RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy4854
(555 letters)
>d1v5va2 d.250.1.1 (A:3-312) Glycine cleavage system T protein, GcvT
{Pyrococcus horikoshii [TaxId: 53953]}
Length = 310
Score = 147 bits (372), Expect = 8e-41
Identities = 69/251 (27%), Positives = 120/251 (47%), Gaps = 19/251 (7%)
Query: 197 QRTPLYDLHLSHGGKMVPFAGFSMPVQYGAVSITASHLHTRSKVSVFDVSHMLQTVVTGK 256
+R ++D H H K+ FAG+ MP+ Y SI HL R+ V +FDVSHM + V GK
Sbjct: 4 KRVHIFDWHKEHARKIEEFAGWEMPIWYS--SIKEEHLAVRNAVGIFDVSHMGEIVFRGK 61
Query: 257 HREEWLESICVADVHELDPGKGTLSLFTNEQGGIQDDLIVTKTLEDSLFLVSNASRRKVD 316
++L+ + D+ + GT +L NE+G I+D+ +V + ++ ++ +
Sbjct: 62 DALKFLQYVTTNDISKPPAISGTYTLVLNERGAIKDETLVFNMGNNEYLMICDSDAFEKL 121
Query: 317 MDLMVAAQDRFKSLGKDIHLQFLSAEERGLIAVQGPLSSTILQRHTDLDLSSLYFMTSRP 376
+ + K L + + AVQGP + + + +D++ +++ +R
Sbjct: 122 YAWFTYLKRTIEQFTKLDLEIELKTYDIAMFAVQGPKARDLAKDLFGIDINEMWWFQARW 181
Query: 377 CTIAGIPCTLTRAGYTGEDGVEISVPG--------------EQCTHIVEALLS---DEDV 419
+ GI L+R+GYTGE+G E+ + E+ H+ E +L +
Sbjct: 182 VELDGIKMLLSRSGYTGENGFEVYIEDANPYHPDESKRGEPEKALHVWERILEEGKKYGI 241
Query: 420 KLAGLGARDSL 430
K GLGARD+L
Sbjct: 242 KPCGLGARDTL 252
Score = 48.0 bits (113), Expect = 1e-06
Identities = 30/106 (28%), Positives = 53/106 (50%), Gaps = 17/106 (16%)
Query: 467 EERGLIAVQGPLSSTILQRHTDLDLSSLYFMTSRPCTIAGIPCTLTRAGYTGEDGVEISV 526
+ + AVQGP + + + +D++ +++ +R + GI L+R+GYTGE+G E+ +
Sbjct: 147 YDIAMFAVQGPKARDLAKDLFGIDINEMWWFQARWVELDGIKMLLSRSGYTGENGFEVYI 206
Query: 527 PG--------------EQCTHIVEALLS---DEDVKLAGLGARDSL 555
E+ H+ E +L +K GLGARD+L
Sbjct: 207 EDANPYHPDESKRGEPEKALHVWERILEEGKKYGIKPCGLGARDTL 252
>d1vloa2 d.250.1.1 (A:4-277) Glycine cleavage system T protein, GcvT
{Escherichia coli [TaxId: 562]}
Length = 274
Score = 142 bits (359), Expect = 3e-39
Identities = 74/234 (31%), Positives = 106/234 (45%), Gaps = 11/234 (4%)
Query: 198 RTPLYDLHLSHGGKMVPFAGFSMPVQYGAVSITASHLHTRSKVSVFDVSHMLQTVVTGKH 257
+TPLY+ H G +MV F G+ MP+ YG S H R+ +FDVSHM + G
Sbjct: 1 QTPLYEQHTLCGARMVDFHGWMMPLHYG--SQIDEHHAVRTDAGMFDVSHMTIVDLRGSR 58
Query: 258 REEWLESICVADV-HELDPGKGTLSLFTNEQGGIQDDLIVTKTLEDSLFLVSNASRRKVD 316
E+L + DV GK S N GG+ DDLIV ED LV N++ R+ D
Sbjct: 59 TREFLRYLLANDVAKLTKSGKALYSGMLNASGGVIDDLIVYYFTEDFFRLVVNSATREKD 118
Query: 317 MDLMVAAQDRFKSLGKDIHLQFLSAEERGLIAVQGPLSSTILQRHTDLDLSSLYFMTSRP 376
+ + + F ++ ++ +IAVQGP + +
Sbjct: 119 LSWITQHAEPF-------GIEITVRDDLSMIAVQGPNAQAKAATLFNDAQRQAVEGMKPF 171
Query: 377 CTIAGIPCTLTRAGYTGEDGVEISVPGEQCTHIVEALLSDEDVKLAGLGARDSL 430
+ + GYTGE G EI++P E+ AL+ + VK GLGARD+L
Sbjct: 172 FGVQAGDLFIATTGYTGEAGYEIALPNEKAADFWRALV-EAGVKPCGLGARDTL 224
Score = 46.4 bits (109), Expect = 4e-06
Identities = 27/89 (30%), Positives = 40/89 (44%), Gaps = 1/89 (1%)
Query: 467 EERGLIAVQGPLSSTILQRHTDLDLSSLYFMTSRPCTIAGIPCTLTRAGYTGEDGVEISV 526
++ +IAVQGP + + + + GYTGE G EI++
Sbjct: 137 DDLSMIAVQGPNAQAKAATLFNDAQRQAVEGMKPFFGVQAGDLFIATTGYTGEAGYEIAL 196
Query: 527 PGEQCTHIVEALLSDEDVKLAGLGARDSL 555
P E+ AL+ + VK GLGARD+L
Sbjct: 197 PNEKAADFWRALV-EAGVKPCGLGARDTL 224
>d1pj5a4 d.250.1.1 (A:428-742) N,N-dimethylglycine oxidase domain 3
{Arthrobacter globiformis [TaxId: 1665]}
Length = 315
Score = 130 bits (327), Expect = 2e-34
Identities = 55/264 (20%), Positives = 101/264 (38%), Gaps = 33/264 (12%)
Query: 198 RTPLYDLHLSHGGKMVPFAGFSMPVQYGA--------------------------VSITA 231
+P + H G + G+ P + A A
Sbjct: 5 VSPFHARHKELGAFFLEAGGWERPYWFEANAALLKEMPAEWLPPARDAWSGMFSSPIAAA 64
Query: 232 SHLHTRSKVSVFDVSHMLQTVVTGKHREEWLESICVADVHELDPGKGTLSLFTNEQGGIQ 291
TR+ V+++D++ + + V+G + L+ + AD+ + PG T +L + GG++
Sbjct: 65 EAWKTRTAVAMYDMTPLKRLEVSGPGALKLLQELTTADLAK-KPGAVTYTLLLDHAGGVR 123
Query: 292 DDLIVTKTLEDSLFLVSNASRRKVDMDLMVAAQDRFKSLGKDIHLQFLSAEERGLIAVQG 351
D+ V + ED+ L +N + + Q + S + ++ + I + G
Sbjct: 124 SDITVARLSEDTFQLGANGNIDTAYFERAARHQTQSGSATDWVQVRDTT-GGTCCIGLWG 182
Query: 352 PLSSTILQR--HTDLDLSSLYFMTSRPCTIAGIPCTLTRAGYTGEDGVEISVPGEQCTHI 409
PL+ ++ + D L + ++ I GIP T R Y GE G E+ + +
Sbjct: 183 PLARDLVSKVSDDDFTNDGLKYFRAKNVVIGGIPVTAMRLSYVGELGWELYTSADNGQRL 242
Query: 410 VEALLS---DEDVKLAGLGARDSL 430
+AL V AG A SL
Sbjct: 243 WDALWQAGQPFGVIAAGRAAFSSL 266
Score = 67.3 bits (163), Expect = 8e-13
Identities = 25/94 (26%), Positives = 37/94 (39%), Gaps = 5/94 (5%)
Query: 467 EERGLIAVQGPLSSTILQR--HTDLDLSSLYFMTSRPCTIAGIPCTLTRAGYTGEDGVEI 524
I + GPL+ ++ + D L + ++ I GIP T R Y GE G E+
Sbjct: 173 GGTCCIGLWGPLARDLVSKVSDDDFTNDGLKYFRAKNVVIGGIPVTAMRLSYVGELGWEL 232
Query: 525 SVPGEQCTHIVEALLS---DEDVKLAGLGARDSL 555
+ + +AL V AG A SL
Sbjct: 233 YTSADNGQRLWDALWQAGQPFGVIAAGRAAFSSL 266
>d1wosa2 d.250.1.1 (A:1-278) Glycine cleavage system T protein, GcvT
{Thermotoga maritima [TaxId: 2336]}
Length = 278
Score = 123 bits (308), Expect = 3e-32
Identities = 81/237 (34%), Positives = 119/237 (50%), Gaps = 11/237 (4%)
Query: 197 QRTPLYDLHLSHGGKMVPFAGFSMPVQYGAVSITASHLHTRSKVSVFDVSHMLQTVVTGK 256
+RTPL++ H+ G KMV FAG+ MP+ Y SI + R V +FDVSHM + +V G
Sbjct: 2 KRTPLFEKHVELGAKMVDFAGWEMPLYYT--SIFEEVMAVRKSVGMFDVSHMGEFLVKGP 59
Query: 257 HREEWLESICVADVHELDPGKGTLSLFTNEQGGIQDDLIVTKTLEDSLFLVSNASRRKVD 316
+++ + D L GK S+ NE GGI DDL+V K D +V NA+ + D
Sbjct: 60 EAVSFIDFLITNDFSSLPDGKAIYSVMCNENGGIIDDLVVYKVSPDEALMVVNAANIEKD 119
Query: 317 MDLMVAAQDRFKSLGKDIHLQFLSAEERGLIAVQGPLSSTILQRHTDLDLSSLYFMTSRP 376
+ + + F +I LIA QGP + LQ + L + + + R
Sbjct: 120 FNWIKSHSKNFDVEVSNISDTT------ALIAFQGPKAQETLQELVEDGLEEIAYYSFRK 173
Query: 377 CTIAGIPCTLTRAGYTGEDGVEISVPGEQCTHIVEAL---LSDEDVKLAGLGARDSL 430
+AG+ ++R GYTGEDG E+ + + + +AL L D + AGLGARD
Sbjct: 174 SIVAGVETLVSRTGYTGEDGFELMLEAKNAPKVWDALMNLLRKIDGRPAGLGARDVC 230
>d1v5va1 b.44.2.1 (A:313-401) Glycine cleavage system T protein,
GcvT {Pyrococcus horikoshii [TaxId: 53953]}
Length = 89
Score = 92.1 bits (229), Expect = 2e-23
Identities = 26/85 (30%), Positives = 41/85 (48%), Gaps = 2/85 (2%)
Query: 37 RKRTGFTSTGVPI-RPGYEIFNANDQRVGAITSGCPSPSLKKNIAMGYIEPAYSKVGVEL 95
RK F I R GY+++ N + +G +TSG SP L I + +++ Y+K G+E+
Sbjct: 1 RKLVHFKMIDKGIPREGYKVYA-NGEMIGEVTSGTLSPLLNVGIGIAFVKEEYAKPGIEI 59
Query: 96 WVRVRDKRVDVKVTKMPFVKSNYYT 120
V +R +R PF Y
Sbjct: 60 EVEIRGQRKKAVTVTPPFYDPKKYG 84
>d1wosa1 b.44.2.1 (A:279-361) Glycine cleavage system T protein,
GcvT {Thermotoga maritima [TaxId: 2336]}
Length = 83
Score = 83.3 bits (206), Expect = 2e-20
Identities = 29/83 (34%), Positives = 40/83 (48%), Gaps = 2/83 (2%)
Query: 37 RKRTGFTSTGVPI-RPGYEIFNANDQRVGAITSGCPSPSLKKNIAMGYIEPAYSKVGVEL 95
RK +G I R GYE+ N +RVG ITSG SP+L K+IA+ + +
Sbjct: 1 RKLVALELSGKRIARKGYEVLK-NGERVGEITSGNFSPTLGKSIALALVSKSVKIGDQLG 59
Query: 96 WVRVRDKRVDVKVTKMPFVKSNY 118
V K V+ V K PF + +
Sbjct: 60 VVFPGGKLVEALVVKKPFYRGSV 82
>d1vloa1 b.44.2.1 (A:278-367) Glycine cleavage system T protein,
GcvT {Escherichia coli [TaxId: 562]}
Length = 90
Score = 79.1 bits (195), Expect = 7e-19
Identities = 25/84 (29%), Positives = 40/84 (47%), Gaps = 7/84 (8%)
Query: 36 SRKRTGFTSTGVPI-RPGYEIF---NANDQRVGAITSGCPSPSLKKNIAMGYIEPAYSKV 91
+ K G T + R + +Q G ITSG SP+L +IA+ + +
Sbjct: 1 TEKLVGLVMTEKGVLRNELPVRFTDAQGNQHEGIITSGTFSPTLGYSIALARVP---EGI 57
Query: 92 GVELWVRVRDKRVDVKVTKMPFVK 115
G V++R++ + VKVTK FV+
Sbjct: 58 GETAIVQIRNREMPVKVTKPVFVR 81
>d1pj5a1 b.44.2.1 (A:743-830) N,N-dimethylglycine oxidase,
C-terminal domain {Arthrobacter globiformis [TaxId:
1665]}
Length = 88
Score = 73.7 bits (181), Expect = 6e-17
Identities = 24/91 (26%), Positives = 36/91 (39%), Gaps = 7/91 (7%)
Query: 36 SRKRTGFT-STGVPIRPGYEIFNANDQRVGAITSGCPSPSLKKNIAMGYIEPAYSKVGVE 94
+R+ T G I G E +Q VG +TS ++ K IA Y+ S G
Sbjct: 1 ARRLRCLTIDDGRSIVLGKEPVFYKEQAVGYVTSAAYGYTVAKPIAYSYLPGTVSV-GDS 59
Query: 95 LWVRVRDKRVDVKVTKMPFVKSNYYTPPKIR 125
+ + +R+ VT+ P Y P R
Sbjct: 60 VDIEYFGRRITATVTEDPL-----YDPKMTR 85
>d1vlya2 d.250.1.1 (A:3-243) Hypothetical protein YgfZ, N-terminal
domain {Escherichia coli [TaxId: 562]}
Length = 241
Score = 57.3 bits (137), Expect = 8e-10
Identities = 22/150 (14%), Positives = 51/150 (34%), Gaps = 8/150 (5%)
Query: 236 TRSKVSVFDVSHMLQTVVTGKHREEWLESICVADVHELDPGKGTLSLFTNEQGGIQDDLI 295
R +++ + +TG E++++ ADV ++ + L+ + +G + +L
Sbjct: 13 ARLPLTLMTLDDWALATITGADSEKYMQGQVTADVSQMAEDQHLLAAHCDAKGKMWSNLR 72
Query: 296 VTKTLEDSLFLVSNASRRKVDMDLMVAAQDRFKSLGKDIHLQFLSAEERGLIAVQGPLSS 355
+ + + ++ + R +L A ++ D ER L+ V G +
Sbjct: 73 LFRDGDGFAWIERRSVREPQLTELKKYAVFSKVTIAPDD--------ERVLLGVAGFQAR 124
Query: 356 TILQRHTDLDLSSLYFMTSRPCTIAGIPCT 385
L S + T
Sbjct: 125 AALANLFSELPSKEKQVVKEGATTLLWFEH 154
>d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo
sapiens) [TaxId: 9606]}
Length = 337
Score = 29.0 bits (63), Expect = 1.6
Identities = 16/94 (17%), Positives = 29/94 (30%), Gaps = 8/94 (8%)
Query: 199 TPLYDLHLSHGGKMVPFAGFSMPVQYGAVSITASHLHT---RSKVSVFDVSHMLQTVVTG 255
P Y H++ G+M P + + A ++T V +S+ + V TG
Sbjct: 10 KPAYSFHVTADGQMQPVPFPPDALIGPGIPRHARQINTLNHGEVVCAVTISNPTRHVYTG 69
Query: 256 KHREEWLESICVADVHELDPGKGTLSLFTNEQGG 289
+ V D+ L +
Sbjct: 70 GKG-----CVKVWDISHPGNKSPVSQLDCLNRDN 98
>d1cdza_ c.15.1.1 (A:) DNA-repair protein XRCC1 {Human (Homo
sapiens) [TaxId: 9606]}
Length = 96
Score = 27.0 bits (59), Expect = 2.0
Identities = 7/40 (17%), Positives = 13/40 (32%), Gaps = 2/40 (5%)
Query: 175 KFLSFFSGLTFVFSPGSSPSAEQRTPLYDLHLSHGGKMVP 214
+ FF G F ++R L + G++
Sbjct: 1 ELPDFFQGKHFFLY--GEFPGDERRKLIRYVTAFNGELED 38
>d1k8ka1 c.55.1.1 (A:3-160) Actin-related protein 3, Arp3 {Cow (Bos
taurus) [TaxId: 9913]}
Length = 158
Score = 26.9 bits (59), Expect = 3.7
Identities = 18/112 (16%), Positives = 41/112 (36%), Gaps = 11/112 (9%)
Query: 387 TRAGYTGEDGVEISVPGEQCTHIVEALLSDEDVK-LAGLGARDSLSGD-------ITLNT 438
T+ GY G + +P + + + G+ D GD
Sbjct: 15 TKLGYAGNTEPQFIIPSCIAIKESAKVGDQAQRRVMKGVDDLDFFIGDEAIEKPTYATKW 74
Query: 439 PVPHGSLKLSNDRFKSLGKDIHLQFL--SPEERGLIAVQGPLSSTILQRHTD 488
P+ HG ++ + + + + ++L PE+ + + PL++ + +T
Sbjct: 75 PIRHGIVEDWDL-MERFMEQVIFKYLRAEPEDHYFLLTEPPLNTPENREYTA 125
>g1htr.1 b.50.1.2 (P:,B:) Pepsin(ogen) {Human (Homo sapiens),
progastricsin (pepsinogen C) [TaxId: 9606]}
Length = 372
Score = 27.3 bits (59), Expect = 5.5
Identities = 20/91 (21%), Positives = 30/91 (32%), Gaps = 6/91 (6%)
Query: 168 TPPKYFLKFLSFFSGLTFVFSPGSSPSAEQRTPLYDLHLSHGGKMVPFAGFSMPVQYGAV 227
TPP+ FL S +V S A ++ S G + +QYG+
Sbjct: 65 TPPQNFLVLFDTGSSNLWVPSVYCQSQACTSHSRFNPSESSTYSTN---GQTFSLQYGSG 121
Query: 228 SIT---ASHLHTRSKVSVFDVSHMLQTVVTG 255
S+T T + V + L G
Sbjct: 122 SLTGFFGYDTLTVQSIQVPNQEFGLSENEPG 152
>d1u19a_ f.13.1.2 (A:) Rhodopsin {Cow (Bos taurus) [TaxId: 9913]}
Length = 348
Score = 26.9 bits (58), Expect = 7.9
Identities = 6/33 (18%), Positives = 12/33 (36%)
Query: 156 VTKMPFLKSNYHTPPKYFLKFLSFFSGLTFVFS 188
V + PF Y+ + L+ + L +
Sbjct: 19 VVRSPFEAPQYYLAEPWQFSMLAAYMFLLIMLG 51
>d1kkoa2 d.54.1.1 (A:1-160) beta-Methylaspartase {Citrobacter
amalonaticus [TaxId: 35703]}
Length = 160
Score = 25.9 bits (57), Expect = 9.8
Identities = 11/27 (40%), Positives = 14/27 (51%), Gaps = 2/27 (7%)
Query: 28 QSQIKSGVSRKRTGFTSTGVPIRPGYE 54
Q IK+G GF TG P+ PG+
Sbjct: 20 QQAIKNG--AGHDGFIYTGDPVTPGFT 44
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.319 0.136 0.398
Gapped
Lambda K H
0.267 0.0429 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,998,232
Number of extensions: 93306
Number of successful extensions: 218
Number of sequences better than 10.0: 1
Number of HSP's gapped: 205
Number of HSP's successfully gapped: 23
Length of query: 555
Length of database: 2,407,596
Length adjustment: 90
Effective length of query: 465
Effective length of database: 1,171,896
Effective search space: 544931640
Effective search space used: 544931640
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 55 (25.7 bits)