Query psy4854
Match_columns 555
No_of_seqs 449 out of 3290
Neff 7.8
Searched_HMMs 29240
Date Fri Aug 16 19:22:10 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy4854.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/4854hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1pj5_A N,N-dimethylglycine oxi 100.0 1.9E-62 6.6E-67 566.1 32.4 387 139-533 368-813 (830)
2 3gir_A Aminomethyltransferase; 100.0 1.3E-60 4.5E-65 501.9 30.8 330 189-533 27-378 (393)
3 1vlo_A Aminomethyltransferase; 100.0 1.7E-59 5.7E-64 493.5 30.7 332 185-533 3-361 (381)
4 1wsr_A Aminomethyltransferase; 100.0 8.2E-59 2.8E-63 488.3 33.8 335 193-533 2-359 (375)
5 1yx2_A Aminomethyltransferase; 100.0 6.6E-59 2.2E-63 487.5 31.6 330 192-533 1-355 (365)
6 3tfi_A GCVT-like aminomethyltr 100.0 1.2E-58 4.1E-63 485.0 28.8 329 189-533 5-361 (369)
7 1wos_A Aminomethyltransferase; 100.0 5.4E-58 1.9E-62 480.4 32.2 326 196-532 1-347 (364)
8 1v5v_A Aminomethyltransferase; 100.0 7.5E-57 2.6E-61 476.8 32.1 331 194-533 3-382 (401)
9 2gag_A Heterotetrameric sarcos 100.0 2.1E-55 7.2E-60 513.0 32.8 350 181-533 550-948 (965)
10 3ttg_A Putative aminomethyltra 100.0 4.1E-47 1.4E-51 395.6 19.6 290 222-526 16-341 (355)
11 1vly_A SPOT PR51, unknown prot 100.0 3.3E-40 1.1E-44 341.7 24.0 270 238-531 29-325 (338)
12 2gag_C Heterotetrameric sarcos 100.0 2.8E-28 9.7E-33 234.9 11.8 163 235-418 27-194 (210)
13 1x31_C Sarcosine oxidase gamma 99.9 1.6E-27 5.6E-32 229.0 12.9 159 236-418 26-192 (206)
14 3gir_A Aminomethyltransferase; 99.9 2.5E-25 8.6E-30 233.7 12.3 118 4-121 275-393 (393)
15 1wsr_A Aminomethyltransferase; 99.9 2.9E-23 1E-27 217.8 12.4 119 3-121 256-374 (375)
16 3tfi_A GCVT-like aminomethyltr 99.9 1.7E-22 5.9E-27 211.1 12.9 108 3-114 258-369 (369)
17 1yx2_A Aminomethyltransferase; 99.8 3E-21 1E-25 201.8 13.6 110 3-116 254-365 (365)
18 1v5v_A Aminomethyltransferase; 99.8 4.4E-20 1.5E-24 195.1 14.7 110 4-118 284-394 (401)
19 1wos_A Aminomethyltransferase; 99.8 4.7E-20 1.6E-24 192.7 14.4 111 3-120 250-362 (364)
20 1vlo_A Aminomethyltransferase; 99.8 1.1E-19 3.9E-24 190.5 13.1 108 3-117 259-372 (381)
21 3ttg_A Putative aminomethyltra 99.8 5.2E-20 1.8E-24 191.3 10.3 105 4-114 245-355 (355)
22 1pj5_A N,N-dimethylglycine oxi 99.8 1.9E-19 6.7E-24 207.4 10.9 111 3-118 713-825 (830)
23 2gag_A Heterotetrameric sarcos 99.7 4.2E-17 1.4E-21 190.3 10.1 113 3-120 839-962 (965)
24 1vly_A SPOT PR51, unknown prot 99.6 2.6E-16 8.9E-21 162.5 8.9 106 4-116 225-337 (338)
25 2gag_C Heterotetrameric sarcos 99.4 2.8E-13 9.7E-18 130.1 8.5 168 331-550 29-204 (210)
26 1x31_C Sarcosine oxidase gamma 99.3 3.5E-12 1.2E-16 122.1 8.7 166 331-548 27-200 (206)
27 2bry_A NEDD9 interacting prote 96.5 0.00034 1.2E-08 75.5 -0.9 63 140-206 425-495 (497)
28 3geh_A MNME, tRNA modification 82.2 3.8 0.00013 43.2 9.0 66 246-311 22-96 (462)
29 3geh_A MNME, tRNA modification 79.8 8.2 0.00028 40.7 10.5 76 343-418 23-112 (462)
30 3gee_A MNME, tRNA modification 78.7 5.8 0.0002 42.0 9.0 65 246-311 28-104 (476)
31 3gee_A MNME, tRNA modification 72.1 13 0.00044 39.3 9.5 75 344-418 30-120 (476)
32 1xzp_A Probable tRNA modificat 64.2 8.9 0.00031 40.6 6.3 63 246-311 46-116 (482)
33 3l48_A Outer membrane usher pr 52.3 86 0.0029 25.0 8.8 62 37-112 9-71 (94)
34 1xzp_A Probable tRNA modificat 26.3 2.3E+02 0.008 29.5 9.6 72 344-417 48-131 (482)
No 1
>1pj5_A N,N-dimethylglycine oxidase; channelling, FAD binding, folate binding, amine oxidase, oxidoreductase; HET: FAD; 1.61A {Arthrobacter globiformis} SCOP: b.44.2.1 c.3.1.2 d.16.1.5 d.250.1.1 PDB: 1pj6_A* 1pj7_A* 3gsi_A*
Probab=100.00 E-value=1.9e-62 Score=566.14 Aligned_cols=387 Identities=21% Similarity=0.295 Sum_probs=334.9
Q ss_pred hhHHHHHHHHcCCCCCcccccccCC-CCCCCCchhhhhhcccc----ccccccCCCCCCCCCCCCCcChHHHHHCCCEEE
Q psy4854 139 VGVELWVRVRDKRVDVKVTKMPFLK-SNYHTPPKYFLKFLSFF----SGLTFVFSPGSSPSAEQRTPLYDLHLSHGGKMV 213 (555)
Q Consensus 139 ~g~~~a~~~~~g~~~~~~~~~d~~r-~~~~~~~~~~~~~~~e~----~~~~~p~~~~~~~r~~r~spl~~~~~~~gA~f~ 213 (555)
.|+.||+||.++.|+.|+..++++| ...+.+++|+++++.|+ |.++||++|+.++|++|+||||++|.++||+|.
T Consensus 368 ~g~~la~li~~~~~~~dl~~~~~~Rf~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~tpl~~~~~~~ga~~~ 447 (830)
T 1pj5_A 368 VAKAMAELLTTGRSETDLGECDITRFEDVQLTPEYVSETSQQNFVEIYDVLHPLQPRLSPRNLRVSPFHARHKELGAFFL 447 (830)
T ss_dssp HHHHHHHHHHHSSCSSCCTTTBGGGCCGGGGSHHHHHHHHHHHHHTTTCCCCTTCCCSSSCCSBCCTTHHHHHHTTEEEE
T ss_pred HHHHHHHHHhCCCCCccccccChhhhccccCCHHHHHHHHHHHHHHhhccCCCCCccccccccccCcCHHHHHHcCCEEE
Confidence 4699999999999999999999999 77788899999999875 777899999999999999999999999999999
Q ss_pred eeCCcccccccCCC--------------------------ChHHHHHHHhcCcEEEecCCceEEEEEcccHHHHHhhccc
Q psy4854 214 PFAGFSMPVQYGAV--------------------------SITASHLHTRSKVSVFDVSHMLQTVVTGKHREEWLESICV 267 (555)
Q Consensus 214 ~~~g~e~p~~f~~~--------------------------~~~~E~~a~r~~v~l~DlS~~~~i~v~G~da~~fLq~l~t 267 (555)
+++||+||.||+.+ .+.+||+|+|++|+|||+|||++|.|+|+||.+|||+++|
T Consensus 448 ~~~g~~~p~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~a~r~~~gl~d~s~~~~~~v~G~da~~fL~~~~t 527 (830)
T 1pj5_A 448 EAGGWERPYWFEANAALLKEMPAEWLPPARDAWSGMFSSPIAAAEAWKTRTAVAMYDMTPLKRLEVSGPGALKLLQELTT 527 (830)
T ss_dssp EETTEEEEEEEGGGGGGGGGSCGGGCCCCCCHHHHTTCCTHHHHHHHHHHHSCEEEECTTSCEEEEESTTHHHHHHHHBS
T ss_pred EECCEecccccCCcccccccccccccccccccccccccchhHHHHHHHHHhCeEEEEcCcEEEEEEECcCHHHHHHHhcc
Confidence 99999999999731 0679999999999999999999999999999999999999
Q ss_pred cCCCCCCCCceEEeeeecCCcceEEEEEEEEecCCeEEEEecccchHHHHHHHHHHHhhhc--cCCCC-EEEEEccCCCe
Q psy4854 268 ADVHELDPGKGTLSLFTNEQGGIQDDLIVTKTLEDSLFLVSNASRRKVDMDLMVAAQDRFK--SLGKD-IHLQFLSAEER 344 (555)
Q Consensus 268 ~dv~~l~~G~~~yt~~ln~~G~i~~d~~v~r~~~d~~~l~~~~~~~~~~~~~l~~~~~~~~--~~~~~-V~i~dvs~~~~ 344 (555)
||| .+++|+++||+|||++|+|++|++|+|+++++|+| +++.+.+++||++++..+. ..+.+ |+|+|+| +++
T Consensus 528 ~dv-~l~~g~~~y~~~l~~~G~i~~d~~v~~~~~~~~~l---~~~~~~~~~~l~~~~~~~~~~~~~~~~v~i~d~s-~~~ 602 (830)
T 1pj5_A 528 ADL-AKKPGAVTYTLLLDHAGGVRSDITVARLSEDTFQL---GANGNIDTAYFERAARHQTQSGSATDWVQVRDTT-GGT 602 (830)
T ss_dssp SCC-CSCTTBEEEEEEECTTSCEEEEEEEEEEETTEEEE---ECSSHHHHHHHHHHHHHHHHHSCTTCCCEEEECG-GGE
T ss_pred ccc-cCCCCcEEEeEEECCCCEEEEeEEEEEEeCCEEEE---EeCHHHHHHHHHHHhhhcccccCCCCeEEEEEcc-CCE
Confidence 999 78999999999999999999999999999988888 3456679999999986320 01126 9999998 568
Q ss_pred EEEEEcCCCHHHHHhhccccCCCC--CcccceEeeeecCccEEEEecCccCCCeEEEEecCCcHHHHHHHHHcCCC---e
Q psy4854 345 GLIAVQGPLSSTILQRHTDLDLSS--LYFMTSRPCTIAGIPCTLTRAGYTGEDGVEISVPGEQCTHIVEALLSDED---V 419 (555)
Q Consensus 345 ~~i~v~GP~A~~vL~~l~~~dl~~--l~~~~~~~~~i~g~~v~i~R~~~~ge~G~eL~~~~~~a~~l~~~L~~ag~---~ 419 (555)
+.|.|+||+|+++|++++..|++. ++++++....+++.+++++|++|+||+||||++|.+++.++|++|+++|+ +
T Consensus 603 ~~~~l~Gp~a~~~l~~~~~~dl~~~~~~~~~~~~~~~~g~~~~~~r~~~tge~g~ei~~~~~~~~~l~~~l~~ag~~~~~ 682 (830)
T 1pj5_A 603 CCIGLWGPLARDLVSKVSDDDFTNDGLKYFRAKNVVIGGIPVTAMRLSYVGELGWELYTSADNGQRLWDALWQAGQPFGV 682 (830)
T ss_dssp EEEEEESTTHHHHHTTTCCSCCSTTTSCTTBEEEEEETTEEEEEECCCTTSSSEEEEEEEHHHHHHHHHHHHHHHGGGTC
T ss_pred EEEEEECcCHHHHHHHhcCcCCccccCCCceEEEEEECCEEEEEEECcccCCCcEEEEecHHHHHHHHHHHHhhhhhcCC
Confidence 999999999999999998877754 99999999999999999999999999999999999999999999998763 8
Q ss_pred eecCchhhHhhh---------ccCCCC-CCccccccccccccccc-CCceeEEecc-C---CcEEEEEEeec-C-c-c-c
Q psy4854 420 KLAGLGARDSLS---------GDITLN-TPVPHGSLKLSNDRFKS-LGKDIHLQFL-S---PEERGLIAVQG-P-L-S-S 480 (555)
Q Consensus 420 ~~~G~~a~~~lR---------~dl~~~-~P~E~gl~~~v~~~K~~-iG~eal~~~~-~---~~lv~l~~~~g-p-~-a-~ 480 (555)
.++|+.|+++|| +|++++ +|+|+||+|+|+|+|+| +|||++++++ . |++++|.+..+ + + . .
T Consensus 683 ~~~g~~a~~~lRle~G~~~~g~d~~~~~~P~e~~l~~~v~~~kg~f~G~e~~~r~~~~g~~rrlv~l~~~~~~~~~~~g~ 762 (830)
T 1pj5_A 683 IAAGRAAFSSLRLEKGYRSWGTDMTTEHDPFEAGLGFAVKMAKESFIGKGALEGRTEEASARRLRCLTIDDGRSIVLGKE 762 (830)
T ss_dssp EEECHHHHHHHHHHTTCCCBTTTBCTTSCTTTTTCGGGCCTTSSCCTTHHHHTTCCSTTCSEEEEEEEETTSCCCCCSCC
T ss_pred EEehhhhhhhhhhhcCCccccccCCCCCCHHHCCCcCeeeCCCCCCCCHHHHHHHHhcCCCeEEEEEEEeCCCCCCCCCC
Confidence 999999999999 899999 99999999999999988 9999999887 2 78999998431 2 2 2 6
Q ss_pred eEeeccccc-ceeeEEEEeeeeecccCeeEEEEeccccCCceEEEEeCCcchHH
Q psy4854 481 TILQRHTDL-DLSSLYFMTSRPCTIAGIPCTLTRAGYTGEDGVEISVPGEQCTH 533 (555)
Q Consensus 481 ~v~~~~~~~-~~t~~~~~~~~~~~~~~i~~~~~r~~y~ge~g~EI~i~~~~~~~ 533 (555)
+|+.++..+ .+|+..| ++.....|.+++++.++..+..++|.+.++..++
T Consensus 763 ~v~~~g~~vG~vts~~~---sp~~~~~iala~v~~~~~~g~~~~v~~~~~~~~a 813 (830)
T 1pj5_A 763 PVFYKEQAVGYVTSAAY---GYTVAKPIAYSYLPGTVSVGDSVDIEYFGRRITA 813 (830)
T ss_dssp EEEETTEEEEECCSEEE---ETTTTEEEEEEEEETTCCTTCEEEEEETTEEEEE
T ss_pred EEeeCCeEEEEEeccee---ccccCceEEEEEechhhcCCCEEEEEECCEEEEE
Confidence 777644321 3444333 4444446888899988865556888888875544
No 2
>3gir_A Aminomethyltransferase; glycine cleavage system, aminotransferase, structural genomics; 1.60A {Bartonella henselae}
Probab=100.00 E-value=1.3e-60 Score=501.93 Aligned_cols=330 Identities=29% Similarity=0.415 Sum_probs=287.0
Q ss_pred CCCCCCCCCCCcChHHHHHCCCEEEeeCCcccccccCCCChHHHHHHHhcCcEEEecCCceEEEEEcccHHHHHhhcccc
Q psy4854 189 PGSSPSAEQRTPLYDLHLSHGGKMVPFAGFSMPVQYGAVSITASHLHTRSKVSVFDVSHMLQTVVTGKHREEWLESICVA 268 (555)
Q Consensus 189 ~~~~~r~~r~spl~~~~~~~gA~f~~~~g~e~p~~f~~~~~~~E~~a~r~~v~l~DlS~~~~i~v~G~da~~fLq~l~t~ 268 (555)
|+++. ++|+||||++|.++||+|.+++||+||.||++ ++.+||+|||++|+|||+|||++|.|+|+||.+|||+++||
T Consensus 27 ~~~~~-~~r~tpl~~~h~~~GA~~~~~~gw~~P~~y~~-~~~~E~~avR~~~gl~DvSh~g~i~V~G~DA~~fL~~l~tn 104 (393)
T 3gir_A 27 EFETS-SLKTLPLYELHEKAGAKFGAFAGWRMPLTYPL-GVLKEHLHTRAHAGLFDISHMKLIAVEGPKAVEFLSYALPV 104 (393)
T ss_dssp ------CCEECTTHHHHHHTTCEEEEETTEEEEEECTT-CHHHHHHHHHHSEEEEECTTSEEEEEESTTHHHHHHHHSSS
T ss_pred CCCcc-ccccCcchHHHHHcCCEEEeeCCEecchhhcC-CHHHHHHHHHhCeEEEeCCCcEEEEEECCCHHHHhhhhccc
Confidence 55555 69999999999999999999999999999984 79999999999999999999999999999999999999999
Q ss_pred CCCCCCCCceEEeeeecCCcceEEEEEEEEecCCeEEEEecccchHHHHHHHHHHHhhhccCCCCEEEEEccCCCeEEEE
Q psy4854 269 DVHELDPGKGTLSLFTNEQGGIQDDLIVTKTLEDSLFLVSNASRRKVDMDLMVAAQDRFKSLGKDIHLQFLSAEERGLIA 348 (555)
Q Consensus 269 dv~~l~~G~~~yt~~ln~~G~i~~d~~v~r~~~d~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~V~i~dvs~~~~~~i~ 348 (555)
||+++++|+++||+|||++|+|++|++|+|+++|+|+|++++++.+.+++||++++. +.+|+| .+ ++++.|.
T Consensus 105 dv~~l~~G~~~yt~~ln~~G~i~dD~~V~rl~~d~~~lv~~a~~~~~~~~~L~~~~~-----~~~V~i--~~-~~~a~la 176 (393)
T 3gir_A 105 DAALLKIGQSRYSYLLNERAGILDDLILTRLAECRFMLVANAGNAQADFAELEKRAF-----GFECQV--IA-LERVLLA 176 (393)
T ss_dssp CTTTSCTTBEEEEEEECTTCCEEEEEEEEEEETTEEEEEECGGGHHHHHHHHHHHTT-----TSSCEE--EE-CCCEEEE
T ss_pred ccccCCCCcEEEEEEECCCCcEEEEEEEEEecCCEEEEEECchhHHHHHHHHHhhcc-----CCceEE--EE-CCEEEEE
Confidence 999999999999999999999999999999999999999999999999999999975 358999 44 3789999
Q ss_pred EcCCCHHHHHhhccccCCCCCcccceEeeeecCccEEEEecCccCCCeEEEEecCCcHHHHHHHHHcCCCeeecCchhhH
Q psy4854 349 VQGPLSSTILQRHTDLDLSSLYFMTSRPCTIAGIPCTLTRAGYTGEDGVEISVPGEQCTHIVEALLSDEDVKLAGLGARD 428 (555)
Q Consensus 349 v~GP~A~~vL~~l~~~dl~~l~~~~~~~~~i~g~~v~i~R~~~~ge~G~eL~~~~~~a~~l~~~L~~ag~~~~~G~~a~~ 428 (555)
|+||+|+++|++++. +++.+++++++...+ +++++|++|+||+||||++|.+++.++|++|++++.+.++|+.|+|
T Consensus 177 lqGP~A~~vL~~l~~-~l~~~~~~~~~~~~i---~~~i~R~gytGE~G~Ei~~p~~~a~~lw~~L~~a~g~~p~Gl~A~d 252 (393)
T 3gir_A 177 LQGPQAAAVLADAGL-PGNELLFMQGFEPQQ---DWFITRSGYTGEDGFEIALPIGCARALAEKLLGDSRVEWVGLAARD 252 (393)
T ss_dssp EESTTHHHHHHHTTC-CCTTCCTTBEECSST---TCEEESCCSSSSSEEEEEECHHHHHHHHHHHHTSTTEEECCHHHHH
T ss_pred EECccHHHHHHHhcC-chhhcccceeEEEEE---eEEEEeCCCCCCCeEEEEEEHHHHHHHHHHHHhcCCceeccccchh
Confidence 999999999999998 888899998876665 6899999999999999999999999999999998779999999999
Q ss_pred hhh---------ccCCCC-CCcccccccccccc---ccc-CCceeEEecc----CCcEEEEEEeec-Ccc--ceEeeccc
Q psy4854 429 SLS---------GDITLN-TPVPHGSLKLSNDR---FKS-LGKDIHLQFL----SPEERGLIAVQG-PLS--STILQRHT 487 (555)
Q Consensus 429 ~lR---------~dl~~~-~P~E~gl~~~v~~~---K~~-iG~eal~~~~----~~~lv~l~~~~g-p~a--~~v~~~~~ 487 (555)
+|| +|++++ +|+|+||+|+|+|+ |+| +|||++++++ .|++++|.++.. |+. .+|+..++
T Consensus 253 ~LRiEaG~p~~g~dl~~~~~P~EagL~~~V~~~k~~Kg~fiGqeal~r~~~~G~~rrlvgl~~~~~~~~~~G~~v~~~~g 332 (393)
T 3gir_A 253 SLRLEAGLCLHGNDITPDTTPIDAALTWAVPKNVREKAQFYGAKAFLESLQKGPSRCRVGLKPQTRQPIRAGAVLFDNEG 332 (393)
T ss_dssp HHHHHTTCCCBTTTBCTTCCTTTTTCGGGSCHHHHHHCCSTTHHHHHHHHHHCCSSEEEEEEESSSSCCCTTCEEECTTS
T ss_pred hHHHhcCcccchhhcCCCCCHHHCCchheecCCCCCCCCCcCHHHHHHHHhcCCCeEEEEEEECCCcCCCCCCEEEccCC
Confidence 999 899999 99999999999998 678 9999999876 389999998432 332 77873332
Q ss_pred ccceeeEEEEeeeeecccCeeEEEEecccc-CCceEEEEeCCcchHH
Q psy4854 488 DLDLSSLYFMTSRPCTIAGIPCTLTRAGYT-GEDGVEISVPGEQCTH 533 (555)
Q Consensus 488 ~~~~t~~~~~~~~~~~~~~i~~~~~r~~y~-ge~g~EI~i~~~~~~~ 533 (555)
. .++.+++...++...+.|.+++++.++. .+..++|++.+++.++
T Consensus 333 ~-~vG~VTS~~~sp~l~~~iaLa~v~~~~~~~G~~l~v~i~g~~~~a 378 (393)
T 3gir_A 333 N-RIGVVTSGGFGPSFDGPVAMGYVPVAWKVEGTEVFTELRGKKIAL 378 (393)
T ss_dssp C-EEEEEEEEEEETTTTEEEEEEEECGGGCSTTCEEEEEETTEEEEE
T ss_pred e-EEEEEEEEEECCCCCcEEEEEEEcHHHcCCCCEEEEEECCEEEEE
Confidence 2 3444444444555556788999999985 4567999999886654
No 3
>1vlo_A Aminomethyltransferase; NP417381, tetrahydrofolat dependent) of glycine cleavage system, structural genomics, protein structure initiative; HET: MSE; 1.70A {Escherichia coli K12} SCOP: b.44.2.1 d.250.1.1 PDB: 3a8j_A* 3a8i_A* 3a8k_A*
Probab=100.00 E-value=1.7e-59 Score=493.45 Aligned_cols=332 Identities=26% Similarity=0.355 Sum_probs=280.6
Q ss_pred ccCCCCCCCCCCCCCcChHHHHHCCCEEEeeCCcccccccCCCChHHHHHHHhcCcEEEecCCceEEEEEcccHHHHHhh
Q psy4854 185 FVFSPGSSPSAEQRTPLYDLHLSHGGKMVPFAGFSMPVQYGAVSITASHLHTRSKVSVFDVSHMLQTVVTGKHREEWLES 264 (555)
Q Consensus 185 ~p~~~~~~~r~~r~spl~~~~~~~gA~f~~~~g~e~p~~f~~~~~~~E~~a~r~~v~l~DlS~~~~i~v~G~da~~fLq~ 264 (555)
+.++..++.|++|+||||++|.++||+|.+++||+||.||+ ++.+||+|+|++|++||+|||++|.|+|+||.+|||+
T Consensus 3 ~~~~~~~~~~~~~~tpl~~~h~~~Ga~~~~~~g~~~p~~y~--~~~~E~~avr~~~gl~DlS~~g~i~v~G~DA~~fLq~ 80 (381)
T 1vlo_A 3 HHHHTDPALRAAQQTPLYEQHTLCGARMVDFHGWMMPLHYG--SQIDEHHAVRTDAGMFDVSHMTIVDLRGSRTREFLRY 80 (381)
T ss_dssp -------------CCTTHHHHHHTTCEEEEETTEEEEEESS--CHHHHHHHHHHSCEEEECTTSEEEEEESTTHHHHHHH
T ss_pred cccCCCCCCCCcccCchHHHHHHcCCEEEeECCEEcccccC--CHHHHHHHHHhCeEEEECCCcEEEEEECCCHHHHHHH
Confidence 44566788999999999999999999999999999999999 7999999999999999999999999999999999999
Q ss_pred ccccCCCCC-CCCceEEeeeecCCcceEEEEEEEEecCCeEEEEecccchHHHHHHHHHHHhhhccCCCCEEEEEccCCC
Q psy4854 265 ICVADVHEL-DPGKGTLSLFTNEQGGIQDDLIVTKTLEDSLFLVSNASRRKVDMDLMVAAQDRFKSLGKDIHLQFLSAEE 343 (555)
Q Consensus 265 l~t~dv~~l-~~G~~~yt~~ln~~G~i~~d~~v~r~~~d~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~V~i~dvs~~~ 343 (555)
++||||+++ ++|+++||+|||++|+|++|++|+|+++|+|+|+++++..+.+++||++++.. .+|+|+| | ++
T Consensus 81 l~t~dv~~l~~~g~~~yt~~ln~~G~i~~D~~v~r~~~d~~~lv~~a~~~~~~~~~L~~~~~~-----~~V~i~d-s-~~ 153 (381)
T 1vlo_A 81 LLANDVAKLTKSGKALYSGMLNASGGVIDDLIVYYFTEDFFRLVVNSATREKDLSWITQHAEP-----FGIEITV-R-DD 153 (381)
T ss_dssp HBSSCGGGCCSTTBEEEEEEECTTSCEEEEEEEEEEETTEEEEEECGGGHHHHHHHHHHHHGG-----GTCEEEE-C-TT
T ss_pred hccccccccCCCCCEEEEEEECCCCcEEEEEEEEEEeCCEEEEEECcccHHHHHHHHHHhccC-----CceEEEE-C-CC
Confidence 999999999 89999999999999999999999999999999999999999999999999863 4799999 8 56
Q ss_pred eEEEEEcCCCHHHHHhhcc----ccCCCCCcccceEeeeecCccEEEEecCccCCCeEEEEecCCcHHHHHHHHHcCCCe
Q psy4854 344 RGLIAVQGPLSSTILQRHT----DLDLSSLYFMTSRPCTIAGIPCTLTRAGYTGEDGVEISVPGEQCTHIVEALLSDEDV 419 (555)
Q Consensus 344 ~~~i~v~GP~A~~vL~~l~----~~dl~~l~~~~~~~~~i~g~~v~i~R~~~~ge~G~eL~~~~~~a~~l~~~L~~ag~~ 419 (555)
++.|.|+||+|+++|++++ +.++++++++++... + +++++|++|+||+||||++|.+++.++|++|+++| +
T Consensus 154 ~~~lalqGP~a~~~l~~l~~~~~~~~l~~~~~~~~~~~---g-~~~i~R~gytGe~G~ei~~~~~~a~~l~~~L~~~g-~ 228 (381)
T 1vlo_A 154 LSMIAVQGPNAQAKAATLFNDAQRQAVEGMKPFFGVQA---G-DLFIATTGYTGEAGYEIALPNEKAADFWRALVEAG-V 228 (381)
T ss_dssp EEEEEEESTTHHHHHHTTCCHHHHHHHTTCCSSBEEEE---T-TEEEECCCSSSSCEEEEEEEHHHHHHHHHHHHHTT-C
T ss_pred EEEEEEECccHHHHHHHhhccccCCCcccCCcceeEEe---c-cEEEEecCCCCCCEEEEEEeHHHHHHHHHHHHhcC-C
Confidence 8999999999999999998 567778898887665 5 79999999999999999999999999999999998 8
Q ss_pred eecCchhhHhhh---------ccCCCC-CCcccccccccccccc--c-CCceeEEecc-C--CcEEEEEEeec--Cc-c-
Q psy4854 420 KLAGLGARDSLS---------GDITLN-TPVPHGSLKLSNDRFK--S-LGKDIHLQFL-S--PEERGLIAVQG--PL-S- 479 (555)
Q Consensus 420 ~~~G~~a~~~lR---------~dl~~~-~P~E~gl~~~v~~~K~--~-iG~eal~~~~-~--~~lv~l~~~~g--p~-a- 479 (555)
.++|+.|+++|| +|++++ +|+|+||+|+|+|+|+ | +|||++++++ . .++++|.+ ++ ++ .
T Consensus 229 ~p~G~~a~d~LRiEaG~p~~g~d~~~~~~P~EagL~~~V~~~Kg~~cfiGqE~lar~~~~G~~rlv~l~~-~~~~~~~~g 307 (381)
T 1vlo_A 229 KPCGLGARDTLRLEAGMNLYGQEMDETISPLAANMGWTIAWEPADRDFIGREALEVQREHGTEKLVGLVM-TEKGVLRNE 307 (381)
T ss_dssp EECCHHHHHHHHHHTTCCCBTTTBCTTSCGGGTTCGGGCCCCSTTCCCTTHHHHHHHHHHCCCEEEEEEE-CSSSCCCTT
T ss_pred cccCHHHHHHHHHHcCCCcccccCCCCCChhhCCccceeECCCCCCCCcCHHHHHHHHhcCCCEEEEEEE-CCCcCCCCC
Confidence 999999999999 899999 9999999999999998 8 9999999887 1 48999998 44 32 2
Q ss_pred ceEeeccc-cc-ceeeEEEEeeeeecccCeeEEEEeccccCCceEEEEeCCcchHH
Q psy4854 480 STILQRHT-DL-DLSSLYFMTSRPCTIAGIPCTLTRAGYTGEDGVEISVPGEQCTH 533 (555)
Q Consensus 480 ~~v~~~~~-~~-~~t~~~~~~~~~~~~~~i~~~~~r~~y~ge~g~EI~i~~~~~~~ 533 (555)
.+|+.+.. .. .++.++....++.....|.+++++.+ .+..++|.+.++...+
T Consensus 308 ~~v~~~~~~g~~~vG~VtS~~~sp~lg~~iala~v~~~--~g~~l~v~~~g~~~~a 361 (381)
T 1vlo_A 308 LPVRFTDAQGNQHEGIITSGTFSPTLGYSIALARVPEG--IGETAIVQIRNREMPV 361 (381)
T ss_dssp CEEEEECTTCCEEEEEEEEEEEETTTTEEEEEEEECTT--CCSEEEEEETTEEEEE
T ss_pred CEEEECCCCCCeeEEEEEEeeeCCCCCceEEEEEEEcC--CCCEEEEEECCEEEEE
Confidence 78886520 12 33444444444444446788888887 4557899988875543
No 4
>1wsr_A Aminomethyltransferase; glycine-cleavage sytem; 2.00A {Homo sapiens} PDB: 1wsv_A*
Probab=100.00 E-value=8.2e-59 Score=488.32 Aligned_cols=335 Identities=43% Similarity=0.654 Sum_probs=292.3
Q ss_pred CCCCCCCcChHHHHHCCCEEEeeCCcccccccCCCChHHHHHHHhcCcEEEecCCceEEEEEcccHHHHHhhccccCCCC
Q psy4854 193 PSAEQRTPLYDLHLSHGGKMVPFAGFSMPVQYGAVSITASHLHTRSKVSVFDVSHMLQTVVTGKHREEWLESICVADVHE 272 (555)
Q Consensus 193 ~r~~r~spl~~~~~~~gA~f~~~~g~e~p~~f~~~~~~~E~~a~r~~v~l~DlS~~~~i~v~G~da~~fLq~l~t~dv~~ 272 (555)
..++|+||||++|.++||+|.+++||+||.||++ +..+||+|+|++|++||+|||++|.|+|+||.+|||+++||||++
T Consensus 2 ~~~~~~tpl~~~~~~~Ga~~~~~~g~~~p~~y~~-~~~~E~~a~r~~~gl~Dls~~g~i~v~G~da~~fLq~l~t~dv~~ 80 (375)
T 1wsr_A 2 QEVLRRTPLYDFHLAHGGKMVAFAGWSLPVQYRD-SHTDSHLHTRQHCSLFDVSHMLQTKILGSDRVKLMESLVVGDIAE 80 (375)
T ss_dssp --CCBCCTTHHHHHHTTCEEEEETTEEEEEECSS-CHHHHHHHHHHSEEEEECTTSEEEEEESTTHHHHHHHHBSSCCTT
T ss_pred CCccccCccHHHHHHCCCEEEEECCEEechhhCC-CHHHHHHHHHhCcEEEECCceEEEEEECCCHHHHHHHhcccccCc
Confidence 3578999999999999999999999999999984 689999999999999999999999999999999999999999999
Q ss_pred CCCCceEEeeeecCCcceEEEEEEEEecCCeEEEEecccchHHHHHHHHHHHhhhccCCCCEEEEEccCCCeEEEEEcCC
Q psy4854 273 LDPGKGTLSLFTNEQGGIQDDLIVTKTLEDSLFLVSNASRRKVDMDLMVAAQDRFKSLGKDIHLQFLSAEERGLIAVQGP 352 (555)
Q Consensus 273 l~~G~~~yt~~ln~~G~i~~d~~v~r~~~d~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~V~i~dvs~~~~~~i~v~GP 352 (555)
+++|+++||+|||++|+|++|++|+|+++|+|+|+++++..+.+++||++++..|...+.+|+|+|+ +++.|.|+||
T Consensus 81 l~~g~~~y~~~ln~~G~i~~D~~v~r~~~d~~~lv~~a~~~~~~~~~L~~~~~~~~~~~~~V~i~d~---~~~~lal~GP 157 (375)
T 1wsr_A 81 LRPNQGTLSLFTNEAGGILDDLIVTNTSEGHLYVVSNAGCWEKDLALMQDKVRELQNQGRDVGLEVL---DNALLALQGP 157 (375)
T ss_dssp CCTTEEEEEEEECTTCCEEEEEEEEECTTSSEEEEECGGGHHHHHHHHHHHHHHHHHTTCCCEEEEC---CCEEEEEEST
T ss_pred CCCCCEEEEEEECCCCeEEEEEEEEEEcCCEEEEEeCCccHHHHHHHHHHhhhhhcCCCCeEEEEEC---CEEEEEEECc
Confidence 9999999999999999999999999999999999999999999999999998643222468999987 4789999999
Q ss_pred CHHHHHhhccccCCCCCcccceEeeeecCcc-EEEEecCccCCCeEEEEecCCcHHHHHHHHHcCCCeeecCchhhHhhh
Q psy4854 353 LSSTILQRHTDLDLSSLYFMTSRPCTIAGIP-CTLTRAGYTGEDGVEISVPGEQCTHIVEALLSDEDVKLAGLGARDSLS 431 (555)
Q Consensus 353 ~A~~vL~~l~~~dl~~l~~~~~~~~~i~g~~-v~i~R~~~~ge~G~eL~~~~~~a~~l~~~L~~ag~~~~~G~~a~~~lR 431 (555)
+|+++|++++..+++.+|++++....+++.+ ++++|++|+||+||||++|.+++.++|+.|+++|++.++|+.|+++||
T Consensus 158 ~a~~vL~~l~~~dl~~l~~~~~~~~~~~g~~~~~i~R~g~tGe~G~el~~~~~~a~~l~~~L~~ag~~~p~G~~a~d~lR 237 (375)
T 1wsr_A 158 TAAQVLQAGVADDLRKLPFMTSAVMEVFGVSGCRVTRCGYTGEDGVEISVPVAGAVHLATAILKNPEVKLAGLAARDSLR 237 (375)
T ss_dssp THHHHHHTTCSSCGGGCCTTBEEEEEETTEEEEEEESCCSSSSSEEEEEECHHHHHHHHHHHHTSTTEEECCHHHHHHHH
T ss_pred CHHHHHHhhcCcchhhCCccceEEEEECCcceEEEEeCccCCCCeEEEEeeHHHHHHHHHHHHhcCCeEeCCHHHHHHHH
Confidence 9999999999888888999998888999988 999999999999999999999999999999999988999999999999
Q ss_pred ---------ccCCCC-CCcccccccccccc---ccc-CCceeEEecc----CCcEEEEEEeec-Ccc--ceEeecccccc
Q psy4854 432 ---------GDITLN-TPVPHGSLKLSNDR---FKS-LGKDIHLQFL----SPEERGLIAVQG-PLS--STILQRHTDLD 490 (555)
Q Consensus 432 ---------~dl~~~-~P~E~gl~~~v~~~---K~~-iG~eal~~~~----~~~lv~l~~~~g-p~a--~~v~~~~~~~~ 490 (555)
+|++++ +|+|+||+|+|+|+ |+| +|||++++++ .|++++|.. ++ |+. .+|+..++. .
T Consensus 238 ieaG~p~~g~d~~~~~~P~Eagl~~~V~~~~~~Kg~fiGqe~lar~~~~g~~rrlv~l~~-~~~~~~~g~~v~~~~g~-~ 315 (375)
T 1wsr_A 238 LEAGLCLYGNDIDEHTTPVEGSLSWTLGKRRRAAMDFPGAKVIVPQLKGRVQRRRVGLMC-EGAPMRAHSPILNMEGT-K 315 (375)
T ss_dssp HHTTCCCBTTTBCTTCCTTTTTCGGGSCHHHHHHTCSTTHHHHHHHHTTCCSCEEEEEEE-SSSCCCTTCEEECTTSC-E
T ss_pred HhCCcCCcCccCCCCCChhHCCchheecCCCCCCCCCcCHHHHHHHHhcCCCEEEEEEEc-CCccCCCCCEEEcCCCc-E
Confidence 899999 99999999999999 788 9999998876 288999976 44 332 778732222 3
Q ss_pred eeeEEEEeeeeecccCeeEEEEecccc-CCceEEEEeCCcchHH
Q psy4854 491 LSSLYFMTSRPCTIAGIPCTLTRAGYT-GEDGVEISVPGEQCTH 533 (555)
Q Consensus 491 ~t~~~~~~~~~~~~~~i~~~~~r~~y~-ge~g~EI~i~~~~~~~ 533 (555)
++.++....++.....+.+++++.++. .+..++|.+.++...+
T Consensus 316 vG~vtS~~~sp~lg~~iala~v~~~~~~~g~~~~v~~~g~~~~a 359 (375)
T 1wsr_A 316 IGTVTSGCPSPSLKKNVAMGYVPCEYSRPGTMLLVEVRRKQQMA 359 (375)
T ss_dssp EEEEEEEEEETTTTEEEEEEEECGGGCSTTCEEEEEETTEEEEE
T ss_pred EEEEecceecCcCCceEEEEEEChHHcCCCCEEEEEECCEEEEE
Confidence 444444444454444688899999885 3556889888875543
No 5
>1yx2_A Aminomethyltransferase; glycine cleavage system T protein, alpha-beta, beta-barrel, structural genomics, PSI, protein structure initiative; 2.08A {Bacillus subtilis}
Probab=100.00 E-value=6.6e-59 Score=487.54 Aligned_cols=330 Identities=29% Similarity=0.436 Sum_probs=289.9
Q ss_pred CCCCCCCCcChHHHHHCCCEEEeeCCcccccccCCCChHHHHHHHhcCcEEEecCCceEEEEEcccHHHHHhhccccCCC
Q psy4854 192 SPSAEQRTPLYDLHLSHGGKMVPFAGFSMPVQYGAVSITASHLHTRSKVSVFDVSHMLQTVVTGKHREEWLESICVADVH 271 (555)
Q Consensus 192 ~~r~~r~spl~~~~~~~gA~f~~~~g~e~p~~f~~~~~~~E~~a~r~~v~l~DlS~~~~i~v~G~da~~fLq~l~t~dv~ 271 (555)
+++++|+||||++|.++||+|.+++||+||.||+ ++.+||+|+|++|++||+|||++|.|+|+||.+|||+++||||+
T Consensus 1 ~~~~~~~tpl~~~~~~~ga~~~~~~g~~~p~~y~--~~~~E~~a~r~~~gl~dls~~~~i~v~G~da~~fLq~l~t~dv~ 78 (365)
T 1yx2_A 1 SNAMLKRTPLFDLYKEYGGKTIDFGGWELPVQFS--SIKKEHEAVRTAAGLFDVSHMGEVEVSGNDSLSFLQRLMTNDVS 78 (365)
T ss_dssp ----CBCCTTGGGHHHHTCEEEEETTEEEEEESS--CHHHHHHHHHHSEEEEECTTSEEEEEESTTHHHHHHHHBSSCGG
T ss_pred CCCccccCccHHHHHHcCCEEEeECCEEhhhhcC--CHHHHHHHHHhCcEEEECCCeEEEEEECCCHHHHHHHhcccccc
Confidence 3688999999999999999999999999999998 79999999999999999999999999999999999999999999
Q ss_pred CCCCCceEEeeeecCCcceEEEEEEEEecCCeEEEEecccchHHHHHHHHHHHhhhccCCCCEEEEEccCCCeEEEEEcC
Q psy4854 272 ELDPGKGTLSLFTNEQGGIQDDLIVTKTLEDSLFLVSNASRRKVDMDLMVAAQDRFKSLGKDIHLQFLSAEERGLIAVQG 351 (555)
Q Consensus 272 ~l~~G~~~yt~~ln~~G~i~~d~~v~r~~~d~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~V~i~dvs~~~~~~i~v~G 351 (555)
+|++|+++||+|||++|+|++|++|+|+++++|+|+++++..+.+++||++++. .+|+|+|+| ++++.+.|+|
T Consensus 79 ~l~~g~~~y~~~ln~~G~i~~d~~v~r~~~d~~ll~~~a~~~~~~~~~L~~~~~------~~V~i~d~s-~~~~~lal~G 151 (365)
T 1yx2_A 79 ALTPGRAQYTAMCYPDGGTVDDLLIYQKGENRYLLVINASNIDKDLAWMKEHAA------GDVQIDNQS-DQIALLAVQG 151 (365)
T ss_dssp GCCTTBEEEEEEECTTSCEEEEEEEEEEETTEEEEEECGGGHHHHHHHHHHTCC------SSCEEEECT-TTEEEEEEES
T ss_pred cCCCCCEEEEEEECCCCeEEEEEEEEEEeCCEEEEEECcccHHHHHHHHHhhcc------CCeEEEECc-CCEEEEEEEC
Confidence 999999999999999999999999999998999999999999999999998763 479999998 5689999999
Q ss_pred CCHHHHHhhccccCCCCCcccceE-eeeecCccEEEEecCccCCCeEEEEecCCcHHHHHHHHHcCCC---eeecCchhh
Q psy4854 352 PLSSTILQRHTDLDLSSLYFMTSR-PCTIAGIPCTLTRAGYTGEDGVEISVPGEQCTHIVEALLSDED---VKLAGLGAR 427 (555)
Q Consensus 352 P~A~~vL~~l~~~dl~~l~~~~~~-~~~i~g~~v~i~R~~~~ge~G~eL~~~~~~a~~l~~~L~~ag~---~~~~G~~a~ 427 (555)
|+|+++|++++..+++.++++++. ...+++.++++.|++|+||+||||++|.+++..+|+.|+++|+ +.++|+.|+
T Consensus 152 p~a~~~L~~l~~~dl~~~~~~~~~~~~~~~g~~~~i~R~g~tge~G~el~~~~~~a~~l~~~L~~ag~~~g~~~~g~~a~ 231 (365)
T 1yx2_A 152 PKAEAILKNLTDADVSALKPFAFIDEADISGRKALISRTGYTGEDGYEIYCRSDDAMHIWKKIIDAGDAYGLIPCGLGAR 231 (365)
T ss_dssp TTHHHHHHTTBSSCGGGCCTTBEEEEEEETTEEEEEESCCSSSSSEEEEEEEGGGHHHHHHHHHHHHGGGTEEEECHHHH
T ss_pred cCHHHHHHHhhCCChhhCCcceeEEEEEECCeEEEEEeCcccCCCEEEEEEcHHHHHHHHHHHHhcchhcCceeCCHHHH
Confidence 999999999998888889999888 8888888899999999999999999999999999999999885 889999999
Q ss_pred Hhhh---------ccCCCC-CCccccccccccccccc--CCceeEEecc----CCcEEEEEEeec--Ccc--ceEeeccc
Q psy4854 428 DSLS---------GDITLN-TPVPHGSLKLSNDRFKS--LGKDIHLQFL----SPEERGLIAVQG--PLS--STILQRHT 487 (555)
Q Consensus 428 ~~lR---------~dl~~~-~P~E~gl~~~v~~~K~~--iG~eal~~~~----~~~lv~l~~~~g--p~a--~~v~~~~~ 487 (555)
++|| +|++++ +|+|+||+|+|+|+|+| +|||++++++ .|++++|.+ ++ |+. .+|+.++.
T Consensus 232 ~~lRieaG~p~~g~d~~~~~~P~e~~l~~~V~~~Kgc~yiGqe~lar~~~~g~~rrlv~l~~-~~~~~~~~g~~v~~~g~ 310 (365)
T 1yx2_A 232 DTLRFEANIPLYGQELTRDITPIEAGIGFAVKHKKESDFFGKSVLSEQKENGAKRKLVGLEM-IEKGIPRHGYEVFQNGK 310 (365)
T ss_dssp HHHHHHTTCCCBTTTBSTTCCTTTTTCGGGCCTTCSSCCTTHHHHHHHHHHCCSEEEEEEEE-SSSCCCCTTCEEEETTE
T ss_pred HHhHHhcCCCcCccccCCCCCHHHCCccceecCCCCCCCcCHHHHHHHHhcCCCeEEEEEEE-CCCcCCCCCCEEEECCe
Confidence 9999 899999 99999999999999985 9999999887 278999998 44 332 77876433
Q ss_pred ccceeeEEEEeeeeecccCeeEEEEecccc-CCceEEEEeCCcchHH
Q psy4854 488 DLDLSSLYFMTSRPCTIAGIPCTLTRAGYT-GEDGVEISVPGEQCTH 533 (555)
Q Consensus 488 ~~~~t~~~~~~~~~~~~~~i~~~~~r~~y~-ge~g~EI~i~~~~~~~ 533 (555)
.++.++....++.....+.+++++.++. .+..++|.+.++...+
T Consensus 311 --~vG~vtS~~~sp~~~~~iala~v~~~~~~~g~~~~v~~~g~~~~a 355 (365)
T 1yx2_A 311 --SVGKVTTGTQSPTLGKNVGLALIDSETSEIGTVVDVEIRKKLVKA 355 (365)
T ss_dssp --EEEEEEEEEEETTTTEEEEEEEEEGGGCSTTCEEEEEETTEEEEE
T ss_pred --eEEEEEeccccCCCCceEEEEEEChHHcCCCCEEEEEECCEEEEE
Confidence 3333443333444444688889998874 3566889888875543
No 6
>3tfi_A GCVT-like aminomethyltransferase protein; demethylase, THF; 1.60A {Candidatus pelagibacter ubique} PDB: 3tfh_A 3tfj_A*
Probab=100.00 E-value=1.2e-58 Score=484.95 Aligned_cols=329 Identities=17% Similarity=0.215 Sum_probs=284.0
Q ss_pred CCCCCCCCCCCcChHHHHHCCCE-EEeeCCcccccccCCCChHHHHHHHhcCcEEEecCCceEEEEEcccHHHHHhhccc
Q psy4854 189 PGSSPSAEQRTPLYDLHLSHGGK-MVPFAGFSMPVQYGAVSITASHLHTRSKVSVFDVSHMLQTVVTGKHREEWLESICV 267 (555)
Q Consensus 189 ~~~~~r~~r~spl~~~~~~~gA~-f~~~~g~e~p~~f~~~~~~~E~~a~r~~v~l~DlS~~~~i~v~G~da~~fLq~l~t 267 (555)
+.+++|++|+||||++|.++||+ |..++||++|.||+ ++.+||+|||++|++||+|||++|.|+|+||.+|||+++|
T Consensus 5 ~~~~~r~~~~tpl~~~h~~~Ga~~~~~~~gw~~P~~y~--~~~~E~~avR~~~glfDvSh~g~i~v~G~DA~~fL~~l~t 82 (369)
T 3tfi_A 5 SIAKSRRLRSTPYTSRIEKQGVTAYTIYNHMLLPAAFG--SIEDSYKHLKEHVQIWDVAAERQVEISGKDSAELVQLMTC 82 (369)
T ss_dssp EECCBTTBBCCTTHHHHTTTTCCEEEEETTEEEEEESS--CHHHHHHHHHHSCEEEECTTSCEEEEESTTHHHHHHHHBS
T ss_pred ccccccccCCCccHHHHHHcCCeEEeccCCEEcccccC--CHHHHHHHHHcCeEEEeCCCCEEEEEECCCHHHHHhhhcc
Confidence 45689999999999999999998 79999999999999 7999999999999999999999999999999999999999
Q ss_pred cCCCCCCCCceEEeeeecCCcceEEEEEEEEecCCeEEEEecccchHHHHHHHHHHHhhhccCCCCEEEEEccCCCeEEE
Q psy4854 268 ADVHELDPGKGTLSLFTNEQGGIQDDLIVTKTLEDSLFLVSNASRRKVDMDLMVAAQDRFKSLGKDIHLQFLSAEERGLI 347 (555)
Q Consensus 268 ~dv~~l~~G~~~yt~~ln~~G~i~~d~~v~r~~~d~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~V~i~dvs~~~~~~i 347 (555)
|||++|++|+++||+|||++|+|++|++|+|+++|+|+|+++.. .+..||+++...+ +.+|++.+ . +++.|
T Consensus 83 ~dv~~L~~G~~~yt~~ln~~G~i~dD~~v~r~~ed~~~l~~~~~---~~~~~l~~~~~~~---~~~V~i~~-~--~~a~l 153 (369)
T 3tfi_A 83 RDLSKSKIGRCYYCPIIDENGNLVNDPVVLKLDENKWWISIADS---DVIFFAKGLASGH---KFDVKIVE-P--VVDIM 153 (369)
T ss_dssp SCCTTCCTTBEEECCEECTTSCEEECCEEEEEETTEEEEECCSS---CHHHHHHHHHHHH---TCCCEEEC-C--SCEEE
T ss_pred cccccCCCCcEEEEEEECCCCCEEEEEEEEEecCCEEEEEECcH---HHHHHHHHhhhhc---CCeEEEEE-C--CEEEE
Confidence 99999999999999999999999999999999999999987654 3568998886422 46899986 4 78999
Q ss_pred EEcCCCHHHHHhhccccCCCCCcccceEeeeecCccEEEEecCccCCCeEEEEecC-CcHHHHHHHHHcCCC---eeecC
Q psy4854 348 AVQGPLSSTILQRHTDLDLSSLYFMTSRPCTIAGIPCTLTRAGYTGEDGVEISVPG-EQCTHIVEALLSDED---VKLAG 423 (555)
Q Consensus 348 ~v~GP~A~~vL~~l~~~dl~~l~~~~~~~~~i~g~~v~i~R~~~~ge~G~eL~~~~-~~a~~l~~~L~~ag~---~~~~G 423 (555)
.|+||+|+++|+++++.+++.+|++++....+++.+++++|++|+||+||||++|. +++.++|++|+++|+ +.++|
T Consensus 154 alqGP~A~~~L~~l~~~~l~~l~~~~~~~~~i~g~~~~i~R~gytGE~G~Ei~~~~~~~a~~lw~~L~~ag~~~g~~~~~ 233 (369)
T 3tfi_A 154 AIQGPKSFALMEKVFGKKITELKFFGFDYFDFEGTKHLIARSGWSKQGGYEVYVENTQSGQKLYDHLFEVGKEFNVGPGC 233 (369)
T ss_dssp EEESTTHHHHHHHHHCGGGGGCCTTBEEEEEETTEEEEEESCCSSSSCEEEEEECSHHHHHHHHHHHHHHTGGGTCEEEC
T ss_pred EEECccHHHHHHhhcCCchhhCCCceEEEEEECCeEEEEEeCccCCCCeEEEEEecHHHHHHHHHHHHhhCcccCceecc
Confidence 99999999999999988888899999999999999999999999999999999999 999999999999885 55666
Q ss_pred chhhHhhh---------ccCCCC-CCcccccccccccccc-c-CCceeEEecc----CCcEEEEEEeecC---c--c-ce
Q psy4854 424 LGARDSLS---------GDITLN-TPVPHGSLKLSNDRFK-S-LGKDIHLQFL----SPEERGLIAVQGP---L--S-ST 481 (555)
Q Consensus 424 ~~a~~~lR---------~dl~~~-~P~E~gl~~~v~~~K~-~-iG~eal~~~~----~~~lv~l~~~~gp---~--a-~~ 481 (555)
.. ++|| +|++++ +|+|+||+|+|+|+|+ | +|||++++++ .|++++|.+ +|+ . . .+
T Consensus 234 ~~--~~lRlEaG~~~~g~d~~~~~~P~Eagl~~~V~~~Kg~~fiGqeal~r~~~~G~~rrlvgl~~-~~~~~~~~~~g~~ 310 (369)
T 3tfi_A 234 PN--LIERIESALLSYGNDFDNNDNPFECGFDQYVSLDSDINFLGKEKLKEIKLKGPQKKLRGVKI-DIKEISLTGSKNI 310 (369)
T ss_dssp CC--HHHHHHTTCCCBTTTBCTTCCGGGTTCGGGCCCSSSCCCTTHHHHHHHHHHCCSEEEEEEEE-SSSCCCCCSCEEE
T ss_pred ch--hhHHHhcCCCCccccCCCCCChHHCCchhhccCCCCCCCcCHHHHHHHHhcCCCeEEEEEEE-CCCCCCCcCCCCE
Confidence 53 2466 899999 9999999999999997 7 9999999886 389999998 553 1 1 46
Q ss_pred EeecccccceeeEEEEeeeeecccCeeEEEEecccc-CCceEEEEeCCcchHH
Q psy4854 482 ILQRHTDLDLSSLYFMTSRPCTIAGIPCTLTRAGYT-GEDGVEISVPGEQCTH 533 (555)
Q Consensus 482 v~~~~~~~~~t~~~~~~~~~~~~~~i~~~~~r~~y~-ge~g~EI~i~~~~~~~ 533 (555)
|+.++. .++.+++...++....+|.+++++.++. .+..++|.+.++..++
T Consensus 311 v~~~g~--~vG~VTS~~~sp~lg~~iala~v~~~~~~~G~~l~v~i~g~~~~a 361 (369)
T 3tfi_A 311 YDENNN--VIGELRSACYSPHFQKVIGIAMIKKSHWEASQGFKIQINDNTING 361 (369)
T ss_dssp ECTTCC--EEEEEEEEEEETTTTEEEEEEEEEGGGCSTTCEEEEEETTEEEEE
T ss_pred EEeCCe--EEEEEEeeeECCCCCceEEEEEECHHHcCCCCEEEEEECCEEEEE
Confidence 765433 3444444444555555788999999985 4678999999886553
No 7
>1wos_A Aminomethyltransferase; T-protein; 1.84A {Thermotoga maritima} SCOP: b.44.2.1 d.250.1.1 PDB: 1woo_A* 1wop_A* 1wor_A
Probab=100.00 E-value=5.4e-58 Score=480.41 Aligned_cols=326 Identities=29% Similarity=0.429 Sum_probs=288.1
Q ss_pred CCCCcChHHHHHCCCEEEeeCCcccccccCCCChHHHHHHHhcCcEEEecCCceEEEEEcccHHHHHhhccccCCCCCCC
Q psy4854 196 EQRTPLYDLHLSHGGKMVPFAGFSMPVQYGAVSITASHLHTRSKVSVFDVSHMLQTVVTGKHREEWLESICVADVHELDP 275 (555)
Q Consensus 196 ~r~spl~~~~~~~gA~f~~~~g~e~p~~f~~~~~~~E~~a~r~~v~l~DlS~~~~i~v~G~da~~fLq~l~t~dv~~l~~ 275 (555)
+|+||||++|.++||+|.+++||+||.||+ ++.+||+|+|++|++||+|||++|.|+|+||.+|||+++||||++|++
T Consensus 1 ~~~tpl~~~~~~~ga~~~~~~g~~~p~~y~--~~~~E~~a~r~~~gl~dls~~~~i~v~G~da~~fL~~l~t~dv~~l~~ 78 (364)
T 1wos_A 1 MKRTPLFEKHVELGAKMVDFAGWEMPLYYT--SIFEEVMAVRKSVGMFDVSHMGEFLVKGPEAVSFIDFLITNDFSSLPD 78 (364)
T ss_dssp CBCCTTHHHHHHTTCEEEEETTEEEEEESS--CHHHHHHHHHHSCEEEECTTSEEEEEESTTHHHHHHHHBSSCCTTCCT
T ss_pred CCCCccHHHHHHCCCEEEeECCEEhhhhhC--CHHHHHHHHHhCeEEEECCCcEEEEEECCCHHHHHHHhcccccccCCC
Confidence 589999999999999999999999999999 799999999999999999999999999999999999999999999999
Q ss_pred CceEEeeeecCCcceEEEEEEEEecCCeEEEEecccchHHHHHHHHHHHhhhccCCCCEEEEEccCCCeEEEEEcCCCHH
Q psy4854 276 GKGTLSLFTNEQGGIQDDLIVTKTLEDSLFLVSNASRRKVDMDLMVAAQDRFKSLGKDIHLQFLSAEERGLIAVQGPLSS 355 (555)
Q Consensus 276 G~~~yt~~ln~~G~i~~d~~v~r~~~d~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~V~i~dvs~~~~~~i~v~GP~A~ 355 (555)
|+++||+|||++|+|++|++|+|+++|+|+|+++++..+.+++||++++. +.+|+|+|+| ++++.+.|+||+|+
T Consensus 79 g~~~yt~~ln~~G~i~~d~~v~r~~~d~~ll~~~a~~~~~~~~~L~~~~~-----~~~V~i~d~s-~~~~~l~l~Gp~a~ 152 (364)
T 1wos_A 79 GKAIYSVMCNENGGIIDDLVVYKVSPDEALMVVNAANIEKDFNWIKSHSK-----NFDVEVSNIS-DTTALIAFQGPKAQ 152 (364)
T ss_dssp TEEEEEEEECTTSCEEEEEEEEEEETTEEEEEECGGGHHHHHHHHHTTCT-----TSSCEEEECG-GGEEEEEEESTTHH
T ss_pred CCEEEEEEECCCCeEEEEEEEEEEeCCEEEEEECcccHHHHHHHHHHhcc-----CCCEEEEECc-CCEEEEEEECcCHH
Confidence 99999999999999999999999998999999999999999999999875 3589999998 46899999999999
Q ss_pred HHHhhccccCCCCCcccceEeeeecCccEEEEecCccCCCeEEEEecCCcHHHHHHHHHcCCC---eeecCchhhHhhh-
Q psy4854 356 TILQRHTDLDLSSLYFMTSRPCTIAGIPCTLTRAGYTGEDGVEISVPGEQCTHIVEALLSDED---VKLAGLGARDSLS- 431 (555)
Q Consensus 356 ~vL~~l~~~dl~~l~~~~~~~~~i~g~~v~i~R~~~~ge~G~eL~~~~~~a~~l~~~L~~ag~---~~~~G~~a~~~lR- 431 (555)
++|++++..|++.++++++....+++.++++.|++|+||+||||++|.+++.++|+.|+++|+ +.++|+.|+++||
T Consensus 153 ~~L~~l~~~dl~~l~~~~~~~~~~~g~~~~i~R~g~tge~G~ei~~~~~~a~~l~~~L~~ag~~~g~~~~g~~a~~~lRi 232 (364)
T 1wos_A 153 ETLQELVEDGLEEIAYYSFRKSIVAGVETLVSRTGYTGEDGFELMLEAKNAPKVWDALMNLLRKIDGRPAGLGARDVCRL 232 (364)
T ss_dssp HHHGGGBSSCSTTSCTTBEEEEEETTEEEEEESCCSSSSSEEEEEEEGGGHHHHHHHHHHHHHHHTCEECCHHHHHHHHH
T ss_pred HHHHHhhCCCccccCccceEEEEECCeEEEEEecCCCCCCeEEEEEeHHHHHHHHHHHHhcchhcCceeCCHHHHhhhhH
Confidence 999999988888899999888899998999999999999999999999999999999999875 7899999999999
Q ss_pred --------ccCCCC-CCcccccccccccccccCCceeEEecc---CCcEEEEEEeec-Ccc--ceEeecccccceeeEEE
Q psy4854 432 --------GDITLN-TPVPHGSLKLSNDRFKSLGKDIHLQFL---SPEERGLIAVQG-PLS--STILQRHTDLDLSSLYF 496 (555)
Q Consensus 432 --------~dl~~~-~P~E~gl~~~v~~~K~~iG~eal~~~~---~~~lv~l~~~~g-p~a--~~v~~~~~~~~~t~~~~ 496 (555)
+|++++ +|+|+||+|.|+|+|+++|||++++++ .|++++|.+... |+. .+|+.++. .++.++.
T Consensus 233 e~G~p~~g~d~~~~~~P~e~~l~~~V~~~KgyiGqe~lar~~~~~~rrlv~l~~~~~~~~~~g~~v~~~g~--~vG~vtS 310 (364)
T 1wos_A 233 EATYLLYGQDMDENTNPFEVGLSWVVKLNKDFVGKEALLKAKEKVERKLVALELSGKRIARKGYEVLKNGE--RVGEITS 310 (364)
T ss_dssp HTTCCCBTTTBCTTSCGGGGTCGGGCCTTSCCTTHHHHHHHHHTCCEEEEEEEESSSCCCCTTCEEEETTE--EEEEEEE
T ss_pred hcCCcCcccccCCCCCHHHCCcccccCCCCCCcCHHHHHHHHhccCeEEEEEEECCCcCCCCCCEEEECCe--EEEEEEe
Confidence 899999 999999999999999999999998876 278999998422 332 78886433 3333333
Q ss_pred EeeeeecccCeeEEEEeccccC-CceEEEEeCC-cchH
Q psy4854 497 MTSRPCTIAGIPCTLTRAGYTG-EDGVEISVPG-EQCT 532 (555)
Q Consensus 497 ~~~~~~~~~~i~~~~~r~~y~g-e~g~EI~i~~-~~~~ 532 (555)
...++.....+.+++++.+ .. +..++|.+.+ +..+
T Consensus 311 ~~~sp~~g~~iala~v~~~-~~~g~~l~v~~~~~~~~~ 347 (364)
T 1wos_A 311 GNFSPTLGKSIALALVSKS-VKIGDQLGVVFPGGKLVE 347 (364)
T ss_dssp EEEETTTTEEEEEEEEETT-CCTTCEEEEEETTTEEEE
T ss_pred ceecCcCCceEEEEEEccc-cCCCCEEEEEeCCCEEEE
Confidence 3334443346788888887 43 4468888887 5443
No 8
>1v5v_A Aminomethyltransferase; glycine-cleavage sytem, structural riken structural genomics/proteomics initiative, RSGI; 1.50A {Pyrococcus horikoshii} SCOP: b.44.2.1 d.250.1.1
Probab=100.00 E-value=7.5e-57 Score=476.82 Aligned_cols=331 Identities=24% Similarity=0.392 Sum_probs=291.9
Q ss_pred CCCCCCcChHHHHHCCCEEEeeCCcccccccCCCChHHHHHHHhcCcEEEecCCceEEEEEcccHHHHHhhccccCCCCC
Q psy4854 194 SAEQRTPLYDLHLSHGGKMVPFAGFSMPVQYGAVSITASHLHTRSKVSVFDVSHMLQTVVTGKHREEWLESICVADVHEL 273 (555)
Q Consensus 194 r~~r~spl~~~~~~~gA~f~~~~g~e~p~~f~~~~~~~E~~a~r~~v~l~DlS~~~~i~v~G~da~~fLq~l~t~dv~~l 273 (555)
+++|+||||++|.++||+|.+++||++|.||+ ++.+||+|+|++|+++|+|++++|.|+|+||.+|||+++||||+++
T Consensus 3 ~~~~~tpl~~~~~~~ga~~~~~~g~~~p~~y~--~~~~E~~a~r~~~gl~dls~~~~i~v~G~Da~~fLq~l~t~dv~~l 80 (401)
T 1v5v_A 3 QMVKRVHIFDWHKEHARKIEEFAGWEMPIWYS--SIKEEHLAVRNAVGIFDVSHMGEIVFRGKDALKFLQYVTTNDISKP 80 (401)
T ss_dssp CCCBCCTTHHHHHHHCSEEEEETTEEEEEESS--CHHHHHHHHHHSCEEEECTTSEEEEEESTTHHHHHHHHSSSCTTSS
T ss_pred CccccCchHHHHHHcCCEEEEECCEEechhcC--CHHHHHHHHHhCEEEEECCCcEEEEEECCCHHHHHHHhhccccCcC
Confidence 57899999999999999999999999999999 7999999999999999999999999999999999999999999999
Q ss_pred CCCceEEeeeecCCcceEEEEEEEEecCCeEEEEecccchHHHHHHH----HHHHhhhccCCCCEEEEEccCCCeEEEEE
Q psy4854 274 DPGKGTLSLFTNEQGGIQDDLIVTKTLEDSLFLVSNASRRKVDMDLM----VAAQDRFKSLGKDIHLQFLSAEERGLIAV 349 (555)
Q Consensus 274 ~~G~~~yt~~ln~~G~i~~d~~v~r~~~d~~~l~~~~~~~~~~~~~l----~~~~~~~~~~~~~V~i~dvs~~~~~~i~v 349 (555)
++|+++||+|||++|+|++|++|+|+++++|+|+++++..+.+++|| ++++.. .+.+|+|.|+| ++++.+.|
T Consensus 81 ~~g~~~yt~~ln~~G~i~~D~~v~r~~~d~~ll~~~a~~~~~~~~~L~~~~~~~~~~---~~~~V~i~d~s-~~~~~lal 156 (401)
T 1v5v_A 81 PAISGTYTLVLNERGAIKDETLVFNMGNNEYLMICDSDAFEKLYAWFTYLKRTIEQF---TKLDLEIELKT-YDIAMFAV 156 (401)
T ss_dssp CSSEEEEEEEECTTSCEEEEEEEEEEETTEEEEEECTTTHHHHHHHHHHHHHHHHTT---SCCCCEEEECT-TTEEEEEE
T ss_pred CCCCEEEEEEECCCCcEEEEEEEEEecCCEEEEEECcccHHHHHHHHHHHHHhhhcc---CCCcEEEEECc-CCEEEEEE
Confidence 99999999999999999999999999999999999999999999999 777511 14689999998 46899999
Q ss_pred cCCCHHHHHhhccccCCCCCcccceEeeeecCccEEEEecCccCCCeEEEEec--------------CCcHHHHHHHHHc
Q psy4854 350 QGPLSSTILQRHTDLDLSSLYFMTSRPCTIAGIPCTLTRAGYTGEDGVEISVP--------------GEQCTHIVEALLS 415 (555)
Q Consensus 350 ~GP~A~~vL~~l~~~dl~~l~~~~~~~~~i~g~~v~i~R~~~~ge~G~eL~~~--------------~~~a~~l~~~L~~ 415 (555)
+||+|+++|++++..|++.+|++++....+++.+++++|++|+||+||||+++ .+.+.++|+.|++
T Consensus 157 ~GP~a~~vL~~l~~~dl~~~~~~~~~~~~~~g~~~~i~R~g~tge~G~ei~~~~~~~~~~~~~~~~~~~~a~~l~~~L~~ 236 (401)
T 1v5v_A 157 QGPKARDLAKDLFGIDINEMWWFQARWVELDGIKMLLSRSGYTGENGFEVYIEDANPYHPDESKRGEPEKALHVWERILE 236 (401)
T ss_dssp ESTTHHHHHHHHHSCCGGGSCTTBEEEEEETTEEEEEECCCSSSSCEEEEEEECCCTTCSSGGGCCCCHHHHHHHHHHHH
T ss_pred ECccHHHHHHHhhCCCchhcCccceEEEEeCCeEEEEEeCCCCCCCeEEEEEeccccccccccccccHHHHHHHHHHHHh
Confidence 99999999999998888889999998889999899999999999999999999 9999999999999
Q ss_pred CCC---eeecCchhhHhhh---------ccCC---------CC-CCcccccccccccccccCCceeEEecc----CCcEE
Q psy4854 416 DED---VKLAGLGARDSLS---------GDIT---------LN-TPVPHGSLKLSNDRFKSLGKDIHLQFL----SPEER 469 (555)
Q Consensus 416 ag~---~~~~G~~a~~~lR---------~dl~---------~~-~P~E~gl~~~v~~~K~~iG~eal~~~~----~~~lv 469 (555)
+|+ +.++|+.|+++|| +|++ ++ +|+|+||+|+|+|+|+++|||++++++ .|+++
T Consensus 237 ag~~~g~~p~g~~a~~~lRieaG~p~~g~d~~~~~~~~~~~~~~~P~E~gl~~~V~f~KgyiGqE~lar~~~~G~~rrlv 316 (401)
T 1v5v_A 237 EGKKYGIKPCGLGARDTLRLEAGYTLYGNETKELQLLSTDIDEVTPLQANLEFAIYWDKDFIGKDALLKQKERGVGRKLV 316 (401)
T ss_dssp HHGGGTCEEECHHHHHHHHHHHTCCCBTTTBCCCCCSSCSCCSSCTTTTTCGGGCCTTSCCTTHHHHHHHHHHCCCEEEE
T ss_pred hhhccCceecChhHhhHHHHhcCCCccccccChhhccccCcCCCChHHCCcccccCCCCCccCHHHHHHHHhhCCCeEEE
Confidence 863 7899999999999 8999 78 999999999999999999999999887 27899
Q ss_pred EEEEeec--Cc-c-ceEeecccccceeeEEEEeeeeecccCeeEEEEeccccC-CceEEEEeCCcchHH
Q psy4854 470 GLIAVQG--PL-S-STILQRHTDLDLSSLYFMTSRPCTIAGIPCTLTRAGYTG-EDGVEISVPGEQCTH 533 (555)
Q Consensus 470 ~l~~~~g--p~-a-~~v~~~~~~~~~t~~~~~~~~~~~~~~i~~~~~r~~y~g-e~g~EI~i~~~~~~~ 533 (555)
+|.+ ++ ++ . .+|+.++. .++.++....++.....+.+++++.++.. +..++|.+.++...+
T Consensus 317 ~l~~-~~~~~~~~g~~v~~~g~--~vG~VtS~~~sp~~~~~iala~v~~~~~~~g~~l~v~~~g~~~~a 382 (401)
T 1v5v_A 317 HFKM-IDKGIPREGYKVYANGE--MIGEVTSGTLSPLLNVGIGIAFVKEEYAKPGIEIEVEIRGQRKKA 382 (401)
T ss_dssp EEEE-SSSCCCCTTCEEEETTE--EEEEEEEEEECTTTCSEEEEEEEEGGGCSTTCEEEEEETTEEEEE
T ss_pred EEEE-CCCCCCCCCCEEEECCE--EEEEEEeeeEcCCCCceEEEEEEchHHcCCCCEEEEEECCEEEEE
Confidence 9998 44 22 2 78886432 34444444444544456889999998853 455888888865443
No 9
>2gag_A Heterotetrameric sarcosine oxidase alpha-subunit; flavoenzyme, electron transfer, folate-ME enzyme, oxidoreductase; HET: NAD FAD FMN; 1.85A {Stenotrophomonas maltophilia} PDB: 2gah_A* 1x31_A* 1vrq_A* 3ad7_A* 3ad8_A* 3ad9_A* 3ada_A*
Probab=100.00 E-value=2.1e-55 Score=512.98 Aligned_cols=350 Identities=17% Similarity=0.237 Sum_probs=301.7
Q ss_pred ccccc-cCC-CCCCCC-------CCCCCcChHHHHHCCCEEEeeCCcccccccCCC------ChHHHHHHHhcCcEEEec
Q psy4854 181 SGLTF-VFS-PGSSPS-------AEQRTPLYDLHLSHGGKMVPFAGFSMPVQYGAV------SITASHLHTRSKVSVFDV 245 (555)
Q Consensus 181 ~~~~~-p~~-~~~~~r-------~~r~spl~~~~~~~gA~f~~~~g~e~p~~f~~~------~~~~E~~a~r~~v~l~Dl 245 (555)
|-.+| |.. +..++| ++|+||||++|.++||+|.+++||+||.||++. ++.+||+|+|++|+|||+
T Consensus 550 ~r~p~~P~~~~~la~r~~~~~~~~~r~tpl~~~~~~~Ga~~~~~~gw~~p~~y~~~g~~~~~~~~~E~~avr~~~gl~D~ 629 (965)
T 2gag_A 550 FRAPYTPVAFAALAGRNRGDQLDPARITAMHSWHLSHGAEFEDVGQWKRPWYYPQAGETMDQAVYRESKAVRDSVGMLDA 629 (965)
T ss_dssp CCSCSSCEEHHHHHTTCCGGGGSCCBCCTTHHHHHHTTCEEEEETTEEEEEECCCTTCCHHHHHHHHHHHHHHSCEEEEC
T ss_pred ecCCccCcccccccccccccccCCcccCCCHHHHHHcCCEEeeECCEeeehhhCCCCcccchhHHHHHHHHHhCeEEEeC
Confidence 34456 766 667788 999999999999999999999999999999842 378999999999999999
Q ss_pred CCceEEEEEcccHHHHHhhccccCCCCCCCCceEEeeeecCCcceEEEEEEEEecCCeEEEEecccchHHHHHHHHHHHh
Q psy4854 246 SHMLQTVVTGKHREEWLESICVADVHELDPGKGTLSLFTNEQGGIQDDLIVTKTLEDSLFLVSNASRRKVDMDLMVAAQD 325 (555)
Q Consensus 246 S~~~~i~v~G~da~~fLq~l~t~dv~~l~~G~~~yt~~ln~~G~i~~d~~v~r~~~d~~~l~~~~~~~~~~~~~l~~~~~ 325 (555)
|||++|.|+|+||.+|||+++||||++|++|+++|++|||++|+|++|++|+|+++|+|+|+++++..+.+++||++++.
T Consensus 630 S~~g~i~v~G~da~~fL~~l~t~dv~~l~~g~~~y~~~l~~~G~i~~D~~v~r~~~~~~~l~~~~~~~~~~~~~l~~~~~ 709 (965)
T 2gag_A 630 TTLGKIEIRGKDAAEFLNRIYTNGYTKLKVGMGRYGVMCKADGMIFDDGVTLRLAEDRFLLHTTTGGAADVLDWLEEWLQ 709 (965)
T ss_dssp TTSEEEEEESTTHHHHHHHHBSSCCTTCCTTBEEEEEEECTTSCEEEEEEEEEEETTEEEEEECTTTHHHHHHHHHHHHH
T ss_pred CceEEEEEeCcCHHHHHHHhhccCCCcCCCCCEEEEEEECCCCcEEEEEEEEEEeCCEEEEEECcccHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999985
Q ss_pred h-hccCCCCEEEEEccCCCeEEEEEcCCCHHHHHhhcc-ccCCC--CCcccceEeeee-cCccEEEEecCccCCCeEEEE
Q psy4854 326 R-FKSLGKDIHLQFLSAEERGLIAVQGPLSSTILQRHT-DLDLS--SLYFMTSRPCTI-AGIPCTLTRAGYTGEDGVEIS 400 (555)
Q Consensus 326 ~-~~~~~~~V~i~dvs~~~~~~i~v~GP~A~~vL~~l~-~~dl~--~l~~~~~~~~~i-~g~~v~i~R~~~~ge~G~eL~ 400 (555)
. | .+.+|+|+|+| ++++.|.|+||+|+++|++++ ..|++ .+|++++....+ ++.+++++|++|+||+||||+
T Consensus 710 ~~~--~~~~V~i~d~s-~~~~~lal~GP~a~~~l~~~~~~~dl~~~~~~~~~~~~~~~~~g~~~~~~R~~~tGe~G~ei~ 786 (965)
T 2gag_A 710 TEW--PDLDVTCTSVT-EQLATVAVVGPRSRDVIAKLASTVDVSNEGFKFMAFKDVVLDSGIEARISRISFSGELAFEIA 786 (965)
T ss_dssp HTC--TTSCCEEEECT-TTEEEEEEESTTHHHHHHHHCTTSCCSTTTSCTTBEEEEECTTSCEEEEECCCSSSSCEEEEE
T ss_pred hcC--CCCcEEEEEcc-CCEEEEEEECcCHHHHHHHhhCCCCCccccCCCceeEEEEEcCCCEEEEEeCCccCCCEEEEE
Confidence 2 2 13589999999 568999999999999999998 45774 589999988889 888999999999999999999
Q ss_pred ecCCcHHHHHHHHHcCCC---eeecCchhhHhhh---------ccCCCC-CCcccccccccccccccCCceeEEecc---
Q psy4854 401 VPGEQCTHIVEALLSDED---VKLAGLGARDSLS---------GDITLN-TPVPHGSLKLSNDRFKSLGKDIHLQFL--- 464 (555)
Q Consensus 401 ~~~~~a~~l~~~L~~ag~---~~~~G~~a~~~lR---------~dl~~~-~P~E~gl~~~v~~~K~~iG~eal~~~~--- 464 (555)
+|.+++.++|++|+++|+ +.++|+.|+++|| +|++++ +|+|+||+|+|+|+|+|+|||++++++
T Consensus 787 ~~~~~~~~l~~~L~~ag~~~g~~p~G~~a~~~lRiE~G~~~~g~d~~~~~~P~e~gl~~~V~~~K~fiGqe~l~r~~~~g 866 (965)
T 2gag_A 787 VPAWHGLRVWEDVYAAGEEFNITPYGTETMHVLRAEKGFIIVGQDTDGTVTPQDAGMEWVVSKLKDFIGNRSYSRADNAR 866 (965)
T ss_dssp EEGGGHHHHHHHHHHHHGGGTCEECCHHHHHHHHHHTTCCCTTTTCCSSCCTTTTTCGGGSCSSSCCTTGGGGGSHHHHC
T ss_pred EeHHHHHHHHHHHHhcchhcCceeCCHHHHHHHHHhCCccCcccccCCCCCHHHCCchhhcCCCCCcCCHHHHHHHHhcC
Confidence 999999999999999886 8999999999999 899999 999999999999999999999999876
Q ss_pred -C-CcEEEEEEee--cCc-c-ceEeeccc-c-----cceeeEEEEeeeeecccCeeEEEEeccccC-CceEEEEeCCcch
Q psy4854 465 -S-PEERGLIAVQ--GPL-S-STILQRHT-D-----LDLSSLYFMTSRPCTIAGIPCTLTRAGYTG-EDGVEISVPGEQC 531 (555)
Q Consensus 465 -~-~~lv~l~~~~--gp~-a-~~v~~~~~-~-----~~~t~~~~~~~~~~~~~~i~~~~~r~~y~g-e~g~EI~i~~~~~ 531 (555)
. +++++|.+.+ ++. . .+|+.++. . ..++.+++...++.....|.+.+++.++.. +..++|.+.++..
T Consensus 867 ~~rrrlv~l~~~~~~~~~~~g~~i~~~g~~~~~~~~~~vG~vtS~~~sp~lg~~iala~v~~~~~~~g~~~~v~~~~~~~ 946 (965)
T 2gag_A 867 EDRKQLVSVLPVDKSLRLPEGAALVASDALASEGITPMEGWVTSSYDSPNLGRTFGLALIKNGRNRIGEVLKTPVGDQLV 946 (965)
T ss_dssp SSCEEEEEEEESSTTCCCCTTCEEEETTCCCBTTBCCCCEEEEEEEEETTTTEEEEEEEEETGGGCTTCEEEEEETTEEE
T ss_pred CCceEEEEEEEeCCCCCCCCCCEEEECCccccccCCcceEEEEeeeEcCCCCceEEEEEEChhhcCCCCEEEEEECCEEE
Confidence 1 4699999843 222 2 77886542 0 134444444445554456889999998853 4558898888754
Q ss_pred HH
Q psy4854 532 TH 533 (555)
Q Consensus 532 ~~ 533 (555)
.+
T Consensus 947 ~a 948 (965)
T 2gag_A 947 DV 948 (965)
T ss_dssp EE
T ss_pred EE
Confidence 43
No 10
>3ttg_A Putative aminomethyltransferase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; 2.00A {Leptospirillum rubarum}
Probab=100.00 E-value=4.1e-47 Score=395.62 Aligned_cols=290 Identities=15% Similarity=0.117 Sum_probs=241.3
Q ss_pred cccCCCChHH---HHHHHhcCcE-EEecCCceEEEEEcccHHHHHhhccccCCCCCCCCceEEeeeecCCcceEEEEEEE
Q psy4854 222 VQYGAVSITA---SHLHTRSKVS-VFDVSHMLQTVVTGKHREEWLESICVADVHELDPGKGTLSLFTNEQGGIQDDLIVT 297 (555)
Q Consensus 222 ~~f~~~~~~~---E~~a~r~~v~-l~DlS~~~~i~v~G~da~~fLq~l~t~dv~~l~~G~~~yt~~ln~~G~i~~d~~v~ 297 (555)
.+|.. ++.+ ||+|||++|+ +||+|+|++|+|+|+||.+|||+|+||||++|++|+++|++|||++|+|++|++|+
T Consensus 16 ~~~~~-~~~~eh~e~~avr~~~g~l~DlS~~g~i~v~G~DA~~fLq~l~tndv~~l~~g~~~y~~~ln~~G~i~~D~~v~ 94 (355)
T 3ttg_A 16 NLYFQ-GMLTEVSDTRIAHKKFGLFYPSVSRPSIFVEGEDRKNFLQGIASQDILKQDEKSLSYSFFLNPKARILFDAWCG 94 (355)
T ss_dssp CCCCC-CCCGGGTTHHHHHHSCEEECCSSCCCCEEEESTTHHHHHHTTBSSCCSSCCTTBEEEEEEECTTCCEEEEEEEE
T ss_pred ccccc-cchHHHHHHHHHHhcCeEEEeCCCcEEEEEECCCHHHHHhhhhhhccccCCCCCEEEEEEECCCceEEEEEEEE
Confidence 44442 4444 5699999999 99999999999999999999999999999999999999999999999999999999
Q ss_pred EecCCeEEEEecccchHHHHHHHHHHHhhhccCCCCEEEEEccCCCeEEEEEcCCCHHHHHhhccccCCCCCcccceEee
Q psy4854 298 KTLEDSLFLVSNASRRKVDMDLMVAAQDRFKSLGKDIHLQFLSAEERGLIAVQGPLSSTILQRHTDLDLSSLYFMTSRPC 377 (555)
Q Consensus 298 r~~~d~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~V~i~dvs~~~~~~i~v~GP~A~~vL~~l~~~dl~~l~~~~~~~~ 377 (555)
|++ |+|+|++++++.+.+++||++++. | +.+|+|+|+| ++++.|.|+||+|+++|++++..+++.+++...
T Consensus 95 r~~-d~~~lv~~a~~~~~~~~~L~~~~~-~---~~~V~i~d~s-~~~~~lalqGP~a~~~l~~l~~~~l~~~~~~~~--- 165 (355)
T 3ttg_A 95 NFE-DKIALFPPAGTREEFVNHLKKYLF-F---RTKAKITDMS-DHFREIRLVGPETISVLLSLFDNNFSGSSFRML--- 165 (355)
T ss_dssp EET-TEEEEECCTTCHHHHHHHHHHTCC-T---TCCCEEEECG-GGEEEEEEESTTHHHHHHHHSSSCCCSSEEEEC---
T ss_pred EEC-CEEEEEECcccHHHHHHHHHHhcc-c---CCCeEEEECc-CCEEEEEEECCcHHHHHHHhccCCCccCcceee---
Confidence 997 699999999999999999999874 2 3689999998 568999999999999999998777777765433
Q ss_pred eecCccEEE-EecC-ccCC--CeEEEEecCCcHHHHHHHHHcCCC---eeecCchhhHhhh---------ccCCCC-CCc
Q psy4854 378 TIAGIPCTL-TRAG-YTGE--DGVEISVPGEQCTHIVEALLSDED---VKLAGLGARDSLS---------GDITLN-TPV 440 (555)
Q Consensus 378 ~i~g~~v~i-~R~~-~~ge--~G~eL~~~~~~a~~l~~~L~~ag~---~~~~G~~a~~~lR---------~dl~~~-~P~ 440 (555)
.+ +..+.+ .|++ |+|| +||||++|.+++..+|++|+++|+ +.++|+.|+++|| +|++++ +|+
T Consensus 166 ~~-g~~~~~~~r~GsytGE~e~G~el~~p~~~a~~l~~~L~~aG~~~g~~~~G~~a~d~lRiEaG~p~~g~d~~~~~~P~ 244 (355)
T 3ttg_A 166 KN-GGYVLIHPTSFQHNLDVGLQADLFIPIDQFETTQKSLEDFTSNKGGVLLDESSYLAYLTEKGIPLFPSELNDSFFPA 244 (355)
T ss_dssp TT-SCEEEECCSBCGGGCBCCCEEEEEEEGGGHHHHHHHHHHHHHHHTCEECCHHHHHHHHHHTTCCCTTTTSSTTCCTT
T ss_pred cc-CcEEEEecCcccccCccCCeEEEEEeHHHHHHHHHHHHhhhhhcCCccCCHHHHHHHHHHCCCcccccccCCCCCHH
Confidence 23 344555 6776 9997 999999999999999999999653 7899999999999 899999 999
Q ss_pred ccccc-ccccccccc-CCceeEEecc-----CCcEEEEEEeecC--c-c-ceEee----cccccceeeEEEEeeeeeccc
Q psy4854 441 PHGSL-KLSNDRFKS-LGKDIHLQFL-----SPEERGLIAVQGP--L-S-STILQ----RHTDLDLSSLYFMTSRPCTIA 505 (555)
Q Consensus 441 E~gl~-~~v~~~K~~-iG~eal~~~~-----~~~lv~l~~~~gp--~-a-~~v~~----~~~~~~~t~~~~~~~~~~~~~ 505 (555)
|+||. |+|+|+|+| +|||++++++ .|++++|.+ +++ + . .+|+. ++. .++.++....++...+
T Consensus 245 Eagl~~~~V~f~KgcfiGqE~lar~~~~G~~~rrlv~l~~-~~~~~~~~g~~v~~~~~~~g~--~vG~VtS~~~sp~lg~ 321 (355)
T 3ttg_A 245 EAGLDSVGVSYNKGCYVGQEPVTRLKFQGHLNRSLAGFRL-EGGPFPKMEFPVTLFNPKDGN--EAGILTRTSSSDILGS 321 (355)
T ss_dssp TTTCHHHHCCSSSCCCTTHHHHHHHHHTSCCCEEEEEEEE-CC---CCSCSSEEEECTTTCC--EEEEEEEEEEETTTTE
T ss_pred HcCCCCCeEECCCCCccCHHHHHHHHhcCCCceEEEEEEE-CCCCCCCCCCEEEeccCCCCc--eEEEEEEeeECCCCCC
Confidence 99999 999999998 9999999876 278999998 553 2 2 67876 222 3444444444555555
Q ss_pred CeeEEEEeccccCCceEEEEe
Q psy4854 506 GIPCTLTRAGYTGEDGVEISV 526 (555)
Q Consensus 506 ~i~~~~~r~~y~ge~g~EI~i 526 (555)
++.+++++.++. +.|-+|.+
T Consensus 322 ~iaLa~v~~~~~-~~g~~l~v 341 (355)
T 3ttg_A 322 GIGLGYIKRNFS-ENGTELLL 341 (355)
T ss_dssp EEEEEEEEGGGC-STTCEEEC
T ss_pred EEEEEEEehhhc-CCCCEEEe
Confidence 788999999885 34445655
No 11
>1vly_A SPOT PR51, unknown protein from 2D-PAGE; structural genomics, joint center for structural genomics, J protein structure initiative, PSI; HET: MSE; 1.30A {Escherichia coli} SCOP: b.44.2.1 d.250.1.1 PDB: 1nrk_A
Probab=100.00 E-value=3.3e-40 Score=341.70 Aligned_cols=270 Identities=10% Similarity=0.046 Sum_probs=215.5
Q ss_pred cCcEEEecCCceEEEEEcccHHHHHhhccccCCCCCCCCceEEeeeecCCcceEEEEEEEEecCCeEEEEecccchHHHH
Q psy4854 238 SKVSVFDVSHMLQTVVTGKHREEWLESICVADVHELDPGKGTLSLFTNEQGGIQDDLIVTKTLEDSLFLVSNASRRKVDM 317 (555)
Q Consensus 238 ~~v~l~DlS~~~~i~v~G~da~~fLq~l~t~dv~~l~~G~~~yt~~ln~~G~i~~d~~v~r~~~d~~~l~~~~~~~~~~~ 317 (555)
-.|++||+|||++|+|+|+||.+|||+++||||+++++|+++||+|||++|+|++|++|+|+++ +|+|+++++..+.++
T Consensus 29 ~~~~l~dlS~~~~i~v~G~DA~~fLq~l~tndv~~l~~g~~~yt~~ln~~G~i~~D~~v~r~~~-~~~lv~~a~~~~~~~ 107 (338)
T 1vly_A 29 LPLTLMTLDDWALATITGADSEKYMQGQVTADVSQMAEDQHLLAAHCDAKGKMWSNLRLFRDGD-GFAWIERRSVREPQL 107 (338)
T ss_dssp CCSEEEECTTEEEEEEESTTHHHHHHTTBSSCGGGCCTTCEEEEEEECTTSCEEEEEEEEEETT-EEEEEEEHHHHHHHH
T ss_pred CceEEEECCCcEEEEEECCCHHHHhcchhhhcccccCCCceEEEEEECCCCCEEEEEEEEEeCC-cEEEEecchhhHHHH
Confidence 4589999999999999999999999999999999999999999999999999999999999987 899999999999999
Q ss_pred HHHHHHHhhhccCCCCEEEEEccCCCeEEEEEcCCCHHHHHhhccc-cCCCCCcccceEeeeecCccEEEEecCccCCCe
Q psy4854 318 DLMVAAQDRFKSLGKDIHLQFLSAEERGLIAVQGPLSSTILQRHTD-LDLSSLYFMTSRPCTIAGIPCTLTRAGYTGEDG 396 (555)
Q Consensus 318 ~~l~~~~~~~~~~~~~V~i~dvs~~~~~~i~v~GP~A~~vL~~l~~-~dl~~l~~~~~~~~~i~g~~v~i~R~~~~ge~G 396 (555)
+||++|+. ..+|+|++.. +++.+.|+||+|+++|+.++. .+...+++ ..+++.+ +.+.+ +||+|
T Consensus 108 ~~L~~~~~-----~~~V~i~~~~--~~~~lal~Gp~a~~~l~~~~~~~~~~~~~~-----~~~~g~~--~~~~~-tge~G 172 (338)
T 1vly_A 108 TELKKYAV-----FSKVTIAPDD--ERVLLGVAGFQARAALANLFSELPSKEKQV-----VKEGATT--LLWFE-HPAER 172 (338)
T ss_dssp HHHHTTCS-----SSSCEEEEEC--SSEEEEEESTTHHHHHHTTSSCCCBTTBCE-----EEETTEE--EEEEC-SSSCE
T ss_pred HHHHHhhh-----hcceEEEEcC--ceEEEEEECCcHHHHHHhhcccCCCcccce-----eecCCeE--EEEec-CCCCc
Confidence 99999864 2589999875 789999999999999999875 23334543 3556644 34444 89999
Q ss_pred EEEEecCCcHHHHHHHHHcCCCeeecCchhhHhhh---------ccCCCC-CCcccccc--ccccccccc-CCceeEEec
Q psy4854 397 VEISVPGEQCTHIVEALLSDEDVKLAGLGARDSLS---------GDITLN-TPVPHGSL--KLSNDRFKS-LGKDIHLQF 463 (555)
Q Consensus 397 ~eL~~~~~~a~~l~~~L~~ag~~~~~G~~a~~~lR---------~dl~~~-~P~E~gl~--~~v~~~K~~-iG~eal~~~ 463 (555)
|||++|.+++..+|++|+++ +.++|+.|+++|| +|++++ +|+|+||+ |.|+|+|+| +|||+++|+
T Consensus 173 ~el~~~~~~~~~l~~~L~~~--~~~~g~~a~~~lRieaG~p~~g~d~~~~~~P~Eagl~~l~~V~f~KgcyiGqE~lar~ 250 (338)
T 1vly_A 173 FLIVTDEATANMLTDKLRGE--AELNNSQQWLALNIEAGFPVIDAANSGQFIPQATNLQALGGISFKKGCYTGQEMVARA 250 (338)
T ss_dssp EEEEECHHHHHHHHHHHBTT--BEEECHHHHHHHHHHHTCCCCCGGGTTSCCGGGGTGGGTTCCCSSSCCCTTHHHHHHT
T ss_pred EEEEechHHHHHHHHHhhhc--CccCCHHHHHHHHHHcCCccccccccCCcChhhcCccccCCCcCCCcccCCHHHHHHH
Confidence 99999999999999999986 7899999999999 899999 99999999 999999998 999999988
Q ss_pred c-C----CcEEEEEEee-cCc-c-ceEee-c-c--cc-cceeeEEEEeeeeecccCeeEEEEeccccCCceEEEEeCCcc
Q psy4854 464 L-S----PEERGLIAVQ-GPL-S-STILQ-R-H--TD-LDLSSLYFMTSRPCTIAGIPCTLTRAGYTGEDGVEISVPGEQ 530 (555)
Q Consensus 464 ~-~----~~lv~l~~~~-gp~-a-~~v~~-~-~--~~-~~~t~~~~~~~~~~~~~~i~~~~~r~~y~ge~g~EI~i~~~~ 530 (555)
+ . |+++.+...+ +++ . .+|+. . + .. +.+++..| .+ ....+.+++++.++ ..|-++.+.++.
T Consensus 251 ~~~G~~rr~l~~l~~~~~~~~~~g~~v~~~~~~~g~~vG~VtS~~~---~~-~g~~iala~v~~~~--~~g~~l~v~g~~ 324 (338)
T 1vly_A 251 KFRGANKRALWLLAGSASRLPEAGEDLELKMGENWRRTGTVLAAVK---LE-DGQVVVQVVMNNDM--EPDSIFRVRDDA 324 (338)
T ss_dssp TSTTSCCEEEEEEEECCSSCCCTTCCEEEEETTEEEEECEEEEEEE---CT-TSCEEEEEEEETTC--CTTCCEESTTCS
T ss_pred HhcCCCceEEEEEecCCCCCCCCCCEeEeccCCCCccceEEEEEEE---CC-CCCEEEEEEEeccc--CCCCeEEECCCC
Confidence 7 2 3344443321 222 2 77873 2 2 11 23444333 22 22357788888877 344455555543
Q ss_pred h
Q psy4854 531 C 531 (555)
Q Consensus 531 ~ 531 (555)
.
T Consensus 325 ~ 325 (338)
T 1vly_A 325 N 325 (338)
T ss_dssp S
T ss_pred c
Confidence 3
No 12
>2gag_C Heterotetrameric sarcosine oxidase gamma-subunit; flavoenzyme, electron transfer, folate-ME enzyme, oxidoreductase; HET: NAD FAD FMN; 1.85A {Stenotrophomonas maltophilia} PDB: 2gah_C*
Probab=99.95 E-value=2.8e-28 Score=234.90 Aligned_cols=163 Identities=18% Similarity=0.173 Sum_probs=140.2
Q ss_pred HHhcCcEEEecCCceEEEEEcccH---HHHHhhccccCCCCCCCCceEEeeeecCCcceEEEEEEEEecCCeEEEEeccc
Q psy4854 235 HTRSKVSVFDVSHMLQTVVTGKHR---EEWLESICVADVHELDPGKGTLSLFTNEQGGIQDDLIVTKTLEDSLFLVSNAS 311 (555)
Q Consensus 235 a~r~~v~l~DlS~~~~i~v~G~da---~~fLq~l~t~dv~~l~~G~~~yt~~ln~~G~i~~d~~v~r~~~d~~~l~~~~~ 311 (555)
+.|++|+|||+|||+++.|+|+|+ .++|+.+++++++. +.|.+.++ ++|++|+|+++|+|+|++++
T Consensus 27 ~~r~~vglfDvShmg~~~v~G~~a~~~l~~l~~~~g~~l~~-~~g~v~~~---------~dDl~v~rl~~d~~llv~na- 95 (210)
T 2gag_C 27 SVAGRVELREIAFTTQISLRCAPGTQAHAALAAATGAGLPA-KVGEVAGE---------AQGTAVLWLAPDEFLATSAE- 95 (210)
T ss_dssp CBTTTBEEEECCSCEEEEEECCTTSHHHHHHHHHHSSCCCC-STTBCEEC---------TTSCEEEEEETTEEEEEESS-
T ss_pred cccCcEEEEECCCCcEEEEEeCChhHHHHHHHHHhCcCCCC-CCCEEEEc---------cCCEEEEEEcCCEEEEEeCc-
Confidence 379999999999999999999994 55666677776654 33333221 58999999999999999987
Q ss_pred chHHHHHHHHHHHhhhccCCCCEEEEEccCCCeEEEEEcCCCHHHHHhhccccCCCC--CcccceEeeeecCccEEEEec
Q psy4854 312 RRKVDMDLMVAAQDRFKSLGKDIHLQFLSAEERGLIAVQGPLSSTILQRHTDLDLSS--LYFMTSRPCTIAGIPCTLTRA 389 (555)
Q Consensus 312 ~~~~~~~~l~~~~~~~~~~~~~V~i~dvs~~~~~~i~v~GP~A~~vL~~l~~~dl~~--l~~~~~~~~~i~g~~v~i~R~ 389 (555)
.+++++||++++.. .+|.+.|+| ++++.|.||||+|+++|+++++.|+++ ||+++++.+.+++.+++++|
T Consensus 96 -~~~d~~~l~~~l~~-----~~v~v~d~s-~~~a~lalqGP~A~~vL~~l~~~dl~~~~~~~~~~~~~~v~g~~v~v~R- 167 (210)
T 2gag_C 96 -NTELGGVLSAALGD-----APGQVVDLS-ANRSVLELTGPDAPLVLRKSCPADLHPRAFAVNQAIVTSVANIPVLLWR- 167 (210)
T ss_dssp -CTTHHHHHHHHHTT-----SSSEEEECT-TTBCCEEEESTTHHHHHTTTCCSCCSTTTSCTTBEEEEEETTEEEEEEE-
T ss_pred -HHHHHHHHHHhcCc-----CCEEEEECC-CCEEEEEEECHhHHHHHHhhCcccCCcccCCCCcEEEEEECCEEEEEEE-
Confidence 57799999998752 368999999 568999999999999999999888885 99999999999999999999
Q ss_pred CccCCCeEEEEecCCcHHHHHHHHHcCCC
Q psy4854 390 GYTGEDGVEISVPGEQCTHIVEALLSDED 418 (555)
Q Consensus 390 ~~~ge~G~eL~~~~~~a~~l~~~L~~ag~ 418 (555)
+||+||||++|++++.++|+.|+++++
T Consensus 168 --tGEdGfEI~v~~~~A~~lw~~Ll~a~~ 194 (210)
T 2gag_C 168 --TGEQAWRIMPRASFTEHTVHWLVDAMS 194 (210)
T ss_dssp --EETTEEEEEEBGGGHHHHHHHHHHHHH
T ss_pred --eCCCEEEEEEEHHHHHHHHHHHHHHHH
Confidence 899999999999999999999998753
No 13
>1x31_C Sarcosine oxidase gamma subunit; heterotetrameric sarcosine oxidase, flavoenzyme, oxidoreduct; HET: FAD NAD FMN; 2.15A {Corynebacterium SP} PDB: 1vrq_C* 3ad7_C* 3ad8_C* 3ad9_C* 3ada_C*
Probab=99.95 E-value=1.6e-27 Score=229.03 Aligned_cols=159 Identities=18% Similarity=0.195 Sum_probs=137.3
Q ss_pred HhcCcEEEecCCceEEEEEcccHHHHH---hhccccCCCCCCCCceEEeeeecCCcce---EEEEEEEEecCCeEEEEec
Q psy4854 236 TRSKVSVFDVSHMLQTVVTGKHREEWL---ESICVADVHELDPGKGTLSLFTNEQGGI---QDDLIVTKTLEDSLFLVSN 309 (555)
Q Consensus 236 ~r~~v~l~DlS~~~~i~v~G~da~~fL---q~l~t~dv~~l~~G~~~yt~~ln~~G~i---~~d~~v~r~~~d~~~l~~~ 309 (555)
.+++|+|||+|||+++.|+|+||.+|| +.+++++++ ++.|++ ++|++|+|+++|+|+|++|
T Consensus 26 ~~~~vglfDvShmg~~~v~G~~a~~~l~~l~~~~~~~l~-------------~~~g~~~~~~dDl~v~rl~~d~~llv~n 92 (206)
T 1x31_C 26 GERAVTLREVAFTTQLGLRAVPGSTGHAALAAATGVGLP-------------AAVGEVAGDVSGTAVLWLGPDEFLLAAE 92 (206)
T ss_dssp STTCBEEEECCSCEEEEEECCTTSHHHHHHHHHSSSCCC-------------CSTTBEEECTTSCEEEEEETTEEEEEES
T ss_pred CCCcEEEEECCCCcEEEEEeCChhHHHHHHHHHhCcCCC-------------CCCCEEEEecCCEEEEEEcCCEEEEEcC
Confidence 457899999999999999999999555 444555544 344555 7999999999999999998
Q ss_pred ccchHHHHHHHHHHHhhhccCCCCEEEEEccCCCeEEEEEcCCCHHHHHhhccccCCCC--CcccceEeeeecCccEEEE
Q psy4854 310 ASRRKVDMDLMVAAQDRFKSLGKDIHLQFLSAEERGLIAVQGPLSSTILQRHTDLDLSS--LYFMTSRPCTIAGIPCTLT 387 (555)
Q Consensus 310 ~~~~~~~~~~l~~~~~~~~~~~~~V~i~dvs~~~~~~i~v~GP~A~~vL~~l~~~dl~~--l~~~~~~~~~i~g~~v~i~ 387 (555)
+ .+++++||++++.. .++.+.|+| ++++.|.||||+|+++|+++++.|+++ ||+++++.+.+++.+++++
T Consensus 93 a--~~~d~~~l~~~l~~-----~~v~v~d~s-~~~a~lalqGP~A~~vL~~l~~~dl~~~~~~~~~~~~~~v~g~~v~i~ 164 (206)
T 1x31_C 93 E--NPALLDTLQGALGQ-----EPGQVLDLS-ANRSVLQLEGPAAALVLRKSCPADLHPREFGVNRAITTSLANIPVLLW 164 (206)
T ss_dssp S--CTHHHHHHHHHHTT-----SSSEEEECT-TTBCCEEEESTTHHHHHTTTCCSCCCTTTSCTTEEEEEEETTEEEEEE
T ss_pred c--hHHHHHHHHHhcCc-----CcEEEEECC-CCEEEEEEECHhHHHHHHhhCcccCCcccCCCCcEEEEEEcCeEEEEE
Confidence 7 57899999998752 358999999 568999999999999999999888875 9999999999999999999
Q ss_pred ecCccCCCeEEEEecCCcHHHHHHHHHcCCC
Q psy4854 388 RAGYTGEDGVEISVPGEQCTHIVEALLSDED 418 (555)
Q Consensus 388 R~~~~ge~G~eL~~~~~~a~~l~~~L~~ag~ 418 (555)
|+ ||+||||++|++++.+||+.|+++|+
T Consensus 165 Rt---gEdGfEI~v~~~~A~~lw~~L~~ag~ 192 (206)
T 1x31_C 165 RT---GEQSWRILPRASFTEHTVHWLIDAMS 192 (206)
T ss_dssp EE---ETTEEEEECBGGGHHHHHHHHHHHHG
T ss_pred Ec---CCCeEEEEEEHHHHHHHHHHHHHHHH
Confidence 94 59999999999999999999998764
No 14
>3gir_A Aminomethyltransferase; glycine cleavage system, aminotransferase, structural genomics; 1.60A {Bartonella henselae}
Probab=99.92 E-value=2.5e-25 Score=233.72 Aligned_cols=118 Identities=32% Similarity=0.574 Sum_probs=110.1
Q ss_pred ccceeeeeccccCCCCCCCcHHHHHHHHHcCCCeEEEEEEeCCC-CCCCCCEEEcCCCcEEEEEeeccccCCCCCeeEEE
Q psy4854 4 YSRLLIFPGKRRRETGGFPGASIIQSQIKSGVSRKRTGFTSTGV-PIRPGYEIFNANDQRVGAITSGCPSPSLKKNIAMG 82 (555)
Q Consensus 4 ~~~l~w~v~~~~~~k~~fiG~~al~~~~~~g~~~~lvgl~~~~~-~~~~g~~v~~~~g~~vG~vTS~~~SP~l~~~I~~a 82 (555)
-++|+|+|+++|++|+||||||+|++++.+|++|++|||.+++. ++++|++|++.+|+.||+||||+|||+++++||||
T Consensus 275 EagL~~~V~~~k~~Kg~fiGqeal~r~~~~G~~rrlvgl~~~~~~~~~~G~~v~~~~g~~vG~VTS~~~sp~l~~~iaLa 354 (393)
T 3gir_A 275 DAALTWAVPKNVREKAQFYGAKAFLESLQKGPSRCRVGLKPQTRQPIRAGAVLFDNEGNRIGVVTSGGFGPSFDGPVAMG 354 (393)
T ss_dssp TTTCGGGSCHHHHHHCCSTTHHHHHHHHHHCCSSEEEEEEESSSSCCCTTCEEECTTSCEEEEEEEEEEETTTTEEEEEE
T ss_pred HCCchheecCCCCCCCCCcCHHHHHHHHhcCCCeEEEEEEECCCcCCCCCCEEEccCCeEEEEEEEEEECCCCCcEEEEE
Confidence 57999999997655789999999999999999999999999974 67999999866899999999999999999999999
Q ss_pred EecCCccCCCCEEEEEECCeEEeEEEEeCCCccCccccC
Q psy4854 83 YIEPAYSKVGVELWVRVRDKRVDVKVTKMPFVKSNYYTP 121 (555)
Q Consensus 83 ~v~~~~~~~g~~~~v~~~~~~~~a~v~~~Pf~~~~~~~~ 121 (555)
||+.+++++|++|+|+++|+.++|+|+++|||+++|||+
T Consensus 355 ~v~~~~~~~G~~l~v~i~g~~~~a~v~~~PF~~~~~~~~ 393 (393)
T 3gir_A 355 YVPVAWKVEGTEVFTELRGKKIALSVHSLPFVEQRYFKG 393 (393)
T ss_dssp EECGGGCSTTCEEEEEETTEEEEEEEECSCSSCCCCCC-
T ss_pred EEcHHHcCCCCEEEEEECCEEEEEEEecCCCCCCCCCCC
Confidence 999999999999999999999999999999999999874
No 15
>1wsr_A Aminomethyltransferase; glycine-cleavage sytem; 2.00A {Homo sapiens} PDB: 1wsv_A*
Probab=99.89 E-value=2.9e-23 Score=217.78 Aligned_cols=119 Identities=48% Similarity=0.793 Sum_probs=109.4
Q ss_pred cccceeeeeccccCCCCCCCcHHHHHHHHHcCCCeEEEEEEeCCCCCCCCCEEEcCCCcEEEEEeeccccCCCCCeeEEE
Q psy4854 3 IYSRLLIFPGKRRRETGGFPGASIIQSQIKSGVSRKRTGFTSTGVPIRPGYEIFNANDQRVGAITSGCPSPSLKKNIAMG 82 (555)
Q Consensus 3 ~~~~l~w~v~~~~~~k~~fiG~~al~~~~~~g~~~~lvgl~~~~~~~~~g~~v~~~~g~~vG~vTS~~~SP~l~~~I~~a 82 (555)
.-++|+|+|+++|++|+||||||+|.+++..|++|++|||..++.++++|++|++.+|+.||+|||++|||+++++||||
T Consensus 256 ~Eagl~~~V~~~~~~Kg~fiGqe~lar~~~~g~~rrlv~l~~~~~~~~~g~~v~~~~g~~vG~vtS~~~sp~lg~~iala 335 (375)
T 1wsr_A 256 VEGSLSWTLGKRRRAAMDFPGAKVIVPQLKGRVQRRRVGLMCEGAPMRAHSPILNMEGTKIGTVTSGCPSPSLKKNVAMG 335 (375)
T ss_dssp TTTTCGGGSCHHHHHHTCSTTHHHHHHHHTTCCSCEEEEEEESSSCCCTTCEEECTTSCEEEEEEEEEEETTTTEEEEEE
T ss_pred hHCCchheecCCCCCCCCCcCHHHHHHHHhcCCCEEEEEEEcCCccCCCCCEEEcCCCcEEEEEecceecCcCCceEEEE
Confidence 35799999999754478999999999999999999999998766678999999855899999999999999999999999
Q ss_pred EecCCccCCCCEEEEEECCeEEeEEEEeCCCccCccccC
Q psy4854 83 YIEPAYSKVGVELWVRVRDKRVDVKVTKMPFVKSNYYTP 121 (555)
Q Consensus 83 ~v~~~~~~~g~~~~v~~~~~~~~a~v~~~Pf~~~~~~~~ 121 (555)
||+.+++++|+++.|+++|+.++|+|+++||++++|||+
T Consensus 336 ~v~~~~~~~g~~~~v~~~g~~~~a~v~~~Pf~~~~~~~~ 374 (375)
T 1wsr_A 336 YVPCEYSRPGTMLLVEVRRKQQMAVVSKMPFVPTNYYTL 374 (375)
T ss_dssp EECGGGCSTTCEEEEEETTEEEEEEEECSCSSCCCCCCC
T ss_pred EEChHHcCCCCEEEEEECCEEEEEEEEccCCcCccccCC
Confidence 999999999999999999999999999999999998885
No 16
>3tfi_A GCVT-like aminomethyltransferase protein; demethylase, THF; 1.60A {Candidatus pelagibacter ubique} PDB: 3tfh_A 3tfj_A*
Probab=99.87 E-value=1.7e-22 Score=211.07 Aligned_cols=108 Identities=17% Similarity=0.267 Sum_probs=99.8
Q ss_pred cccceeeeeccccCCCC-CCCcHHHHHHHHHcCCCeEEEEEEeCCCC-C--CCCCEEEcCCCcEEEEEeeccccCCCCCe
Q psy4854 3 IYSRLLIFPGKRRRETG-GFPGASIIQSQIKSGVSRKRTGFTSTGVP-I--RPGYEIFNANDQRVGAITSGCPSPSLKKN 78 (555)
Q Consensus 3 ~~~~l~w~v~~~~~~k~-~fiG~~al~~~~~~g~~~~lvgl~~~~~~-~--~~g~~v~~~~g~~vG~vTS~~~SP~l~~~ 78 (555)
+-++|+|+|+++ |+ ||||||+|++++.+|++|++|||.+++.. + ++|++|+ .+|+.||+||||+|||+++++
T Consensus 258 ~Eagl~~~V~~~---Kg~~fiGqeal~r~~~~G~~rrlvgl~~~~~~~~~~~~g~~v~-~~g~~vG~VTS~~~sp~lg~~ 333 (369)
T 3tfi_A 258 FECGFDQYVSLD---SDINFLGKEKLKEIKLKGPQKKLRGVKIDIKEISLTGSKNIYD-ENNNVIGELRSACYSPHFQKV 333 (369)
T ss_dssp GGTTCGGGCCCS---SSCCCTTHHHHHHHHHHCCSEEEEEEEESSSCCCCCSCEEEEC-TTCCEEEEEEEEEEETTTTEE
T ss_pred HHCCchhhccCC---CCCCCcCHHHHHHHHhcCCCeEEEEEEECCCCCCCcCCCCEEE-eCCeEEEEEEeeeECCCCCce
Confidence 357999999874 55 99999999999999999999999999863 2 5788998 689999999999999999999
Q ss_pred eEEEEecCCccCCCCEEEEEECCeEEeEEEEeCCCc
Q psy4854 79 IAMGYIEPAYSKVGVELWVRVRDKRVDVKVTKMPFV 114 (555)
Q Consensus 79 I~~a~v~~~~~~~g~~~~v~~~~~~~~a~v~~~Pf~ 114 (555)
||||||+.+++++|++|+|+++|+.++|+|+++|||
T Consensus 334 iala~v~~~~~~~G~~l~v~i~g~~~~a~v~~~Pf~ 369 (369)
T 3tfi_A 334 IGIAMIKKSHWEASQGFKIQINDNTINGNVCDLPFI 369 (369)
T ss_dssp EEEEEEEGGGCSTTCEEEEEETTEEEEEEEECSSCC
T ss_pred EEEEEECHHHcCCCCEEEEEECCEEEEEEEECCCCC
Confidence 999999999999999999999999999999999997
No 17
>1yx2_A Aminomethyltransferase; glycine cleavage system T protein, alpha-beta, beta-barrel, structural genomics, PSI, protein structure initiative; 2.08A {Bacillus subtilis}
Probab=99.85 E-value=3e-21 Score=201.81 Aligned_cols=110 Identities=34% Similarity=0.527 Sum_probs=100.1
Q ss_pred cccceeeeeccccCCCCC-CCcHHHHHHHHHcCCCeEEEEEEeCCC-CCCCCCEEEcCCCcEEEEEeeccccCCCCCeeE
Q psy4854 3 IYSRLLIFPGKRRRETGG-FPGASIIQSQIKSGVSRKRTGFTSTGV-PIRPGYEIFNANDQRVGAITSGCPSPSLKKNIA 80 (555)
Q Consensus 3 ~~~~l~w~v~~~~~~k~~-fiG~~al~~~~~~g~~~~lvgl~~~~~-~~~~g~~v~~~~g~~vG~vTS~~~SP~l~~~I~ 80 (555)
.-++|+|+|+++ |+| |||||+|.+++..|++|++|||.+++. ++++|++|+ .+|+.||+|||++|||+++++||
T Consensus 254 ~e~~l~~~V~~~---Kgc~yiGqe~lar~~~~g~~rrlv~l~~~~~~~~~~g~~v~-~~g~~vG~vtS~~~sp~~~~~ia 329 (365)
T 1yx2_A 254 IEAGIGFAVKHK---KESDFFGKSVLSEQKENGAKRKLVGLEMIEKGIPRHGYEVF-QNGKSVGKVTTGTQSPTLGKNVG 329 (365)
T ss_dssp TTTTCGGGCCTT---CSSCCTTHHHHHHHHHHCCSEEEEEEEESSSCCCCTTCEEE-ETTEEEEEEEEEEEETTTTEEEE
T ss_pred HHCCccceecCC---CCCCCcCHHHHHHHHhcCCCeEEEEEEECCCcCCCCCCEEE-ECCeeEEEEEeccccCCCCceEE
Confidence 357999999984 575 999999999999999999999999984 679999998 58999999999999999999999
Q ss_pred EEEecCCccCCCCEEEEEECCeEEeEEEEeCCCccC
Q psy4854 81 MGYIEPAYSKVGVELWVRVRDKRVDVKVTKMPFVKS 116 (555)
Q Consensus 81 ~a~v~~~~~~~g~~~~v~~~~~~~~a~v~~~Pf~~~ 116 (555)
||||+.+++++|+++.|+++|+.++|+|+++|||++
T Consensus 330 la~v~~~~~~~g~~~~v~~~g~~~~a~v~~~Pf~~~ 365 (365)
T 1yx2_A 330 LALIDSETSEIGTVVDVEIRKKLVKAKVVKTPFYKR 365 (365)
T ss_dssp EEEEEGGGCSTTCEEEEEETTEEEEEEEECCCC---
T ss_pred EEEEChHHcCCCCEEEEEECCEEEEEEEEcCCCCCC
Confidence 999999999999999999999999999999999974
No 18
>1v5v_A Aminomethyltransferase; glycine-cleavage sytem, structural riken structural genomics/proteomics initiative, RSGI; 1.50A {Pyrococcus horikoshii} SCOP: b.44.2.1 d.250.1.1
Probab=99.82 E-value=4.4e-20 Score=195.13 Aligned_cols=110 Identities=28% Similarity=0.446 Sum_probs=102.2
Q ss_pred ccceeeeeccccCCCCCCCcHHHHHHHHHcCCCeEEEEEEeCCC-CCCCCCEEEcCCCcEEEEEeeccccCCCCCeeEEE
Q psy4854 4 YSRLLIFPGKRRRETGGFPGASIIQSQIKSGVSRKRTGFTSTGV-PIRPGYEIFNANDQRVGAITSGCPSPSLKKNIAMG 82 (555)
Q Consensus 4 ~~~l~w~v~~~~~~k~~fiG~~al~~~~~~g~~~~lvgl~~~~~-~~~~g~~v~~~~g~~vG~vTS~~~SP~l~~~I~~a 82 (555)
-++|+|+|+++ |+ |||||+|++++..|+.|++|||.+++. ++++|++|+ .+|+.||+|||++|||+++++||||
T Consensus 284 E~gl~~~V~f~---Kg-yiGqE~lar~~~~G~~rrlv~l~~~~~~~~~~g~~v~-~~g~~vG~VtS~~~sp~~~~~iala 358 (401)
T 1v5v_A 284 QANLEFAIYWD---KD-FIGKDALLKQKERGVGRKLVHFKMIDKGIPREGYKVY-ANGEMIGEVTSGTLSPLLNVGIGIA 358 (401)
T ss_dssp TTTCGGGCCTT---SC-CTTHHHHHHHHHHCCCEEEEEEEESSSCCCCTTCEEE-ETTEEEEEEEEEEECTTTCSEEEEE
T ss_pred HCCcccccCCC---CC-ccCHHHHHHHHhhCCCeEEEEEEECCCCCCCCCCEEE-ECCEEEEEEEeeeEcCCCCceEEEE
Confidence 57999999985 45 999999999999999999999999884 679999999 4899999999999999999999999
Q ss_pred EecCCccCCCCEEEEEECCeEEeEEEEeCCCccCcc
Q psy4854 83 YIEPAYSKVGVELWVRVRDKRVDVKVTKMPFVKSNY 118 (555)
Q Consensus 83 ~v~~~~~~~g~~~~v~~~~~~~~a~v~~~Pf~~~~~ 118 (555)
||+.+++++|+++.|+++|+.++|+|+++||++++.
T Consensus 359 ~v~~~~~~~g~~l~v~~~g~~~~a~v~~~Pf~~~~~ 394 (401)
T 1v5v_A 359 FVKEEYAKPGIEIEVEIRGQRKKAVTVTPPFYDPKK 394 (401)
T ss_dssp EEEGGGCSTTCEEEEEETTEEEEEEEECSCSSCTTT
T ss_pred EEchHHcCCCCEEEEEECCEEEEEEEEccCCccccc
Confidence 999999999999999999999999999999998853
No 19
>1wos_A Aminomethyltransferase; T-protein; 1.84A {Thermotoga maritima} SCOP: b.44.2.1 d.250.1.1 PDB: 1woo_A* 1wop_A* 1wor_A
Probab=99.82 E-value=4.7e-20 Score=192.71 Aligned_cols=111 Identities=32% Similarity=0.426 Sum_probs=101.7
Q ss_pred cccceeeeeccccCCCCCCCcHHHHHHHHHcCCCeEEEEEEeCCC-CCCCCCEEEcCCCcEEEEEeeccccCCCCCeeEE
Q psy4854 3 IYSRLLIFPGKRRRETGGFPGASIIQSQIKSGVSRKRTGFTSTGV-PIRPGYEIFNANDQRVGAITSGCPSPSLKKNIAM 81 (555)
Q Consensus 3 ~~~~l~w~v~~~~~~k~~fiG~~al~~~~~~g~~~~lvgl~~~~~-~~~~g~~v~~~~g~~vG~vTS~~~SP~l~~~I~~ 81 (555)
.-++|+|.|+++ |+ |+|||++++++.. ++|++|||.+++. ++++|++|+. +|+.||+|||++|||+++++|||
T Consensus 250 ~e~~l~~~V~~~---Kg-yiGqe~lar~~~~-~~rrlv~l~~~~~~~~~~g~~v~~-~g~~vG~vtS~~~sp~~g~~ial 323 (364)
T 1wos_A 250 FEVGLSWVVKLN---KD-FVGKEALLKAKEK-VERKLVALELSGKRIARKGYEVLK-NGERVGEITSGNFSPTLGKSIAL 323 (364)
T ss_dssp GGGTCGGGCCTT---SC-CTTHHHHHHHHHT-CCEEEEEEEESSSCCCCTTCEEEE-TTEEEEEEEEEEEETTTTEEEEE
T ss_pred HHCCcccccCCC---CC-CcCHHHHHHHHhc-cCeEEEEEEECCCcCCCCCCEEEE-CCeEEEEEEeceecCcCCceEEE
Confidence 358999999985 45 9999999999998 9999999999985 6799999994 89999999999999999999999
Q ss_pred EEecCCccCCCCEEEEEECC-eEEeEEEEeCCCccCcccc
Q psy4854 82 GYIEPAYSKVGVELWVRVRD-KRVDVKVTKMPFVKSNYYT 120 (555)
Q Consensus 82 a~v~~~~~~~g~~~~v~~~~-~~~~a~v~~~Pf~~~~~~~ 120 (555)
|||+.+ +++|+++.|++++ +.++|+|+++||++++++|
T Consensus 324 a~v~~~-~~~g~~l~v~~~~~~~~~a~v~~~Pf~~~~~~~ 362 (364)
T 1wos_A 324 ALVSKS-VKIGDQLGVVFPGGKLVEALVVKKPFYRGSVRR 362 (364)
T ss_dssp EEEETT-CCTTCEEEEEETTTEEEEEEEECSCSCCCSCC-
T ss_pred EEEccc-cCCCCEEEEEeCCCEEEEEEEEccCCCCccccc
Confidence 999999 8999999999999 9999999999999987654
No 20
>1vlo_A Aminomethyltransferase; NP417381, tetrahydrofolat dependent) of glycine cleavage system, structural genomics, protein structure initiative; HET: MSE; 1.70A {Escherichia coli K12} SCOP: b.44.2.1 d.250.1.1 PDB: 3a8j_A* 3a8i_A* 3a8k_A*
Probab=99.80 E-value=1.1e-19 Score=190.50 Aligned_cols=108 Identities=26% Similarity=0.353 Sum_probs=98.2
Q ss_pred cccceeeeeccccCCCC--CCCcHHHHHHHHHcCCCeEEEEEEeCCC-CCCCCCEEEcCC--Cc-EEEEEeeccccCCCC
Q psy4854 3 IYSRLLIFPGKRRRETG--GFPGASIIQSQIKSGVSRKRTGFTSTGV-PIRPGYEIFNAN--DQ-RVGAITSGCPSPSLK 76 (555)
Q Consensus 3 ~~~~l~w~v~~~~~~k~--~fiG~~al~~~~~~g~~~~lvgl~~~~~-~~~~g~~v~~~~--g~-~vG~vTS~~~SP~l~ 76 (555)
.-++|+|+|+++ |+ ||||||+|++++..|+. |+|||.+++. ++++|++|+..+ |+ .||+||||+|||+++
T Consensus 259 ~EagL~~~V~~~---Kg~~cfiGqE~lar~~~~G~~-rlv~l~~~~~~~~~~g~~v~~~~~~g~~~vG~VtS~~~sp~lg 334 (381)
T 1vlo_A 259 LAANMGWTIAWE---PADRDFIGREALEVQREHGTE-KLVGLVMTEKGVLRNELPVRFTDAQGNQHEGIITSGTFSPTLG 334 (381)
T ss_dssp GGTTCGGGCCCC---STTCCCTTHHHHHHHHHHCCC-EEEEEEECSSSCCCTTCEEEEECTTCCEEEEEEEEEEEETTTT
T ss_pred hhCCccceeECC---CCCCCCcCHHHHHHHHhcCCC-EEEEEEECCCcCCCCCCEEEECCCCCCeeEEEEEEeeeCCCCC
Confidence 357999999985 45 99999999999999999 9999999985 679999998422 78 999999999999999
Q ss_pred CeeEEEEecCCccCCCCEEEEEECCeEEeEEEEeCCCccCc
Q psy4854 77 KNIAMGYIEPAYSKVGVELWVRVRDKRVDVKVTKMPFVKSN 117 (555)
Q Consensus 77 ~~I~~a~v~~~~~~~g~~~~v~~~~~~~~a~v~~~Pf~~~~ 117 (555)
++||||||+.+ +|++++|+++|+.++|+|+++|||++.
T Consensus 335 ~~iala~v~~~---~g~~l~v~~~g~~~~a~v~~~Pf~~~~ 372 (381)
T 1vlo_A 335 YSIALARVPEG---IGETAIVQIRNREMPVKVTKPVFVRNG 372 (381)
T ss_dssp EEEEEEEECTT---CCSEEEEEETTEEEEEEEECSCCEETT
T ss_pred ceEEEEEEEcC---CCCEEEEEECCEEEEEEEecCCCCCCC
Confidence 99999999988 899999999999999999999999873
No 21
>3ttg_A Putative aminomethyltransferase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; 2.00A {Leptospirillum rubarum}
Probab=99.80 E-value=5.2e-20 Score=191.34 Aligned_cols=105 Identities=24% Similarity=0.354 Sum_probs=95.2
Q ss_pred cccee-eeeccccCCCCCCCcHHHHHHHHHcC-CCeEEEEEEeCCC-CCCCCCEEEc---CCCcEEEEEeeccccCCCCC
Q psy4854 4 YSRLL-IFPGKRRRETGGFPGASIIQSQIKSG-VSRKRTGFTSTGV-PIRPGYEIFN---ANDQRVGAITSGCPSPSLKK 77 (555)
Q Consensus 4 ~~~l~-w~v~~~~~~k~~fiG~~al~~~~~~g-~~~~lvgl~~~~~-~~~~g~~v~~---~~g~~vG~vTS~~~SP~l~~ 77 (555)
-++|. |+|++ +|+||||||+|++++..| ++|++|||.+++. ++++|++|+. .+|+.||+|||++|||++++
T Consensus 245 Eagl~~~~V~f---~KgcfiGqE~lar~~~~G~~~rrlv~l~~~~~~~~~~g~~v~~~~~~~g~~vG~VtS~~~sp~lg~ 321 (355)
T 3ttg_A 245 EAGLDSVGVSY---NKGCYVGQEPVTRLKFQGHLNRSLAGFRLEGGPFPKMEFPVTLFNPKDGNEAGILTRTSSSDILGS 321 (355)
T ss_dssp TTTCHHHHCCS---SSCCCTTHHHHHHHHHTSCCCEEEEEEEECC---CCSCSSEEEECTTTCCEEEEEEEEEEETTTTE
T ss_pred HcCCCCCeEEC---CCCCccCHHHHHHHHhcCCCceEEEEEEECCCCCCCCCCEEEeccCCCCceEEEEEEeeECCCCCC
Confidence 46888 99998 468999999999999988 9999999999986 6799999983 28899999999999999999
Q ss_pred eeEEEEecCCccCCCCEEEEEECCeEEeEEEEeCCCc
Q psy4854 78 NIAMGYIEPAYSKVGVELWVRVRDKRVDVKVTKMPFV 114 (555)
Q Consensus 78 ~I~~a~v~~~~~~~g~~~~v~~~~~~~~a~v~~~Pf~ 114 (555)
+||||||+.+++++|++|.| |+.++|+|+++|||
T Consensus 322 ~iaLa~v~~~~~~~g~~l~v---g~~~~a~v~~~Pf~ 355 (355)
T 3ttg_A 322 GIGLGYIKRNFSENGTELLL---PDAQLVRVHSLPFV 355 (355)
T ss_dssp EEEEEEEEGGGCSTTCEEEC---TTCCEEEEECSCCC
T ss_pred EEEEEEEehhhcCCCCEEEe---CCeeeEEEeCCCCC
Confidence 99999999999999999987 77899999999997
No 22
>1pj5_A N,N-dimethylglycine oxidase; channelling, FAD binding, folate binding, amine oxidase, oxidoreductase; HET: FAD; 1.61A {Arthrobacter globiformis} SCOP: b.44.2.1 c.3.1.2 d.16.1.5 d.250.1.1 PDB: 1pj6_A* 1pj7_A* 3gsi_A*
Probab=99.78 E-value=1.9e-19 Score=207.43 Aligned_cols=111 Identities=19% Similarity=0.227 Sum_probs=102.2
Q ss_pred cccceeeeeccccCCCCCCCcHHHHHHHHHcCCCeEEEEEEeCC-C-CCCCCCEEEcCCCcEEEEEeeccccCCCCCeeE
Q psy4854 3 IYSRLLIFPGKRRRETGGFPGASIIQSQIKSGVSRKRTGFTSTG-V-PIRPGYEIFNANDQRVGAITSGCPSPSLKKNIA 80 (555)
Q Consensus 3 ~~~~l~w~v~~~~~~k~~fiG~~al~~~~~~g~~~~lvgl~~~~-~-~~~~g~~v~~~~g~~vG~vTS~~~SP~l~~~I~ 80 (555)
+-++|+|+|+++ |+||||||+|++++..|++|+||||.+++ . +++.|++|+ .+|+.||+||||+|||+++++||
T Consensus 713 ~e~~l~~~v~~~---kg~f~G~e~~~r~~~~g~~rrlv~l~~~~~~~~~~~g~~v~-~~g~~vG~vts~~~sp~~~~~ia 788 (830)
T 1pj5_A 713 FEAGLGFAVKMA---KESFIGKGALEGRTEEASARRLRCLTIDDGRSIVLGKEPVF-YKEQAVGYVTSAAYGYTVAKPIA 788 (830)
T ss_dssp TTTTCGGGCCTT---SSCCTTHHHHTTCCSTTCSEEEEEEEETTSCCCCCSCCEEE-ETTEEEEECCSEEEETTTTEEEE
T ss_pred HHCCCcCeeeCC---CCCCCCHHHHHHHHhcCCCeEEEEEEEeCCCCCCCCCCEEe-eCCeEEEEEecceeccccCceEE
Confidence 358999999984 57999999999999999999999999987 3 568899998 58999999999999999999999
Q ss_pred EEEecCCccCCCCEEEEEECCeEEeEEEEeCCCccCcc
Q psy4854 81 MGYIEPAYSKVGVELWVRVRDKRVDVKVTKMPFVKSNY 118 (555)
Q Consensus 81 ~a~v~~~~~~~g~~~~v~~~~~~~~a~v~~~Pf~~~~~ 118 (555)
||||+.++++ |++++|+++|+.++|+|+++|||++.-
T Consensus 789 la~v~~~~~~-g~~~~v~~~~~~~~a~v~~~pf~~~~~ 825 (830)
T 1pj5_A 789 YSYLPGTVSV-GDSVDIEYFGRRITATVTEDPLYDPKM 825 (830)
T ss_dssp EEEEETTCCT-TCEEEEEETTEEEEEEEECSCSSCTTC
T ss_pred EEEechhhcC-CCEEEEEECCEEEEEEEEcCCCcCCcc
Confidence 9999999988 999999999999999999999998743
No 23
>2gag_A Heterotetrameric sarcosine oxidase alpha-subunit; flavoenzyme, electron transfer, folate-ME enzyme, oxidoreductase; HET: NAD FAD FMN; 1.85A {Stenotrophomonas maltophilia} PDB: 2gah_A* 1x31_A* 1vrq_A* 3ad7_A* 3ad8_A* 3ad9_A* 3ada_A*
Probab=99.68 E-value=4.2e-17 Score=190.33 Aligned_cols=113 Identities=18% Similarity=0.211 Sum_probs=99.7
Q ss_pred cccceeeeeccccCCCCCCCcHHHHHHHHHcC-CCeEEEEEEeCC--CCCCCCCEEEcCCC--------cEEEEEeeccc
Q psy4854 3 IYSRLLIFPGKRRRETGGFPGASIIQSQIKSG-VSRKRTGFTSTG--VPIRPGYEIFNAND--------QRVGAITSGCP 71 (555)
Q Consensus 3 ~~~~l~w~v~~~~~~k~~fiG~~al~~~~~~g-~~~~lvgl~~~~--~~~~~g~~v~~~~g--------~~vG~vTS~~~ 71 (555)
.-++|+|+|+++| +||||++|++++..| ++|+||||.+++ .++++|++|+. +| +.||+||||+|
T Consensus 839 ~e~gl~~~V~~~K----~fiGqe~l~r~~~~g~~rrrlv~l~~~~~~~~~~~g~~i~~-~g~~~~~~~~~~vG~vtS~~~ 913 (965)
T 2gag_A 839 QDAGMEWVVSKLK----DFIGNRSYSRADNAREDRKQLVSVLPVDKSLRLPEGAALVA-SDALASEGITPMEGWVTSSYD 913 (965)
T ss_dssp TTTTCGGGSCSSS----CCTTGGGGGSHHHHCSSCEEEEEEEESSTTCCCCTTCEEEE-TTCCCBTTBCCCCEEEEEEEE
T ss_pred HHCCchhhcCCCC----CcCCHHHHHHHHhcCCCceEEEEEEEeCCCCCCCCCCEEEE-CCccccccCCcceEEEEeeeE
Confidence 3579999999854 699999999998876 566899999987 36799999984 55 38999999999
Q ss_pred cCCCCCeeEEEEecCCccCCCCEEEEEECCeEEeEEEEeCCCccCcccc
Q psy4854 72 SPSLKKNIAMGYIEPAYSKVGVELWVRVRDKRVDVKVTKMPFVKSNYYT 120 (555)
Q Consensus 72 SP~l~~~I~~a~v~~~~~~~g~~~~v~~~~~~~~a~v~~~Pf~~~~~~~ 120 (555)
||+++++||||||+.+++++|+++.|+++++.++|+|+++|||+++-.|
T Consensus 914 sp~lg~~iala~v~~~~~~~g~~~~v~~~~~~~~a~v~~~pf~~~~~~r 962 (965)
T 2gag_A 914 SPNLGRTFGLALIKNGRNRIGEVLKTPVGDQLVDVVVSETVLYDPEGSR 962 (965)
T ss_dssp ETTTTEEEEEEEEETGGGCTTCEEEEEETTEEEEEEEECSCCSSTTCTT
T ss_pred cCCCCceEEEEEEChhhcCCCCEEEEEECCEEEEEEEEccCCcCCCCcc
Confidence 9999999999999999999999999999999999999999999875433
No 24
>1vly_A SPOT PR51, unknown protein from 2D-PAGE; structural genomics, joint center for structural genomics, J protein structure initiative, PSI; HET: MSE; 1.30A {Escherichia coli} SCOP: b.44.2.1 d.250.1.1 PDB: 1nrk_A
Probab=99.64 E-value=2.6e-16 Score=162.51 Aligned_cols=106 Identities=12% Similarity=0.112 Sum_probs=92.1
Q ss_pred cccee--eeeccccCCCCCCCcHHHHHHHHHcC-CCeEEEEEEeCC-CCCCCCCEEEc-C--CCcEEEEEeeccccCCCC
Q psy4854 4 YSRLL--IFPGKRRRETGGFPGASIIQSQIKSG-VSRKRTGFTSTG-VPIRPGYEIFN-A--NDQRVGAITSGCPSPSLK 76 (555)
Q Consensus 4 ~~~l~--w~v~~~~~~k~~fiG~~al~~~~~~g-~~~~lvgl~~~~-~~~~~g~~v~~-~--~g~~vG~vTS~~~SP~l~ 76 (555)
-++|+ |+|+++ |+||+|||++++++..| ++|+++.+..++ .++++|++|++ . +|+.||+||||+||| ++
T Consensus 225 Eagl~~l~~V~f~---KgcyiGqE~lar~~~~G~~rr~l~~l~~~~~~~~~~g~~v~~~~~~~g~~vG~VtS~~~~~-~g 300 (338)
T 1vly_A 225 ATNLQALGGISFK---KGCYTGQEMVARAKFRGANKRALWLLAGSASRLPEAGEDLELKMGENWRRTGTVLAAVKLE-DG 300 (338)
T ss_dssp GGTGGGTTCCCSS---SCCCTTHHHHHHTTSTTSCCEEEEEEEECCSSCCCTTCCEEEEETTEEEEECEEEEEEECT-TS
T ss_pred hcCccccCCCcCC---CcccCCHHHHHHHHhcCCCceEEEEEecCCCCCCCCCCEeEeccCCCCccceEEEEEEECC-CC
Confidence 57888 999984 57999999999999888 577777777765 46799999973 2 348999999999999 99
Q ss_pred CeeEEEEecCCccCCCCEEEEEECCeEEeEEEEeCCCccC
Q psy4854 77 KNIAMGYIEPAYSKVGVELWVRVRDKRVDVKVTKMPFVKS 116 (555)
Q Consensus 77 ~~I~~a~v~~~~~~~g~~~~v~~~~~~~~a~v~~~Pf~~~ 116 (555)
++||||||+.++ .+|+++.| +++..+|+|+++||+.+
T Consensus 301 ~~iala~v~~~~-~~g~~l~v--~g~~~~a~v~~~Pf~~~ 337 (338)
T 1vly_A 301 QVVVQVVMNNDM-EPDSIFRV--RDDANTLHIEPLPYSLE 337 (338)
T ss_dssp CEEEEEEEETTC-CTTCCEES--TTCSSCEEEECCSSCCC
T ss_pred CEEEEEEEeccc-CCCCeEEE--CCCCceeEEeCCCCCCC
Confidence 999999999998 88999888 89999999999999865
No 25
>2gag_C Heterotetrameric sarcosine oxidase gamma-subunit; flavoenzyme, electron transfer, folate-ME enzyme, oxidoreductase; HET: NAD FAD FMN; 1.85A {Stenotrophomonas maltophilia} PDB: 2gah_C*
Probab=99.41 E-value=2.8e-13 Score=130.09 Aligned_cols=168 Identities=17% Similarity=0.113 Sum_probs=116.6
Q ss_pred CCCEEEEEccCCCeEEEEEcCCCH---HHHHhhccccCCCCCcccceEeeeecCccEEEEecCccCCCeEEEEecCCcHH
Q psy4854 331 GKDIHLQFLSAEERGLIAVQGPLS---STILQRHTDLDLSSLYFMTSRPCTIAGIPCTLTRAGYTGEDGVEISVPGEQCT 407 (555)
Q Consensus 331 ~~~V~i~dvs~~~~~~i~v~GP~A---~~vL~~l~~~dl~~l~~~~~~~~~i~g~~v~i~R~~~~ge~G~eL~~~~~~a~ 407 (555)
+..|.|.|+| .++.+.|.||++ .+.|+.+++.++++ +.+.... . ..++++.| .|++.|.|+++. ..
T Consensus 29 r~~vglfDvS--hmg~~~v~G~~a~~~l~~l~~~~g~~l~~-~~g~v~~-~--~dDl~v~r---l~~d~~llv~na--~~ 97 (210)
T 2gag_C 29 AGRVELREIA--FTTQISLRCAPGTQAHAALAAATGAGLPA-KVGEVAG-E--AQGTAVLW---LAPDEFLATSAE--NT 97 (210)
T ss_dssp TTTBEEEECC--SCEEEEEECCTTSHHHHHHHHHHSSCCCC-STTBCEE-C--TTSCEEEE---EETTEEEEEESS--CT
T ss_pred cCcEEEEECC--CCcEEEEEeCChhHHHHHHHHHhCcCCCC-CCCEEEE-c--cCCEEEEE---EcCCEEEEEeCc--HH
Confidence 4679999999 999999999995 45566666665543 2222100 1 22588889 678899998876 23
Q ss_pred HHHHHHHcCCCeeecCchhhHhhhccCCCCCCcccccccccccccccCCceeEEeccCCcEEEEEEeecCccceEeeccc
Q psy4854 408 HIVEALLSDEDVKLAGLGARDSLSGDITLNTPVPHGSLKLSNDRFKSLGKDIHLQFLSPEERGLIAVQGPLSSTILQRHT 487 (555)
Q Consensus 408 ~l~~~L~~ag~~~~~G~~a~~~lR~dl~~~~P~E~gl~~~v~~~K~~iG~eal~~~~~~~lv~l~~~~gp~a~~v~~~~~ 487 (555)
..++.|.+. + .+..+.+.+.+..+..|.+ |||.+++|+.+.+
T Consensus 98 ~d~~~l~~~---------------------------l----------~~~~v~v~d~s~~~a~lal-qGP~A~~vL~~l~ 139 (210)
T 2gag_C 98 ELGGVLSAA---------------------------L----------GDAPGQVVDLSANRSVLEL-TGPDAPLVLRKSC 139 (210)
T ss_dssp THHHHHHHH---------------------------H----------TTSSSEEEECTTTBCCEEE-ESTTHHHHHTTTC
T ss_pred HHHHHHHHh---------------------------c----------CcCCEEEEECCCCEEEEEE-ECHhHHHHHHhhC
Confidence 344444321 0 0111222333234555555 9999999998887
Q ss_pred ccceee--EEEEeeeeecccCeeEEEEeccccCCceEEEEeCCcchHHHHHhccc---CCCCcccccc
Q psy4854 488 DLDLSS--LYFMTSRPCTIAGIPCTLTRAGYTGEDGVEISVPGEQCTHIVEALLS---DEDVKLAGLG 550 (555)
Q Consensus 488 ~~~~t~--~~~~~~~~~~~~~i~~~~~r~~y~ge~g~EI~i~~~~~~~v~~~l~~---~~g~~~~G~~ 550 (555)
..+++. ++|+....+.++++++.+.| +||+||||+++.+.+..+|+.|++ ++|++|+|+.
T Consensus 140 ~~dl~~~~~~~~~~~~~~v~g~~v~v~R---tGEdGfEI~v~~~~A~~lw~~Ll~a~~~~G~~~~~~~ 204 (210)
T 2gag_C 140 PADLHPRAFAVNQAIVTSVANIPVLLWR---TGEQAWRIMPRASFTEHTVHWLVDAMSEFASEAVILE 204 (210)
T ss_dssp CSCCSTTTSCTTBEEEEEETTEEEEEEE---EETTEEEEEEBGGGHHHHHHHHHHHHHGGGC------
T ss_pred cccCCcccCCCCcEEEEEECCEEEEEEE---eCCCEEEEEEEHHHHHHHHHHHHHHHHHcCCeEEEee
Confidence 667774 88888888889999999999 689999999999999999999999 8899999875
No 26
>1x31_C Sarcosine oxidase gamma subunit; heterotetrameric sarcosine oxidase, flavoenzyme, oxidoreduct; HET: FAD NAD FMN; 2.15A {Corynebacterium SP} PDB: 1vrq_C* 3ad7_C* 3ad8_C* 3ad9_C* 3ada_C*
Probab=99.30 E-value=3.5e-12 Score=122.14 Aligned_cols=166 Identities=16% Similarity=0.134 Sum_probs=117.5
Q ss_pred CCCEEEEEccCCCeEEEEEcCCCHHHHH---hhccccCCCCCcccceEeeeecCccEEEEecCccCCCeEEEEecCCcHH
Q psy4854 331 GKDIHLQFLSAEERGLIAVQGPLSSTIL---QRHTDLDLSSLYFMTSRPCTIAGIPCTLTRAGYTGEDGVEISVPGEQCT 407 (555)
Q Consensus 331 ~~~V~i~dvs~~~~~~i~v~GP~A~~vL---~~l~~~dl~~l~~~~~~~~~i~g~~v~i~R~~~~ge~G~eL~~~~~~a~ 407 (555)
..+|.|.|+| .++.+.|.||+|.++| +.+++.++++ +.+..... ..++++.| .+++.|.|.++. ..
T Consensus 27 ~~~vglfDvS--hmg~~~v~G~~a~~~l~~l~~~~~~~l~~-~~g~~~~~---~dDl~v~r---l~~d~~llv~na--~~ 95 (206)
T 1x31_C 27 ERAVTLREVA--FTTQLGLRAVPGSTGHAALAAATGVGLPA-AVGEVAGD---VSGTAVLW---LGPDEFLLAAEE--NP 95 (206)
T ss_dssp TTCBEEEECC--SCEEEEEECCTTSHHHHHHHHHSSSCCCC-STTBEEEC---TTSCEEEE---EETTEEEEEESS--CT
T ss_pred CCcEEEEECC--CCcEEEEEeCChhHHHHHHHHHhCcCCCC-CCCEEEEe---cCCEEEEE---EcCCEEEEEcCc--hH
Confidence 3679999999 9999999999998544 4444444432 12222110 22478889 678889999876 34
Q ss_pred HHHHHHHcCCCeeecCchhhHhhhccCCCCCCcccccccccccccccCCceeEEeccCCcEEEEEEeecCccceEeeccc
Q psy4854 408 HIVEALLSDEDVKLAGLGARDSLSGDITLNTPVPHGSLKLSNDRFKSLGKDIHLQFLSPEERGLIAVQGPLSSTILQRHT 487 (555)
Q Consensus 408 ~l~~~L~~ag~~~~~G~~a~~~lR~dl~~~~P~E~gl~~~v~~~K~~iG~eal~~~~~~~lv~l~~~~gp~a~~v~~~~~ 487 (555)
..++.|.++ + .+..+.+.+.+.....|.+ |||.+++|+.+.+
T Consensus 96 ~d~~~l~~~---------------------------l----------~~~~v~v~d~s~~~a~lal-qGP~A~~vL~~l~ 137 (206)
T 1x31_C 96 ALLDTLQGA---------------------------L----------GQEPGQVLDLSANRSVLQL-EGPAAALVLRKSC 137 (206)
T ss_dssp HHHHHHHHH---------------------------H----------TTSSSEEEECTTTBCCEEE-ESTTHHHHHTTTC
T ss_pred HHHHHHHHh---------------------------c----------CcCcEEEEECCCCEEEEEE-ECHhHHHHHHhhC
Confidence 455554331 0 0111222233233455555 9999999998887
Q ss_pred ccceee--EEEEeeeeecccCeeEEEEeccccCCceEEEEeCCcchHHHHHhccc---CCCCcccc
Q psy4854 488 DLDLSS--LYFMTSRPCTIAGIPCTLTRAGYTGEDGVEISVPGEQCTHIVEALLS---DEDVKLAG 548 (555)
Q Consensus 488 ~~~~t~--~~~~~~~~~~~~~i~~~~~r~~y~ge~g~EI~i~~~~~~~v~~~l~~---~~g~~~~G 548 (555)
..+++. ++|+....+.++++++.+.|++ |+||||+++.+.+..+|+.|++ ++|+.+..
T Consensus 138 ~~dl~~~~~~~~~~~~~~v~g~~v~i~Rtg---EdGfEI~v~~~~A~~lw~~L~~ag~e~g~~~~~ 200 (206)
T 1x31_C 138 PADLHPREFGVNRAITTSLANIPVLLWRTG---EQSWRILPRASFTEHTVHWLIDAMSEFSAAEVA 200 (206)
T ss_dssp CSCCCTTTSCTTEEEEEEETTEEEEEEEEE---TTEEEEECBGGGHHHHHHHHHHHHGGGGSCCCC
T ss_pred cccCCcccCCCCcEEEEEEcCeEEEEEEcC---CCeEEEEEEHHHHHHHHHHHHHHHHHhCCCccc
Confidence 667775 8888888888899999999987 9999999999999999999999 67776643
No 27
>2bry_A NEDD9 interacting protein with calponin homology and LIM domains; transport, coiled coil, cytoskeleton, FAD, flavoprotein, metal-binding, zinc; HET: FAD; 1.45A {Mus musculus} PDB: 2c4c_A* 2bra_A*
Probab=96.48 E-value=0.00034 Score=75.49 Aligned_cols=63 Identities=11% Similarity=-0.023 Sum_probs=51.2
Q ss_pred hHHHHHHHHcCCCCCcccccccCC--CC--CCCCchhhhhhcccc----ccccccCCCCCCCCCCCCCcChHHHH
Q psy4854 140 GVELWVRVRDKRVDVKVTKMPFLK--SN--YHTPPKYFLKFLSFF----SGLTFVFSPGSSPSAEQRTPLYDLHL 206 (555)
Q Consensus 140 g~~~a~~~~~g~~~~~~~~~d~~r--~~--~~~~~~~~~~~~~e~----~~~~~p~~~~~~~r~~r~spl~~~~~ 206 (555)
|+.||.| ++|.++.+++ +.+| .. .+++++| .+|..|. |.++||+.+++++|++|+||||+.+.
T Consensus 425 ~~~l~~~-~~g~~~~~~l--~~r~~~~~~l~~~~~~~-~~~~~~~~~~~~~~~~p~~~~~~~r~~~~~~l~~~~~ 495 (497)
T 2bry_A 425 AWMVKRW-AEGAGPLEVL--AERESLYQLLSQTSPEN-MHRNVAQYGLDPATRYPNLNLRAVTPNQVQDLYDMMD 495 (497)
T ss_dssp HHHHHHH-HTTCCHHHHH--HHHHHHHTTGGGCCTTT-SCSCGGGCCSSGGGTSSSCCTTSSCGGGGGGGEEECS
T ss_pred HHHHHHH-hCCCCccchh--hhHHHHhhhhhhcCHHH-HhhhHHhhcCCCcCcCCCcccccccCCccCccccccC
Confidence 4677888 7899999998 8888 22 2567788 8888887 55569999999999999999998763
No 28
>3geh_A MNME, tRNA modification GTPase MNME; G protein, U34, GTP-binding, HYDR magnesium, metal-binding, nucleotide-binding, potassium, TR processing; HET: GDP FON; 3.20A {Nostoc SP}
Probab=82.23 E-value=3.8 Score=43.25 Aligned_cols=66 Identities=11% Similarity=0.077 Sum_probs=51.9
Q ss_pred CCceEEEEEcccHHHHHhhcccc-CCCCCCCCceEEeeeecC-CcceEEEEEEEEe-------cCCeEEEEeccc
Q psy4854 246 SHMLQTVVTGKHREEWLESICVA-DVHELDPGKGTLSLFTNE-QGGIQDDLIVTKT-------LEDSLFLVSNAS 311 (555)
Q Consensus 246 S~~~~i~v~G~da~~fLq~l~t~-dv~~l~~G~~~yt~~ln~-~G~i~~d~~v~r~-------~~d~~~l~~~~~ 311 (555)
+.-+.++|+||+|.+.++.++.. .....++.++.|..+.++ +|.++|+..|..+ |||-.=+-+-++
T Consensus 22 ~~i~iiRiSG~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iD~~l~~~f~~p~s~TgEd~~E~~~HGg 96 (462)
T 3geh_A 22 GSVGIVRVSGSQAIAIAQTLFDAPGKQVWESHRILYGYIRHPQTRQIVDEALLLLMKAPRSYTREDVVEFHCHGG 96 (462)
T ss_dssp CSCEEEEEESTTHHHHHHHHEECCSCCCCCTTEEEEEEECCSSSCCCCEEEEEEEECTTCSSSSSCEEEEEECCS
T ss_pred ceEEEEEeEchhHHHHHHHHhCCCCccCCCCcEEEEEecccCCCCCCcceEEEEEEcCCCCCcCCceEEEECCCC
Confidence 45678899999999999999864 334456888999999984 6889999999887 777665555444
No 29
>3geh_A MNME, tRNA modification GTPase MNME; G protein, U34, GTP-binding, HYDR magnesium, metal-binding, nucleotide-binding, potassium, TR processing; HET: GDP FON; 3.20A {Nostoc SP}
Probab=79.77 E-value=8.2 Score=40.66 Aligned_cols=76 Identities=21% Similarity=0.155 Sum_probs=51.3
Q ss_pred CeEEEEEcCCCHHHHHhhcccc-CCCCCcccceEeeeecC----c---cEEEEec----CccCCCeEEEEecCCc--HHH
Q psy4854 343 ERGLIAVQGPLSSTILQRHTDL-DLSSLYFMTSRPCTIAG----I---PCTLTRA----GYTGEDGVEISVPGEQ--CTH 408 (555)
Q Consensus 343 ~~~~i~v~GP~A~~vL~~l~~~-dl~~l~~~~~~~~~i~g----~---~v~i~R~----~~~ge~G~eL~~~~~~--a~~ 408 (555)
.-++|.|+||+|.+++++++.. ++...+..+..+..+-. . ++.+... +||||+-.||+|.... ...
T Consensus 23 ~i~iiRiSG~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iD~~l~~~f~~p~s~TgEd~~E~~~HGg~~v~~~ 102 (462)
T 3geh_A 23 SVGIVRVSGSQAIAIAQTLFDAPGKQVWESHRILYGYIRHPQTRQIVDEALLLLMKAPRSYTREDVVEFHCHGGIIAVQQ 102 (462)
T ss_dssp SCEEEEEESTTHHHHHHHHEECCSCCCCCTTEEEEEEECCSSSCCCCEEEEEEEECTTCSSSSSCEEEEEECCSSSHHHH
T ss_pred eEEEEEeEchhHHHHHHHHhCCCCccCCCCcEEEEEecccCCCCCCcceEEEEEEcCCCCCcCCceEEEECCCCHHHHHH
Confidence 3588999999999999999853 23333444444444422 1 2444443 7999999999997544 456
Q ss_pred HHHHHHcCCC
Q psy4854 409 IVEALLSDED 418 (555)
Q Consensus 409 l~~~L~~ag~ 418 (555)
+.+.|.+.|.
T Consensus 103 ~l~~~~~~g~ 112 (462)
T 3geh_A 103 VLQLCLESGA 112 (462)
T ss_dssp HHHHHHHTTC
T ss_pred HHHHHHHCCC
Confidence 8888888764
No 30
>3gee_A MNME, tRNA modification GTPase MNME; G protein, cytoplasm, GTP- binding, hydrolase, magnesium, metal-binding, nucleotide- binding, potassium; HET: GDP FON; 2.95A {Chlorobium tepidum} PDB: 3gei_A*
Probab=78.66 E-value=5.8 Score=41.98 Aligned_cols=65 Identities=8% Similarity=0.087 Sum_probs=49.8
Q ss_pred CCceEEEEEcccHHHHHhhcccc-----CCCCCCCCceEEeeeecCCcceEEEEEEEEe-------cCCeEEEEeccc
Q psy4854 246 SHMLQTVVTGKHREEWLESICVA-----DVHELDPGKGTLSLFTNEQGGIQDDLIVTKT-------LEDSLFLVSNAS 311 (555)
Q Consensus 246 S~~~~i~v~G~da~~fLq~l~t~-----dv~~l~~G~~~yt~~ln~~G~i~~d~~v~r~-------~~d~~~l~~~~~ 311 (555)
+.-+.++|+||+|.+.++.++.. ++...++..+.|..+.++ |.++|+..+..+ +||-.=+-+-++
T Consensus 28 ~~i~iiRiSG~~a~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~iD~~l~~~f~~P~s~TgEd~~E~~~HGg 104 (476)
T 3gee_A 28 GALAIVRISGAGVLDLADRVFRKVHGSGKLAEAAGYTAHFGRLYDG-EEMVDEVIALVFRAPRSFTAEQMVEFTCHGG 104 (476)
T ss_dssp CSEEEEEEESTTHHHHHHHHEEESSSCCCGGGCCTTEEEEEEEESS-SCEEEEEEEEEEBTTBSSSSSCEEEEEEECC
T ss_pred cEEEEEEeechhHHHHHHHHhCcccccccccCCCCCEEEEEEEecC-CcccceEEEEEecCCCCCCCCCeEEEECCCC
Confidence 34578899999999999999864 333346888999999986 899999999876 666555555443
No 31
>3gee_A MNME, tRNA modification GTPase MNME; G protein, cytoplasm, GTP- binding, hydrolase, magnesium, metal-binding, nucleotide- binding, potassium; HET: GDP FON; 2.95A {Chlorobium tepidum} PDB: 3gei_A*
Probab=72.14 E-value=13 Score=39.28 Aligned_cols=75 Identities=13% Similarity=0.108 Sum_probs=49.1
Q ss_pred eEEEEEcCCCHHHHHhhcccc-----CCCCCcccceEeeeec--Cc---cEEEEec----CccCCCeEEEEecCCcH--H
Q psy4854 344 RGLIAVQGPLSSTILQRHTDL-----DLSSLYFMTSRPCTIA--GI---PCTLTRA----GYTGEDGVEISVPGEQC--T 407 (555)
Q Consensus 344 ~~~i~v~GP~A~~vL~~l~~~-----dl~~l~~~~~~~~~i~--g~---~v~i~R~----~~~ge~G~eL~~~~~~a--~ 407 (555)
-++|.|+||+|.+++++++.. ++...+.....+..+- +. ++.+... +||||+-.||+|....+ .
T Consensus 30 i~iiRiSG~~a~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iD~~l~~~f~~P~s~TgEd~~E~~~HGg~~v~~ 109 (476)
T 3gee_A 30 LAIVRISGAGVLDLADRVFRKVHGSGKLAEAAGYTAHFGRLYDGEEMVDEVIALVFRAPRSFTAEQMVEFTCHGGPVVVG 109 (476)
T ss_dssp EEEEEEESTTHHHHHHHHEEESSSCCCGGGCCTTEEEEEEEESSSCEEEEEEEEEEBTTBSSSSSCEEEEEEECCHHHHH
T ss_pred EEEEEeechhHHHHHHHHhCcccccccccCCCCCEEEEEEEecCCcccceEEEEEecCCCCCCCCCeEEEECCCCHHHHH
Confidence 588999999999999999853 1222233333333332 21 2444433 79999999999976543 5
Q ss_pred HHHHHHHcCCC
Q psy4854 408 HIVEALLSDED 418 (555)
Q Consensus 408 ~l~~~L~~ag~ 418 (555)
.+.+.|.+.|.
T Consensus 110 ~~l~~~~~~g~ 120 (476)
T 3gee_A 110 RVLRLMLDNGC 120 (476)
T ss_dssp HHHHHHHHTTC
T ss_pred HHHHHHHHCCC
Confidence 67778877764
No 32
>1xzp_A Probable tRNA modification GTPase TRME; GTP-binding, THF-binding, hydrolase; 2.30A {Thermotoga maritima} SCOP: a.24.25.1 c.37.1.8 d.250.1.2 PDB: 1xzq_A* 1xzp_B 1xzq_B*
Probab=64.19 E-value=8.9 Score=40.60 Aligned_cols=63 Identities=13% Similarity=0.124 Sum_probs=48.3
Q ss_pred CCceEEEEEcccHHHHHhhccc-cCCCCCCCCceEEeeeecCCcceEEEEEEEEe-------cCCeEEEEeccc
Q psy4854 246 SHMLQTVVTGKHREEWLESICV-ADVHELDPGKGTLSLFTNEQGGIQDDLIVTKT-------LEDSLFLVSNAS 311 (555)
Q Consensus 246 S~~~~i~v~G~da~~fLq~l~t-~dv~~l~~G~~~yt~~ln~~G~i~~d~~v~r~-------~~d~~~l~~~~~ 311 (555)
+.-+.++|+||+|.+.++.++. .+. .++..+.|..+.| +|.++|+..|... +||..=+-+.++
T Consensus 46 ~~i~iiRiSG~~a~~~~~~~~~~~~~--~~~~~~~~~~~~~-~~~~iDe~~v~~~~~p~Sft~Ed~ve~~~hGg 116 (482)
T 1xzp_A 46 GAIAILRLSGPDSWKIVQKHLRTRSK--IVPRKAIHGWIHE-NGEDVDEVVVVFYKSPKSYTGEDMVEVMCHGG 116 (482)
T ss_dssp CSCEEEEEESSSHHHHHHTTEEESSC--CCBTBCEEEEECC-SSCCCCEEEEEEECTTSSSSSSCEEEEEECSC
T ss_pred ceEEEEEcccHHHHHHHHHHhcCCCC--CCCceEEEEEEec-CCeeeeEEEEEEEeCCCcCCCCCEeeecCcCc
Confidence 3567899999999999999995 233 2688999999999 8999999988765 455444444443
No 33
>3l48_A Outer membrane usher protein PAPC; IG fold, greek KEY, cell outer membrane, fimbrium, transmembrane, transport, transport protein; 2.10A {Escherichia coli} PDB: 2kt6_A
Probab=52.31 E-value=86 Score=25.02 Aligned_cols=62 Identities=16% Similarity=0.267 Sum_probs=42.7
Q ss_pred eEEEEEEe-CCCCCCCCCEEEcCCCcEEEEEeeccccCCCCCeeEEEEecCCccCCCCEEEEEECCeEEeEEEEeCC
Q psy4854 37 RKRTGFTS-TGVPIRPGYEIFNANDQRVGAITSGCPSPSLKKNIAMGYIEPAYSKVGVELWVRVRDKRVDVKVTKMP 112 (555)
Q Consensus 37 ~~lvgl~~-~~~~~~~g~~v~~~~g~~vG~vTS~~~SP~l~~~I~~a~v~~~~~~~g~~~~v~~~~~~~~a~v~~~P 112 (555)
+-++=+.. +|.+++-|..|++.+|+.+|.|--+ |++|+..- .+...|.|.-.++ ..+++. +|
T Consensus 9 ~~ll~l~~~dG~plPfGA~V~d~~g~~~giVG~~----------G~vyl~gl--~~~g~L~V~Wg~~-~~C~i~-lp 71 (94)
T 3l48_A 9 RLFAILRLADGSQPPFGASVTSEKGRELGMVADE----------GLAWLSGV--TPGETLSVNWDGK-IQCQVN-VP 71 (94)
T ss_dssp CEEEEEEETTSCCCCTTCEEECTTCCEEEEBCGG----------GEEEESSC--CTTCEEEEECSSS-EEEEEE-CC
T ss_pred EEEEEEECCCCCcCCCccEEEcCCCceEEEECCC----------CEEEEECC--CCCCEEEEEECCC-CeEEEE-CC
Confidence 34444554 4567888999998778889988776 78999865 3566788876543 345554 44
No 34
>1xzp_A Probable tRNA modification GTPase TRME; GTP-binding, THF-binding, hydrolase; 2.30A {Thermotoga maritima} SCOP: a.24.25.1 c.37.1.8 d.250.1.2 PDB: 1xzq_A* 1xzp_B 1xzq_B*
Probab=26.29 E-value=2.3e+02 Score=29.52 Aligned_cols=72 Identities=24% Similarity=0.310 Sum_probs=46.2
Q ss_pred eEEEEEcCCCHHHHHhhccc-cCCCCCcccceEeeeec--Cc---cEEE--Ee--cCccCCCeEEEEecCCc--HHHHHH
Q psy4854 344 RGLIAVQGPLSSTILQRHTD-LDLSSLYFMTSRPCTIA--GI---PCTL--TR--AGYTGEDGVEISVPGEQ--CTHIVE 411 (555)
Q Consensus 344 ~~~i~v~GP~A~~vL~~l~~-~dl~~l~~~~~~~~~i~--g~---~v~i--~R--~~~~ge~G~eL~~~~~~--a~~l~~ 411 (555)
-++|.|+||+|.+++++++. .++. +.....+..+- +. ++.+ ++ .+||||+-.|+.|.... ...+.+
T Consensus 48 i~iiRiSG~~a~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~iDe~~v~~~~~p~Sft~Ed~ve~~~hGg~~v~~~~l~ 125 (482)
T 1xzp_A 48 IAILRLSGPDSWKIVQKHLRTRSKI--VPRKAIHGWIHENGEDVDEVVVVFYKSPKSYTGEDMVEVMCHGGPLVVKKLLD 125 (482)
T ss_dssp CEEEEEESSSHHHHHHTTEEESSCC--CBTBCEEEEECCSSCCCCEEEEEEECTTSSSSSSCEEEEEECSCHHHHHHHHH
T ss_pred EEEEEcccHHHHHHHHHHhcCCCCC--CCceEEEEEEecCCeeeeEEEEEEEeCCCcCCCCCEeeecCcCcHHHHHHHHH
Confidence 48899999999999999985 2221 22222233322 21 2333 33 37999999999987654 346777
Q ss_pred HHHcCC
Q psy4854 412 ALLSDE 417 (555)
Q Consensus 412 ~L~~ag 417 (555)
.|.+.|
T Consensus 126 ~l~~~g 131 (482)
T 1xzp_A 126 LFLKSG 131 (482)
T ss_dssp HHHTTT
T ss_pred HHHHcC
Confidence 777654
Done!