGKMYDA 388 (404)
T ss_pred C-EEEEEeeecccccCCceEEEEEEChhhcCCCCEEEEEECCeEEEE
Confidence 2 3444444445565556788888888774 4667999988875443
No 4
>PRK13579 gcvT glycine cleavage system aminomethyltransferase T; Provisional
Probab=100.00 E-value=6e-57 Score=473.99 Aligned_cols=330 Identities=36% Similarity=0.541 Sum_probs=289.8
Q ss_pred CCCCCCCCCcChHHHHHCCCEEEeeCCcccccccCCCChHHHHHHHhcCcEEEecCCceEEEEEcccHHHHHhhccccCC
Q psy4854 191 SSPSAEQRTPLYDLHLSHGGKMVPFAGFSMPVQYGAVSITASHLHTRSKVSVFDVSHMLQTVVTGKHREEWLESICVADV 270 (555)
Q Consensus 191 ~~~r~~r~spl~~~~~~~gA~f~~~~g~e~p~~f~~~~~~~E~~a~r~~v~l~DlS~~~~i~v~G~da~~fLq~l~t~dv 270 (555)
...|++|+||||++|.++||+|++++|||+|.||++ ++.+||+|+|++|+++|+|++++|+|+|+||.+|||+++||||
T Consensus 4 ~~~~~~r~~pl~~~~~~~ga~~~~~~g~e~p~~f~~-~~~~E~~avr~~a~l~Dls~~~~i~v~G~Da~~fLq~~~tndi 82 (370)
T PRK13579 4 DDTSPLKTLPLHALHLAAGARMVPFAGYDMPVQYPA-GVLKEHLHTRAHAGLFDVSHMGQIEVSGKDAAAALERLVPVDI 82 (370)
T ss_pred CCCCccccCccHHHHHHCCCEEEEECCeecccccCc-cHHHHHHHHHhccEEEECCCcEEEEEECCCHHHHHHHhccccC
Confidence 458999999999999999999999999999999963 6999999999999999999999999999999999999999999
Q ss_pred CCCCCCceEEeeeecCCcceEEEEEEEEecCCeEEEEecccchHHHHHHHHHHHhhhccCCCCEEEEEccCCCeEEEEEc
Q psy4854 271 HELDPGKGTLSLFTNEQGGIQDDLIVTKTLEDSLFLVSNASRRKVDMDLMVAAQDRFKSLGKDIHLQFLSAEERGLIAVQ 350 (555)
Q Consensus 271 ~~l~~G~~~yt~~ln~~G~i~~d~~v~r~~~d~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~V~i~dvs~~~~~~i~v~ 350 (555)
+++++|+++|+++||++|+|++|++|+|+ +|+|+|+++++..+.+++||++++. .+|+|+|++ +++.+.|+
T Consensus 83 ~~l~~g~~~y~~~ln~~G~i~~d~~v~r~-~d~~~L~~~~~~~~~~~~~l~~~~~------~~V~i~d~~--~~~~l~l~ 153 (370)
T PRK13579 83 LALKEGRQRYTFFTNEQGGILDDLMVTNL-GDHLFLVVNAACKDADIAHLREHLS------DECEVNPLD--DRALLALQ 153 (370)
T ss_pred CCCCCCCEEEeEEECCCCeEEEeEEEEEE-CCeEEEEECcCCHHHHHHHHHHhCC------CCcEEEECC--CcEEEEEE
Confidence 99999999999999999999999999999 5799999999999999999998763 389999998 78999999
Q ss_pred CCCHHHHHhhccccCCCCCcccceEeeeecCccEEEEecCccCCCeEEEEecCCcHHHHHHHHHcCCCeeecCchhhHhh
Q psy4854 351 GPLSSTILQRHTDLDLSSLYFMTSRPCTIAGIPCTLTRAGYTGEDGVEISVPGEQCTHIVEALLSDEDVKLAGLGARDSL 430 (555)
Q Consensus 351 GP~A~~vL~~l~~~dl~~l~~~~~~~~~i~g~~v~i~R~~~~ge~G~eL~~~~~~a~~l~~~L~~ag~~~~~G~~a~~~l 430 (555)
||+|+++|++++ .+++.++++.++...+++.+++++|++|+||+||||++|.+.+.++|+.|++++.+.++|+.+++++
T Consensus 154 GP~a~~il~~l~-~~~~~~~~~~~~~~~~~g~~~~i~R~~~~Ge~G~el~~~~~~~~~l~~~l~~~~g~~~~G~~a~~~l 232 (370)
T PRK13579 154 GPEAEAVLADLG-PPVAALRFMDGFEPRLHGVDCFVSRSGYTGEDGFEISVPADAAEALAEALLADPRVEPIGLGARDSL 232 (370)
T ss_pred CcCHHHHHHHhh-hhhhcCCCceEEEEEECCeEEEEEEeeecCCCEEEEEEcHHHHHHHHHHHHccCCceEechhhhhHH
Confidence 999999999997 4677799999999999998999999999999999999999999999999999877899999999999
Q ss_pred h---------ccCCCC-CCccccccccccc---cccc-CCceeEEecc----CCcEEEEEEeec--Ccc--ceEeecccc
Q psy4854 431 S---------GDITLN-TPVPHGSLKLSND---RFKS-LGKDIHLQFL----SPEERGLIAVQG--PLS--STILQRHTD 488 (555)
Q Consensus 431 R---------~dl~~~-~P~E~gl~~~v~~---~K~~-iG~eal~~~~----~~~lv~l~~~~g--p~a--~~v~~~~~~ 488 (555)
| +|++++ +|+|+||+|+|++ +|+| +|||++++++ .++++++.+ ++ |+. .+|+.+++.
T Consensus 233 RiE~G~p~~g~dl~~~~~P~E~gL~~~v~~~~~~KgcyiGqEalar~~~~G~~kr~v~l~~-~~~~~~~~g~~v~~~~g~ 311 (370)
T PRK13579 233 RLEAGLCLYGHDIDTTTTPVEAALEWAIQKARREAGGFPGAKAILAALAKGASRRRVGLKP-EGRAPVREGAPLFDDAGT 311 (370)
T ss_pred HhhcCCcccCCcCCCCCCHHHCCccceecCCCCCCCCCcCHHHHHHHHhcCCCeEEEEEEE-CCccCCCCCCEEEcCCCc
Confidence 9 789999 9999999999875 7788 9999999886 278899988 44 332 778865422
Q ss_pred cceeeEEEEeeeeecccCeeEEEEecccc-CCceEEEEeCCcchHH
Q psy4854 489 LDLSSLYFMTSRPCTIAGIPCTLTRAGYT-GEDGVEISVPGEQCTH 533 (555)
Q Consensus 489 ~~~t~~~~~~~~~~~~~~i~~~~~r~~y~-ge~g~EI~i~~~~~~~ 533 (555)
.++.++....++....+|.+++++.++. .+..++|.+.++...+
T Consensus 312 -~VG~VtS~~~sp~l~~~iala~v~~~~~~~g~~v~v~~~g~~~~a 356 (370)
T PRK13579 312 -EIGTVTSGGFGPSVGGPVAMGYVPASLAAPGTAVFAEVRGKRLPV 356 (370)
T ss_pred -eEEEEeecCcchhcCCeEEEEEEChhhcCCCCEEEEEECCEEEEE
Confidence 3444444444556556788888888774 3566888888875443
No 5
>PRK12486 dmdA putative dimethyl sulfoniopropionate demethylase; Reviewed
Probab=100.00 E-value=3.6e-56 Score=466.57 Aligned_cols=325 Identities=20% Similarity=0.293 Sum_probs=275.1
Q ss_pred CCCCCCCcChHHHHHCCCEE-EeeCCcccccccCCCChHHHHHHHhcCcEEEecCCceEEEEEcccHHHHHhhccccCCC
Q psy4854 193 PSAEQRTPLYDLHLSHGGKM-VPFAGFSMPVQYGAVSITASHLHTRSKVSVFDVSHMLQTVVTGKHREEWLESICVADVH 271 (555)
Q Consensus 193 ~r~~r~spl~~~~~~~gA~f-~~~~g~e~p~~f~~~~~~~E~~a~r~~v~l~DlS~~~~i~v~G~da~~fLq~l~t~dv~ 271 (555)
.+.+|+||||++|.++||+| ++++||++|.||+ ++.+||+|||++|+|||+|++++|+|+|+||.+|||+++||||+
T Consensus 8 ~~~~~~t~l~~~h~~~ga~~~~~~~g~~~p~~~~--~~~~E~~A~R~~~gl~D~S~~~~i~V~G~Da~~fL~~l~t~di~ 85 (368)
T PRK12486 8 SRRLRRTPFSDGVEAAGVKAYTVYNHMLLPTVFE--SVEDDYAHLKEHVQVWDVAVERQVEIRGPDAARLVQMLTPRDLR 85 (368)
T ss_pred CccccCCCCHHHHHHCCCeEEecCCCeECccccC--CHHHHHHHHHhcceEEEcCCcEEEEEECCCHHHHHHHhcccccc
Confidence 34579999999999999995 5899999999998 79999999999999999999999999999999999999999999
Q ss_pred CCCCCceEEeeeecCCcceEEEEEEEEecCCeEEEEecccchHHHHHHHHHHHhhhccCCCCEEEEEccCCCeEEEEEcC
Q psy4854 272 ELDPGKGTLSLFTNEQGGIQDDLIVTKTLEDSLFLVSNASRRKVDMDLMVAAQDRFKSLGKDIHLQFLSAEERGLIAVQG 351 (555)
Q Consensus 272 ~l~~G~~~yt~~ln~~G~i~~d~~v~r~~~d~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~V~i~dvs~~~~~~i~v~G 351 (555)
++++|+++||++||++|+|++|++|+|+++|+|+|+++.+ ....||++++.. .++.+++.+ ++++.|.|+|
T Consensus 86 ~l~~G~~~yt~~ln~~G~i~~D~~v~r~~ed~~~l~~~~~---~~~~~l~~~~~~-----~~~~v~~~~-~~~~~l~lqG 156 (368)
T PRK12486 86 GMKPGQCYYVPIVDETGGMLNDPVALKLAEDRWWISIADS---DLLLWVKGLANG-----RKLDVLVVE-PDVSPLAVQG 156 (368)
T ss_pred cCCCCcEEEEEEEcCCCcEEeeEEEEEecCCEEEEEEcCc---cHHHHHHHhhhh-----cCCcEEEec-CCeEEEEeEC
Confidence 9999999999999999999999999999999999988654 457899887653 234444455 3689999999
Q ss_pred CCHHHHHhhccccCCCCCcccceEeeeecCccEEEEecCccCCCeEEEEecCC-cHHHHHHHHHcCCC---eeecCchhh
Q psy4854 352 PLSSTILQRHTDLDLSSLYFMTSRPCTIAGIPCTLTRAGYTGEDGVEISVPGE-QCTHIVEALLSDED---VKLAGLGAR 427 (555)
Q Consensus 352 P~A~~vL~~l~~~dl~~l~~~~~~~~~i~g~~v~i~R~~~~ge~G~eL~~~~~-~a~~l~~~L~~ag~---~~~~G~~a~ 427 (555)
|+|+++|+++++.+++++|+++++...+++.+++++|+||+||+||||+++.+ ++.++|++|+++|+ +.++|..++
T Consensus 157 P~s~~il~~l~~~~l~~~~~~~~~~~~i~g~~~~i~R~g~tGE~G~Ei~~~~~~~a~~l~~~L~~aG~~~~~~~~~~~~~ 236 (368)
T PRK12486 157 PKADALMARVFGEAIRDLRFFRFGYFDFEGTDLVIARSGYSKQGGFEIYVEGSDLGMPLWDALFEAGKDLNVRAGCPNLI 236 (368)
T ss_pred cCHHHHHHHHhcCChhhCCCceeEEEEECCcEEEEEeccccCCceEEEEeccHHHHHHHHHHHHhcccccCcccccChhH
Confidence 99999999998888889999999999999999999999999999999999986 69999999999987 456665554
Q ss_pred Hhhh---------ccCCCC-CCcccccccccccccc--cCCceeEEecc----CCcEEEEEEeecC---cc---ceEeec
Q psy4854 428 DSLS---------GDITLN-TPVPHGSLKLSNDRFK--SLGKDIHLQFL----SPEERGLIAVQGP---LS---STILQR 485 (555)
Q Consensus 428 ~~lR---------~dl~~~-~P~E~gl~~~v~~~K~--~iG~eal~~~~----~~~lv~l~~~~gp---~a---~~v~~~ 485 (555)
+| +|++++ +|+|+||+|+|+|+|+ |+|||++++++ .+++++|.+ +++ .. .+|+.+
T Consensus 237 --~RlE~G~~~~g~D~~~~~~P~EagL~~~v~~~k~~~FiGkeal~r~~~~g~~rrlvgl~~-~~~~~~~~~~~~~V~~~ 313 (368)
T PRK12486 237 --ERIEGGLLSYGNDMTRDNTPHECGLGRFCNTQTDIGCIGKDALLRVAKEGPQKQIRGIKI-GGERIPPCDRAWPLLAG 313 (368)
T ss_pred --hHHhcccccccccCCCCCChHHCCCceEEcCCCCCCCcCHHHHHHHHhcCCCeEEEEEEE-CCCCCCCcCCceEEeeC
Confidence 46 899999 9999999999999996 59999999876 288999988 442 21 457765
Q ss_pred ccccceeeEEEEeeeeecccCeeEEEEecccc-CCceEEEEeCCcchHH
Q psy4854 486 HTDLDLSSLYFMTSRPCTIAGIPCTLTRAGYT-GEDGVEISVPGEQCTH 533 (555)
Q Consensus 486 ~~~~~~t~~~~~~~~~~~~~~i~~~~~r~~y~-ge~g~EI~i~~~~~~~ 533 (555)
+. .++.+++...++.....|.+++++.++. .+..+||.+.++..++
T Consensus 314 g~--~VG~vTS~~~sp~l~~~Iala~v~~~~~~~g~~l~v~~~~~~~~a 360 (368)
T PRK12486 314 DN--RVGQVTSAAYSPDFQTNVAIGMVRMTHWDPGTGLEVETPDGMRPA 360 (368)
T ss_pred Ce--EEEEEeccCcCcccCceEEEEEEChhhcCCCCEEEEEECCceEEE
Confidence 53 3444444444555555778888887774 4667899988886544
No 6
>TIGR00528 gcvT glycine cleavage system T protein. Eukaryotic forms are mitochondrial and have an N-terminal transit peptide.
Probab=100.00 E-value=3e-54 Score=452.76 Aligned_cols=329 Identities=31% Similarity=0.434 Sum_probs=281.8
Q ss_pred CCCCcChHHHHHCCCEEEeeCCcccccccCCCChHHHHHHHhcCcEEEecCCceEEEEEcccHHHHHhhccccCCCCCCC
Q psy4854 196 EQRTPLYDLHLSHGGKMVPFAGFSMPVQYGAVSITASHLHTRSKVSVFDVSHMLQTVVTGKHREEWLESICVADVHELDP 275 (555)
Q Consensus 196 ~r~spl~~~~~~~gA~f~~~~g~e~p~~f~~~~~~~E~~a~r~~v~l~DlS~~~~i~v~G~da~~fLq~l~t~dv~~l~~ 275 (555)
+|+||||++|.+.||+|.+++||++|.||+ ++.+||+|+|++|+++|+|++++|+|+|+||.+|||+++||||..+++
T Consensus 1 ~r~spl~~~~~~~ga~~~~~~g~~~p~~y~--~~~~E~~a~r~~~~l~dls~~~~i~vsG~Da~~fLq~~~t~di~~l~~ 78 (361)
T TIGR00528 1 LKRTPLYDLHTECGGKMVDFGGWEMPVQYG--SQIDEHHAVRTDAGLFDVSHMGIVDLSGSRSLEFLQRLLPNDVAALTP 78 (361)
T ss_pred CCCCcchHHHHHCCCEEEEECCchhhhccC--ChHHHHHHHHhhCcEEECCCcEEEEEECCCHHHHHhHhcccccccCCC
Confidence 489999999999999999999999999998 699999999999999999999999999999999999999999999999
Q ss_pred CceEEeeeecCCcceEEEEEEEEecCCeEEEEecccchHHHHHHHHHHHhhhccCCCCEEEEEccCCCeEEEEEcCCCHH
Q psy4854 276 GKGTLSLFTNEQGGIQDDLIVTKTLEDSLFLVSNASRRKVDMDLMVAAQDRFKSLGKDIHLQFLSAEERGLIAVQGPLSS 355 (555)
Q Consensus 276 G~~~yt~~ln~~G~i~~d~~v~r~~~d~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~V~i~dvs~~~~~~i~v~GP~A~ 355 (555)
|++.||++||++|+|++|++|+|+++|+|+|+++++..+.++.||++++. .+|++.|+| +++..|+|+||+|+
T Consensus 79 g~~~~~~~l~~~G~i~~d~~v~r~~~d~~~l~~~~~~~~~~~~~l~~~~~------~~v~i~~~t-~~~~~l~l~GP~a~ 151 (361)
T TIGR00528 79 GKAQYSVLLNPQGGVVDDLIIYYFGEDRFRLVVNAATREKDLSWITEHAE------PFGIEDTQS-DDISLLAVQGPKAA 151 (361)
T ss_pred CCEEEEEEECCCCeEEEEEEEEEecCCEEEEEECCccHHHHHHHHHHhCc------CCcEEEECc-CCEEEEEeECcCHH
Confidence 99999999999999999999999998999999999999999999999853 479999999 56899999999999
Q ss_pred HHHhhccccCCCCCc-ccceEeeeecCccEEEEecCccCCCeEEEEecCCcHHHHHHHHHcCCCeeecCchhhHhhh---
Q psy4854 356 TILQRHTDLDLSSLY-FMTSRPCTIAGIPCTLTRAGYTGEDGVEISVPGEQCTHIVEALLSDEDVKLAGLGARDSLS--- 431 (555)
Q Consensus 356 ~vL~~l~~~dl~~l~-~~~~~~~~i~g~~v~i~R~~~~ge~G~eL~~~~~~a~~l~~~L~~ag~~~~~G~~a~~~lR--- 431 (555)
++|+.++..+++.++ +.......+++.+++++|++|+||+||||++|.+.+.++|++|+++|.+.++|..+++++|
T Consensus 152 ~~l~~l~~~~~~~~~~~~~~~~~~~~g~~~~i~r~~~~ge~g~el~~~~~~~~~l~~~l~~~gg~~~~g~~a~~~lRie~ 231 (361)
T TIGR00528 152 TILNPLQDQAVEGLKPFFFVQEADFSGRKAFIARTGYTGEDGYEIALPNEKAADFWRALVEAYGVKPCGLGARDTLRLEA 231 (361)
T ss_pred HHHHHhcccchhhcccccceeEEEECCceEEEEEcceeCCCeEEEEecHHHHHHHHHHHHhcCCcEEcchhhhhhhHhhc
Confidence 999999877776655 4445577888888999999999999999999999999999999999778999999999999
Q ss_pred ------ccCCCC-CCcccccccccccc--ccc-CCceeEEecc----CCcEEEEEEeec--Ccc-ceEeecccccceeeE
Q psy4854 432 ------GDITLN-TPVPHGSLKLSNDR--FKS-LGKDIHLQFL----SPEERGLIAVQG--PLS-STILQRHTDLDLSSL 494 (555)
Q Consensus 432 ------~dl~~~-~P~E~gl~~~v~~~--K~~-iG~eal~~~~----~~~lv~l~~~~g--p~a-~~v~~~~~~~~~t~~ 494 (555)
.|++++ +|+|+||+|+++++ |+| +|||++++++ .+|++++.+... |.. .+|+..+++..++.+
T Consensus 232 G~p~~~~d~~~~~~P~E~gl~~~v~~~fkKgcy~GqE~lar~~~~G~~krlv~l~~~~~~~~~~g~~v~~~~g~~~vG~v 311 (361)
T TIGR00528 232 GMNLYGQELDETITPLEAGLGWTIAWEPAKRDFIGRAVLEEQKENGTEKKLVGLEMLEKGIARNGYPVFFTNGNQHVGIV 311 (361)
T ss_pred CCCccCccCCCCCChHHCCcccEEecCCCCCCCcCHHHHHhHHhcCCCeEEEEEEECCCcCCCCCCEEEeCCCCeeEEEE
Confidence 899999 99999999998875 788 9999999876 277999987432 222 678762221233333
Q ss_pred EEEeeeeecccCeeEEEEecccc-CCceEEEEeCCcchHH
Q psy4854 495 YFMTSRPCTIAGIPCTLTRAGYT-GEDGVEISVPGEQCTH 533 (555)
Q Consensus 495 ~~~~~~~~~~~~i~~~~~r~~y~-ge~g~EI~i~~~~~~~ 533 (555)
+....++..-..+.+++++.++. .+..++|++.+++..+
T Consensus 312 tS~~~s~~~g~~iala~v~~~~~~~g~~~~v~~~g~~~~a 351 (361)
T TIGR00528 312 TSGTFSPTLGKNIGLAYVPSETEKIGTTLIVQIRNKEYPI 351 (361)
T ss_pred eecCcchhcCceEEEEEEChhhcCCCCEEEEEECCeEEEE
Confidence 33333433333577888887774 3567999988875543
No 7
>PRK00389 gcvT glycine cleavage system aminomethyltransferase T; Reviewed
Probab=100.00 E-value=1.3e-53 Score=448.06 Aligned_cols=324 Identities=37% Similarity=0.537 Sum_probs=283.1
Q ss_pred CCCCcChHHHHHCCCEEEeeCCcccccccCCCChHHHHHHHhcCcEEEecCCceEEEEEcccHHHHHhhccccCCCCCCC
Q psy4854 196 EQRTPLYDLHLSHGGKMVPFAGFSMPVQYGAVSITASHLHTRSKVSVFDVSHMLQTVVTGKHREEWLESICVADVHELDP 275 (555)
Q Consensus 196 ~r~spl~~~~~~~gA~f~~~~g~e~p~~f~~~~~~~E~~a~r~~v~l~DlS~~~~i~v~G~da~~fLq~l~t~dv~~l~~ 275 (555)
+|+||||++|.++||+|++++|||+|.||+ ++++||+|+|++|+++|+|++++|+|+|+||.+|||+++||||+++++
T Consensus 2 ~r~s~l~~~~~~~ga~f~~~~g~~~p~~~~--~~~~E~~a~r~~~~l~dls~~~~i~v~G~Da~~fLq~~~t~dv~~l~~ 79 (359)
T PRK00389 2 LKRTPLYDLHVALGAKMVDFGGWEMPVQYG--SIIEEHHAVRTDAGLFDVSHMGEVDVTGPDALAFLQYLLANDVSKLKP 79 (359)
T ss_pred CcCCccHHHHHHcCCEEEeECCeecchhcc--CHHHHHHHHHhCceEEECCCcEEEEEECCCHHHHHhhhcccccccCCC
Confidence 689999999999999999999999999998 799999999999999999999999999999999999999999999999
Q ss_pred CceEEeeeecCCcceEEEEEEEEecCCeEEEEecccchHHHHHHHHHHHhhhccCCCCEEEEEccCCCeEEEEEcCCCHH
Q psy4854 276 GKGTLSLFTNEQGGIQDDLIVTKTLEDSLFLVSNASRRKVDMDLMVAAQDRFKSLGKDIHLQFLSAEERGLIAVQGPLSS 355 (555)
Q Consensus 276 G~~~yt~~ln~~G~i~~d~~v~r~~~d~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~V~i~dvs~~~~~~i~v~GP~A~ 355 (555)
|+++|+++||++|+|++|++|+|+++|+|+|+++++..+.++.||++|+. +.+|+|.|++ ++++.+.|+||+|.
T Consensus 80 g~~~~~~~l~~~G~i~~d~~v~r~~~~~~ll~~~~~~~~~~~~~L~~~~~-----~~~V~i~d~~-~~~~~l~l~GP~a~ 153 (359)
T PRK00389 80 GKAQYTCMLNEDGGVIDDLIVYKLSEDEYLLVVNAANREKDLAWIKSHAA-----GFGVEVTDRS-DDLAMIAVQGPKAR 153 (359)
T ss_pred CcEEEeEEECCCCCEEEeEEEEEecCCEEEEEECcccHHHHHHHHHhhCc-----cCCEEEEECC-CCEEEEEEECccHH
Confidence 99999999999999999999999988999999999999999999999975 3689999999 45899999999999
Q ss_pred HHHhhccccCCCCC-cccceEeeeecCccEEEEecCccCCCeEEEEecCCcHHHHHHHHHcCCCeeecCchhhHhhh---
Q psy4854 356 TILQRHTDLDLSSL-YFMTSRPCTIAGIPCTLTRAGYTGEDGVEISVPGEQCTHIVEALLSDEDVKLAGLGARDSLS--- 431 (555)
Q Consensus 356 ~vL~~l~~~dl~~l-~~~~~~~~~i~g~~v~i~R~~~~ge~G~eL~~~~~~a~~l~~~L~~ag~~~~~G~~a~~~lR--- 431 (555)
++|++++..+++.+ ++..+....+++.+++++|++++||+||+|++|.+.+.++|+.|+++| +.++|..+++.+|
T Consensus 154 ~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~r~~~~ge~g~el~~~~~~~~~l~~~L~~ag-~~~~g~~a~~~lrie~ 232 (359)
T PRK00389 154 EKLQKLTDADLSELKPFFGAQGAEVGGGDVLVARTGYTGEDGFEIYLPAEDAEALWDALLEAG-VKPCGLGARDTLRLEA 232 (359)
T ss_pred HHHHHhcccchhhccccceeeEEEECCeEEEEEeceecCCCeEEEEEchHHHHHHHHHHHHcC-CeecchhHHhHHHHhc
Confidence 99999988777777 666666667777789999999999999999999999999999999985 7899999999999
Q ss_pred ------ccCCCC-CCcccccccccccc-ccc-CCceeEEecc----CCcEEEEEEeec--Ccc-ceEeecccccceeeEE
Q psy4854 432 ------GDITLN-TPVPHGSLKLSNDR-FKS-LGKDIHLQFL----SPEERGLIAVQG--PLS-STILQRHTDLDLSSLY 495 (555)
Q Consensus 432 ------~dl~~~-~P~E~gl~~~v~~~-K~~-iG~eal~~~~----~~~lv~l~~~~g--p~a-~~v~~~~~~~~~t~~~ 495 (555)
.|++++ +|+|+||+|+|+|+ |+| +|||+++|++ +|+++++.+... |.. .+|+.++. .++.+.
T Consensus 233 G~p~~~~d~~~~~~P~e~gl~~~v~~~~Kgcy~GqE~var~~~~g~krrlv~l~~~~~~~~~~g~~v~~~g~--~vG~vt 310 (359)
T PRK00389 233 GMPLYGQDMDETITPLEAGLGWTVKLEEKRDFIGREALEAQKEAGVERKLVGLELEERGIPRHGYPVLADGE--EIGEVT 310 (359)
T ss_pred CCCccCccCCCCCChHHcCcccEecCCCCCCCcCHHHHHHHHhcCCCeEEEEEEECCCcCCCCCCEEeeCCc--EEEEEe
Confidence 799999 99999999999999 999 9999999987 289999988322 222 67765433 333333
Q ss_pred EEeeeeecccCeeEEEEeccccCCceEEEEeCCcchH
Q psy4854 496 FMTSRPCTIAGIPCTLTRAGYTGEDGVEISVPGEQCT 532 (555)
Q Consensus 496 ~~~~~~~~~~~i~~~~~r~~y~ge~g~EI~i~~~~~~ 532 (555)
....++....++.+++++..+ +.++||++.++...
T Consensus 311 s~~~s~~~~~~iala~l~~~~--g~~~~v~~~~~~~~ 345 (359)
T PRK00389 311 SGTFSPTLGKSIALAYVPAGV--GDEVEVEIRGKQVP 345 (359)
T ss_pred ccCcccccCceEEEEEecCCC--CCEEEEEECCeEEE
Confidence 333344333467788888876 67899999887543
No 8
>TIGR01372 soxA sarcosine oxidase, alpha subunit family, heterotetrameric form. This model describes the alpha subunit of a family of known and putative heterotetrameric sarcosine oxidases. Five operons of such oxidases are found in Mesorhizobium loti and three in Agrobacterium tumefaciens, a high enough copy number to suggest that not all members are share the same function. The model is designated as subfamily rather than equivalog for this reason.Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms
Probab=100.00 E-value=7.2e-54 Score=499.80 Aligned_cols=351 Identities=21% Similarity=0.306 Sum_probs=297.0
Q ss_pred CCCCCCCcChHHHHHCCCEEEeeCCcccccccCC------CChHHHHHHHhcCcEEEecCCceEEEEEcccHHHHHhhcc
Q psy4854 193 PSAEQRTPLYDLHLSHGGKMVPFAGFSMPVQYGA------VSITASHLHTRSKVSVFDVSHMLQTVVTGKHREEWLESIC 266 (555)
Q Consensus 193 ~r~~r~spl~~~~~~~gA~f~~~~g~e~p~~f~~------~~~~~E~~a~r~~v~l~DlS~~~~i~v~G~da~~fLq~l~ 266 (555)
.+|+|+||||++|.++||+|.+++||++|.||+. +++.+||+|+|++|+|+|+|++++|+|+|+||.+|||+++
T Consensus 593 ~~~~r~tpl~~~~~~~GA~~~~~~gw~~p~~y~~~~~~~~~~~~~E~~avR~~vgl~D~S~~g~i~V~G~DA~~fL~~~~ 672 (985)
T TIGR01372 593 FDPARKTPLHSWHLAHGAVFEDVGQWKRPWYYPRRGEDMDEAVARECKAVRESVGLFDASTLGKIEVQGPDAAEFLNRVY 672 (985)
T ss_pred CcccccCccHHHHHHcCCEeeeeCCccchhhhcCCCCcccchHHHHHHHHHhceEEEECCCcEEEEEECcCHHHHHhhhc
Confidence 5689999999999999999999999999999973 2689999999999999999999999999999999999999
Q ss_pred ccCCCCCCCCceEEeeeecCCcceEEEEEEEEecCCeEEEEecccchHHHHHHHHHHHhh-hccCCCCEEEEEccCCCeE
Q psy4854 267 VADVHELDPGKGTLSLFTNEQGGIQDDLIVTKTLEDSLFLVSNASRRKVDMDLMVAAQDR-FKSLGKDIHLQFLSAEERG 345 (555)
Q Consensus 267 t~dv~~l~~G~~~yt~~ln~~G~i~~d~~v~r~~~d~~~l~~~~~~~~~~~~~l~~~~~~-~~~~~~~V~i~dvs~~~~~ 345 (555)
||||+++++|+++||+|||++|+|++|++|+|+++|+|+|+++++..+.+++||++++.. | .+.+|+|.|+| ++++
T Consensus 673 tndi~~l~~G~~~yt~~l~~~G~i~dD~~v~r~~ed~~~l~~~~~~~~~~~~~L~~~~~~~~--~~~~V~i~d~t-~~~a 749 (985)
T TIGR01372 673 TNAFTKLKVGKARYGLMLREDGMVFDDGVTSRLAEDRFLMTTTTGGAARVLQHLEEWLQTEW--PELDVYLTSVT-DQWA 749 (985)
T ss_pred ccccCcCCCCCEEEeEEECCCCeEEEeEEEEEEeCCEEEEEeCCcCHHHHHHHHHHhhhhcc--CCCCEEEEECC-CCEE
Confidence 999999999999999999999999999999999999999999999999999999999752 1 13589999999 5789
Q ss_pred EEEEcCCCHHHHHhhccc-cCCC--CCcccceEeeeecCccEEEEecCccCCCeEEEEecCCcHHHHHHHHHcCCC---e
Q psy4854 346 LIAVQGPLSSTILQRHTD-LDLS--SLYFMTSRPCTIAGIPCTLTRAGYTGEDGVEISVPGEQCTHIVEALLSDED---V 419 (555)
Q Consensus 346 ~i~v~GP~A~~vL~~l~~-~dl~--~l~~~~~~~~~i~g~~v~i~R~~~~ge~G~eL~~~~~~a~~l~~~L~~ag~---~ 419 (555)
.|.|+||+|+++|++++. .+++ .+|++.+....+++.+++++|++|+||+||||++|.+++.++|++|+++|+ +
T Consensus 750 ~i~l~GP~s~~vl~~l~~~~dl~~~~~~~~~~~~~~~~g~~~~i~R~~~tGE~GyEi~~p~~~~~~l~~~L~~aG~~~g~ 829 (985)
T TIGR01372 750 TLAVSGPKARDLLAELVDGLDLSNEAFPFMAIKEGTLAGVPARLFRISFSGELAFEVNVPADYGEAVWEALMEAGQPFGI 829 (985)
T ss_pred EEEEECHhHHHHHHHhcCcccCccccCCCceeEEEEECCcEEEEEeccccCCceEEEEecHHHHHHHHHHHHhcchhcCc
Confidence 999999999999999986 4663 489999999999999999999999999999999999999999999999985 8
Q ss_pred eecCchhhHhhh---------ccCCCC-CCccccccccccccccc-CCceeEEecc-----CCcEEEEEEeec--Cc-c-
Q psy4854 420 KLAGLGARDSLS---------GDITLN-TPVPHGSLKLSNDRFKS-LGKDIHLQFL-----SPEERGLIAVQG--PL-S- 479 (555)
Q Consensus 420 ~~~G~~a~~~lR---------~dl~~~-~P~E~gl~~~v~~~K~~-iG~eal~~~~-----~~~lv~l~~~~g--p~-a- 479 (555)
.++|+.|+++|| +|++++ +|+|+||+|+|+|+|+| +|||++++++ .++++++.+.+. +. .
T Consensus 830 ~p~G~~a~~~lRiE~G~~~~g~d~~~~~tP~E~gl~~~V~~~Kg~fiGqeal~r~~~~~~~krrlvgl~~~~~~~~~~~g 909 (985)
T TIGR01372 830 TPYGTETMHVLRAEKGFIIVGQDTDGTVTPADLGMGWMVSKKKPDFVGRRMLAREDLVAEDRKQLVGLLPLDPQRRLPEG 909 (985)
T ss_pred eEcchhhhhhhhhhcCccccCcccCCCCCHHHCCCcccccCCCCCcCCHHHHHhHHhcCCCceEEEEEEEeCCCCCCCCC
Confidence 999999999999 899999 99999999999999988 9999998764 278999987443 22 2
Q ss_pred ceEeeccc----ccceeeEEEEeeeeecccCeeEEEEecccc-CCceEEEEeCCcchH--HHHHhcccCCCCcc
Q psy4854 480 STILQRHT----DLDLSSLYFMTSRPCTIAGIPCTLTRAGYT-GEDGVEISVPGEQCT--HIVEALLSDEDVKL 546 (555)
Q Consensus 480 ~~v~~~~~----~~~~t~~~~~~~~~~~~~~i~~~~~r~~y~-ge~g~EI~i~~~~~~--~v~~~l~~~~g~~~ 546 (555)
.+++.++. ...++.+++...++.....+.+++++.++. .+..++|++.++..+ .+-.+.+++.+.|.
T Consensus 910 ~~v~~~~~~~~~~~~vG~VTS~~~sp~lg~~iaLa~v~~~~~~~G~~v~v~~~g~~~~a~v~~~pf~dp~~~r~ 983 (985)
T TIGR01372 910 AHIVADDAEAIPMNMQGHVTSSYFSPALGRTIALALVKGGRARHGETVYVPDLGRFIAVEICDPVFFDPEGTRL 983 (985)
T ss_pred CEEEECCCcccCCCcEEEEeeeccchhcCCeEEEEEECccccCCCCEEEEEECCEEEEEEEeccCCCCCCCCCc
Confidence 55665442 123444444444555445678888887764 355678888877543 22333344444443
No 9
>KOG2770|consensus
Probab=100.00 E-value=8.6e-51 Score=398.05 Aligned_cols=339 Identities=45% Similarity=0.622 Sum_probs=302.1
Q ss_pred CCCCCCCcChHHHHHCCCEEEeeCCcccccccCCCChHHHHHHHhcCcEEEecCCceEEEEEcccHHHHHhhccccCCCC
Q psy4854 193 PSAEQRTPLYDLHLSHGGKMVPFAGFSMPVQYGAVSITASHLHTRSKVSVFDVSHMLQTVVTGKHREEWLESICVADVHE 272 (555)
Q Consensus 193 ~r~~r~spl~~~~~~~gA~f~~~~g~e~p~~f~~~~~~~E~~a~r~~v~l~DlS~~~~i~v~G~da~~fLq~l~t~dv~~ 272 (555)
.-.+++||||+.|.++|..+.+++||.+|..|...++.+++..+|+++++||+|||..+.|+|+|++.||+.+++.|+..
T Consensus 22 s~~~~~T~l~d~H~~~ggk~V~fag~smpvqy~d~s~~dshl~tr~n~~lfDVSHmlq~~v~G~d~v~fLes~ttad~~~ 101 (401)
T KOG2770|consen 22 SSELKRTPLYDFHVKLGGKMVPFAGYSMPVQYKDQSIIDSHLHTRENVSLFDVSHMLQSRVSGKDRVAFLESLTTADFEG 101 (401)
T ss_pred hhhcccCCChhhHhhcCCEEecccccccceeeccccchhhhhhhhhcceEEeehhheeeeecccchhHHhhhccccchhc
Confidence 34567799999999999999999999999999866899999999999999999999999999999999999999999999
Q ss_pred CCCCceEEeeeecCCcceEEEEEEEEecCCeEEEEecccchHHHHHHHHHHHhhhccCCCCEEEEEccCCCeEEEEEcCC
Q psy4854 273 LDPGKGTLSLFTNEQGGIQDDLIVTKTLEDSLFLVSNASRRKVDMDLMVAAQDRFKSLGKDIHLQFLSAEERGLIAVQGP 352 (555)
Q Consensus 273 l~~G~~~yt~~ln~~G~i~~d~~v~r~~~d~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~V~i~dvs~~~~~~i~v~GP 352 (555)
|++|+.+.|.|+||+|+++||..+.+..++++++++|++.++++...++.++..|+..+.||+++-+. +.+.+.+|||
T Consensus 102 L~~g~GtlsvFtne~ggiiDd~ii~k~~~~~ly~VsnAgC~ekd~~~~k~~~~a~ks~gkDv~~~~~~--~r~l~A~Qgp 179 (401)
T KOG2770|consen 102 LPEGSGTLSVFTNETGGIIDDLIITKVDENELYIVSNAGCQEKDEALLKDHFFAWKSKGKDVSWETLD--GRSLLALQGP 179 (401)
T ss_pred cCCCCceeEEEEcCCCceeeeeEEEeecCCEEEEEeccchHHHHHHHHHHHHHhhhhccceeeEEEec--ccchhhhcCh
Confidence 99999999999999999999999999999999999999999999999999988777667788888776 7899999999
Q ss_pred CHHHHHhhccc--cCCCCCcccceEeeeecCcc-EEEEecCccCCCeEEEEecCCcHHHHHHHHHcCCCeeecCchhhHh
Q psy4854 353 LSSTILQRHTD--LDLSSLYFMTSRPCTIAGIP-CTLTRAGYTGEDGVEISVPGEQCTHIVEALLSDEDVKLAGLGARDS 429 (555)
Q Consensus 353 ~A~~vL~~l~~--~dl~~l~~~~~~~~~i~g~~-v~i~R~~~~ge~G~eL~~~~~~a~~l~~~L~~ag~~~~~G~~a~~~ 429 (555)
.+.++|+++.+ .|++.++|+++....+.|.+ |++.|.||+||+|||+.+|.+.|.++|.+|++...++++|+.|+|+
T Consensus 180 ~~akvlq~l~~k~~DL~~l~fg~~~~~~~~G~~~~~vtr~gytgEDGfeisv~~~~Av~la~~LLa~~~vkp~Gl~ArDs 259 (401)
T KOG2770|consen 180 EAAKVLQKLLSKLGDLSKLPFGQSQVYDFKGGPGCRVTRGGYTGEDGFEISVPPEGAVDLAETLLANPVVKPAGLGARDS 259 (401)
T ss_pred HHHHHHHHhhccccchhcccccceEEEEecCCCceEEeccccccCCceEEecCCchhHHHHHHHhhCCceeecccchhhh
Confidence 99999999998 89999999999999998887 9999999999999999999999999999999998899999999999
Q ss_pred hh---------ccCCCC-CCcccccccccc-cccc--c-CCceeEEecc-----CCcEEEEEEeecCcc---ceEeeccc
Q psy4854 430 LS---------GDITLN-TPVPHGSLKLSN-DRFK--S-LGKDIHLQFL-----SPEERGLIAVQGPLS---STILQRHT 487 (555)
Q Consensus 430 lR---------~dl~~~-~P~E~gl~~~v~-~~K~--~-iG~eal~~~~-----~~~lv~l~~~~gp~a---~~v~~~~~ 487 (555)
|| +||+++ ||.|++|.|.+. ..++ | .|+++++++. ++|+|||.+..+|++ .+|+.+++
T Consensus 260 LRLeaGKOGyg~did~~~tpvEa~L~W~i~krrR~~~~f~Ga~~I~~qLk~~~~~~RrvGl~~~~~p~ar~gs~I~~~~g 339 (401)
T KOG2770|consen 260 LRLEAGLCLYGSDIDEETTPVEAGLSWVIGKRRRGTYDFPGAEVILKQLKDGGISRRRVGLNLSAKPPARSGSAIFVDDG 339 (401)
T ss_pred hhhhcCCcccCcccccccChhhheeeeeeeeccccccCCCcHHHHHHHhhcCCcceEEEeeeccCCCCCCCCCeeEcCCC
Confidence 99 899999 999999999864 4444 5 9999998886 289999988444766 67887642
Q ss_pred ccceeeEEEEeeeeecccCeeEEEEecccc-CCceEEEEeCCcchHHH
Q psy4854 488 DLDLSSLYFMTSRPCTIAGIPCTLTRAGYT-GEDGVEISVPGEQCTHI 534 (555)
Q Consensus 488 ~~~~t~~~~~~~~~~~~~~i~~~~~r~~y~-ge~g~EI~i~~~~~~~v 534 (555)
..++.++....+|..-+.|++.|+..+|. -+..++|.+.++.+++.
T Consensus 340 -~kVG~vTSg~~sptl~kniamgYV~k~~~~~Gtkv~v~vr~k~~~~~ 386 (401)
T KOG2770|consen 340 -TKVGQVTSGCPSPTLGKNIAMGYVKKGYHKIGTKVLVKVRNKLYPAE 386 (401)
T ss_pred -ceEeeEccCCCCCCcccceeEEEeeccccCCCCEEEEEecCcccceE
Confidence 24444444445666667788888888885 47789999988877654
No 10
>PF01571 GCV_T: Aminomethyltransferase folate-binding domain; InterPro: IPR006222 This is a family of glycine cleavage T-proteins, part of the glycine cleavage multienzyme complex (GCV) found in bacteria and the mitochondria of eukaryotes. GCV catalyses the catabolism of glycine in eukaryotes. The T-protein is an aminomethyl transferase 2.1.2.10 from EC that catalyses the following reaction: (6S)-tetrahydrofolate + S-aminomethyldihydrolipoylprotein = (6R)-5,10-methylenetetrahydrofolate + NH3 + dihydrolipoylprotein ; GO: 0004047 aminomethyltransferase activity, 0006546 glycine catabolic process, 0005737 cytoplasm; PDB: 3TFJ_B 3TFI_B 3TFH_A 1YX2_B 3GIR_A 3A8K_D 3A8I_B 3A8J_C 1VLO_A 1WOO_A ....
Probab=100.00 E-value=7.1e-36 Score=290.65 Aligned_cols=198 Identities=30% Similarity=0.478 Sum_probs=180.4
Q ss_pred EEecCCceEEEEEcccHHHHHhhccccCCCCCCCCceEEeeeecCCcceEEEEEEEEecCCeEEEEecccchHHHHHHHH
Q psy4854 242 VFDVSHMLQTVVTGKHREEWLESICVADVHELDPGKGTLSLFTNEQGGIQDDLIVTKTLEDSLFLVSNASRRKVDMDLMV 321 (555)
Q Consensus 242 l~DlS~~~~i~v~G~da~~fLq~l~t~dv~~l~~G~~~yt~~ln~~G~i~~d~~v~r~~~d~~~l~~~~~~~~~~~~~l~ 321 (555)
|||+|++++|+|+|+||.+|||+++||||+++++|+++|+++||+||+|++|++|+|.++++|+|+++++..+.+++||+
T Consensus 1 l~d~s~~~~i~v~G~Da~~fLq~~~t~di~~l~~g~~~~~~~l~~~G~v~~d~~v~~~~~~~~~l~~~~~~~~~~~~~L~ 80 (211)
T PF01571_consen 1 LFDLSHRGVIRVSGPDAAKFLQGLLTNDISKLPPGQARYTLFLNPKGRVLDDFFVYRLGDDEFLLIVPASAADALLEWLK 80 (211)
T ss_dssp EEE-TTSEEEEEESTTHHHHHHHHBSS-GTTS-TTBEEEEEEE-TTS-EEEEEEEEEEETTEEEEEECCTCHHHHHHHHH
T ss_pred CCCCCCcEEEEEECCCHHHHHHHhhhhhHHhhCCCceeEEEEECCCCcEEEEEEEEeecCceEEEEecchhHHHHHHHHH
Confidence 79999999999999999999999999999999999999999999999999999999999988999999999999999999
Q ss_pred HHHhhhccCCCCEEEEEccCCCeEEEEEcCCCHHHHHhhccccCCCCCcccceEeeeecCccEEEEecCccCCCeEEEEe
Q psy4854 322 AAQDRFKSLGKDIHLQFLSAEERGLIAVQGPLSSTILQRHTDLDLSSLYFMTSRPCTIAGIPCTLTRAGYTGEDGVEISV 401 (555)
Q Consensus 322 ~~~~~~~~~~~~V~i~dvs~~~~~~i~v~GP~A~~vL~~l~~~dl~~l~~~~~~~~~i~g~~v~i~R~~~~ge~G~eL~~ 401 (555)
+|+.. .+|+|.|++ ++++.+.|+||.|.++|+++++.+.+.++++++... +++ ++++.|.+++|+.||+|++
T Consensus 81 ~~~~~-----~~v~i~~~~-~~~~~~~l~Gp~a~~~l~~~~~~~~~~~~~~~~~~~-~~~-~~~~~r~~~~g~~g~~l~~ 152 (211)
T PF01571_consen 81 KYILR-----SDVEIEDVS-DDLAVLGLQGPKAAEVLQKLFDEDIEPLPFFSSREV-GDG-PVLVARTGRTGELGYELIV 152 (211)
T ss_dssp HHHHH-----SS-EEEEET-TTEEEEEEESTTHHHHHHHHSSSSGTTSHTTBEEEE-ETT-EEEEESCBSSSSSEEEEEE
T ss_pred Hhccc-----cCcEEEEcc-cceeEEEEEcchhhHHHHHhcccccccccccceeee-cCc-eEEEEecccCCCCCEEEEe
Confidence 99863 789999999 458999999999999999999777778999988877 777 8999999999999999999
Q ss_pred cCCcHHHHHHHHHcCCC---eeecCchhhHhhh---------ccCCCC-CCcccccccc
Q psy4854 402 PGEQCTHIVEALLSDED---VKLAGLGARDSLS---------GDITLN-TPVPHGSLKL 447 (555)
Q Consensus 402 ~~~~a~~l~~~L~~ag~---~~~~G~~a~~~lR---------~dl~~~-~P~E~gl~~~ 447 (555)
+.+.+.++|++|+++|. +.++|..+++++| +|+++. +|+|+||+|+
T Consensus 153 ~~~~~~~~~~~l~~~g~~~g~~~~g~~~~~~lRie~G~p~~~~d~~~~~~P~E~~l~w~ 211 (211)
T PF01571_consen 153 PAEEAEALWDALLEAGKDFGVRPAGLEAWEALRIEAGIPLYGQDLDEEFLPQEANLDWA 211 (211)
T ss_dssp EGGGHHHHHHHHHHHHGGGTEEEEEHHHHHHHHHHTT---TTTSSCTTS-TTTTTGGGG
T ss_pred ccchhHHHHHHHHHHHhccCceeccHHHHHHHHHhcCCcccccccCCCCCHHHcCCCcC
Confidence 99999999999999875 8999999999999 899989 9999999995
No 11
>PRK09559 putative global regulator; Reviewed
Probab=100.00 E-value=1.8e-31 Score=276.08 Aligned_cols=216 Identities=13% Similarity=0.109 Sum_probs=180.2
Q ss_pred cEEEecCCceEEEEEcccHHHHHhhccccCCCCCCCCceEEeeeecCCcceEEEEEEEEecCCeEEEEecccchHHHHHH
Q psy4854 240 VSVFDVSHMLQTVVTGKHREEWLESICVADVHELDPGKGTLSLFTNEQGGIQDDLIVTKTLEDSLFLVSNASRRKVDMDL 319 (555)
Q Consensus 240 v~l~DlS~~~~i~v~G~da~~fLq~l~t~dv~~l~~G~~~yt~~ln~~G~i~~d~~v~r~~~d~~~l~~~~~~~~~~~~~ 319 (555)
..++|+|+++.|.|+|+||.+|||+++||||.++++|+++|+++||+||||++|++|++.++ +|+|+++++..+.+++|
T Consensus 19 ~~l~~L~~~g~i~v~G~Da~~FLqg~~T~Dv~~L~~g~~~y~~~~n~kGril~d~~v~~~~~-~~~l~~~~~~~~~~~~~ 97 (327)
T PRK09559 19 LTLISLDDWALATITGADSEKYLQGQVTADVSQLTEDQHLLAAHCDAKGKMWSNLRLFRRGD-GFAWIERRSVRENQLTE 97 (327)
T ss_pred eEEEcCccceEEEEECCcHHHHhcccccccccccCCCCeeEEEEECCCCcEEEEEEEEEeCC-eEEEEeChhhhHHHHHH
Confidence 78999999999999999999999999999999999999999999999999999999999975 59999999999999999
Q ss_pred HHHHHhhhccCCCCEEEEEccCCCeEEEEEcCCCHHHHHhhccc-cCCCCCcccceEeeeecCccEEEEecCccCCCeEE
Q psy4854 320 MVAAQDRFKSLGKDIHLQFLSAEERGLIAVQGPLSSTILQRHTD-LDLSSLYFMTSRPCTIAGIPCTLTRAGYTGEDGVE 398 (555)
Q Consensus 320 l~~~~~~~~~~~~~V~i~dvs~~~~~~i~v~GP~A~~vL~~l~~-~dl~~l~~~~~~~~~i~g~~v~i~R~~~~ge~G~e 398 (555)
|++|+. .++|+|.+.+ +++.++++||+|.++|+.++. .+...+++.. ... ..+.+.+ ..+.||+
T Consensus 98 L~ky~~-----~~kV~i~~~~--~~~~i~l~Gp~a~~~l~~~~~~~~~~~~~~~~-----~~~--~~~~~~~-~~~~g~e 162 (327)
T PRK09559 98 LKKYAV-----FSKVTIAPDD--ERVLLGVAGFQARAALANLFSELPDAEKPVVQ-----EGA--TTLLWFE-HPAERFL 162 (327)
T ss_pred Hhhccc-----ceEEEEEeCC--cEEEEEEECccHHHHHHHhcccCCCcCcceEe-----cCC--eEEEEec-CCCCeEE
Confidence 999986 3689998744 789999999999999998874 2222333221 111 2344433 3567999
Q ss_pred EEecCCcHHHHHHHHHcCCCeeecCchhhHhhh---------ccCCCC-CCccccccc--cccccccc-CCceeEEecc-
Q psy4854 399 ISVPGEQCTHIVEALLSDEDVKLAGLGARDSLS---------GDITLN-TPVPHGSLK--LSNDRFKS-LGKDIHLQFL- 464 (555)
Q Consensus 399 L~~~~~~a~~l~~~L~~ag~~~~~G~~a~~~lR---------~dl~~~-~P~E~gl~~--~v~~~K~~-iG~eal~~~~- 464 (555)
|+++.+.+..+|+.|.+.. .+++...|+.+| .|+++. +|+|+||+| .|+|+|+| +|||+++|++
T Consensus 163 i~~~~~~~~~l~~~L~~~~--~~~~~~~w~~lrIeaG~p~~g~e~~e~~~Pqe~nL~~l~~Vsf~KGCY~GQE~vAR~~~ 240 (327)
T PRK09559 163 LVTDEATANMLTEKLRGEA--QLNNSQQWLALDIEAGFPVIDAANSGQFIPQATNLQALGGISFKKGCYTGQEMVARAKF 240 (327)
T ss_pred EEechHHHHHHHHHhhhcC--ccCCHHHHHHHHHHcCCcccccccccccCchhhChhhcCceeecCcccccHHHHHHHHH
Confidence 9999999999999998743 235556677777 889999 999999995 79999999 9999999886
Q ss_pred --C--CcEEEEEE
Q psy4854 465 --S--PEERGLIA 473 (555)
Q Consensus 465 --~--~~lv~l~~ 473 (555)
. |+++++.+
T Consensus 241 ~G~~krrl~~l~~ 253 (327)
T PRK09559 241 RGANKRALWWLAG 253 (327)
T ss_pred cCCCceeEEEEec
Confidence 1 67788876
No 12
>KOG2770|consensus
Probab=99.92 E-value=9.1e-25 Score=215.17 Aligned_cols=119 Identities=48% Similarity=0.852 Sum_probs=112.0
Q ss_pred cccceeeeeccccCCCCCCCcHHHHHHHHHcC-CCeEEEEEEeCC-CCCCCCCEEEcCCCcEEEEEeeccccCCCCCeeE
Q psy4854 3 IYSRLLIFPGKRRRETGGFPGASIIQSQIKSG-VSRKRTGFTSTG-VPIRPGYEIFNANDQRVGAITSGCPSPSLKKNIA 80 (555)
Q Consensus 3 ~~~~l~w~v~~~~~~k~~fiG~~al~~~~~~g-~~~~lvgl~~~~-~~~~~g~~v~~~~g~~vG~vTS~~~SP~l~~~I~ 80 (555)
+-++|.|.|.++||.+.||.|.+.+++|.+++ ++||+|||.+.+ +++|+|.+|++.+|++||.|||||.||+|++|||
T Consensus 280 vEa~L~W~i~krrR~~~~f~Ga~~I~~qLk~~~~~~RrvGl~~~~~p~ar~gs~I~~~~g~kVG~vTSg~~sptl~knia 359 (401)
T KOG2770|consen 280 VEAGLSWVIGKRRRGTYDFPGAEVILKQLKDGGISRRRVGLNLSAKPPARSGSAIFVDDGTKVGQVTSGCPSPTLGKNIA 359 (401)
T ss_pred hhheeeeeeeeccccccCCCcHHHHHHHhhcCCcceEEEeeeccCCCCCCCCCeeEcCCCceEeeEccCCCCCCccccee
Confidence 45899999999998888999999999999977 799999999998 4579999999666999999999999999999999
Q ss_pred EEEecCCccCCCCEEEEEECCeEEeEEEEeCCCccCccccC
Q psy4854 81 MGYIEPAYSKVGVELWVRVRDKRVDVKVTKMPFVKSNYYTP 121 (555)
Q Consensus 81 ~a~v~~~~~~~g~~~~v~~~~~~~~a~v~~~Pf~~~~~~~~ 121 (555)
||||+..++++||++.|.+|++.+++.|+++||++.+||+.
T Consensus 360 mgYV~k~~~~~Gtkv~v~vr~k~~~~~VskmPfV~t~yy~~ 400 (401)
T KOG2770|consen 360 MGYVKKGYHKIGTKVLVKVRNKLYPAEVSKMPFVPTNYYKS 400 (401)
T ss_pred EEEeeccccCCCCEEEEEecCcccceEEEecccccccCCCC
Confidence 99999999999999999999999999999999999999986
No 13
>COG0354 Predicted aminomethyltransferase related to GcvT [General function prediction only]
Probab=99.90 E-value=1.9e-23 Score=211.34 Aligned_cols=221 Identities=17% Similarity=0.139 Sum_probs=163.9
Q ss_pred HHhcCcEEEecCCceEEEEEcccHHHHHhhccccCCCCCCCCceEEeeeecCCcceEEEEEEEEecCCeEEEEecccchH
Q psy4854 235 HTRSKVSVFDVSHMLQTVVTGKHREEWLESICVADVHELDPGKGTLSLFTNEQGGIQDDLIVTKTLEDSLFLVSNASRRK 314 (555)
Q Consensus 235 a~r~~v~l~DlS~~~~i~v~G~da~~fLq~l~t~dv~~l~~G~~~yt~~ln~~G~i~~d~~v~r~~~d~~~l~~~~~~~~ 314 (555)
.-.+...++++++++.|+|+|+|+.+|||+|+||||..++.|+.+|+.+||+||+|++++.+++.+ |.|++.++.+..+
T Consensus 9 ~~~~~~~l~~l~~~~li~V~G~D~~kfLq~q~T~dv~~l~~g~~~~~a~l~~qGrv~~~~~~~~~~-d~~~l~~~~~~~~ 87 (305)
T COG0354 9 SAETPLTLVLLSDRALIRVSGADAEKFLQGQLTNDVSALAEGQSTLAALLTPQGRVLFDFRLYRRG-DGLYLDTDKSVLE 87 (305)
T ss_pred ccccccEEEecCCceeEEEECCCHHHHHhHHHHHhHhhcccCceeeeeEECCCceEEEEEEEEEeC-CeEEEEcchhhcH
Confidence 344677899999999999999999999999999999999999999999999999999999999998 6899999999999
Q ss_pred HHHHHHHHHHhhhccCCCCEEEEEccCCCeEEEEEcCCCHHHHHhhccccCCCCCcccceEeeeecCccEEEEecCccCC
Q psy4854 315 VDMDLMVAAQDRFKSLGKDIHLQFLSAEERGLIAVQGPLSSTILQRHTDLDLSSLYFMTSRPCTIAGIPCTLTRAGYTGE 394 (555)
Q Consensus 315 ~~~~~l~~~~~~~~~~~~~V~i~dvs~~~~~~i~v~GP~A~~vL~~l~~~dl~~l~~~~~~~~~i~g~~v~i~R~~~~ge 394 (555)
..+.||++|+. .++|++.+.+ ...+++.|+++...+..... .+|..... .
T Consensus 88 ~~l~~L~kY~~-----~skv~i~~~~---~~~i~v~~~~~~~~~~~~~~----~~~~~~~~------------------~ 137 (305)
T COG0354 88 ALLKRLKKYAL-----RSKVTIAPSD---LVLIGVAGEEAAEALAVDFP----ALPKQWRA------------------A 137 (305)
T ss_pred HHHHHHHhcee-----cccceEecCC---ceeEEEeeccccchhhcccc----cccccccc------------------c
Confidence 99999999985 3789998874 78999999999887766543 12211100 0
Q ss_pred CeEEEEecCCcHHHHHHHHHcCCCeeecCchhhHhhh---------ccCCCC-CCcccccccc--ccccccc-CCceeEE
Q psy4854 395 DGVEISVPGEQCTHIVEALLSDEDVKLAGLGARDSLS---------GDITLN-TPVPHGSLKL--SNDRFKS-LGKDIHL 461 (555)
Q Consensus 395 ~G~eL~~~~~~a~~l~~~L~~ag~~~~~G~~a~~~lR---------~dl~~~-~P~E~gl~~~--v~~~K~~-iG~eal~ 461 (555)
..+++..+......+.......+ ....+..+|+.+| .++++. +|+|.|+++. |||+||| +|||+++
T Consensus 138 ~~~~l~~~~~~~~~~~~~~~~~~-~~~~~~~~w~~lri~~G~p~~~~~~~~~~iPqevnl~~~~gISF~KGCYvGQE~VA 216 (305)
T COG0354 138 GRFLLDLPVPRLLQLVPKLALPQ-ALEASLDQWLALRIRAGIPGIDDATSEDFIPQEVNLDALGGISFKKGCYVGQETVA 216 (305)
T ss_pred ccceeccchhhhhhhhhhccccc-cccccHHHHHHHHHHcCCCcccchhccccChhhhCccccCcEeccCcccccHHHhh
Confidence 11222222111111111111111 2233444555555 456666 9999999876 7999999 9999999
Q ss_pred ecc----C-CcEEEEEEeec--Ccc-ceEeecccc
Q psy4854 462 QFL----S-PEERGLIAVQG--PLS-STILQRHTD 488 (555)
Q Consensus 462 ~~~----~-~~lv~l~~~~g--p~a-~~v~~~~~~ 488 (555)
|.+ + |+++-+.+ ++ |++ .+|..++..
T Consensus 217 R~~~rG~~kRrl~~l~~-d~~~p~~g~~i~a~~~~ 250 (305)
T COG0354 217 RAKYRGTNKRRLVLLAL-DASLPEAGEEILAGGEE 250 (305)
T ss_pred HHHhcCCCceeEEEEEe-CCCCCCCCCeeecCCCc
Confidence 997 2 77777777 66 444 677765543
No 14
>COG0404 GcvT Glycine cleavage system T protein (aminomethyltransferase) [Amino acid transport and metabolism]
Probab=99.89 E-value=5.2e-23 Score=213.86 Aligned_cols=116 Identities=32% Similarity=0.472 Sum_probs=106.0
Q ss_pred cccceeeeeccccCCCCCCCcHHHHHHHHHcCCCeEEEEEEeCCC--CCCCCCEEEcCCCc-EEEEEeeccccCCCCCee
Q psy4854 3 IYSRLLIFPGKRRRETGGFPGASIIQSQIKSGVSRKRTGFTSTGV--PIRPGYEIFNANDQ-RVGAITSGCPSPSLKKNI 79 (555)
Q Consensus 3 ~~~~l~w~v~~~~~~k~~fiG~~al~~~~~~g~~~~lvgl~~~~~--~~~~g~~v~~~~g~-~vG~vTS~~~SP~l~~~I 79 (555)
+.++|+|+|+++| .|||||++|++++.+|+.|++|||++++. .+++|++|++.+|+ .||+||||+|||+|+++|
T Consensus 259 ~eagl~~~v~~~k---~dFiGk~al~~~k~~g~~r~lVgl~~~~~~~~~~~g~~v~~~~g~~~vG~VTSg~~Sptlg~~I 335 (379)
T COG0404 259 LEAGLGWAVKLDK---DDFIGKAALLREKAKGVRRKLVGLKLDDKGPVLRGGEPVLDADGEVEVGEVTSGTFSPTLGKSI 335 (379)
T ss_pred hhcCcceEecCCC---cCCcCHHHHHhhhhcCCceEEEEEEEcCCCCCCCCCCeEEecCCCEeEEEEeeccccccCCCee
Confidence 3679999999854 59999999999999999778999999884 45999999866788 499999999999999999
Q ss_pred EEEEecCCccCCCCEEEEEECCeEEeEEEEeCCCccCccccC
Q psy4854 80 AMGYIEPAYSKVGVELWVRVRDKRVDVKVTKMPFVKSNYYTP 121 (555)
Q Consensus 80 ~~a~v~~~~~~~g~~~~v~~~~~~~~a~v~~~Pf~~~~~~~~ 121 (555)
|||||+.++++.|+++.|+++++.++|+|+++|||++++.|.
T Consensus 336 Ala~v~~~~~~~G~~~~v~i~~~~~~a~V~~~pf~dp~~~r~ 377 (379)
T COG0404 336 ALAYVDSDYAKPGTELEVEIRGKRVPARVVKPPFYDPEGERL 377 (379)
T ss_pred EEEEechhhccCCcEEEEEECCeEEEEEEecCCCcCcccccc
Confidence 999999999999999999999999999999999999987765
No 15
>PLN02319 aminomethyltransferase
Probab=99.88 E-value=1.5e-22 Score=215.29 Aligned_cols=119 Identities=50% Similarity=0.832 Sum_probs=108.4
Q ss_pred cccceeeeeccccCCCCCCCcHHHHHHHHHcCCCeEEEEEEeCCCCCCCCCEEEcCCCcEEEEEeeccccCCCCCeeEEE
Q psy4854 3 IYSRLLIFPGKRRRETGGFPGASIIQSQIKSGVSRKRTGFTSTGVPIRPGYEIFNANDQRVGAITSGCPSPSLKKNIAMG 82 (555)
Q Consensus 3 ~~~~l~w~v~~~~~~k~~fiG~~al~~~~~~g~~~~lvgl~~~~~~~~~g~~v~~~~g~~vG~vTS~~~SP~l~~~I~~a 82 (555)
.-++|+|+|+..+.+|+||||||+|++++.+|++||+|||..++.++++|++|++.+|+.||.||||+|||+++++||||
T Consensus 285 ~EagL~~~v~~~~~~Kg~fiGqEalar~~~~g~~rrlvgl~~~~~~~~~g~~v~~~~g~~VG~VTS~~~Sp~l~~~Iala 364 (404)
T PLN02319 285 VEAGLAWTIGKRRRAEGGFLGADVILKQLKEGVSRRRVGFISSGAPARSHSEILDESGEKIGEVTSGGFSPCLKKNIAMG 364 (404)
T ss_pred HHCCccceecccccCCCCCcCHHHHHHHHhcCCCeEEEEEEECCccCCCCCEEEeCCCCEEEEEeeecccccCCceEEEE
Confidence 35899999986554689999999999999999999999997655567899999866799999999999999999999999
Q ss_pred EecCCccCCCCEEEEEECCeEEeEEEEeCCCccCccccC
Q psy4854 83 YIEPAYSKVGVELWVRVRDKRVDVKVTKMPFVKSNYYTP 121 (555)
Q Consensus 83 ~v~~~~~~~g~~~~v~~~~~~~~a~v~~~Pf~~~~~~~~ 121 (555)
||+.+++.+|++++|+++|+.++|+|+++||+++.|+++
T Consensus 365 ~v~~~~~~~g~~v~v~~~g~~~~a~v~~~Pf~~~~~~~~ 403 (404)
T PLN02319 365 YVKSGFHKAGTEVKVEVRGKMYDAVVTKMPFVPTKYYKP 403 (404)
T ss_pred EEChhhcCCCCEEEEEECCeEEEEEEECCCCcCcccCCC
Confidence 999999999999999999999999999999999988776
No 16
>PF08669 GCV_T_C: Glycine cleavage T-protein C-terminal barrel domain; InterPro: IPR013977 This entry shows glycine cleavage T-proteins, part of the glycine cleavage multienzyme complex (GCV) found in bacteria and the mitochondria of eukaryotes. GCV catalyses the catabolism of glycine in eukaryotes. The T-protein is an aminomethyl transferase. ; PDB: 3ADA_A 1VRQ_A 1X31_A 3AD9_A 3AD8_A 3AD7_A 3GIR_A 1WOO_A 1WOS_A 1WOR_A ....
Probab=99.88 E-value=5.2e-22 Score=168.36 Aligned_cols=93 Identities=41% Similarity=0.687 Sum_probs=84.6
Q ss_pred CCCCcHHHHHHHHHcCCC-eEEEEEEeCC-CCCCCCCEEEcCCCcEEEEEeeccccCCCCCeeEEEEecCCccCCCCEEE
Q psy4854 19 GGFPGASIIQSQIKSGVS-RKRTGFTSTG-VPIRPGYEIFNANDQRVGAITSGCPSPSLKKNIAMGYIEPAYSKVGVELW 96 (555)
Q Consensus 19 ~~fiG~~al~~~~~~g~~-~~lvgl~~~~-~~~~~g~~v~~~~g~~vG~vTS~~~SP~l~~~I~~a~v~~~~~~~g~~~~ 96 (555)
+|||||++|++++.+|+. |+||||.+++ .+++.|++|+..+|+.||.|||++|||+++++||||||+.+++.+|++++
T Consensus 1 gdfiG~eal~r~~~~g~~rr~lv~l~~~~~~~~~~g~~v~~~~g~~vG~vTS~~~sp~~~~~Iala~v~~~~~~~g~~l~ 80 (95)
T PF08669_consen 1 GDFIGQEALARQKARGVKRRRLVGLTLDGDAPPRGGEPVYDEDGKPVGRVTSGAYSPTLGKNIALAYVDREYAEPGTELE 80 (95)
T ss_dssp S-STTHHHHHHHHHHTTS-EEEEEEEESSSS--STTCEEEETTTEEEEEEEEEEEETTTTEEEEEEEEEGGGGSTTSEEE
T ss_pred CCcCCHHHHHHHHhcCCCceEEEEEEECCccCCCCCCEEEECCCcEEeEEEEEeECCCCCceEEEEEECHHHcCCCCEEE
Confidence 589999999999999996 9999999987 46799999995599999999999999999999999999999999999999
Q ss_pred EEECCeEEeEEEEeC
Q psy4854 97 VRVRDKRVDVKVTKM 111 (555)
Q Consensus 97 v~~~~~~~~a~v~~~ 111 (555)
|+++|+.++|+|+++
T Consensus 81 v~~~g~~~~a~v~~~ 95 (95)
T PF08669_consen 81 VEIRGKRVPATVVKM 95 (95)
T ss_dssp EEETTEEEEEEEE-S
T ss_pred EEECCEEEEEEEeCc
Confidence 999999999999975
No 17
>PRK13579 gcvT glycine cleavage system aminomethyltransferase T; Provisional
Probab=99.88 E-value=3.4e-22 Score=210.50 Aligned_cols=118 Identities=36% Similarity=0.662 Sum_probs=108.0
Q ss_pred cccceeeeeccccCCCCCCCcHHHHHHHHHcCCCeEEEEEEeCCC-CCCCCCEEEcCCCcEEEEEeeccccCCCCCeeEE
Q psy4854 3 IYSRLLIFPGKRRRETGGFPGASIIQSQIKSGVSRKRTGFTSTGV-PIRPGYEIFNANDQRVGAITSGCPSPSLKKNIAM 81 (555)
Q Consensus 3 ~~~~l~w~v~~~~~~k~~fiG~~al~~~~~~g~~~~lvgl~~~~~-~~~~g~~v~~~~g~~vG~vTS~~~SP~l~~~I~~ 81 (555)
..++|+|+|+..+.+|+||+|||+|++++..|+.+|++||.+++. ++++|++|+..+|++||+|||++|||+++++|||
T Consensus 252 ~E~gL~~~v~~~~~~KgcyiGqEalar~~~~G~~kr~v~l~~~~~~~~~~g~~v~~~~g~~VG~VtS~~~sp~l~~~ial 331 (370)
T PRK13579 252 VEAALEWAIQKARREAGGFPGAKAILAALAKGASRRRVGLKPEGRAPVREGAPLFDDAGTEIGTVTSGGFGPSVGGPVAM 331 (370)
T ss_pred HHCCccceecCCCCCCCCCcCHHHHHHHHhcCCCeEEEEEEECCccCCCCCCEEEcCCCceEEEEeecCcchhcCCeEEE
Confidence 357899999987767899999999999999999999999999874 4688999984346999999999999999999999
Q ss_pred EEecCCccCCCCEEEEEECCeEEeEEEEeCCCccCcccc
Q psy4854 82 GYIEPAYSKVGVELWVRVRDKRVDVKVTKMPFVKSNYYT 120 (555)
Q Consensus 82 a~v~~~~~~~g~~~~v~~~~~~~~a~v~~~Pf~~~~~~~ 120 (555)
|||+++++++|++|+|+++|+.++|+|+.+||+++.|+|
T Consensus 332 a~v~~~~~~~g~~v~v~~~g~~~~a~v~~~Pf~~~~~~~ 370 (370)
T PRK13579 332 GYVPASLAAPGTAVFAEVRGKRLPVTVHALPFVPHRYKR 370 (370)
T ss_pred EEEChhhcCCCCEEEEEECCEEEEEEEEcCCcccCCccC
Confidence 999999999999999999999999999999999998765
No 18
>PRK12486 dmdA putative dimethyl sulfoniopropionate demethylase; Reviewed
Probab=99.83 E-value=1.8e-20 Score=196.85 Aligned_cols=109 Identities=23% Similarity=0.273 Sum_probs=97.8
Q ss_pred cccceeeeeccccCCCCCCCcHHHHHHHHHcCCCeEEEEEEeCCC-CCCCC--CEEEcCCCcEEEEEeeccccCCCCCee
Q psy4854 3 IYSRLLIFPGKRRRETGGFPGASIIQSQIKSGVSRKRTGFTSTGV-PIRPG--YEIFNANDQRVGAITSGCPSPSLKKNI 79 (555)
Q Consensus 3 ~~~~l~w~v~~~~~~k~~fiG~~al~~~~~~g~~~~lvgl~~~~~-~~~~g--~~v~~~~g~~vG~vTS~~~SP~l~~~I 79 (555)
+-++|+|+|+++| . .|||||+||++++++|++||+|||.+++. +++.+ .+|+ .+|+.||+|||++|||+|+++|
T Consensus 257 ~EagL~~~v~~~k-~-~~FiGkeal~r~~~~g~~rrlvgl~~~~~~~~~~~~~~~V~-~~g~~VG~vTS~~~sp~l~~~I 333 (368)
T PRK12486 257 HECGLGRFCNTQT-D-IGCIGKDALLRVAKEGPQKQIRGIKIGGERIPPCDRAWPLL-AGDNRVGQVTSAAYSPDFQTNV 333 (368)
T ss_pred HHCCCceEEcCCC-C-CCCcCHHHHHHHHhcCCCeEEEEEEECCCCCCCcCCceEEe-eCCeEEEEEeccCcCcccCceE
Confidence 4589999999854 1 38999999999999999999999999985 44533 5687 6899999999999999999999
Q ss_pred EEEEecCCccCCCCEEEEEECCeEEeEEEEeCCCc
Q psy4854 80 AMGYIEPAYSKVGVELWVRVRDKRVDVKVTKMPFV 114 (555)
Q Consensus 80 ~~a~v~~~~~~~g~~~~v~~~~~~~~a~v~~~Pf~ 114 (555)
|||||+.+++.+|++|+|+++++.++|+|+++||+
T Consensus 334 ala~v~~~~~~~g~~l~v~~~~~~~~a~v~~~Pf~ 368 (368)
T PRK12486 334 AIGMVRMTHWDPGTGLEVETPDGMRPATVREGFWI 368 (368)
T ss_pred EEEEEChhhcCCCCEEEEEECCceEEEEEeCCCCC
Confidence 99999999989999999999999999999999997
No 19
>KOG2844|consensus
Probab=99.79 E-value=1.9e-19 Score=191.29 Aligned_cols=184 Identities=23% Similarity=0.288 Sum_probs=154.2
Q ss_pred CCCEEEEEccCCCeEEEEEcCCCHHHHHhhccccCCCC---CcccceEeeeecCc--cEEEEecCccCCCeEEEEecCCc
Q psy4854 331 GKDIHLQFLSAEERGLIAVQGPLSSTILQRHTDLDLSS---LYFMTSRPCTIAGI--PCTLTRAGYTGEDGVEISVPGEQ 405 (555)
Q Consensus 331 ~~~V~i~dvs~~~~~~i~v~GP~A~~vL~~l~~~dl~~---l~~~~~~~~~i~g~--~v~i~R~~~~ge~G~eL~~~~~~ 405 (555)
+..|.+.|+| .++++.|.|++|.++|+.||++|+.. ....+++...-+|. +++++| .++.+|.++.+..+
T Consensus 515 rerv~v~DmS--~F~Kf~i~G~da~e~ld~LfSanv~~~vg~tv~T~mln~~Gg~e~D~tvsr---l~~~~f~mia~t~q 589 (856)
T KOG2844|consen 515 RERVGVFDMS--SFGKFDITGQDAVELLDYLFSANVDVPVGSTVYTGMLNPKGGYEADCTVSR---LSPRGFFMIAGTIQ 589 (856)
T ss_pred HhhceEeecc--ccceeeeccHHHHHHHHHHhhcCCCCCCCceeeeeeecCCCCeEeeeeeee---ecCCceEEEccchh
Confidence 5789999999 89999999999999999999888763 23344555555654 699999 67899999999988
Q ss_pred HHHHHHHHHcCCCeeecCchhhHhhhccCCCCCCcccccccccccccccCCceeEEeccCCcEEEEEEeecCccceEeec
Q psy4854 406 CTHIVEALLSDEDVKLAGLGARDSLSGDITLNTPVPHGSLKLSNDRFKSLGKDIHLQFLSPEERGLIAVQGPLSSTILQR 485 (555)
Q Consensus 406 a~~l~~~L~~ag~~~~~G~~a~~~lR~dl~~~~P~E~gl~~~v~~~K~~iG~eal~~~~~~~lv~l~~~~gp~a~~v~~~ 485 (555)
+.+.|..|.+. +. | -|.++.+++.+..+..+-+ +||.++.|+++
T Consensus 590 q~~~~~wi~k~------------------------------~~---~--~~~~v~l~DvT~~~~~l~i-~GP~sR~vLqe 633 (856)
T KOG2844|consen 590 QLHDLSWIKKE------------------------------MP---K--GGSNVELKDVTDELGALSI-IGPQSRKVLQE 633 (856)
T ss_pred hhhhHHHHHHH------------------------------hh---c--cCCceeeeechhhhceeee-cCchHHHHHHh
Confidence 88877776542 11 1 2445666666456666666 99999999999
Q ss_pred ccccceee--EEEEeeeeecccCeeEEEEeccccCCceEEEEeCCcchHHHHHhccc---CCCCcccccccccCC
Q psy4854 486 HTDLDLSS--LYFMTSRPCTIAGIPCTLTRAGYTGEDGVEISVPGEQCTHIVEALLS---DEDVKLAGLGARDSL 555 (555)
Q Consensus 486 ~~~~~~t~--~~~~~~~~~~~~~i~~~~~r~~y~ge~g~EI~i~~~~~~~v~~~l~~---~~g~~~~G~~A~~sl 555 (555)
.++.++++ ++|++.+.+.+|+++++++|.+|+||+||||+||.+++.+||++||+ ++|++++|++|+++|
T Consensus 634 lt~~dls~~~fp~~~~k~l~vg~~girairis~~GELG~~Lyip~e~~~~vY~~im~AG~~~~l~naGyya~~aL 708 (856)
T KOG2844|consen 634 LTDADLSDDHFPFLTTKELKVGNAGIRAIRISHTGELGWELYIPNEDAVAVYRAIMNAGQEEGLQNAGYYALRAL 708 (856)
T ss_pred ccCCCCCccccCcceeeeeeccccceEEEEEEeccccceEEEechHHHHHHHHHHHhhhhhhccccchhHHHHHH
Confidence 99888875 89999999999999999999999999999999999999999999999 899999999999986
No 20
>TIGR00528 gcvT glycine cleavage system T protein. Eukaryotic forms are mitochondrial and have an N-terminal transit peptide.
Probab=99.78 E-value=1.1e-18 Score=183.44 Aligned_cols=111 Identities=33% Similarity=0.510 Sum_probs=101.5
Q ss_pred ccceeeeeccccCCCCCCCcHHHHHHHHHcCCCeEEEEEEeCC-CCCCCCCEEEcCCC-cEEEEEeeccccCCCCCeeEE
Q psy4854 4 YSRLLIFPGKRRRETGGFPGASIIQSQIKSGVSRKRTGFTSTG-VPIRPGYEIFNAND-QRVGAITSGCPSPSLKKNIAM 81 (555)
Q Consensus 4 ~~~l~w~v~~~~~~k~~fiG~~al~~~~~~g~~~~lvgl~~~~-~~~~~g~~v~~~~g-~~vG~vTS~~~SP~l~~~I~~ 81 (555)
-++|+|+|+.++ +|+||+|||+|++++..|..||+||+.+.+ .++..|++|+..+| +.||.|||++|||+++++|||
T Consensus 248 E~gl~~~v~~~f-kKgcy~GqE~lar~~~~G~~krlv~l~~~~~~~~~~g~~v~~~~g~~~vG~vtS~~~s~~~g~~ial 326 (361)
T TIGR00528 248 EAGLGWTIAWEP-AKRDFIGRAVLEEQKENGTEKKLVGLEMLEKGIARNGYPVFFTNGNQHVGIVTSGTFSPTLGKNIGL 326 (361)
T ss_pred HCCcccEEecCC-CCCCCcCHHHHHhHHhcCCCeEEEEEEECCCcCCCCCCEEEeCCCCeeEEEEeecCcchhcCceEEE
Confidence 479999999875 478999999999999999999999999876 35688999984356 999999999999999999999
Q ss_pred EEecCCccCCCCEEEEEECCeEEeEEEEeCCCcc
Q psy4854 82 GYIEPAYSKVGVELWVRVRDKRVDVKVTKMPFVK 115 (555)
Q Consensus 82 a~v~~~~~~~g~~~~v~~~~~~~~a~v~~~Pf~~ 115 (555)
|||+.+++++|++|+|++.|+.++|+|+.+||++
T Consensus 327 a~v~~~~~~~g~~~~v~~~g~~~~a~v~~~p~~~ 360 (361)
T TIGR00528 327 AYVPSETEKIGTTLIVQIRNKEYPIKVVKPPFVR 360 (361)
T ss_pred EEEChhhcCCCCEEEEEECCeEEEEEEecCCCcC
Confidence 9999999999999999999999999999999985
No 21
>TIGR01375 soxG sarcosine oxidase, gamma subunit family, heterotetrameric form. Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms.
Probab=99.78 E-value=2.4e-18 Score=158.62 Aligned_cols=117 Identities=22% Similarity=0.264 Sum_probs=107.2
Q ss_pred EEEEEEecCCeEEEEecccchHHHHHHHHHHHhhhccCCCCEEEEEccCCCeEEEEEcCCCHHHHHhhccccCCCC--Cc
Q psy4854 293 DLIVTKTLEDSLFLVSNASRRKVDMDLMVAAQDRFKSLGKDIHLQFLSAEERGLIAVQGPLSSTILQRHTDLDLSS--LY 370 (555)
Q Consensus 293 d~~v~r~~~d~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~V~i~dvs~~~~~~i~v~GP~A~~vL~~l~~~dl~~--l~ 370 (555)
+.+|+|+++|+|+|+++++..+++++||++++. +.+|.++|+| ++++.|.|+||+|+++|++++..|++. +|
T Consensus 33 ~~~v~rlg~d~~llv~~~~~~~~~~~~l~~~~~-----~~~v~v~d~s-~~~~~l~lqGP~A~~vL~~l~~~dl~~~~~~ 106 (152)
T TIGR01375 33 EISVLWLGPDEWLIIAPQPEGAVLMAALAAALG-----PEPHAVVDLS-GGRTALRISGPMAEEVLAKGCAVDLSLSAFP 106 (152)
T ss_pred CeEEEEEcCCEEEEEcCccchHHHHHHHHHHhC-----CCccEEEEec-CCEEEEEEEChhHHHHHHhcCCCCCCcccCC
Confidence 358999999999999999999999999999875 2369999999 568999999999999999999888887 99
Q ss_pred ccceEeeeecCccEEEEecCccCCCeEEEEecCCcHHHHHHHHHcCCC
Q psy4854 371 FMTSRPCTIAGIPCTLTRAGYTGEDGVEISVPGEQCTHIVEALLSDED 418 (555)
Q Consensus 371 ~~~~~~~~i~g~~v~i~R~~~~ge~G~eL~~~~~~a~~l~~~L~~ag~ 418 (555)
+++++.+.+++.+++++| +||+||||++|.+++.+||+.|+++|+
T Consensus 107 ~~~~~~~~i~~~~v~i~R---tGE~GfEi~v~~s~a~~lw~~L~~ag~ 151 (152)
T TIGR01375 107 VGAGRRTIFGKIAAVIWR---TGEDTFEIIVRRSFAESLWHWLVDASE 151 (152)
T ss_pred CCcEEEEEEcCeEEEEEE---cCCCeEEEEEEhhHHHHHHHHHHHHhc
Confidence 999999999999999999 699999999999999999999998763
No 22
>PRK00389 gcvT glycine cleavage system aminomethyltransferase T; Reviewed
Probab=99.73 E-value=2.7e-17 Score=172.98 Aligned_cols=109 Identities=34% Similarity=0.509 Sum_probs=99.1
Q ss_pred cccceeeeeccccCCCCCCCcHHHHHHHHHcCCCeEEEEEEeCCC-CCCCCCEEEcCCCcEEEEEeeccccCCCCCeeEE
Q psy4854 3 IYSRLLIFPGKRRRETGGFPGASIIQSQIKSGVSRKRTGFTSTGV-PIRPGYEIFNANDQRVGAITSGCPSPSLKKNIAM 81 (555)
Q Consensus 3 ~~~~l~w~v~~~~~~k~~fiG~~al~~~~~~g~~~~lvgl~~~~~-~~~~g~~v~~~~g~~vG~vTS~~~SP~l~~~I~~ 81 (555)
+.++|+|+|+++ +|+||+|||++++++..|++|++|+|.+++. .+.+|++|. .+|+.||+|||++|||.++++|||
T Consensus 248 ~e~gl~~~v~~~--~Kgcy~GqE~var~~~~g~krrlv~l~~~~~~~~~~g~~v~-~~g~~vG~vts~~~s~~~~~~ial 324 (359)
T PRK00389 248 LEAGLGWTVKLE--EKRDFIGREALEAQKEAGVERKLVGLELEERGIPRHGYPVL-ADGEEIGEVTSGTFSPTLGKSIAL 324 (359)
T ss_pred HHcCcccEecCC--CCCCCcCHHHHHHHHhcCCCeEEEEEEECCCcCCCCCCEEe-eCCcEEEEEeccCcccccCceEEE
Confidence 358999999996 3789999999999999899999999999753 457899996 689999999999999999999999
Q ss_pred EEecCCccCCCCEEEEEECCeEEeEEEEeCCCccCc
Q psy4854 82 GYIEPAYSKVGVELWVRVRDKRVDVKVTKMPFVKSN 117 (555)
Q Consensus 82 a~v~~~~~~~g~~~~v~~~~~~~~a~v~~~Pf~~~~ 117 (555)
|||++++ |+.++|++.|++++|+|+.+||++++
T Consensus 325 a~l~~~~---g~~~~v~~~~~~~~a~v~~~p~~~~~ 357 (359)
T PRK00389 325 AYVPAGV---GDEVEVEIRGKQVPAKVVKPPFVRRG 357 (359)
T ss_pred EEecCCC---CCEEEEEECCeEEEEEEecCCCcCCC
Confidence 9999975 99999999999999999999999864
No 23
>TIGR01372 soxA sarcosine oxidase, alpha subunit family, heterotetrameric form. This model describes the alpha subunit of a family of known and putative heterotetrameric sarcosine oxidases. Five operons of such oxidases are found in Mesorhizobium loti and three in Agrobacterium tumefaciens, a high enough copy number to suggest that not all members are share the same function. The model is designated as subfamily rather than equivalog for this reason.Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms
Probab=99.71 E-value=3.9e-17 Score=191.70 Aligned_cols=115 Identities=16% Similarity=0.202 Sum_probs=101.5
Q ss_pred ccceeeeeccccCCCCCCCcHHHHHHHHH-cCCCeEEEEEEeCCC--CCCCCCEEEcCC-----CcEEEEEeeccccCCC
Q psy4854 4 YSRLLIFPGKRRRETGGFPGASIIQSQIK-SGVSRKRTGFTSTGV--PIRPGYEIFNAN-----DQRVGAITSGCPSPSL 75 (555)
Q Consensus 4 ~~~l~w~v~~~~~~k~~fiG~~al~~~~~-~g~~~~lvgl~~~~~--~~~~g~~v~~~~-----g~~vG~vTS~~~SP~l 75 (555)
-++|+|+|++ +|+|||||++|++++. .+++|++|||.+.+. ++++|++++..+ ++.||.|||++|||+|
T Consensus 861 E~gl~~~V~~---~Kg~fiGqeal~r~~~~~~~krrlvgl~~~~~~~~~~~g~~v~~~~~~~~~~~~vG~VTS~~~sp~l 937 (985)
T TIGR01372 861 DLGMGWMVSK---KKPDFVGRRMLAREDLVAEDRKQLVGLLPLDPQRRLPEGAHIVADDAEAIPMNMQGHVTSSYFSPAL 937 (985)
T ss_pred HCCCcccccC---CCCCcCCHHHHHhHHhcCCCceEEEEEEEeCCCCCCCCCCEEEECCCcccCCCcEEEEeeeccchhc
Confidence 4789999998 4579999999998876 567999999998764 568899997433 4799999999999999
Q ss_pred CCeeEEEEecCCccCCCCEEEEEECCeEEeEEEEeCCCccCccccC
Q psy4854 76 KKNIAMGYIEPAYSKVGVELWVRVRDKRVDVKVTKMPFVKSNYYTP 121 (555)
Q Consensus 76 ~~~I~~a~v~~~~~~~g~~~~v~~~~~~~~a~v~~~Pf~~~~~~~~ 121 (555)
+++||||||+.+++++|++|+|+++|+.++|+|++.|||+|.-.|.
T Consensus 938 g~~iaLa~v~~~~~~~G~~v~v~~~g~~~~a~v~~~pf~dp~~~r~ 983 (985)
T TIGR01372 938 GRTIALALVKGGRARHGETVYVPDLGRFIAVEICDPVFFDPEGTRL 983 (985)
T ss_pred CCeEEEEEECccccCCCCEEEEEECCEEEEEEEeccCCCCCCCCCc
Confidence 9999999999999999999999999999999999999999865543
No 24
>KOG2929|consensus
Probab=99.66 E-value=9.6e-16 Score=150.39 Aligned_cols=205 Identities=14% Similarity=0.050 Sum_probs=130.8
Q ss_pred EEEecCCceEEEEEcccHHHHHhhccccCCCC--------CCCCceEEeeeecCCcceEEEEEEEEecCC----eEEEEe
Q psy4854 241 SVFDVSHMLQTVVTGKHREEWLESICVADVHE--------LDPGKGTLSLFTNEQGGIQDDLIVTKTLED----SLFLVS 308 (555)
Q Consensus 241 ~l~DlS~~~~i~v~G~da~~fLq~l~t~dv~~--------l~~G~~~yt~~ln~~G~i~~d~~v~r~~~d----~~~l~~ 308 (555)
.++-++++..|+|+|+|+++|||+|+||||.. .......|+++||.||+++-|.++++...+ +++|-+
T Consensus 31 ~~~~L~~RsliRv~GpDtvkFLqGL~TNdv~~~~p~~~~a~~t~~~~Ya~fLN~qGR~LyD~iLY~~~~~~~~~~~llE~ 110 (348)
T KOG2929|consen 31 NLSLLESRSLIRVRGPDTVKFLQGLLTNDVTRHFPGIQGAPITRNGLYAAFLNTQGRLLYDTILYPTPVPVSEPELLLEC 110 (348)
T ss_pred eeeecCCceEEEEeCccHHHHHhhhhcccccccCcccccCCCCCchhhhhhhccCccEEEEEEEecCCCCCCCCceEEEe
Confidence 37889999999999999999999999999986 223468899999999999999999998766 899999
Q ss_pred cccchHHHHHHHHHHHhhhccCCCCEEEEEccCCCeEEEEEc-CCCHHHHHhhccccCCCCCcccceEeeeecCccEEEE
Q psy4854 309 NASRRKVDMDLMVAAQDRFKSLGKDIHLQFLSAEERGLIAVQ-GPLSSTILQRHTDLDLSSLYFMTSRPCTIAGIPCTLT 387 (555)
Q Consensus 309 ~~~~~~~~~~~l~~~~~~~~~~~~~V~i~dvs~~~~~~i~v~-GP~A~~vL~~l~~~dl~~l~~~~~~~~~i~g~~v~i~ 387 (555)
..+....+..+|.+|-. +.+|+|+.++ ++...+.+. =|.... |...++...+ . +...
T Consensus 111 d~~~~~~~~khl~~yrL-----r~kv~v~~id-~el~tw~v~~~p~~~~--------d~~~~~~~~~--~------~~~~ 168 (348)
T KOG2929|consen 111 DGSVVGDFLKHLQKYRL-----RRKVEVEKID-HELKTWKVEVLPKNSI--------DANVFEENVL--N------VLYN 168 (348)
T ss_pred cCccchHHHHHHHHhhh-----hhcceeeeCc-hhhceeeeeecccccc--------chhhcchhhh--h------hhhc
Confidence 99888888999998865 3678888876 333222221 121100 0000000000 0 1111
Q ss_pred ecCccCCCeEEEEecCCcHHHHHHHHHcCCCeeecCchhhHhhh---------ccCCCC--CCcccccccc--ccccccc
Q psy4854 388 RAGYTGEDGVEISVPGEQCTHIVEALLSDEDVKLAGLGARDSLS---------GDITLN--TPVPHGSLKL--SNDRFKS 454 (555)
Q Consensus 388 R~~~~ge~G~eL~~~~~~a~~l~~~L~~ag~~~~~G~~a~~~lR---------~dl~~~--~P~E~gl~~~--v~~~K~~ 454 (555)
|..-.-..||++.. ...+.. +.+. .......-+..+| +|+.+. .|+|+|++|+ |+|+|||
T Consensus 169 rdpr~s~~~~~~l~-~~f~~~----~~~~--~~~~d~~~Y~~~Ry~~Gv~EG~~el~pg~~lPLE~N~d~lngISf~KGC 241 (348)
T KOG2929|consen 169 RDPRFSGMGWRLLP-QDFAVP----TSEQ--VSEGDESDYRLLRYQQGVAEGSQELIPGTLLPLESNFDFLNGISFDKGC 241 (348)
T ss_pred cCCccccccccccc-eeecCc----cccc--ccccchhHHHHHHHHcCcccchhhcCcccccceeccccccccccccCcc
Confidence 11101111222210 000000 0000 0000111133344 678876 9999999987 9999999
Q ss_pred -CCceeEEecc-C----CcEEEEEEe
Q psy4854 455 -LGKDIHLQFL-S----PEERGLIAV 474 (555)
Q Consensus 455 -iG~eal~~~~-~----~~lv~l~~~ 474 (555)
+|||-.+|.. + +|++-+.++
T Consensus 242 YVGQELTARThhtGViRKRl~P~r~~ 267 (348)
T KOG2929|consen 242 YVGQELTARTHHTGVIRKRLFPFRLD 267 (348)
T ss_pred eechhheehhhhcceeeeeeeeEEec
Confidence 9999999886 3 888888883
No 25
>PF01571 GCV_T: Aminomethyltransferase folate-binding domain; InterPro: IPR006222 This is a family of glycine cleavage T-proteins, part of the glycine cleavage multienzyme complex (GCV) found in bacteria and the mitochondria of eukaryotes. GCV catalyses the catabolism of glycine in eukaryotes. The T-protein is an aminomethyl transferase 2.1.2.10 from EC that catalyses the following reaction: (6S)-tetrahydrofolate + S-aminomethyldihydrolipoylprotein = (6R)-5,10-methylenetetrahydrofolate + NH3 + dihydrolipoylprotein ; GO: 0004047 aminomethyltransferase activity, 0006546 glycine catabolic process, 0005737 cytoplasm; PDB: 3TFJ_B 3TFI_B 3TFH_A 1YX2_B 3GIR_A 3A8K_D 3A8I_B 3A8J_C 1VLO_A 1WOO_A ....
Probab=99.38 E-value=6.5e-13 Score=129.12 Aligned_cols=175 Identities=33% Similarity=0.405 Sum_probs=133.0
Q ss_pred EEEccCCCeEEEEEcCCCHHHHHhhccccCCCCCcccceEeeeecCc------cEEEEecCccCCCeEEEEecCCcHHHH
Q psy4854 336 LQFLSAEERGLIAVQGPLSSTILQRHTDLDLSSLYFMTSRPCTIAGI------PCTLTRAGYTGEDGVEISVPGEQCTHI 409 (555)
Q Consensus 336 i~dvs~~~~~~i~v~GP~A~~vL~~l~~~dl~~l~~~~~~~~~i~g~------~v~i~R~~~~ge~G~eL~~~~~~a~~l 409 (555)
|.|+| ++++|.|.||+|.++|+.++++|++.++.+++.+..+.+. ++.+.| .++..|.+.++...+..+
T Consensus 1 l~d~s--~~~~i~v~G~Da~~fLq~~~t~di~~l~~g~~~~~~~l~~~G~v~~d~~v~~---~~~~~~~l~~~~~~~~~~ 75 (211)
T PF01571_consen 1 LFDLS--HRGVIRVSGPDAAKFLQGLLTNDISKLPPGQARYTLFLNPKGRVLDDFFVYR---LGDDEFLLIVPASAADAL 75 (211)
T ss_dssp EEE-T--TSEEEEEESTTHHHHHHHHBSS-GTTS-TTBEEEEEEE-TTS-EEEEEEEEE---EETTEEEEEECCTCHHHH
T ss_pred CCCCC--CcEEEEEECCCHHHHHHHhhhhhHHhhCCCceeEEEEECCCCcEEEEEEEEe---ecCceEEEEecchhHHHH
Confidence 56888 8999999999999999999999999998888877766442 478888 567779999999999988
Q ss_pred HHHHHcCCCeeecCchhhHhhhccCCCCCCcccccccccccccccCCceeEEeccCCcEEEEEEeecCccceEeeccccc
Q psy4854 410 VEALLSDEDVKLAGLGARDSLSGDITLNTPVPHGSLKLSNDRFKSLGKDIHLQFLSPEERGLIAVQGPLSSTILQRHTDL 489 (555)
Q Consensus 410 ~~~L~~ag~~~~~G~~a~~~lR~dl~~~~P~E~gl~~~v~~~K~~iG~eal~~~~~~~lv~l~~~~gp~a~~v~~~~~~~ 489 (555)
++.|...- . ..++.+...+..+..+.+ +||.+.+++.+..+.
T Consensus 76 ~~~L~~~~------------------------------~-------~~~v~i~~~~~~~~~~~l-~Gp~a~~~l~~~~~~ 117 (211)
T PF01571_consen 76 LEWLKKYI------------------------------L-------RSDVEIEDVSDDLAVLGL-QGPKAAEVLQKLFDE 117 (211)
T ss_dssp HHHHHHHH------------------------------H-------HSS-EEEEETTTEEEEEE-ESTTHHHHHHHHSSS
T ss_pred HHHHHHhc------------------------------c-------ccCcEEEEcccceeEEEE-EcchhhHHHHHhccc
Confidence 88775320 0 012333333233556656 999987777655433
Q ss_pred ceeeEEEEeeeeecccCeeEEEEeccccCCceEEEEeCCcchHHHHHhccc---CCCCcccccccccCC
Q psy4854 490 DLSSLYFMTSRPCTIAGIPCTLTRAGYTGEDGVEISVPGEQCTHIVEALLS---DEDVKLAGLGARDSL 555 (555)
Q Consensus 490 ~~t~~~~~~~~~~~~~~i~~~~~r~~y~ge~g~EI~i~~~~~~~v~~~l~~---~~g~~~~G~~A~~sl 555 (555)
+...++++....+ +.+ ++.+.|.+++|+.||||+++.+.+.++|+.|++ ++|++++|..|+++|
T Consensus 118 ~~~~~~~~~~~~~-~~~-~~~~~r~~~~g~~g~~l~~~~~~~~~~~~~l~~~g~~~g~~~~g~~~~~~l 184 (211)
T PF01571_consen 118 DIEPLPFFSSREV-GDG-PVLVARTGRTGELGYELIVPAEEAEALWDALLEAGKDFGVRPAGLEAWEAL 184 (211)
T ss_dssp SGTTSHTTBEEEE-ETT-EEEEESCBSSSSSEEEEEEEGGGHHHHHHHHHHHHGGGTEEEEEHHHHHHH
T ss_pred ccccccccceeee-cCc-eEEEEecccCCCCCEEEEeccchhHHHHHHHHHHHhccCceeccHHHHHHH
Confidence 4455666666666 777 999999999999999999999999999999998 689999999988753
No 26
>PF04268 SoxG: Sarcosine oxidase, gamma subunit family ; InterPro: IPR007375 Sarcosine oxidase is a hetero-tetrameric enzyme that contains both covalently bound FMN and non-covalently bound FAD and NAD+. This enzyme catalyzes the oxidative demethylation of sarcosine to yield glycine, H2O2, and 5,10-CH2-tetrahydrofolate (H4folate) in a reaction requiring H4folate and O2 [, ].; PDB: 2GAH_C 3ADA_C 1VRQ_C 3AD8_C 3AD9_C 3AD7_C 1X31_C.
Probab=99.16 E-value=2.6e-10 Score=104.23 Aligned_cols=133 Identities=19% Similarity=0.155 Sum_probs=95.7
Q ss_pred HHHHhhccccCCCCCCCCceEEeeeecCCcceEEEEEEEEecCCeEEEEecccchHHHHHHHHHHHhhhccCCCCEEEEE
Q psy4854 259 EEWLESICVADVHELDPGKGTLSLFTNEQGGIQDDLIVTKTLEDSLFLVSNASRRKVDMDLMVAAQDRFKSLGKDIHLQF 338 (555)
Q Consensus 259 ~~fLq~l~t~dv~~l~~G~~~yt~~ln~~G~i~~d~~v~r~~~d~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~V~i~d 338 (555)
..-++..+...++. +++... .++ .+.|+|+|+|+++.+. .......|.+.+. ....+.|
T Consensus 10 ~aa~~~a~G~~lP~-~~~~~~-----------~~~-~~~wlgPdewLl~~~~--~~~~~~~l~~~l~------~~a~v~d 68 (147)
T PF04268_consen 10 AAALAAALGVALPA-APNSVA-----------AGG-AVLWLGPDEWLLLSPD--GEDLAAALAAALG------GHASVVD 68 (147)
T ss_dssp HHHHHHHCSS-----STCEEE-----------E-T-EEEEEETTEEEEEESS---TCHHHHHHHHHT------TSSEEEE
T ss_pred HHHHHHHhCCCCCC-ccceec-----------cCC-eEEEEcCCEEEEEecC--cchHHHHHHHhhC------CCeEEEe
Confidence 45566667777774 555432 223 7999999999999832 2334566665542 2678999
Q ss_pred ccCCCeEEEEEcCCCHHHHHhhccccCCC--CCcccceEeeeecCccEEEEecCccCCCeEEEEecCCcHHHHHHHHHcC
Q psy4854 339 LSAEERGLIAVQGPLSSTILQRHTDLDLS--SLYFMTSRPCTIAGIPCTLTRAGYTGEDGVEISVPGEQCTHIVEALLSD 416 (555)
Q Consensus 339 vs~~~~~~i~v~GP~A~~vL~~l~~~dl~--~l~~~~~~~~~i~g~~v~i~R~~~~ge~G~eL~~~~~~a~~l~~~L~~a 416 (555)
+| ..+..|.|.||+++++|+++|..|+. .|+.+.+..+.+++.++++.| .++++|+|+++++++.++|+.|.++
T Consensus 69 ~S-d~~~~~~lsG~~a~~vLak~~~iDl~~~af~~G~~a~T~~~~i~v~l~r---~~~~~f~l~v~rSfA~~l~~~L~~A 144 (147)
T PF04268_consen 69 VS-DGRVWFRLSGPAARDVLAKGCPIDLHPSAFPPGRAARTSFAHISVILWR---DGEDGFRLLVRRSFAEYLWHWLEDA 144 (147)
T ss_dssp -T-TTB--EEEESTTHHHHHTTT--S--STTTS-TTEEEEEEETTEEEEEEE---EETTEEEEEEBGGGHHHHHHHHHHH
T ss_pred cC-CceEEEEEECHHHHHHHHhhCCCCCCcccCCCCcEEEEeecCeEEEEEE---cCCCEEEEEEECchHHHHHHHHHHH
Confidence 99 45799999999999999999999986 599999999999999999999 6899999999999999999999764
No 27
>COG4583 Sarcosine oxidase gamma subunit [Amino acid transport and metabolism]
Probab=99.02 E-value=2.8e-09 Score=98.62 Aligned_cols=114 Identities=21% Similarity=0.199 Sum_probs=93.4
Q ss_pred EEEEEEecCCeEEEEecccchHHHHHHHHHHHhhhccCCCCEEEEEccCCCeEEEEEcCCCHHHHHhhccccCCC--CCc
Q psy4854 293 DLIVTKTLEDSLFLVSNASRRKVDMDLMVAAQDRFKSLGKDIHLQFLSAEERGLIAVQGPLSSTILQRHTDLDLS--SLY 370 (555)
Q Consensus 293 d~~v~r~~~d~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~V~i~dvs~~~~~~i~v~GP~A~~vL~~l~~~dl~--~l~ 370 (555)
+..|.+++||+|+++.+.+.......-+.. . .......|+| ..+..|.|.||+|+++|++.|..|++ .||
T Consensus 69 e~~v~wlgPDeW~Vi~~~~~~~~~~aa~A~-~------~~~as~VDvS-hg~t~I~IsG~~Ae~~L~kg~~~DL~~~~Fp 140 (189)
T COG4583 69 ERSVLWLGPDEWLVISEGGEDAAMKAAFAS-L------EALASAVDVS-HGRTAIRISGPKAEAVLAKGCALDLSLEAFP 140 (189)
T ss_pred ceEEEEeCCCeeEEEcCCCccHHHHHHHhh-c------cccceeeecc-CCeEEEEecCHhHHHHHhcCCccccChhhCC
Confidence 356889999999999987655431121111 1 1234889999 45799999999999999999999985 699
Q ss_pred ccceEeeeecCccEEEEecCccCCCeEEEEecCCcHHHHHHHHHcCC
Q psy4854 371 FMTSRPCTIAGIPCTLTRAGYTGEDGVEISVPGEQCTHIVEALLSDE 417 (555)
Q Consensus 371 ~~~~~~~~i~g~~v~i~R~~~~ge~G~eL~~~~~~a~~l~~~L~~ag 417 (555)
.+.+..+.++.+.+.+.| +|++-|||+|-+.+++++|+.|.++.
T Consensus 141 vG~~a~T~~~~~~vvl~r---~g~d~fei~V~RSFAe~~w~~L~~as 184 (189)
T COG4583 141 VGAAARTIFGKAAVVLTR---TGADTFEIEVWRSFAESLWHLLLDAS 184 (189)
T ss_pred CccceeeeecceEEEEEe---ecCCeEEEEeehhhHHHHHHHHHHhh
Confidence 999999999999999999 89999999999999999999998753
No 28
>TIGR01375 soxG sarcosine oxidase, gamma subunit family, heterotetrameric form. Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms.
Probab=98.78 E-value=3.6e-08 Score=90.89 Aligned_cols=137 Identities=21% Similarity=0.196 Sum_probs=99.0
Q ss_pred HHHHhhccccCCCCCcccceEeeeecCccEEEEecCccCCCeEEEEecCCcHHHHHHHHHcCCCeeecCchhhHhhhccC
Q psy4854 355 STILQRHTDLDLSSLYFMTSRPCTIAGIPCTLTRAGYTGEDGVEISVPGEQCTHIVEALLSDEDVKLAGLGARDSLSGDI 434 (555)
Q Consensus 355 ~~vL~~l~~~dl~~l~~~~~~~~~i~g~~v~i~R~~~~ge~G~eL~~~~~~a~~l~~~L~~ag~~~~~G~~a~~~lR~dl 434 (555)
...+++.++.+++.-+-. ...+...++.| .|++.|.++.+......+++.|.++-
T Consensus 10 ~~~~~~~~g~~lP~~~~~-----~~~~~~~~v~r---lg~d~~llv~~~~~~~~~~~~l~~~~----------------- 64 (152)
T TIGR01375 10 VAALAAALGLTLPARLGS-----VASGGEISVLW---LGPDEWLIIAPQPEGAVLMAALAAAL----------------- 64 (152)
T ss_pred HHHHHHhhCCCCCCcccc-----cccCCCeEEEE---EcCCEEEEEcCccchHHHHHHHHHHh-----------------
Confidence 445666666555532211 11222378889 68899999998877777776665421
Q ss_pred CCCCCcccccccccccccccCCceeEEeccCCcEEEEEEeecCccceEeecccccceee--EEEEeeeeecccCeeEEEE
Q psy4854 435 TLNTPVPHGSLKLSNDRFKSLGKDIHLQFLSPEERGLIAVQGPLSSTILQRHTDLDLSS--LYFMTSRPCTIAGIPCTLT 512 (555)
Q Consensus 435 ~~~~P~E~gl~~~v~~~K~~iG~eal~~~~~~~lv~l~~~~gp~a~~v~~~~~~~~~t~--~~~~~~~~~~~~~i~~~~~ 512 (555)
.++.+.+.+.+..++.|.+ +||++++++++.+..+++. ++|+....+.++++++.+.
T Consensus 65 --------------------~~~~v~v~d~s~~~~~l~l-qGP~A~~vL~~l~~~dl~~~~~~~~~~~~~~i~~~~v~i~ 123 (152)
T TIGR01375 65 --------------------GPEPHAVVDLSGGRTALRI-SGPMAEEVLAKGCAVDLSLSAFPVGAGRRTIFGKIAAVIW 123 (152)
T ss_pred --------------------CCCccEEEEecCCEEEEEE-EChhHHHHHHhcCCCCCCcccCCCCcEEEEEEcCeEEEEE
Confidence 1112333333345677777 9999999998877667776 8888888888999999999
Q ss_pred eccccCCceEEEEeCCcchHHHHHhccc
Q psy4854 513 RAGYTGEDGVEISVPGEQCTHIVEALLS 540 (555)
Q Consensus 513 r~~y~ge~g~EI~i~~~~~~~v~~~l~~ 540 (555)
|+ ||+||||+++.+.+..+|+.|++
T Consensus 124 Rt---GE~GfEi~v~~s~a~~lw~~L~~ 148 (152)
T TIGR01375 124 RT---GEDTFEIIVRRSFAESLWHWLVD 148 (152)
T ss_pred Ec---CCCeEEEEEEhhHHHHHHHHHHH
Confidence 95 89999999999999999999986
No 29
>PRK09559 putative global regulator; Reviewed
Probab=98.71 E-value=8.3e-08 Score=99.72 Aligned_cols=105 Identities=11% Similarity=0.111 Sum_probs=79.2
Q ss_pred cccee--eeeccccCCCCCCCcHHHHHHHHHcCC-CeEEEEEEeCCC-CCCCCCEE--EcC-CCcEEEEEeeccccCCCC
Q psy4854 4 YSRLL--IFPGKRRRETGGFPGASIIQSQIKSGV-SRKRTGFTSTGV-PIRPGYEI--FNA-NDQRVGAITSGCPSPSLK 76 (555)
Q Consensus 4 ~~~l~--w~v~~~~~~k~~fiG~~al~~~~~~g~-~~~lvgl~~~~~-~~~~g~~v--~~~-~g~~vG~vTS~~~SP~l~ 76 (555)
.++|+ |.|++ +|+||+|+|++.+++..|. +|+++|+.+++. ++++|++| ++. +++.||.|||.+-+|. +
T Consensus 213 e~nL~~l~~Vsf---~KGCY~GQE~vAR~~~~G~~krrl~~l~~~~~~~~~~g~~i~~~~~~~~~~~G~v~s~~~~~~-~ 288 (327)
T PRK09559 213 ATNLQALGGISF---KKGCYTGQEMVARAKFRGANKRALWWLAGKASRVPEAGEDLELKMGENWRRTGTVLAAVQLDD-G 288 (327)
T ss_pred hhChhhcCceee---cCcccccHHHHHHHHHcCCCceeEEEEecccccCCCCCCeeEEecCCCCceeEEEEEEEECCC-C
Confidence 36788 58999 5699999999999988776 788899999864 56899966 333 3689999999999887 5
Q ss_pred CeeEEEEecCCccCCCCEEEEEECCeEEeEEEEeCCCc
Q psy4854 77 KNIAMGYIEPAYSKVGVELWVRVRDKRVDVKVTKMPFV 114 (555)
Q Consensus 77 ~~I~~a~v~~~~~~~g~~~~v~~~~~~~~a~v~~~Pf~ 114 (555)
...+++.++.+. ..++.+.+.-..+ -..++..+|+-
T Consensus 289 ~~~~l~v~~~~~-~~~~~l~~~~~~~-~~~~~~~lPy~ 324 (327)
T PRK09559 289 QVWVQVVMNNDL-EADSVFRVRDDAG-NTLHIQPLPYS 324 (327)
T ss_pred CEEEEEEEecCc-CCCceEEEccCCC-CeeEecCCCCC
Confidence 555667777664 5677777753322 34788888874
No 30
>TIGR03317 ygfZ_signature folate-binding protein YgfZ. YgfZ is a protein from Escherichia coli, homologous to the glycine cleavage system T protein, or aminomethyltransferase, GcvT (TIGR00528). Homologs of YgfZ other than members of the GcvT family share a well-conserved signature region that includes the motif, KGCYxGQE. Elsewhere, sequence diverge and length variation are substantial. Members of this family are mostly bacterial, largely absent from the Firmicutes and otherwise usually present. A few eukaryotic examples are found among the Apicomplexa, and a few archaeal sequences are found. Two functions implicated for this folate-binding protein are RNA modification (a function likely to be conserved) and replication initiation (a function likely to be highly variable). Many members of this family are, at the time of construction of this model, misnamed as the glycine cleavage system T protein.
Probab=98.34 E-value=9.4e-08 Score=75.35 Aligned_cols=41 Identities=7% Similarity=-0.035 Sum_probs=35.1
Q ss_pred ccCCCC-CCccccccc--cccccccc-CCceeEEecc-----CCcEEEEE
Q psy4854 432 GDITLN-TPVPHGSLK--LSNDRFKS-LGKDIHLQFL-----SPEERGLI 472 (555)
Q Consensus 432 ~dl~~~-~P~E~gl~~--~v~~~K~~-iG~eal~~~~-----~~~lv~l~ 472 (555)
+|++++ +|+|+||+| +|+|+|+| +|||++++++ .++++++.
T Consensus 17 ~el~~~~~P~E~gl~~~~~v~~~Kg~yiGqe~l~r~~~~g~~~~~lv~l~ 66 (67)
T TIGR03317 17 AETSGEFLPQELNLDALGGVSFKKGCYVGQEVVARMHYRGKVKRRLVRLR 66 (67)
T ss_pred cccCCCCCHhHcCCCccCcEeCCCCCccCHHHHHHHHHcCCCceeEEEee
Confidence 799998 999999999 99999998 9999998765 15666653
No 31
>TIGR03317 ygfZ_signature folate-binding protein YgfZ. YgfZ is a protein from Escherichia coli, homologous to the glycine cleavage system T protein, or aminomethyltransferase, GcvT (TIGR00528). Homologs of YgfZ other than members of the GcvT family share a well-conserved signature region that includes the motif, KGCYxGQE. Elsewhere, sequence diverge and length variation are substantial. Members of this family are mostly bacterial, largely absent from the Firmicutes and otherwise usually present. A few eukaryotic examples are found among the Apicomplexa, and a few archaeal sequences are found. Two functions implicated for this folate-binding protein are RNA modification (a function likely to be conserved) and replication initiation (a function likely to be highly variable). Many members of this family are, at the time of construction of this model, misnamed as the glycine cleavage system T protein.
Probab=97.86 E-value=1.7e-05 Score=62.50 Aligned_cols=37 Identities=16% Similarity=0.155 Sum_probs=33.2
Q ss_pred ccceee--eeccccCCCCCCCcHHHHHHHHHcC-CCeEEEEEE
Q psy4854 4 YSRLLI--FPGKRRRETGGFPGASIIQSQIKSG-VSRKRTGFT 43 (555)
Q Consensus 4 ~~~l~w--~v~~~~~~k~~fiG~~al~~~~~~g-~~~~lvgl~ 43 (555)
.++|+| .|++ +|+||+|||++.+++..| +++++|+|.
T Consensus 27 E~gl~~~~~v~~---~Kg~yiGqe~l~r~~~~g~~~~~lv~l~ 66 (67)
T TIGR03317 27 ELNLDALGGVSF---KKGCYVGQEVVARMHYRGKVKRRLVRLR 66 (67)
T ss_pred HcCCCccCcEeC---CCCCccCHHHHHHHHHcCCCceeEEEee
Confidence 579999 9988 568999999999999988 799999986
No 32
>COG0354 Predicted aminomethyltransferase related to GcvT [General function prediction only]
Probab=97.42 E-value=0.00018 Score=73.63 Aligned_cols=98 Identities=15% Similarity=0.143 Sum_probs=72.8
Q ss_pred eeccccCCCCCCCcHHHHHHHHHcC-CCeEEEEEEeCCCCCCCCCEEEcCCCcE--EEEEeeccccCCCCCeeEEEEecC
Q psy4854 10 FPGKRRRETGGFPGASIIQSQIKSG-VSRKRTGFTSTGVPIRPGYEIFNANDQR--VGAITSGCPSPSLKKNIAMGYIEP 86 (555)
Q Consensus 10 ~v~~~~~~k~~fiG~~al~~~~~~g-~~~~lvgl~~~~~~~~~g~~v~~~~g~~--vG~vTS~~~SP~l~~~I~~a~v~~ 86 (555)
.|++ +||||+|+|.+.+.+..| .+|+++-|.+++..+..|+.|. .++++ +|.|+|..--+ ++|+++++.
T Consensus 201 gISF---~KGCYvGQE~VAR~~~rG~~kRrl~~l~~d~~~p~~g~~i~-a~~~~~~~G~v~s~~~~~----~~~l~~l~~ 272 (305)
T COG0354 201 GISF---KKGCYVGQETVARAKYRGTNKRRLVLLALDASLPEAGEEIL-AGGEEVGLGTVLSAVGLG----PVALIRLKV 272 (305)
T ss_pred cEec---cCcccccHHHhhHHHhcCCCceeEEEEEeCCCCCCCCCeee-cCCCcceeeeEEecccCc----chhHHHHHH
Confidence 4677 579999999999998876 5778888888886578999998 67888 99999975433 489999999
Q ss_pred CccCCCCEEEEEECCeEEeEEEEeCCCccCcccc
Q psy4854 87 AYSKVGVELWVRVRDKRVDVKVTKMPFVKSNYYT 120 (555)
Q Consensus 87 ~~~~~g~~~~v~~~~~~~~a~v~~~Pf~~~~~~~ 120 (555)
....|..+.+.. ..+.+.-.|+....+..
T Consensus 273 -~l~~~~~~~v~~----~~~~~~~~~~~~~~~~~ 301 (305)
T COG0354 273 -VLDNGLAIDVGG----RIANLALPPWVRLPFPY 301 (305)
T ss_pred -hhcccchhhhcc----cccccccccccccccCC
Confidence 666677665432 34555556666554433
No 33
>PF04268 SoxG: Sarcosine oxidase, gamma subunit family ; InterPro: IPR007375 Sarcosine oxidase is a hetero-tetrameric enzyme that contains both covalently bound FMN and non-covalently bound FAD and NAD+. This enzyme catalyzes the oxidative demethylation of sarcosine to yield glycine, H2O2, and 5,10-CH2-tetrahydrofolate (H4folate) in a reaction requiring H4folate and O2 [, ].; PDB: 2GAH_C 3ADA_C 1VRQ_C 3AD8_C 3AD9_C 3AD7_C 1X31_C.
Probab=97.34 E-value=0.0018 Score=59.20 Aligned_cols=84 Identities=24% Similarity=0.297 Sum_probs=64.6
Q ss_pred HHhcCcEEEecCC-ceEEEEEcccHHHHHhhccccCCC--CCCCCceEEeeeecCCcceEEEEEEEEecCCeEEEEeccc
Q psy4854 235 HTRSKVSVFDVSH-MLQTVVTGKHREEWLESICVADVH--ELDPGKGTLSLFTNEQGGIQDDLIVTKTLEDSLFLVSNAS 311 (555)
Q Consensus 235 a~r~~v~l~DlS~-~~~i~v~G~da~~fLq~l~t~dv~--~l~~G~~~yt~~ln~~G~i~~d~~v~r~~~d~~~l~~~~~ 311 (555)
++-....+.|.|+ +..|.|+|+.+.+.|.+.|.-|+. .+++|++..|.+ +++ .++|.|.+++.|.|++..+
T Consensus 59 ~l~~~a~v~d~Sd~~~~~~lsG~~a~~vLak~~~iDl~~~af~~G~~a~T~~----~~i--~v~l~r~~~~~f~l~v~rS 132 (147)
T PF04268_consen 59 ALGGHASVVDVSDGRVWFRLSGPAARDVLAKGCPIDLHPSAFPPGRAARTSF----AHI--SVILWRDGEDGFRLLVRRS 132 (147)
T ss_dssp HHTTSSEEEE-TTTB--EEEESTTHHHHHTTT--S--STTTS-TTEEEEEEE----TTE--EEEEEEEETTEEEEEEBGG
T ss_pred hhCCCeEEEecCCceEEEEEECHHHHHHHHhhCCCCCCcccCCCCcEEEEee----cCe--EEEEEEcCCCEEEEEEECc
Confidence 3444789999995 779999999999999999999996 689999999988 343 3667799999999999999
Q ss_pred chHHHHHHHHHHH
Q psy4854 312 RRKVDMDLMVAAQ 324 (555)
Q Consensus 312 ~~~~~~~~l~~~~ 324 (555)
.++.++.||....
T Consensus 133 fA~~l~~~L~~Aa 145 (147)
T PF04268_consen 133 FAEYLWHWLEDAA 145 (147)
T ss_dssp GHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHh
Confidence 9999999997643
No 34
>COG4583 Sarcosine oxidase gamma subunit [Amino acid transport and metabolism]
Probab=96.81 E-value=0.0056 Score=57.25 Aligned_cols=83 Identities=23% Similarity=0.304 Sum_probs=70.3
Q ss_pred HhcCcEEEecCC-ceEEEEEcccHHHHHhhccccCC--CCCCCCceEEeeeecCCcceEEEEEEEEecCCeEEEEecccc
Q psy4854 236 TRSKVSVFDVSH-MLQTVVTGKHREEWLESICVADV--HELDPGKGTLSLFTNEQGGIQDDLIVTKTLEDSLFLVSNASR 312 (555)
Q Consensus 236 ~r~~v~l~DlS~-~~~i~v~G~da~~fLq~l~t~dv--~~l~~G~~~yt~~ln~~G~i~~d~~v~r~~~d~~~l~~~~~~ 312 (555)
.-....+.|+|| ...|+|+|+.|...|+.-|..|+ +.+++|++.-|.+ |+ ..+.+.|.++|.|-|++-.+-
T Consensus 99 ~~~~as~VDvShg~t~I~IsG~~Ae~~L~kg~~~DL~~~~FpvG~~a~T~~----~~--~~vvl~r~g~d~fei~V~RSF 172 (189)
T COG4583 99 LEALASAVDVSHGRTAIRISGPKAEAVLAKGCALDLSLEAFPVGAAARTIF----GK--AAVVLTRTGADTFEIEVWRSF 172 (189)
T ss_pred ccccceeeeccCCeEEEEecCHhHHHHHhcCCccccChhhCCCccceeeee----cc--eEEEEEeecCCeEEEEeehhh
Confidence 334458999997 67899999999999999999999 5789999988887 44 347789999999999998888
Q ss_pred hHHHHHHHHHHH
Q psy4854 313 RKVDMDLMVAAQ 324 (555)
Q Consensus 313 ~~~~~~~l~~~~ 324 (555)
++.++.+|.+..
T Consensus 173 Ae~~w~~L~~as 184 (189)
T COG4583 173 AESLWHLLLDAS 184 (189)
T ss_pred HHHHHHHHHHhh
Confidence 888888887654
No 35
>PF08669 GCV_T_C: Glycine cleavage T-protein C-terminal barrel domain; InterPro: IPR013977 This entry shows glycine cleavage T-proteins, part of the glycine cleavage multienzyme complex (GCV) found in bacteria and the mitochondria of eukaryotes. GCV catalyses the catabolism of glycine in eukaryotes. The T-protein is an aminomethyl transferase. ; PDB: 3ADA_A 1VRQ_A 1X31_A 3AD9_A 3AD8_A 3AD7_A 3GIR_A 1WOO_A 1WOS_A 1WOR_A ....
Probab=96.23 E-value=0.0057 Score=51.42 Aligned_cols=76 Identities=13% Similarity=0.184 Sum_probs=52.1
Q ss_pred cCCceeEEecc----C-CcEEEEEEeec--Ccc--ceEee-cccccceeeEEEEeeeeecccCeeEEEEeccccC-CceE
Q psy4854 454 SLGKDIHLQFL----S-PEERGLIAVQG--PLS--STILQ-RHTDLDLSSLYFMTSRPCTIAGIPCTLTRAGYTG-EDGV 522 (555)
Q Consensus 454 ~iG~eal~~~~----~-~~lv~l~~~~g--p~a--~~v~~-~~~~~~~t~~~~~~~~~~~~~~i~~~~~r~~y~g-e~g~ 522 (555)
|+|||++++++ . +++++|.++ + +.. .+|+. ++. .++.+++...++..-..|.+++++..+.. +..+
T Consensus 3 fiG~eal~r~~~~g~~rr~lv~l~~~-~~~~~~~g~~v~~~~g~--~vG~vTS~~~sp~~~~~Iala~v~~~~~~~g~~l 79 (95)
T PF08669_consen 3 FIGQEALARQKARGVKRRRLVGLTLD-GDAPPRGGEPVYDEDGK--PVGRVTSGAYSPTLGKNIALAYVDREYAEPGTEL 79 (95)
T ss_dssp STTHHHHHHHHHHTTS-EEEEEEEES-SSS--STTCEEEETTTE--EEEEEEEEEEETTTTEEEEEEEEEGGGGSTTSEE
T ss_pred cCCHHHHHHHHhcCCCceEEEEEEEC-CccCCCCCCEEEECCCc--EEeEEEEEeECCCCCceEEEEEECHHHcCCCCEE
Confidence 39999999887 2 799999884 4 222 88988 443 33334444445566667888999888863 5578
Q ss_pred EEEeCCcchH
Q psy4854 523 EISVPGEQCT 532 (555)
Q Consensus 523 EI~i~~~~~~ 532 (555)
+|.+.++...
T Consensus 80 ~v~~~g~~~~ 89 (95)
T PF08669_consen 80 EVEIRGKRVP 89 (95)
T ss_dssp EEEETTEEEE
T ss_pred EEEECCEEEE
Confidence 8888877554
No 36
>PF10396 TrmE_N: GTP-binding protein TrmE N-terminus; InterPro: IPR018948 This family represents the shorter, B, chain of the homo-dimeric structure which is a guanine nucleotide-binding protein that binds and hydrolyses GTP. TrmE is homologous to the tetrahydrofolate-binding domain of N,N-dimethylglycine oxidase and indeed binds formyl-tetrahydrofolate. TrmE actively participates in the formylation reaction of uridine and regulates the ensuing hydrogenation reaction of a Schiff's base intermediate. This B chain is the N-terminal portion of the protein consisting of five beta-strands and three alpha helices and is necessary for mediating dimer formation within the protein []. ; PDB: 1XZQ_B 1XZP_A 3GEE_A 3GEI_B 3GEH_A.
Probab=95.04 E-value=0.23 Score=43.19 Aligned_cols=62 Identities=16% Similarity=0.180 Sum_probs=49.1
Q ss_pred CCceEEEEEcccHHHHHhhccccCCCCCCCCceEEeeeecCCcceEEEEEEEEe-------cCCeEEEEecc
Q psy4854 246 SHMLQTVVTGKHREEWLESICVADVHELDPGKGTLSLFTNEQGGIQDDLIVTKT-------LEDSLFLVSNA 310 (555)
Q Consensus 246 S~~~~i~v~G~da~~fLq~l~t~dv~~l~~G~~~yt~~ln~~G~i~~d~~v~r~-------~~d~~~l~~~~ 310 (555)
+..+.|+|+|+++.+.++.++ .+.+++..+.|..+.+.+|.++|+..+... +||..=+-+-+
T Consensus 12 ~aiaiIRiSG~~a~~i~~~~~---~~~~~~r~~~~~~~~~~~~~~iDe~lv~~f~~P~SyTGEd~vEi~~HG 80 (114)
T PF10396_consen 12 SAIAIIRISGPDALEIAQKLF---GKSPKPRRAYYGTIYDEDGEPIDEVLVLYFPAPRSYTGEDVVEIHCHG 80 (114)
T ss_dssp -SEEEEEEESTTHHHHHHTTE---SSSTTTTEEEEEEEECSSTCEEEEEEEEEEBTTCSSSSSEEEEEEEES
T ss_pred ceEEEEEeEcHHHHHHHHHHh---CccccCcEEEEEEEEcCCCccccceeEEeecCCCcccCCCEEEEEcCC
Confidence 456789999999999999999 333468999999999999999999888765 46655554443
No 37
>KOG2929|consensus
Probab=94.52 E-value=0.054 Score=54.54 Aligned_cols=96 Identities=16% Similarity=0.210 Sum_probs=64.4
Q ss_pred eeccccCCCCCCCcHHHHHHHHHcCCC-eEEEEEEeC---CCCC-----CCCCEEEcCCCcEEEEEeeccccCCCCCeeE
Q psy4854 10 FPGKRRRETGGFPGASIIQSQIKSGVS-RKRTGFTST---GVPI-----RPGYEIFNANDQRVGAITSGCPSPSLKKNIA 80 (555)
Q Consensus 10 ~v~~~~~~k~~fiG~~al~~~~~~g~~-~~lvgl~~~---~~~~-----~~g~~v~~~~g~~vG~vTS~~~SP~l~~~I~ 80 (555)
+|++ +|+||+|+|-..+--..|+- ||++-|++. +.+. .....|....|+++|.|.|+ +..-|
T Consensus 234 gISf---~KGCYVGQELTARThhtGViRKRl~P~r~~~~e~~p~~~~~~~~~~~v~~~~g~kvG~~~~~------~g~~g 304 (348)
T KOG2929|consen 234 GISF---DKGCYVGQELTARTHHTGVIRKRLFPFRLDLAENEPLLVGFTNAPPEVEKKKGRKVGRVISG------EGLRG 304 (348)
T ss_pred cccc---cCcceechhheehhhhcceeeeeeeeEEecccCCCccccCCCCCccceecccCceeeeeecc------Cccee
Confidence 5777 57999999988887778874 578889982 2222 23345555789999999998 55679
Q ss_pred EEEecCCccCCCCEEEEEECCeEEeEEEEeCCCccC
Q psy4854 81 MGYIEPAYSKVGVELWVRVRDKRVDVKVTKMPFVKS 116 (555)
Q Consensus 81 ~a~v~~~~~~~g~~~~v~~~~~~~~a~v~~~Pf~~~ 116 (555)
||.+..+..+. .-.+..+.|..+.++.. +|+.-+
T Consensus 305 lgllr~e~~~~-~~~~l~~~g~~i~i~~~-~p~W~p 338 (348)
T KOG2929|consen 305 LGLLRLEKFKA-QFYKLTTKGENIKIKPQ-KPEWWP 338 (348)
T ss_pred eeeeehhhhhc-cchhhhccCccceeccC-CCcccc
Confidence 99999887533 32344445655555543 344433
No 38
>PF10396 TrmE_N: GTP-binding protein TrmE N-terminus; InterPro: IPR018948 This family represents the shorter, B, chain of the homo-dimeric structure which is a guanine nucleotide-binding protein that binds and hydrolyses GTP. TrmE is homologous to the tetrahydrofolate-binding domain of N,N-dimethylglycine oxidase and indeed binds formyl-tetrahydrofolate. TrmE actively participates in the formylation reaction of uridine and regulates the ensuing hydrogenation reaction of a Schiff's base intermediate. This B chain is the N-terminal portion of the protein consisting of five beta-strands and three alpha helices and is necessary for mediating dimer formation within the protein []. ; PDB: 1XZQ_B 1XZP_A 3GEE_A 3GEI_B 3GEH_A.
Probab=92.69 E-value=1.2 Score=38.67 Aligned_cols=73 Identities=29% Similarity=0.268 Sum_probs=47.4
Q ss_pred CeEEEEEcCCCHHHHHhhccccCCCCCcccceEeeeecC---c---cE--EEEe--cCccCCCeEEEEecCCc--HHHHH
Q psy4854 343 ERGLIAVQGPLSSTILQRHTDLDLSSLYFMTSRPCTIAG---I---PC--TLTR--AGYTGEDGVEISVPGEQ--CTHIV 410 (555)
Q Consensus 343 ~~~~i~v~GP~A~~vL~~l~~~dl~~l~~~~~~~~~i~g---~---~v--~i~R--~~~~ge~G~eL~~~~~~--a~~l~ 410 (555)
.-++|.|+||+|.+++++++...++ ........+-. . ++ ..++ -+||||+-.||+|.... ...+.
T Consensus 13 aiaiIRiSG~~a~~i~~~~~~~~~~---~r~~~~~~~~~~~~~~iDe~lv~~f~~P~SyTGEd~vEi~~HGg~~v~~~il 89 (114)
T PF10396_consen 13 AIAIIRISGPDALEIAQKLFGKSPK---PRRAYYGTIYDEDGEPIDEVLVLYFPAPRSYTGEDVVEIHCHGGPAVVRRIL 89 (114)
T ss_dssp SEEEEEEESTTHHHHHHTTESSSTT---TTEEEEEEEECSSTCEEEEEEEEEEBTTCSSSSSEEEEEEEESSHHHHHHHH
T ss_pred eEEEEEeEcHHHHHHHHHHhCcccc---CcEEEEEEEEcCCCccccceeEEeecCCCcccCCCEEEEEcCCCHHHHHHHH
Confidence 3588999999999999999943332 22222222221 1 23 3333 27999999999987654 35677
Q ss_pred HHHHcCCC
Q psy4854 411 EALLSDED 418 (555)
Q Consensus 411 ~~L~~ag~ 418 (555)
+.|.+.|.
T Consensus 90 ~~l~~~G~ 97 (114)
T PF10396_consen 90 EALLKAGA 97 (114)
T ss_dssp HHHHHTT-
T ss_pred HHHHHcCc
Confidence 77777763
No 39
>COG0486 ThdF Predicted GTPase [General function prediction only]
Probab=89.58 E-value=0.71 Score=49.44 Aligned_cols=52 Identities=15% Similarity=0.201 Sum_probs=45.5
Q ss_pred CceEEEEEcccHHHHHhhccccCCCCCCCCceEEeeeecCCcceEEEEEEEEe
Q psy4854 247 HMLQTVVTGKHREEWLESICVADVHELDPGKGTLSLFTNEQGGIQDDLIVTKT 299 (555)
Q Consensus 247 ~~~~i~v~G~da~~fLq~l~t~dv~~l~~G~~~yt~~ln~~G~i~~d~~v~r~ 299 (555)
.-+.++|+||+|.+.++.++.. +...++..+.|+.+.+++|.++|+..|..+
T Consensus 18 aI~IvRiSGp~a~~ia~~i~~~-~~~~~~r~a~y~~i~d~~~~~iDe~lvl~f 69 (454)
T COG0486 18 AIGIVRISGPDALEIAQKLFGG-LKLPKPRTAHYGHIKDENGEIIDEVLVLYF 69 (454)
T ss_pred eEEEEEecCHhHHHHHHHHhCC-CCCCCCcEEEEEEEEcCCCcEeeeeeEEEE
Confidence 4578899999999999999998 444568899999999999999999999764
No 40
>COG0486 ThdF Predicted GTPase [General function prediction only]
Probab=78.40 E-value=8.1 Score=41.62 Aligned_cols=74 Identities=28% Similarity=0.271 Sum_probs=49.6
Q ss_pred eEEEEEcCCCHHHHHhhccccCCCCCcccceEeeeecC---c---c--EEEEec--CccCCCeEEEEecCCcH--HHHHH
Q psy4854 344 RGLIAVQGPLSSTILQRHTDLDLSSLYFMTSRPCTIAG---I---P--CTLTRA--GYTGEDGVEISVPGEQC--THIVE 411 (555)
Q Consensus 344 ~~~i~v~GP~A~~vL~~l~~~dl~~l~~~~~~~~~i~g---~---~--v~i~R~--~~~ge~G~eL~~~~~~a--~~l~~ 411 (555)
-+.+.++||+|.+++++++.. +...+.....+..+-. . + +..++. +||||+-.|+.|....+ ..+.+
T Consensus 19 I~IvRiSGp~a~~ia~~i~~~-~~~~~~r~a~y~~i~d~~~~~iDe~lvl~f~aP~SFTGEDvvEi~~HGg~~v~~~iL~ 97 (454)
T COG0486 19 IGIVRISGPDALEIAQKLFGG-LKLPKPRTAHYGHIKDENGEIIDEVLVLYFKAPNSFTGEDVVEIQCHGGPVVVNLILE 97 (454)
T ss_pred EEEEEecCHhHHHHHHHHhCC-CCCCCCcEEEEEEEEcCCCcEeeeeeEEEEeCCCCcccccEEEEEcCCCHHHHHHHHH
Confidence 478899999999999999985 3323333333333321 1 1 333443 79999999999876543 56788
Q ss_pred HHHcCCC
Q psy4854 412 ALLSDED 418 (555)
Q Consensus 412 ~L~~ag~ 418 (555)
.+++.|.
T Consensus 98 ~~l~~Ga 104 (454)
T COG0486 98 LLLKLGA 104 (454)
T ss_pred HHHHcCC
Confidence 8887763
No 41
>PF06978 POP1: Ribonucleases P/MRP protein subunit POP1; InterPro: IPR009723 This entry represents a conserved region approximately 150 residues long located towards the N terminus of the POP1 subunit that is common to both the RNase MRP and RNase P ribonucleoproteins (3.1.26.5 from EC) []. These RNA-containing enzymes generate mature tRNA molecules by cleaving their 5' ends.; GO: 0004526 ribonuclease P activity, 0001682 tRNA 5'-leader removal
Probab=73.26 E-value=4.9 Score=38.30 Aligned_cols=58 Identities=16% Similarity=0.099 Sum_probs=44.6
Q ss_pred CCcChHHHHHCCCEEEeeCCcccccccCCCChHHHHHHHhcCcEEEecCCceEEEEEcc
Q psy4854 198 RTPLYDLHLSHGGKMVPFAGFSMPVQYGAVSITASHLHTRSKVSVFDVSHMLQTVVTGK 256 (555)
Q Consensus 198 ~spl~~~~~~~gA~f~~~~g~e~p~~f~~~~~~~E~~a~r~~v~l~DlS~~~~i~v~G~ 256 (555)
.-|-|-+|.. -..|...-||.+|..=..-+...-|+|.+++|.++|.|+++.|+|+|.
T Consensus 130 wL~THiWHAK-Rf~M~~~wG~~lp~~~~~K~~R~~~Ra~~~~~~~~D~SY~~~i~l~g~ 187 (187)
T PF06978_consen 130 WLETHIWHAK-RFHMIKRWGYRLPLTPTQKSFRATYRASKHGCVLHDASYYSCIELEGT 187 (187)
T ss_pred ccchhhHHHH-HHHHHHHcCCCCCCCCCCcchhHHHHHhcCCEEEEecccceeEEEEeC
Confidence 3455555544 356677889999985433467788889999999999999999999983
No 42
>PF02470 MCE: mce related protein; InterPro: IPR003399 This domain is found in all 24 mce genes associated with the four mammalian cell entry (mce) operons of Mycobacterium tuberculosis and their homologs in other Actinomycetales [, ]. The archetype (mce1A, Rv0169), was isolated as being necessary for colonisation of, and survival within, the macrophage []. The domain is also found in: Chloroplast Ycf22 and related cyanobacterial homologs, the majority of which have an N-terminal transmembrane domain and are putative ABC transporters. Proteobacterial homologs, which include YrbD, YebT, VpsC and Ttg2C, the latter being annotated as a toluene tolerance proteins, belong to the periplasmic substrate-binding ABC transporter superfamily.
Probab=71.08 E-value=40 Score=26.90 Aligned_cols=46 Identities=20% Similarity=0.135 Sum_probs=37.4
Q ss_pred EEeCC-CCCCCCCEEEcCCCcEEEEEeeccccCCCCCeeEEEEecCCc
Q psy4854 42 FTSTG-VPIRPGYEIFNANDQRVGAITSGCPSPSLKKNIAMGYIEPAY 88 (555)
Q Consensus 42 l~~~~-~~~~~g~~v~~~~g~~vG~vTS~~~SP~l~~~I~~a~v~~~~ 88 (555)
+.++. ..+.+|.+|. ..|-.||+|+|-.+++.-++-..-..|+.++
T Consensus 7 ~~~~~~~GL~~gs~V~-~~Gv~VG~V~~i~l~~~~~~v~v~~~i~~~~ 53 (81)
T PF02470_consen 7 VYFDDAGGLSVGSPVR-YRGVEVGKVTSIELDPDGNRVRVTLRIDPDY 53 (81)
T ss_pred EEECCcCCCCCcCEEE-ECCEEEEEEEEEEEcCCCCEEEEEEEEcCCc
Confidence 44444 4578999997 6899999999999988888877888888887
No 43
>TIGR00450 mnmE_trmE_thdF tRNA modification GTPase TrmE. TrmE, also called MnmE and previously designated ThdF (thiophene and furan oxidation protein), is a GTPase involved in tRNA modification to create 5-methylaminomethyl-2-thiouridine in the wobble position of some tRNAs. This protein and GidA form an alpha2/beta2 heterotetramer.
Probab=70.30 E-value=9.3 Score=41.52 Aligned_cols=53 Identities=13% Similarity=0.043 Sum_probs=41.4
Q ss_pred CCceEEEEEcccHHHHHhhccccCCCCCCCCceEEeeeecCCcceEEEEEEEEe
Q psy4854 246 SHMLQTVVTGKHREEWLESICVADVHELDPGKGTLSLFTNEQGGIQDDLIVTKT 299 (555)
Q Consensus 246 S~~~~i~v~G~da~~fLq~l~t~dv~~l~~G~~~yt~~ln~~G~i~~d~~v~r~ 299 (555)
+.-+.|+|+||+|.+.++.++..+.. .++.+..|..+.+++|.++|+..+..+
T Consensus 7 ~~i~viRiSG~~a~~i~~~~~~~~~~-~~~~~~~~~~~~~~~~~~iD~~l~~~f 59 (442)
T TIGR00450 7 SAIHIIRLSGPDSLSILKKITNKLNT-ASGMRIQYGHIIDSNNKCKDDELLFKF 59 (442)
T ss_pred ceEEEEEeehHHHHHHHHHHhCCCCC-CCCcEEEEEEEECCCCCEeeeEEEEEE
Confidence 34578899999999999999843221 145678898888888999999988664
No 44
>PRK05291 trmE tRNA modification GTPase TrmE; Reviewed
Probab=59.06 E-value=30 Score=37.63 Aligned_cols=72 Identities=31% Similarity=0.325 Sum_probs=46.6
Q ss_pred eEEEEEcCCCHHHHHhhccccCCCCCcccceEeeeec--Cc---cEEE--Ee--cCccCCCeEEEEecCCc--HHHHHHH
Q psy4854 344 RGLIAVQGPLSSTILQRHTDLDLSSLYFMTSRPCTIA--GI---PCTL--TR--AGYTGEDGVEISVPGEQ--CTHIVEA 412 (555)
Q Consensus 344 ~~~i~v~GP~A~~vL~~l~~~dl~~l~~~~~~~~~i~--g~---~v~i--~R--~~~~ge~G~eL~~~~~~--a~~l~~~ 412 (555)
-++|.|+||+|.+++++++...++ +.....+..+- +. ++.+ ++ -+||||+-.||+|.... ...+.+.
T Consensus 19 i~viRiSG~~a~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~iD~~l~~~f~~P~S~TGEd~vEi~~HG~~~v~~~il~~ 96 (449)
T PRK05291 19 IGIIRISGPDALEIAQKLFGKKLP--KPRTAHYGHIRDPGEVIDEVLVLYFPAPNSFTGEDVVEIQCHGGPAVLNLILEL 96 (449)
T ss_pred EEEEEEEhHHHHHHHHHHhCCCCC--CCcEEEEEEEecCCcccceEEEEEecCCCCccCCcEEEEECCCCHHHHHHHHHH
Confidence 488999999999999999853221 12222222221 11 2333 32 37999999999987654 4567888
Q ss_pred HHcCC
Q psy4854 413 LLSDE 417 (555)
Q Consensus 413 L~~ag 417 (555)
|.+.|
T Consensus 97 l~~~g 101 (449)
T PRK05291 97 LLALG 101 (449)
T ss_pred HHHcC
Confidence 87766
No 45
>TIGR00450 mnmE_trmE_thdF tRNA modification GTPase TrmE. TrmE, also called MnmE and previously designated ThdF (thiophene and furan oxidation protein), is a GTPase involved in tRNA modification to create 5-methylaminomethyl-2-thiouridine in the wobble position of some tRNAs. This protein and GidA form an alpha2/beta2 heterotetramer.
Probab=59.01 E-value=40 Score=36.68 Aligned_cols=75 Identities=27% Similarity=0.253 Sum_probs=47.6
Q ss_pred CeEEEEEcCCCHHHHHhhccccCCCCCcccceEeeee---cCc---cEEE--Ee--cCccCCCeEEEEecCCc--HHHHH
Q psy4854 343 ERGLIAVQGPLSSTILQRHTDLDLSSLYFMTSRPCTI---AGI---PCTL--TR--AGYTGEDGVEISVPGEQ--CTHIV 410 (555)
Q Consensus 343 ~~~~i~v~GP~A~~vL~~l~~~dl~~l~~~~~~~~~i---~g~---~v~i--~R--~~~~ge~G~eL~~~~~~--a~~l~ 410 (555)
.-++|.|+||+|.+++++++..+.. .+.....+..+ .+. ++.+ ++ -+||||+=.||+|.... ...+.
T Consensus 8 ~i~viRiSG~~a~~i~~~~~~~~~~-~~~~~~~~~~~~~~~~~~iD~~l~~~f~~P~S~TGEDvvEi~~HGg~~v~~~il 86 (442)
T TIGR00450 8 AIHIIRLSGPDSLSILKKITNKLNT-ASGMRIQYGHIIDSNNKCKDDELLFKFVAPNSYTGEDVIEIQCHGSMLIVQEIL 86 (442)
T ss_pred eEEEEEeehHHHHHHHHHHhCCCCC-CCCcEEEEEEEECCCCCEeeeEEEEEEcCCCCcccccEEEEECCCCHHHHHHHH
Confidence 3488999999999999999853111 11222222222 121 2333 33 37999999999987654 45677
Q ss_pred HHHHcCCC
Q psy4854 411 EALLSDED 418 (555)
Q Consensus 411 ~~L~~ag~ 418 (555)
+.|.+.|.
T Consensus 87 ~~l~~~g~ 94 (442)
T TIGR00450 87 QLCLKSGA 94 (442)
T ss_pred HHHHHcCC
Confidence 88877663
No 46
>PRK05291 trmE tRNA modification GTPase TrmE; Reviewed
Probab=53.65 E-value=22 Score=38.78 Aligned_cols=51 Identities=12% Similarity=0.180 Sum_probs=41.4
Q ss_pred CCceEEEEEcccHHHHHhhccccCCCCCCCCceEEeeeecCCcceEEEEEEEEe
Q psy4854 246 SHMLQTVVTGKHREEWLESICVADVHELDPGKGTLSLFTNEQGGIQDDLIVTKT 299 (555)
Q Consensus 246 S~~~~i~v~G~da~~fLq~l~t~dv~~l~~G~~~yt~~ln~~G~i~~d~~v~r~ 299 (555)
+.-+.|+|+||++.+.++.++...++ ++..+.|..+.++ |.++|+..+..+
T Consensus 17 ~~i~viRiSG~~a~~~~~~~~~~~~~--~~~~~~~~~~~~~-~~~iD~~l~~~f 67 (449)
T PRK05291 17 GGIGIIRISGPDALEIAQKLFGKKLP--KPRTAHYGHIRDP-GEVIDEVLVLYF 67 (449)
T ss_pred ceEEEEEEEhHHHHHHHHHHhCCCCC--CCcEEEEEEEecC-CcccceEEEEEe
Confidence 44578999999999999999965443 5788999888885 888999888664
No 47
>PRK10807 paraquat-inducible protein B; Provisional
Probab=53.09 E-value=43 Score=37.48 Aligned_cols=56 Identities=20% Similarity=0.229 Sum_probs=46.7
Q ss_pred EEeCC-CCCCCC-CEEEcCCCcEEEEEeeccccCCCCCeeEEEEecCCcc---CCCCEEEEE
Q psy4854 42 FTSTG-VPIRPG-YEIFNANDQRVGAITSGCPSPSLKKNIAMGYIEPAYS---KVGVELWVR 98 (555)
Q Consensus 42 l~~~~-~~~~~g-~~v~~~~g~~vG~vTS~~~SP~l~~~I~~a~v~~~~~---~~g~~~~v~ 98 (555)
+.+.. ..+..| ++|+ -.|-.||+||+-.+|+.+++-+.-+.|++++. ..++.++|.
T Consensus 48 l~~~~a~gl~~GkT~I~-yrgv~VG~V~~v~l~~d~~~V~~~~~i~~~~~~ll~~~trFWvv 108 (547)
T PRK10807 48 LITTNAEGIEAGKTTIK-SRSVDVGVVESVTLSDDLTHVEIKARLNSGMEKLLHKDSVFWVV 108 (547)
T ss_pred EEECCCCCcCcCCceeE-ECCceEEEEEEEEECCCCCeEEEEEEECccHHHhhcCCCEEEEe
Confidence 44444 357889 8997 57899999999999999999999999999874 678888875
No 48
>PF14578 GTP_EFTU_D4: Elongation factor Tu domain 4; PDB: 1G7R_A 1G7S_A 1G7T_A 1XE1_A.
Probab=50.51 E-value=13 Score=30.25 Aligned_cols=51 Identities=25% Similarity=0.395 Sum_probs=35.2
Q ss_pred EEEEEEeCCCCCCCCCEEEcCCCcEEEEEeeccccCCCCCeeEEEEecCCccCCCCEEEEEECCe
Q psy4854 38 KRTGFTSTGVPIRPGYEIFNANDQRVGAITSGCPSPSLKKNIAMGYIEPAYSKVGVELWVRVRDK 102 (555)
Q Consensus 38 ~lvgl~~~~~~~~~g~~v~~~~g~~vG~vTS~~~SP~l~~~I~~a~v~~~~~~~g~~~~v~~~~~ 102 (555)
-++| ++.+..+++|+++ +|..||.|.|=-.. ++++ +.+..|+++.+.|.|.
T Consensus 20 ~IvG-~V~~G~ik~G~~l---~G~~iG~I~sIe~~---~k~v-------~~A~~G~eVai~Ieg~ 70 (81)
T PF14578_consen 20 AIVG-EVLEGIIKPGYPL---DGRKIGRIKSIEDN---GKNV-------DEAKKGDEVAISIEGP 70 (81)
T ss_dssp EEEE-EEEEEEEETT-EE---CSSCEEEEEEEEET---TEEE-------SEEETT-EEEEEEET-
T ss_pred eEEE-EEeeeEEeCCCcc---CCEEEEEEEEeEEC---CcCc-------cccCCCCEEEEEEeCC
Confidence 7899 8877778999999 67789999884221 3333 4567788888888774
No 49
>PF13953 PapC_C: PapC C-terminal domain; PDB: 3L48_E 2XET_A 3RFZ_E 2KT6_A.
Probab=44.54 E-value=45 Score=25.92 Aligned_cols=46 Identities=17% Similarity=0.245 Sum_probs=33.4
Q ss_pred CCCCCCCCCEEEcCCCcEEEEEeeccccCCCCCeeEEEEecCCccCCCCEEEEEECCe
Q psy4854 45 TGVPIRPGYEIFNANDQRVGAITSGCPSPSLKKNIAMGYIEPAYSKVGVELWVRVRDK 102 (555)
Q Consensus 45 ~~~~~~~g~~v~~~~g~~vG~vTS~~~SP~l~~~I~~a~v~~~~~~~g~~~~v~~~~~ 102 (555)
+|.+++-|..|++.+|+.+|.|-.+ |++||...- ...+|.|...++
T Consensus 7 ~G~~lPfGA~v~~~~g~~~g~Vg~~----------G~vyl~~~~--~~~~L~V~w~~~ 52 (68)
T PF13953_consen 7 DGKPLPFGASVSDEDGNNIGIVGQD----------GQVYLSGLP--PKGTLTVKWGDG 52 (68)
T ss_dssp TSEE--TT-EEEETTSSEEEEB-GC----------GEEEEEEE---TCEEEEEESTSC
T ss_pred CCCcCCCCcEEEcCCCCEEEEEcCC----------CEEEEECCC--CCcEEEEEECCC
Confidence 3557899999998889999999877 788998763 678888887665
No 50
>PF11834 DUF3354: Domain of unknown function (DUF3354); InterPro: IPR021789 Potassium channels take part in important processes of higher plants, including opening and closing of stomatal pores and leaf movement. Inward rectifying potassium (K(+)in) channels play an important role in turgor regulation and ion uptake in higher plants. All of them comprise, from their N-terminal to their C-terminal ends: a short hydrophilic region, a hydrophobic region structurally analogous and partially homologous to the transmembrane domain of voltage-gated animal channels from the Shaker superfamily, a putative cyclic nucleotide-binding domain, and a conserved C-terminal KHA domain. Between these last two regions, some of them (AKT1, AKT2 and SKT1) contain an ankyrin-repeat domain with six repeats homologous to those of human erythrocyte ankyrin. This entry represents the KHA domain which is unique to plant K(+)in channels. The KHA domain contains two high-homology blocks enriched for hydrophobic and acidic residues, respectively. The KHA domain is essential for interaction of plant K(+)in channels. The KHA domain mediates tetramerization and/or stabilisation of the heteromers [, , ].
Probab=39.37 E-value=49 Score=26.10 Aligned_cols=44 Identities=25% Similarity=0.225 Sum_probs=30.6
Q ss_pred ccHHHHHhhccccCCCCCCCCceEEeeeecCCcceEEEEEEEEecCCeEEE
Q psy4854 256 KHREEWLESICVADVHELDPGKGTLSLFTNEQGGIQDDLIVTKTLEDSLFL 306 (555)
Q Consensus 256 ~da~~fLq~l~t~dv~~l~~G~~~yt~~ln~~G~i~~d~~v~r~~~d~~~l 306 (555)
|+..+=|=.+.+..... . -+.++|++|.-++|+.+.|-+| ++++
T Consensus 25 P~SleeLl~ia~~kfg~-----~-~~~v~~~dgaeIdDI~~IRDgD-~L~~ 68 (69)
T PF11834_consen 25 PDSLEELLKIASEKFGF-----S-ATKVLNEDGAEIDDIDVIRDGD-HLYL 68 (69)
T ss_pred CccHHHHHHHHHHHhCC-----C-ceEEEcCCCCEEeEEEEEEcCC-EEEE
Confidence 56555454454544432 1 4688999999999999999874 6665
No 51
>KOG3322|consensus
Probab=28.77 E-value=55 Score=36.99 Aligned_cols=41 Identities=22% Similarity=0.280 Sum_probs=31.7
Q ss_pred cEEEEEeeccccCCCCCeeEEEEecCCccCCCCEEEEEECC
Q psy4854 61 QRVGAITSGCPSPSLKKNIAMGYIEPAYSKVGVELWVRVRD 101 (555)
Q Consensus 61 ~~vG~vTS~~~SP~l~~~I~~a~v~~~~~~~g~~~~v~~~~ 101 (555)
..||.||+|.|+-..+++=|+|+|+...++.-..=.|-||+
T Consensus 643 ~ligfvT~g~~~ln~g~~~~i~~v~~~t~~~~~~~yvlir~ 683 (688)
T KOG3322|consen 643 GLIGFVTLGLFALNYGKGKGIGFVRNSTSKYYHPGYVLIRN 683 (688)
T ss_pred eeEEEEeechhhhhcCCCceeeEEecccccccCCceEEEec
Confidence 58999999999999999999999998755443443444443
No 52
>PF12396 DUF3659: Protein of unknown function (DUF3659) ; InterPro: IPR022124 This domain family is found in bacteria and eukaryotes, and is approximately 70 amino acids in length.
Probab=27.88 E-value=53 Score=25.49 Aligned_cols=28 Identities=14% Similarity=0.331 Sum_probs=19.2
Q ss_pred CCCCCEEEcCCCcEEEEEeeccccCCCC
Q psy4854 49 IRPGYEIFNANDQRVGAITSGCPSPSLK 76 (555)
Q Consensus 49 ~~~g~~v~~~~g~~vG~vTS~~~SP~l~ 76 (555)
+...-.|++.+|+.||+|+.|-.+--.+
T Consensus 9 Vnk~G~V~d~~G~~vG~vveGd~k~L~G 36 (64)
T PF12396_consen 9 VNKDGNVVDDDGNVVGRVVEGDPKKLVG 36 (64)
T ss_pred ECCCCeEECCCCCEEEEEecCCHHHhcC
Confidence 3334456788999999999995444333
No 53
>KOG0695|consensus
Probab=25.12 E-value=64 Score=33.51 Aligned_cols=48 Identities=15% Similarity=0.152 Sum_probs=36.2
Q ss_pred cCCcccccchhHH---HHHHHHcCCCCCcccccccCCCCCCCCchhhhhhcccc
Q psy4854 130 KGDEPAYSKVGVE---LWVRVRDKRVDVKVTKMPFLKSNYHTPPKYFLKFLSFF 180 (555)
Q Consensus 130 ~~~~~~~~~~g~~---~a~~~~~g~~~~~~~~~d~~r~~~~~~~~~~~~~~~e~ 180 (555)
.|.||+||--=++ |.-.|+.|++++|+..+|-.- +|+.+|+-+-+.|.
T Consensus 424 rgeeygfsvdwwalgvlmfemmagrspfdivgm~n~d---~ntedylfqvilek 474 (593)
T KOG0695|consen 424 RGEEYGFSVDWWALGVLMFEMMAGRSPFDIVGMDNPD---MNTEDYLFQVILEK 474 (593)
T ss_pred cccccCceehHHHHHHHHHHHHcCCCCcceecCCCcc---cchhHHHHHHHhhh
Confidence 4899999964333 344588999999999988763 56678998876653
No 54
>TIGR01377 soxA_mon sarcosine oxidase, monomeric form. Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms
Probab=24.46 E-value=47 Score=34.66 Aligned_cols=25 Identities=12% Similarity=0.049 Sum_probs=22.8
Q ss_pred hhHHHHHHHHcCCCCCcccccccCC
Q psy4854 139 VGVELWVRVRDKRVDVKVTKMPFLK 163 (555)
Q Consensus 139 ~g~~~a~~~~~g~~~~~~~~~d~~r 163 (555)
.|+.||+||.+|+|+.|+..++++|
T Consensus 349 ~g~~la~li~~~~~~~~~~~f~~~R 373 (380)
T TIGR01377 349 VGKILAELAMKLKPSYDLAIFSLNR 373 (380)
T ss_pred HHHHHHHHHhcCCCCCCccccChhh
Confidence 5789999999999999999999888
No 55
>PF05239 PRC: PRC-barrel domain; InterPro: IPR007903 The PRC-barrel is an all beta barrel domain found in photosynthetic reaction centre subunit H of the purple bacteria. PRC-barrels are approximately 80 residues long, and found widely represented in bacteria, archaea and plants. This domain is also present at the C terminus of the pan-bacterial protein RimM, which is involved in ribosomal maturation and processing of 16S rRNA. A family of small proteins conserved in all known euryarchaea are composed entirely of a single stand-alone copy of the domain [].; PDB: 2QGG_A 3H9N_A 2WJN_H 2PRC_H 5PRC_H 2X5V_H 1DXR_H 1R2C_H 3G7F_H 1PRC_H ....
Probab=24.14 E-value=1.4e+02 Score=23.39 Aligned_cols=36 Identities=14% Similarity=0.266 Sum_probs=26.9
Q ss_pred CCCEEEcCCCcEEEEEeeccccCCCCCeeEEEEecC
Q psy4854 51 PGYEIFNANDQRVGAITSGCPSPSLKKNIAMGYIEP 86 (555)
Q Consensus 51 ~g~~v~~~~g~~vG~vTS~~~SP~l~~~I~~a~v~~ 86 (555)
.|.+|++.+|+.+|+|..-.+.+.-++..++..-..
T Consensus 10 ~g~~V~~~~G~~iG~V~di~id~~~~~i~~i~v~~~ 45 (79)
T PF05239_consen 10 IGKEVIDRDGEKIGKVKDIVIDPKTGKIVGIVVSSG 45 (79)
T ss_dssp TTSEEEETTSCEEEEEEEEEEETTTTEEEEEEEEET
T ss_pred cCCEEEcCCCCEEEEEEEEEEeCCCCCEEEEEEcCC
Confidence 378999888999999998888887555555444333
No 56
>PF00673 Ribosomal_L5_C: ribosomal L5P family C-terminus; InterPro: IPR002132 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. Ribosomal protein L5, ~180 amino acids in length, is one of the proteins from the large ribosomal subunit. In Escherichia coli, L5 is known to be involved in binding 5S RNA to the large ribosomal subunit. It belongs to a family of ribosomal proteins which, on the basis of sequence similarities [, , , ], groups: Eubacterial L5. Algal chloroplast L5. Cyanelle L5. Archaebacterial L5. Mammalian L11. Tetrahymena thermophila L21. Dictyostelium discoideum (Slime mold) L5 Saccharomyces cerevisiae (Baker's yeast) L16 (39A). Plant mitochondrial L5. ; GO: 0003735 structural constituent of ribosome, 0006412 translation, 0005622 intracellular, 0005840 ribosome; PDB: 1IQ4_B 2ZJR_D 2ZJP_D 3PIO_D 3CF5_D 2ZJQ_D 3DLL_D 3PIP_D 2WDL_G 3UZN_G ....
Probab=21.61 E-value=66 Score=26.96 Aligned_cols=40 Identities=18% Similarity=0.254 Sum_probs=27.5
Q ss_pred EEEEEcccHHHHHhhccccCCCCCCCCceEEeeeecCCcc
Q psy4854 250 QTVVTGKHREEWLESICVADVHELDPGKGTLSLFTNEQGG 289 (555)
Q Consensus 250 ~i~v~G~da~~fLq~l~t~dv~~l~~G~~~yt~~ln~~G~ 289 (555)
++.++|+.+.+||++++..=+++++..+....--.|..|.
T Consensus 5 kvTLRg~~m~~FL~kli~~vlPrik~f~g~~~~~fd~~Gn 44 (95)
T PF00673_consen 5 KVTLRGKKMYEFLDKLITIVLPRIKDFKGLKASSFDNSGN 44 (95)
T ss_dssp EEEEEHHHHHHHHHHHHHTTTTTSSSTSSBSSTTBSSSSE
T ss_pred EEEEccHHHHHHHHHHHHHhhhhcccccccCccccCCCce
Confidence 6789999999999999999776655444332222344443
No 57
>PF09939 DUF2171: Uncharacterized protein conserved in bacteria (DUF2171); InterPro: IPR018684 This family of various hypothetical prokaryotic proteins has no known function.
Probab=20.97 E-value=1e+02 Score=24.20 Aligned_cols=21 Identities=19% Similarity=0.404 Sum_probs=18.1
Q ss_pred CCCCCEEEcCCCcEEEEEeec
Q psy4854 49 IRPGYEIFNANDQRVGAITSG 69 (555)
Q Consensus 49 ~~~g~~v~~~~g~~vG~vTS~ 69 (555)
++++.+|+.++|..||.|..-
T Consensus 2 IkehmeVi~sdG~~vGtVDhv 22 (67)
T PF09939_consen 2 IKEHMEVIGSDGVHVGTVDHV 22 (67)
T ss_pred ccCCCEEEeCCCCEEEEEeeE
Confidence 578999998899999999763
No 58
>PF08170 POPLD: POPLD (NUC188) domain; InterPro: IPR012590 This domain is found in POP1-like nucleolar proteins [].; GO: 0004526 ribonuclease P activity, 0006396 RNA processing
Probab=20.63 E-value=1.2e+02 Score=25.17 Aligned_cols=35 Identities=23% Similarity=0.270 Sum_probs=29.3
Q ss_pred eEEEEecCCcHHHHHHHHHcCCCeeecCchhhHhhh
Q psy4854 396 GVEISVPGEQCTHIVEALLSDEDVKLAGLGARDSLS 431 (555)
Q Consensus 396 G~eL~~~~~~a~~l~~~L~~ag~~~~~G~~a~~~lR 431 (555)
||.|++|..-+..+|..|...| +.++|+.-++.+-
T Consensus 1 gw~lIlP~~w~~~fW~~L~~~g-~r~~GL~e~~~~~ 35 (92)
T PF08170_consen 1 GWDLILPWGWGMPFWIALVYRG-ARAGGLRERRQLA 35 (92)
T ss_pred CeEEEEecHHHHHHHHHHHHhC-CeeehHHHHHHHH
Confidence 7899999999999999999886 6788887665554
Done!