BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy4856
(654 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q9CSH3|RRP44_MOUSE Exosome complex exonuclease RRP44 OS=Mus musculus GN=Dis3 PE=2 SV=4
Length = 958
Score = 345 bits (885), Expect = 7e-94, Method: Compositional matrix adjust.
Identities = 173/352 (49%), Positives = 237/352 (67%), Gaps = 13/352 (3%)
Query: 1 LKDLISNPSRKFYVFVNEHHYETYVEQEPGESVNDRNDRALRRVATWYVKYEEHL----- 55
++D+ +N + FY F NEHH ETY+EQE GE+ NDRNDRA+R A WY EHL
Sbjct: 109 IRDVTNNQEKHFYTFTNEHHKETYIEQEQGENANDRNDRAIRVAAKWY---NEHLKRVAA 165
Query: 56 ESAVRVILLSEDVRNRDLATQSGLLTSSIEGYISTLSNGEPLLDKLSK-KEAVVETSVKD 114
+S ++VIL++ D +N++ A Q G+ + E Y+ +L+ L+D+L+ + + E
Sbjct: 166 DSQLQVILITNDRKNKEKAVQEGIPAFTCEEYVKSLTANPELIDRLAYLSDEMNEIESGK 225
Query: 115 SLYPLHATPSEIHAGIKNQSLLQGSFQASRENFLEGQVNCEG---YDKPILVQGREGLNR 171
++ H S++ GIK+ S LQG+F+ASREN+LE V G +K IL+QG + LNR
Sbjct: 226 IIFSEHLPLSKLQQGIKSGSYLQGTFRASRENYLEATVWIHGDKEEEKEILIQGIKHLNR 285
Query: 172 AIDGDTVAVRLLPESQWSAPLELVLEDEGSGEDE-EGEDGKLIKGNKTVPPAERRPTGQI 230
A+ D VAV LLP SQW AP +VL+DEG ED+ E ++ + + V RPTG++
Sbjct: 286 AVHEDIVAVELLPRSQWVAPSSVVLDDEGQNEDDVEKDEERELLLKTAVSEKMLRPTGRV 345
Query: 231 VGIIKRKWRQYCGILQPNPLAGSSRHLFVPAERKIPKIRVETRQIATLSGQRIVVAIDSW 290
VGIIKR WR YCG+L + + S RHLF PA+++IP+IR+ETRQ + L G+RI+VAID W
Sbjct: 346 VGIIKRNWRPYCGMLSKSDIKESRRHLFTPADKRIPRIRIETRQASALEGRRIIVAIDGW 405
Query: 291 PRHSRYPQGHFVRALGPIGDKDTENEVLLLEHDVPHSKFSDLVLSYLPPMPW 342
PR+SRYP GHFV+ LG +G+K+TE EVLLLEHDVPH FS VLS+LP MPW
Sbjct: 406 PRNSRYPNGHFVKNLGDVGEKETETEVLLLEHDVPHQPFSQAVLSFLPRMPW 457
Score = 122 bits (305), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 65/143 (45%), Positives = 74/143 (51%), Gaps = 47/143 (32%)
Query: 469 LCYNLVSDFHHYGLATPIYTHFTSPIRRYADIIVHRLLAACIGADATYPSLLDKKASTAL 528
C + +DFHHYGLA+PIYTHFTSPIRRYADIIVHRLLA IGAD TYP L DK + +
Sbjct: 754 FCSGMDNDFHHYGLASPIYTHFTSPIRRYADIIVHRLLAVAIGADCTYPELTDKHKLSDI 813
Query: 529 CYNLPGCTDIDDALHCRPLPNGNIEVTYPSLGMSQSCKDIQACLLELGYNLNYRNRQAQY 588
C N LN+R++ AQY
Sbjct: 814 CKN-----------------------------------------------LNFRHKMAQY 826
Query: 589 AGRASVALHTHLFFRRKSITEEE 611
A RASVA HT LFF+ K I EE
Sbjct: 827 AQRASVAFHTQLFFKSKGIVSEE 849
Score = 113 bits (282), Expect = 5e-24, Method: Compositional matrix adjust.
Identities = 59/94 (62%), Positives = 65/94 (69%), Gaps = 6/94 (6%)
Query: 388 DFPRTTRTNFILLF--LFQAVYFSSGMLQQSDFHHYGLATPIYTHFTSPIRRYADIIVHR 445
DFP IL + QAVYF SGM +DFHHYGLA+PIYTHFTSPIRRYADIIVHR
Sbjct: 732 DFPYLNTLLRILATRCMMQAVYFCSGM--DNDFHHYGLASPIYTHFTSPIRRYADIIVHR 789
Query: 446 LLAACIGADATYPSLLDKKASTALCYNLVSDFHH 479
LLA IGAD TYP L DK + +C NL +F H
Sbjct: 790 LLAVAIGADCTYPELTDKHKLSDICKNL--NFRH 821
Score = 81.6 bits (200), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 36/45 (80%), Positives = 39/45 (86%)
Query: 606 SITEEEVARRTDLRHLDVCSVDPPGCTDIDDALHCRPLPNGNIEV 650
SITEE++ R DLRHL VCSVDPPGCTDIDDALHCR L NGN+EV
Sbjct: 458 SITEEDMKNREDLRHLCVCSVDPPGCTDIDDALHCRELSNGNLEV 502
Score = 48.1 bits (113), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 19/22 (86%), Positives = 20/22 (90%)
Query: 533 PGCTDIDDALHCRPLPNGNIEV 554
PGCTDIDDALHCR L NGN+EV
Sbjct: 481 PGCTDIDDALHCRELSNGNLEV 502
>sp|Q9Y2L1|RRP44_HUMAN Exosome complex exonuclease RRP44 OS=Homo sapiens GN=DIS3 PE=1 SV=2
Length = 958
Score = 335 bits (859), Expect = 7e-91, Method: Compositional matrix adjust.
Identities = 172/352 (48%), Positives = 237/352 (67%), Gaps = 13/352 (3%)
Query: 1 LKDLISNPSRKFYVFVNEHHYETYVEQEPGESVNDRNDRALRRVATWYVKYEEHL----- 55
++D+ +N + FY F NEHH ETYVEQE GE+ NDRNDRA+R A WY EHL
Sbjct: 109 IRDVTNNQEKHFYTFTNEHHRETYVEQEQGENANDRNDRAIRVAAKWY---NEHLKKMSA 165
Query: 56 ESAVRVILLSEDVRNRDLATQSGLLTSSIEGYISTLSNGEPLLDKLS-KKEAVVETSVKD 114
++ ++VI ++ D RN++ A + G+ + E Y+ +L+ L+D+L+ E E
Sbjct: 166 DNQLQVIFITNDRRNKEKAIEEGIPAFTCEEYVKSLTANPELIDRLACLSEEGNEIESGK 225
Query: 115 SLYPLHATPSEIHAGIKNQSLLQGSFQASRENFLEGQVNCEG---YDKPILVQGREGLNR 171
++ H S++ GIK+ + LQG+F+ASREN+LE V G +K I++QG + LNR
Sbjct: 226 IIFSEHLPLSKLQQGIKSGTYLQGTFRASRENYLEATVWIHGDNEENKEIILQGLKHLNR 285
Query: 172 AIDGDTVAVRLLPESQWSAPLELVLEDEGSGEDEEGEDGKLIKGNKT-VPPAERRPTGQI 230
A+ D VAV LLP+SQW AP +VL DEG E++ ++ + + KT V +PTG++
Sbjct: 286 AVHEDIVAVELLPKSQWVAPSSVVLHDEGQNEEDVEKEEETERMLKTAVSEKMLKPTGRV 345
Query: 231 VGIIKRKWRQYCGILQPNPLAGSSRHLFVPAERKIPKIRVETRQIATLSGQRIVVAIDSW 290
VGIIKR WR YCG+L + + S RHLF PA+++IP+IR+ETRQ +TL G+RI+VAID W
Sbjct: 346 VGIIKRNWRPYCGMLSKSDIKESRRHLFTPADKRIPRIRIETRQASTLEGRRIIVAIDGW 405
Query: 291 PRHSRYPQGHFVRALGPIGDKDTENEVLLLEHDVPHSKFSDLVLSYLPPMPW 342
PR+SRYP GHFVR LG +G+K+TE EVLLLEHDVPH FS VLS+LP MPW
Sbjct: 406 PRNSRYPNGHFVRNLGDVGEKETETEVLLLEHDVPHQPFSQAVLSFLPKMPW 457
Score = 120 bits (302), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 64/143 (44%), Positives = 73/143 (51%), Gaps = 47/143 (32%)
Query: 469 LCYNLVSDFHHYGLATPIYTHFTSPIRRYADIIVHRLLAACIGADATYPSLLDKKASTAL 528
C + +DFHHYGLA+PIYTHFTSPIRRYAD+IVHRLLA IGAD TYP L DK +
Sbjct: 754 FCSGMDNDFHHYGLASPIYTHFTSPIRRYADVIVHRLLAVAIGADCTYPELTDKHKLADI 813
Query: 529 CYNLPGCTDIDDALHCRPLPNGNIEVTYPSLGMSQSCKDIQACLLELGYNLNYRNRQAQY 588
C N LN+R++ AQY
Sbjct: 814 CKN-----------------------------------------------LNFRHKMAQY 826
Query: 589 AGRASVALHTHLFFRRKSITEEE 611
A RASVA HT LFF+ K I EE
Sbjct: 827 AQRASVAFHTQLFFKSKGIVSEE 849
Score = 112 bits (279), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 53/78 (67%), Positives = 59/78 (75%), Gaps = 4/78 (5%)
Query: 402 LFQAVYFSSGMLQQSDFHHYGLATPIYTHFTSPIRRYADIIVHRLLAACIGADATYPSLL 461
+ QAVYF SGM +DFHHYGLA+PIYTHFTSPIRRYAD+IVHRLLA IGAD TYP L
Sbjct: 748 MMQAVYFCSGM--DNDFHHYGLASPIYTHFTSPIRRYADVIVHRLLAVAIGADCTYPELT 805
Query: 462 DKKASTALCYNLVSDFHH 479
DK +C NL +F H
Sbjct: 806 DKHKLADICKNL--NFRH 821
Score = 79.3 bits (194), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 34/45 (75%), Positives = 39/45 (86%)
Query: 606 SITEEEVARRTDLRHLDVCSVDPPGCTDIDDALHCRPLPNGNIEV 650
SITE+++ R DLRHL +CSVDPPGCTDIDDALHCR L NGN+EV
Sbjct: 458 SITEKDMKNREDLRHLCICSVDPPGCTDIDDALHCRELENGNLEV 502
Score = 47.8 bits (112), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 19/22 (86%), Positives = 20/22 (90%)
Query: 533 PGCTDIDDALHCRPLPNGNIEV 554
PGCTDIDDALHCR L NGN+EV
Sbjct: 481 PGCTDIDDALHCRELENGNLEV 502
>sp|P37202|DIS3_SCHPO Exosome complex exonuclease dis3 OS=Schizosaccharomyces pombe
(strain 972 / ATCC 24843) GN=dis3 PE=1 SV=1
Length = 970
Score = 247 bits (630), Expect = 3e-64, Method: Compositional matrix adjust.
Identities = 143/352 (40%), Positives = 201/352 (57%), Gaps = 18/352 (5%)
Query: 1 LKDLISNPSRKFYVFVNEHHYETYVEQEPGESVNDRNDRALRRVATWYVKYEEHLES-AV 59
+K L +++F F NE +T+VE+ ES NDRNDRA+R A+W+ HL S +
Sbjct: 129 MKRLCQEKTKRFTPFSNEFFVDTFVERLDDESANDRNDRAIRNAASWFAS---HLASLGI 185
Query: 60 RVILLSEDVRNRDLATQSGLLTSSIEGYISTLSNGEPLLDKLSK------KEAVVETSVK 113
+++LL++D N LA + G+ S+++ Y+ L + E LLD +S + VE+ K
Sbjct: 186 KIVLLTDDRENARLAAEQGIQVSTLKDYVQYLPDSEILLDMVSAIADAIASKEQVESGTK 245
Query: 114 DSLYPLHATPSEIHAGIKNQSLLQGSFQASRENFLEGQVNCEGYDKPILVQGREGLNRAI 173
+ +Y LH + S + A IKN + +G S N+LEG V GY+KP+LV GRE LNRA+
Sbjct: 246 N-VYELHWSMSRLLACIKNGEVHKGLINISTYNYLEGSVVVPGYNKPVLVSGRENLNRAV 304
Query: 174 DGDTVAVRLLPESQWSAPLELVLED-EGSGEDEEGE-DGKLIKGNKTVPPAERRPTGQIV 231
GD V +++LP+ QW E + +D E E D I + + PT ++V
Sbjct: 305 QGDIVCIQILPQDQWKTEAEEIADDDEDVVVSTAAEPDSARINDLELITKRNAHPTAKVV 364
Query: 232 GIIKRKWRQYCGILQPNPLA---GSSRH--LFVPAERKIPKIRVETRQIATLSGQRIVVA 286
GI+KR WR Y G + +A G S+ L P +R++PKIR TRQ L G+RIVVA
Sbjct: 365 GILKRNWRPYVGHVDNATIAQSKGGSQQTVLLTPMDRRVPKIRFRTRQAPRLVGRRIVVA 424
Query: 287 IDSWPRHSRYPQGHFVRALGPIGDKDTENEVLLLEHDVPHSKFSDLVLSYLP 338
ID W SRYP+GHFVR LG + K+ E E LLLE+DV H F VL LP
Sbjct: 425 IDLWDASSRYPEGHFVRDLGEMETKEAETEALLLEYDVQHRPFPKAVLDCLP 476
Score = 85.5 bits (210), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 39/69 (56%), Positives = 45/69 (65%)
Query: 402 LFQAVYFSSGMLQQSDFHHYGLATPIYTHFTSPIRRYADIIVHRLLAACIGADATYPSLL 461
+ A YF SG DF HYGLA+PIYTHFTSPIRRYAD++ HR LAA I + PSL
Sbjct: 778 MLSAEYFCSGTFAPPDFRHYGLASPIYTHFTSPIRRYADVLAHRQLAAAIDYETINPSLS 837
Query: 462 DKKASTALC 470
DK +C
Sbjct: 838 DKSRLIEIC 846
Score = 78.6 bits (192), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 47/119 (39%), Positives = 55/119 (46%), Gaps = 47/119 (39%)
Query: 476 DFHHYGLATPIYTHFTSPIRRYADIIVHRLLAACIGADATYPSLLDKKASTALCYNLPGC 535
DF HYGLA+PIYTHFTSPIRRYAD++ HR LAA I + PSL DK +C
Sbjct: 793 DFRHYGLASPIYTHFTSPIRRYADVLAHRQLAAAIDYETINPSLSDKSRLIEIC------ 846
Query: 536 TDIDDALHCRPLPNGNIEVTYPSLGMSQSCKDIQACLLELGYNLNYRNRQAQYAGRASV 594
NG +NYR+R AQ AGRAS+
Sbjct: 847 -------------NG----------------------------INYRHRMAQMAGRASI 864
Score = 56.2 bits (134), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 24/36 (66%), Positives = 26/36 (72%)
Query: 615 RTDLRHLDVCSVDPPGCTDIDDALHCRPLPNGNIEV 650
R D R +CS+DPPGC DIDDALH LPNGN EV
Sbjct: 496 RKDFRDKLICSIDPPGCQDIDDALHACVLPNGNYEV 531
Score = 42.0 bits (97), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 23/48 (47%), Positives = 29/48 (60%), Gaps = 3/48 (6%)
Query: 510 IGADATYPSLLDKK--ASTALC-YNLPGCTDIDDALHCRPLPNGNIEV 554
+ AD T+P ++K +C + PGC DIDDALH LPNGN EV
Sbjct: 484 VPADKTHPLWKNRKDFRDKLICSIDPPGCQDIDDALHACVLPNGNYEV 531
>sp|Q08162|RRP44_YEAST Exosome complex exonuclease DIS3 OS=Saccharomyces cerevisiae
(strain ATCC 204508 / S288c) GN=DIS3 PE=1 SV=1
Length = 1001
Score = 242 bits (617), Expect = 7e-63, Method: Compositional matrix adjust.
Identities = 142/390 (36%), Positives = 218/390 (55%), Gaps = 51/390 (13%)
Query: 6 SNPSRKFYVFVNEHHYETYVEQEPGESVNDRNDRALRRVATWYVKYEEHLES-AVRVILL 64
S+ ++F VF NE T+VE+ P E++NDRNDRA+R+ WY EHL+ + V+L+
Sbjct: 139 SDDHKRFIVFHNEFSEHTFVERLPNETINDRNDRAIRKTCQWY---SEHLKPYDINVVLV 195
Query: 65 SEDVRNRDLAT---QSGLLTSSIEGYISTLSNGEPLLDKLSKKEAVVETSVKDSL----Y 117
+ D NR+ AT +S ++T S+ YI L N + + D + + ++ + +D+ +
Sbjct: 196 TNDRLNREAATKEVESNIITKSLVQYIELLPNADDIRDSIPQMDSFDKDLERDTFSDFTF 255
Query: 118 PLHATPSEIHAGIKNQSLLQGSFQASRENFLEGQVNCEGYDKPILVQGREGLNRAIDGDT 177
P + + + + G+KN L QG+ Q S NFLEG V+ + KP+L+ G++ LNRA +GD
Sbjct: 256 PEYYSTARVMGGLKNGVLYQGNIQISEYNFLEGSVSLPRFSKPVLIVGQKNLNRAFNGDQ 315
Query: 178 VAVRLLPESQWSAPLELVLEDE----------GSGEDEEGEDGKLIKGNKTVPPAERR-- 225
V V LLP+S+W AP +VL+ E +G+D++ + N TV ++R
Sbjct: 316 VIVELLPQSEWKAPSSIVLDSEHFDVNDNPDIEAGDDDDNNES---SSNTTVISDKQRRL 372
Query: 226 ---------------PTGQIVGIIKRKWRQYCGILQP---NPLAGSSRHLFVP-AERKIP 266
PT ++V I +R WRQY G L P +P + S++++FV ++ +P
Sbjct: 373 LAKDAMIAQRSKKIQPTAKVVYIQRRSWRQYVGQLAPSSVDPQSSSTQNVFVILMDKCLP 432
Query: 267 KIRVETRQIATLSGQRIVVAIDSWPRHSRYPQGHFVRALGPIGDKDTENEVLLLEHDVPH 326
K+R+ TR+ A L +RIV++IDSWP +YP GHFVR LG I E E LLLEHDV +
Sbjct: 433 KVRIRTRRAAELLDKRIVISIDSWPTTHKYPLGHFVRDLGTIESAQAETEALLLEHDVEY 492
Query: 327 SKFSDLVLSYLPPMPWEKSTGRPWCSGTSI 356
FS VL LP + G W + T +
Sbjct: 493 RPFSKKVLECLP------AEGHDWKAPTKL 516
Score = 75.9 bits (185), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 35/72 (48%), Positives = 42/72 (58%)
Query: 402 LFQAVYFSSGMLQQSDFHHYGLATPIYTHFTSPIRRYADIIVHRLLAACIGADATYPSLL 461
+ A YF SG DF HYGLA IYTHFTSPIRRY D++ HR LA IG + +
Sbjct: 813 MMAAQYFYSGAYSYPDFRHYGLAVDIYTHFTSPIRRYCDVVAHRQLAGAIGYEPLSLTHR 872
Query: 462 DKKASTALCYNL 473
DK +C N+
Sbjct: 873 DKNKMDMICRNI 884
Score = 68.6 bits (166), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 42/134 (31%), Positives = 53/134 (39%), Gaps = 47/134 (35%)
Query: 476 DFHHYGLATPIYTHFTSPIRRYADIIVHRLLAACIGADATYPSLLDKKASTALCYNLPGC 535
DF HYGLA IYTHFTSPIRRY D++ HR LA IG + + DK +C N
Sbjct: 828 DFRHYGLAVDIYTHFTSPIRRYCDVVAHRQLAGAIGYEPLSLTHRDKNKMDMICRN---- 883
Query: 536 TDIDDALHCRPLPNGNIEVTYPSLGMSQSCKDIQACLLELGYNLNYRNRQAQYAGRASVA 595
+N ++R AQ+AGRAS+
Sbjct: 884 -------------------------------------------INRKHRNAQFAGRASIE 900
Query: 596 LHTHLFFRRKSITE 609
+ R TE
Sbjct: 901 YYVGQVMRNNESTE 914
Score = 61.2 bits (147), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 25/39 (64%), Positives = 30/39 (76%)
Query: 612 VARRTDLRHLDVCSVDPPGCTDIDDALHCRPLPNGNIEV 650
+ +R DLR +CS+DPPGC DIDDALH + LPNGN EV
Sbjct: 528 LTKRKDLRDKLICSIDPPGCVDIDDALHAKKLPNGNWEV 566
Score = 42.7 bits (99), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 17/22 (77%), Positives = 18/22 (81%)
Query: 533 PGCTDIDDALHCRPLPNGNIEV 554
PGC DIDDALH + LPNGN EV
Sbjct: 545 PGCVDIDDALHAKKLPNGNWEV 566
>sp|Q17632|RRP44_CAEEL Probable exosome complex exonuclease RRP44 OS=Caenorhabditis
elegans GN=dis-3 PE=3 SV=2
Length = 961
Score = 234 bits (598), Expect = 1e-60, Method: Compositional matrix adjust.
Identities = 134/344 (38%), Positives = 202/344 (58%), Gaps = 16/344 (4%)
Query: 11 KFYVFVNEHHYETYVEQEPGESVNDRNDRALRRVATWYVKYEEHLESAVRVILLSEDVRN 70
+F+VF+NE H ET+ E E ++ R + L A + + + A V++ ED +
Sbjct: 129 RFHVFMNEFHCETFSESSKFEDLS-RGEELLLSTALYLKTHWQKHNVAPVVLVFDEDSKK 187
Query: 71 RDLATQSGLLTSSIEGYISTLSN--GEPLLDKLSKKEAVVETSVKDSLYPLHATPSEIHA 128
R ++ ++ YI L + + LLD+++ E+ + K ++ + + I
Sbjct: 188 RMENHYQHVMY--LKEYIQNLEDPGKQALLDQMAAYESSGNGNEK-QIFDEYLSHDRIME 244
Query: 129 GIKNQSLLQGSFQASRENFLEGQVNCEGYDKPILVQGREGLNRAIDGDTVAVRLLPESQW 188
GI + ++ +G+F SREN+ E V + + G NRA++GDTVAV+LLPE QW
Sbjct: 245 GIASGTIKRGNFSVSRENYREATVIIDDQLTSWFITG-NNCNRAVNGDTVAVQLLPEDQW 303
Query: 189 SAPLELV----LEDEGSGEDEEGEDGKLIKGNKTVPPAERRP-----TGQIVGIIKRKWR 239
+AP + + +E+ D+ G + + P A++ T ++VGIIKR WR
Sbjct: 304 TAPEKKIRLRDVEEYVKTADDMGNEDEENDDENDEPKAKKSKKMTVSTAKVVGIIKRNWR 363
Query: 240 QYCGILQPNPLAGSSRHLFVPAERKIPKIRVETRQIATLSGQRIVVAIDSWPRHSRYPQG 299
+YCG+L P+ + G+ RHLF PAER IP+IR+ET Q TLS QRIVVAID WPR S+YP G
Sbjct: 364 EYCGMLLPSTVKGARRHLFCPAERLIPRIRIETEQAETLSQQRIVVAIDHWPRDSKYPLG 423
Query: 300 HFVRALGPIGDKDTENEVLLLEHDVPHSKFSDLVLSYLPPMPWE 343
H+VR++G +G ++TENEVLLLEHD+PH+ FS+ VL LP WE
Sbjct: 424 HYVRSIGEMGSRETENEVLLLEHDIPHAPFSESVLDCLPREEWE 467
Score = 92.4 bits (228), Expect = 9e-18, Method: Compositional matrix adjust.
Identities = 42/72 (58%), Positives = 52/72 (72%)
Query: 402 LFQAVYFSSGMLQQSDFHHYGLATPIYTHFTSPIRRYADIIVHRLLAACIGADATYPSLL 461
+ QAVYFS+G + + H+GLA IYTHFTSPIRRYAD+IVHRLLAA IGAD LL
Sbjct: 760 MTQAVYFSAGTVPVPQYQHFGLACAIYTHFTSPIRRYADVIVHRLLAAAIGADDIQSGLL 819
Query: 462 DKKASTALCYNL 473
++ T +C N+
Sbjct: 820 NQARCTKICTNI 831
Score = 91.3 bits (225), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 54/137 (39%), Positives = 66/137 (48%), Gaps = 47/137 (34%)
Query: 474 VSDFHHYGLATPIYTHFTSPIRRYADIIVHRLLAACIGADATYPSLLDKKASTALCYNLP 533
V + H+GLA IYTHFTSPIRRYAD+IVHRLLAA IGAD LL++ T +C N
Sbjct: 773 VPQYQHFGLACAIYTHFTSPIRRYADVIVHRLLAAAIGADDIQSGLLNQARCTKICTN-- 830
Query: 534 GCTDIDDALHCRPLPNGNIEVTYPSLGMSQSCKDIQACLLELGYNLNYRNRQAQYAGRAS 593
+NYR++QAQYAGRAS
Sbjct: 831 ---------------------------------------------INYRHKQAQYAGRAS 845
Query: 594 VALHTHLFFRRKSITEE 610
V L+ +F+ K T E
Sbjct: 846 VQLNVVRYFKGKVETCE 862
Score = 53.9 bits (128), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 23/36 (63%), Positives = 26/36 (72%)
Query: 615 RTDLRHLDVCSVDPPGCTDIDDALHCRPLPNGNIEV 650
R DLR L +CSVDP GCTDIDDALHC+ + EV
Sbjct: 479 RVDLRDLTICSVDPLGCTDIDDALHCKQIGEDLFEV 514
Score = 33.1 bits (74), Expect = 7.1, Method: Compositional matrix adjust.
Identities = 13/21 (61%), Positives = 15/21 (71%)
Query: 534 GCTDIDDALHCRPLPNGNIEV 554
GCTDIDDALHC+ + EV
Sbjct: 494 GCTDIDDALHCKQIGEDLFEV 514
>sp|A2RV18|DI3L1_DANRE DIS3-like exonuclease 1 OS=Danio rerio GN=dis3l PE=2 SV=1
Length = 1057
Score = 152 bits (384), Expect = 8e-36, Method: Compositional matrix adjust.
Identities = 114/370 (30%), Positives = 177/370 (47%), Gaps = 46/370 (12%)
Query: 1 LKDLISNPSRKFYVFVNEHHYETYVEQEPGESVNDRNDRALRRVATWYVKYEEHLESAVR 60
L+ L+ +P +F NE +Y +E GES + + R + A WY HL
Sbjct: 100 LRSLLKDPRHDCVLFANEFQQYSYCPREKGESQDKWHTRNVYNAAVWYYN---HLAGLQP 156
Query: 61 VILLSEDVRNRDL-----ATQSGLLTSSIE----GYISTLSNGEPLLDKLSKKEAVVETS 111
V++++ED RD A+ SG+ S + G+ L L +++ E
Sbjct: 157 VVMITED---RDAISEFSASNSGVFVISTQEYLLGFWPDLQAAHDLYHSIAQTLQEREND 213
Query: 112 VKDSLYPLHATPSEIHAGIKNQSLLQG-----SFQASRENFL--EGQV--NCEGYDKPIL 162
+ +Y H + AGIK+ +QG +A E F+ EG N E + +L
Sbjct: 214 GAEKVYTEHLPAEVLEAGIKSGRYIQGILSVNKHRAQHEAFVRYEGSASKNTE-LNSDVL 272
Query: 163 VQGREGLNRAIDGDTVAVRLLPESQWSAPLELVLEDEGSGEDEEGEDGKLIKGNKTVPPA 222
+ G + NRA+ GD V + LLP ++W + EG GE+ ED + +
Sbjct: 273 INGAKHRNRAVHGDVVVIELLPRNEWKG--RTMALTEGQGEERPLEDTQ----------S 320
Query: 223 ERRPTGQIVGIIKRKWRQYCGILQP-NPLAGSSRH----LFVPAERKIPKIRVETRQIAT 277
+ PTG++V I++R WR Y L P + SR+ L VP + +IPKIR+ T+Q
Sbjct: 321 QPMPTGRVVEILQRNWRDYVVTLPPFEEMQSQSRNSQKILVVPWDYRIPKIRISTQQAEA 380
Query: 278 LSGQRIVVAIDSWPRHSRYPQGHFVRALGPIGDKDTENEVLLLEHDVPHSKFSDLVLSYL 337
L QR++V +DSW S YP GHFVR LG G+ +TE + +L+E+ + FS+ L +
Sbjct: 381 LQDQRVIVRLDSWESTSVYPNGHFVRVLGKSGELETEIQTILVENCIHVPPFSEAQLREM 440
Query: 338 P----PMPWE 343
P PW+
Sbjct: 441 PVNTEENPWQ 450
Score = 70.9 bits (172), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 35/71 (49%), Positives = 45/71 (63%), Gaps = 6/71 (8%)
Query: 402 LFQAVYFSSGMLQQSDFHHYGLATPIYTHFTSPIRRYADIIVHRLLAACIGADATYPSLL 461
+ A+YFS+G + ++HYGLA YTHFTSPIRRYAD+IVHRLL A + +
Sbjct: 758 MSNALYFSTGSCPEEQYYHYGLALARYTHFTSPIRRYADVIVHRLLMAAVQLEK------ 811
Query: 462 DKKASTALCYN 472
D+ S AL N
Sbjct: 812 DESPSKALACN 822
Score = 66.6 bits (161), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 43/129 (33%), Positives = 61/129 (47%), Gaps = 44/129 (34%)
Query: 477 FHHYGLATPIYTHFTSPIRRYADIIVHRLLAACIGADATYPSLLDKKASTALCYNLPGCT 536
++HYGLA YTHFTSPIRRYAD+IVHRLL A + + D+ S AL N
Sbjct: 774 YYHYGLALARYTHFTSPIRRYADVIVHRLLMAAVQLEK------DESPSKALACN----- 822
Query: 537 DIDDALHCRPLPNGNIEVTYPSLGMSQSCKDIQACLLELGYNLNYRNRQAQYAGRASVAL 596
K+++ EL ++N +NR AQ++ + S+ L
Sbjct: 823 -----------------------------KELE----ELAQHINNKNRAAQHSQKQSIEL 849
Query: 597 HTHLFFRRK 605
++FR K
Sbjct: 850 FQCMYFRDK 858
Score = 42.4 bits (98), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 22/39 (56%), Positives = 25/39 (64%), Gaps = 3/39 (7%)
Query: 611 EVARRTDLR--HLDVCSVDPPGCTDIDDALHCRPLPNGN 647
EV+ R DLR HL V S+DP GC D+DD L R LP G
Sbjct: 455 EVSSRRDLRDSHL-VFSIDPKGCEDVDDTLSVRTLPGGK 492
>sp|A0JN80|DI3L1_BOVIN DIS3-like exonuclease 1 OS=Bos taurus GN=DIS3L PE=2 SV=2
Length = 1053
Score = 149 bits (376), Expect = 7e-35, Method: Compositional matrix adjust.
Identities = 105/372 (28%), Positives = 177/372 (47%), Gaps = 41/372 (11%)
Query: 1 LKDLISNPSRKFYVFVNEHHYETYVEQEPGESVNDRNDRALRRVATWYVKYEEHLESAVR 60
L++L+ + +F NE Y+ +E GES+ R++ A WY H + +
Sbjct: 103 LRNLLKDARHDCVLFANEFQQSCYLPRERGESMEKWQSRSIYNAAAWYY---HHCQDRMP 159
Query: 61 VILLSEDVR--NRDLATQSGLLTSSIEGYIST----LSNGEPLLDKLSKKEAVVETSVKD 114
+++++ED + + G+ S + Y+ L L + + + E ++
Sbjct: 160 IVMVTEDEEAIQQYGSETGGVFVISFKNYLDNFWPDLKAAHELCESILQSRRERENESQE 219
Query: 115 S---LYPLHATPSEIHAGIKNQSLLQGSFQASRENF-LEGQVNCEGYDKP-------ILV 163
S YP H + AGIK+ +QG+ ++ +E V +G +L+
Sbjct: 220 SHGKEYPEHVPLEVLEAGIKSGRYIQGTLNVNKHRAQIEAFVRLQGASSKDSDLVSDVLI 279
Query: 164 QGREGLNRAIDGDTVAVRLLPESQWSAPLELVLEDEGSGEDEEGEDGKLIKGNKTVPPAE 223
G + NR+I GD V V LLP+S+W + E++G D K + + P+E
Sbjct: 280 HGMKARNRSIHGDVVVVELLPKSEWKGRTTALGENDG--------DDKALGES----PSE 327
Query: 224 RRPTGQIVGIIKRKWRQYC----GILQPNPLAGSSRHLFV-PAERKIPKIRVETRQIATL 278
PTG++VGI+++ WR Y I + +++ + V P + +IPKIR+ T+Q L
Sbjct: 328 PMPTGRVVGILQKNWRDYVVTFPSIEEVQSQGKNAQKILVTPWDYRIPKIRISTQQAEAL 387
Query: 279 SGQRIVVAIDSWPRHSRYPQGHFVRALGPIGDKDTENEVLLLEHDVPHSKFSDLVLSYL- 337
R+VV IDSW S YP GHFVR LG IGD + E +L+E+ + FS+ + +
Sbjct: 388 QDFRVVVRIDSWESTSMYPNGHFVRVLGRIGDLEGEIATILVENSISVVPFSEAQMCEMP 447
Query: 338 ---PPMPWEKST 346
P PW+ S+
Sbjct: 448 VNTPENPWKVSS 459
Score = 77.8 bits (190), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 38/75 (50%), Positives = 47/75 (62%), Gaps = 3/75 (4%)
Query: 402 LFQAVYFSSGMLQQSDFHHYGLATPIYTHFTSPIRRYADIIVHRLLAACIGADATY---P 458
+ A+YFS+G + +FHHYGLA YTHFTSPIRRY+DIIVHRLL A I D
Sbjct: 766 MSNALYFSTGSCAEEEFHHYGLALDKYTHFTSPIRRYSDIIVHRLLMAAISKDKKMEIQE 825
Query: 459 SLLDKKASTALCYNL 473
+L K LC ++
Sbjct: 826 NLFSNKDLEELCRHI 840
Score = 70.5 bits (171), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 53/157 (33%), Positives = 71/157 (45%), Gaps = 48/157 (30%)
Query: 459 SLLDKKASTALCYNLVS----DFHHYGLATPIYTHFTSPIRRYADIIVHRLLAACIGADA 514
S+ + S AL ++ S +FHHYGLA YTHFTSPIRRY+DIIVHRLL A I D
Sbjct: 760 SMATQAMSNALYFSTGSCAEEEFHHYGLALDKYTHFTSPIRRYSDIIVHRLLMAAISKDK 819
Query: 515 TYPSLLDKKASTALCYNLPGCTDIDDALHCRPLPNGNIEVTYPSLGMSQSCKDIQACLLE 574
+I + L S KD++ E
Sbjct: 820 K--------------------MEIQENLF--------------------SNKDLE----E 835
Query: 575 LGYNLNYRNRQAQYAGRASVALHTHLFFRRKSITEEE 611
L ++N RNR AQ++ + S L ++F+ K EE
Sbjct: 836 LCRHINNRNRAAQHSQKQSTELFQCMYFKDKDPETEE 872
Score = 45.4 bits (106), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 23/46 (50%), Positives = 30/46 (65%), Gaps = 3/46 (6%)
Query: 607 ITEEEVARRTDLR--HLDVCSVDPPGCTDIDDALHCRPLPNGNIEV 650
++ +E R DLR HL V S+DP GC D+DD L R L NGN+E+
Sbjct: 457 VSSQEEREREDLRKTHL-VFSIDPSGCEDVDDTLSVRALDNGNLEL 501
>sp|Q5U2P0|DI3L1_RAT DIS3-like exonuclease 1 OS=Rattus norvegicus GN=Dis3l PE=2 SV=2
Length = 1054
Score = 148 bits (373), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 110/376 (29%), Positives = 174/376 (46%), Gaps = 51/376 (13%)
Query: 1 LKDLISNPSRKFYVFVNEHHYETYVEQEPGESVNDRNDRALRRVATWYVKYEEHLESAVR 60
L++L+ + +F NE Y+ +E GE++ R++ A WY H E +
Sbjct: 103 LRNLLKDARHDCVLFANEFQQHCYLPREKGEAMEKWQTRSIYNSAVWYY---HHCEDRMP 159
Query: 61 VILLSED---VRNRDLATQSGLLTSSIEGYIST----LSNGEPLLDKLSKKEAVVETSVK 113
+++++ED ++ T+ G+ S + Y+ L L D + + E+ +
Sbjct: 160 IVMVTEDEEAIQQYGSETE-GVFVISFKNYLDNFWPDLKAAHELCDSIIQSRRERESESQ 218
Query: 114 DS---LYPLHATPSEIHAGIKNQSLLQGSFQASRENF-LEGQVNCEGYDKP-------IL 162
++ YP H + AGIK+ +QG ++ +E V +G IL
Sbjct: 219 ETHGKEYPEHLPLEVLEAGIKSGRYIQGILNVNKHRAQIEAFVRLQGASSKDSGLVSDIL 278
Query: 163 VQGREGLNRAIDGDTVAVRLLPESQW----SAPLELVLEDEGSGEDEEGEDGKLIKGNKT 218
+ G + NR+I GD V V LLP+S+W +A E ED+ SGE
Sbjct: 279 IHGSKARNRSIHGDVVVVELLPKSEWKGRTAALCENDSEDKASGES-------------- 324
Query: 219 VPPAERRPTGQIVGIIKRKWRQYCGILQPNPLAGSS-----RHLFVPAERKIPKIRVETR 273
P+E PTG++VGI+++ WR Y S + L P + +IPKIR+ T+
Sbjct: 325 --PSEPMPTGRVVGILQKNWRDYVVTFPSKEEVQSQGKNAQKILVTPWDYRIPKIRISTQ 382
Query: 274 QIATLSGQRIVVAIDSWPRHSRYPQGHFVRALGPIGDKDTENEVLLLEHDVPHSKFSDLV 333
Q L R+VV IDSW S YP GHFVR LG IGD + E +L+E+ + FS+
Sbjct: 383 QAEALQDFRVVVRIDSWETTSVYPNGHFVRVLGRIGDLEGEIATILVENSINVVPFSEAQ 442
Query: 334 LSYLP----PMPWEKS 345
+ +P PW+ S
Sbjct: 443 MCEMPVNTAENPWKVS 458
Score = 77.8 bits (190), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 37/75 (49%), Positives = 47/75 (62%), Gaps = 3/75 (4%)
Query: 402 LFQAVYFSSGMLQQSDFHHYGLATPIYTHFTSPIRRYADIIVHRLLAACIGADATY---P 458
+ A+YFS+G + +FHHYGLA YTHFTSPIRRY+DI+VHRLL A I D
Sbjct: 766 MSNALYFSTGSCAEEEFHHYGLALDKYTHFTSPIRRYSDIVVHRLLMAAISKDKKVEIKE 825
Query: 459 SLLDKKASTALCYNL 473
+L K LC ++
Sbjct: 826 NLFSNKNLEELCRHI 840
Score = 69.7 bits (169), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 51/157 (32%), Positives = 69/157 (43%), Gaps = 48/157 (30%)
Query: 459 SLLDKKASTALCYNLVS----DFHHYGLATPIYTHFTSPIRRYADIIVHRLLAACIGADA 514
S+ + S AL ++ S +FHHYGLA YTHFTSPIRRY+DI+VHRLL A I D
Sbjct: 760 SMATQAMSNALYFSTGSCAEEEFHHYGLALDKYTHFTSPIRRYSDIVVHRLLMAAISKDK 819
Query: 515 TYPSLLDKKASTALCYNLPGCTDIDDALHCRPLPNGNIEVTYPSLGMSQSCKDIQACLLE 574
+I + L N N+E E
Sbjct: 820 K--------------------VEIKENL----FSNKNLE--------------------E 835
Query: 575 LGYNLNYRNRQAQYAGRASVALHTHLFFRRKSITEEE 611
L ++N RNR AQ + + S L ++F+ + EE
Sbjct: 836 LCRHINNRNRAAQRSQKQSTELFQCMYFKDRDPETEE 872
Score = 46.2 bits (108), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 24/46 (52%), Positives = 31/46 (67%), Gaps = 3/46 (6%)
Query: 607 ITEEEVARRTDLR--HLDVCSVDPPGCTDIDDALHCRPLPNGNIEV 650
++ +E R DLR HL V S+DP GC D+DDAL R L NGN+E+
Sbjct: 457 VSPKEEQERRDLRSTHL-VFSIDPKGCEDVDDALSVRTLNNGNLEL 501
Score = 35.0 bits (79), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 16/32 (50%), Positives = 22/32 (68%), Gaps = 2/32 (6%)
Query: 525 STALCYNL--PGCTDIDDALHCRPLPNGNIEV 554
ST L +++ GC D+DDAL R L NGN+E+
Sbjct: 470 STHLVFSIDPKGCEDVDDALSVRTLNNGNLEL 501
>sp|Q5R5N8|DI3L1_PONAB DIS3-like exonuclease 1 OS=Pongo abelii GN=DIS3L PE=2 SV=1
Length = 1054
Score = 147 bits (371), Expect = 3e-34, Method: Compositional matrix adjust.
Identities = 110/376 (29%), Positives = 173/376 (46%), Gaps = 51/376 (13%)
Query: 1 LKDLISNPSRKFYVFVNEHHYETYVEQEPGESVNDRNDRALRRVATWYVKYEEHLESAVR 60
L++L+ + +F NE Y+ +E GES+ R++ A WY H + +
Sbjct: 103 LRNLLKDARHDCILFANEFQQCCYLPRERGESMEKWQTRSIYNAAVWYY---HHCQDRMP 159
Query: 61 VILLSED---VRNRDLATQSGLLTSSIEGYIST----LSNGEPLLDKLSKKEAVVETSVK 113
+++++ED ++ T+ G+ S + Y+ L L D + + E +
Sbjct: 160 IVMVTEDEEAIQQYGSETE-GVFVISFKNYLDNFWPDLKAAHELCDSILQSRRERENESQ 218
Query: 114 DS---LYPLHATPSEIHAGIKNQSLLQGSFQASRENF-LEGQVNCEGYDKP-------IL 162
+S YP H + AGIK+ +QG ++ +E V +G IL
Sbjct: 219 ESHGKEYPEHLPLEVLEAGIKSGRYIQGILNVNKHRAQIEAFVRLQGASSKDSDLVSDIL 278
Query: 163 VQGREGLNRAIDGDTVAVRLLPESQWS----APLELVLEDEGSGEDEEGEDGKLIKGNKT 218
+ G + NR+I GD V V LLP+++W A E +D+ SGE
Sbjct: 279 IHGMKARNRSIHGDVVVVELLPKNEWKGRTVALCENDCDDKASGES-------------- 324
Query: 219 VPPAERRPTGQIVGIIKRKWRQYCGILQPNPLAGSS-----RHLFVPAERKIPKIRVETR 273
P+E PTG++VGI+++ WR Y S + L P + +IPKIR+ T+
Sbjct: 325 --PSEPMPTGRVVGILQKNWRDYVVTFPSKEEVQSQGKNAQKILVTPWDYRIPKIRISTQ 382
Query: 274 QIATLSGQRIVVAIDSWPRHSRYPQGHFVRALGPIGDKDTENEVLLLEHDVPHSKFSDLV 333
Q TL R+VV IDSW S YP GHFVR LG IGD + E +L+E+ + FS+
Sbjct: 383 QAETLQDFRVVVRIDSWESTSVYPNGHFVRVLGRIGDLEGEIATILVENSISVIPFSEAQ 442
Query: 334 LSYL----PPMPWEKS 345
+ + P PW+ S
Sbjct: 443 MCEMPVNTPENPWKVS 458
Score = 77.4 bits (189), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 37/75 (49%), Positives = 47/75 (62%), Gaps = 3/75 (4%)
Query: 402 LFQAVYFSSGMLQQSDFHHYGLATPIYTHFTSPIRRYADIIVHRLLAACIGADATYP--- 458
+ A+YFS+G + +FHHYGLA YTHFTSPIRRY+DI+VHRLL A I D
Sbjct: 766 MSNALYFSTGSCAEEEFHHYGLALDKYTHFTSPIRRYSDIVVHRLLMAAISKDKKMEIKG 825
Query: 459 SLLDKKASTALCYNL 473
+L K LC ++
Sbjct: 826 NLFSNKDLEELCRHI 840
Score = 71.6 bits (174), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 60/176 (34%), Positives = 79/176 (44%), Gaps = 58/176 (32%)
Query: 440 DIIVHRLLAACIGADATYPSLLDKKASTALCYNLVS----DFHHYGLATPIYTHFTSPIR 495
D IV+RLL S+ + S AL ++ S +FHHYGLA YTHFTSPIR
Sbjct: 751 DPIVNRLLR----------SMATQAMSNALYFSTGSCAEEEFHHYGLALDKYTHFTSPIR 800
Query: 496 RYADIIVHRLLAACIGADATYPSLLDKKASTALCYNLPGCTDIDDALHCRPLPNGNIEVT 555
RY+DI+VHRLL A I DKK GN+
Sbjct: 801 RYSDIVVHRLLMAAISK--------DKKMEI----------------------KGNL--- 827
Query: 556 YPSLGMSQSCKDIQACLLELGYNLNYRNRQAQYAGRASVALHTHLFFRRKSITEEE 611
S KD++ EL ++N RNR AQ++ + S L ++F+ K EE
Sbjct: 828 -------FSNKDLE----ELCRHINNRNRAAQHSQKQSTELFQCMYFKDKDPATEE 872
Score = 47.0 bits (110), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 24/46 (52%), Positives = 31/46 (67%), Gaps = 3/46 (6%)
Query: 607 ITEEEVARRTDLR--HLDVCSVDPPGCTDIDDALHCRPLPNGNIEV 650
++ EE +R DLR HL V S+DP GC D+DD L R L NGN+E+
Sbjct: 457 VSPEEEQKRKDLRKSHL-VFSIDPKGCEDVDDTLSVRTLNNGNLEL 501
>sp|Q8C0S1|DI3L1_MOUSE DIS3-like exonuclease 1 OS=Mus musculus GN=Dis3l PE=2 SV=2
Length = 1053
Score = 146 bits (369), Expect = 5e-34, Method: Compositional matrix adjust.
Identities = 106/371 (28%), Positives = 170/371 (45%), Gaps = 41/371 (11%)
Query: 1 LKDLISNPSRKFYVFVNEHHYETYVEQEPGESVNDRNDRALRRVATWYVKYEEHLESAVR 60
L++L+ + +F NE Y+ +E GE++ R++ A WY H E +
Sbjct: 103 LRNLLKDARHDCVLFANEFQQHCYLPREKGEAMEKWQTRSIYNSAVWYY---HHCEDRMP 159
Query: 61 VILLSEDVR--NRDLATQSGLLTSSIEGYIST----LSNGEPLLDKLSKKEAVVETSVKD 114
+++++ED + + G+ S + Y+ L L D + + ET ++
Sbjct: 160 IVMVTEDEEAIQKYGSETEGVFVISFKNYLDNFWPDLKAAHDLCDSILQSRRERETESQE 219
Query: 115 S---LYPLHATPSEIHAGIKNQSLLQGSFQASRENF-LEGQVNCEGYDKP-------ILV 163
+ YP H + AGIK+ +QG ++ +E V G IL+
Sbjct: 220 THGKEYPEHLPLEVLEAGIKSGRYIQGILNVNKHRAQIEAFVRLHGASSKDSGLVSDILI 279
Query: 164 QGREGLNRAIDGDTVAVRLLPESQWSAPLELVLEDEGSGEDEEGEDGKLIKGNKTVPPAE 223
G + NR+I GD V V +LP+S+W + E++ S + GE P+E
Sbjct: 280 HGSKARNRSIHGDVVVVEMLPKSEWKGRTAALGEND-SDDKASGES-----------PSE 327
Query: 224 RRPTGQIVGIIKRKWRQYCGILQPNPLAGSS-----RHLFVPAERKIPKIRVETRQIATL 278
PTG++VGI+++ WR Y S + L P + +IPKIR+ T+Q L
Sbjct: 328 PMPTGRVVGILQKNWRDYVVTFPSKEEVQSQGKNAQKILVTPWDYRIPKIRISTQQAEAL 387
Query: 279 SGQRIVVAIDSWPRHSRYPQGHFVRALGPIGDKDTENEVLLLEHDVPHSKFSDLVLSYL- 337
R+VV IDSW S YP GHFVR LG IGD + E +L+E+ + FS+ + +
Sbjct: 388 QDFRVVVRIDSWEATSVYPNGHFVRVLGRIGDLEGEIATILVENSISVVPFSEAQMCEMP 447
Query: 338 ---PPMPWEKS 345
P PW+ S
Sbjct: 448 VNTPENPWKVS 458
Score = 77.8 bits (190), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 37/75 (49%), Positives = 47/75 (62%), Gaps = 3/75 (4%)
Query: 402 LFQAVYFSSGMLQQSDFHHYGLATPIYTHFTSPIRRYADIIVHRLLAACIGADATY---P 458
+ A+YFS+G + +FHHYGLA YTHFTSPIRRY+DI+VHRLL A I D
Sbjct: 766 MSNALYFSTGSCAEEEFHHYGLALDKYTHFTSPIRRYSDIVVHRLLMAAISKDKKMEIKE 825
Query: 459 SLLDKKASTALCYNL 473
+L K LC ++
Sbjct: 826 NLFSNKNLEELCRHI 840
Score = 70.5 bits (171), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 51/157 (32%), Positives = 69/157 (43%), Gaps = 48/157 (30%)
Query: 459 SLLDKKASTALCYNLVS----DFHHYGLATPIYTHFTSPIRRYADIIVHRLLAACIGADA 514
S+ + S AL ++ S +FHHYGLA YTHFTSPIRRY+DI+VHRLL A I D
Sbjct: 760 SMATQAMSNALYFSTGSCAEEEFHHYGLALDKYTHFTSPIRRYSDIVVHRLLMAAISKDK 819
Query: 515 TYPSLLDKKASTALCYNLPGCTDIDDALHCRPLPNGNIEVTYPSLGMSQSCKDIQACLLE 574
+I + L N N+E E
Sbjct: 820 K--------------------MEIKENL----FSNKNLE--------------------E 835
Query: 575 LGYNLNYRNRQAQYAGRASVALHTHLFFRRKSITEEE 611
L ++N RNR AQ + + S L ++F+ + EE
Sbjct: 836 LCRHINNRNRAAQRSQKQSTELFQCMYFKDRDAETEE 872
Score = 44.7 bits (104), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 23/46 (50%), Positives = 30/46 (65%), Gaps = 3/46 (6%)
Query: 607 ITEEEVARRTDLR--HLDVCSVDPPGCTDIDDALHCRPLPNGNIEV 650
++ +E R DLR HL V S+DP GC D+DD L R L NGN+E+
Sbjct: 457 VSPKEEQERKDLRTTHL-VFSIDPKGCEDVDDTLSVRTLNNGNLEL 501
>sp|Q8TF46|DI3L1_HUMAN DIS3-like exonuclease 1 OS=Homo sapiens GN=DIS3L PE=1 SV=2
Length = 1054
Score = 146 bits (369), Expect = 5e-34, Method: Compositional matrix adjust.
Identities = 109/376 (28%), Positives = 173/376 (46%), Gaps = 51/376 (13%)
Query: 1 LKDLISNPSRKFYVFVNEHHYETYVEQEPGESVNDRNDRALRRVATWYVKYEEHLESAVR 60
L++L+ + +F NE Y+ +E GES+ R++ A WY H + +
Sbjct: 103 LRNLLKDARHDCILFANEFQQCCYLPRERGESMEKWQTRSIYNAAVWYY---HHCQDRMP 159
Query: 61 VILLSED---VRNRDLATQSGLLTSSIEGYIST----LSNGEPLLDKLSKKEAVVETSVK 113
+++++ED ++ T+ G+ + + Y+ L L D + + E +
Sbjct: 160 IVMVTEDEEAIQQYGSETE-GVFVITFKNYLDNFWPDLKAAHELCDSILQSRRERENESQ 218
Query: 114 DS---LYPLHATPSEIHAGIKNQSLLQGSFQASRENF-LEGQVNCEGYDKP-------IL 162
+S YP H + AGIK+ +QG ++ +E V +G IL
Sbjct: 219 ESHGKEYPEHLPLEVLEAGIKSGRYIQGILNVNKHRAQIEAFVRLQGASSKDSDLVSDIL 278
Query: 163 VQGREGLNRAIDGDTVAVRLLPESQWS----APLELVLEDEGSGEDEEGEDGKLIKGNKT 218
+ G + NR+I GD V V LLP+++W A E +D+ SGE
Sbjct: 279 IHGMKARNRSIHGDVVVVELLPKNEWKGRTVALCENDCDDKASGES-------------- 324
Query: 219 VPPAERRPTGQIVGIIKRKWRQYCGILQPNPLAGSS-----RHLFVPAERKIPKIRVETR 273
P+E PTG++VGI+++ WR Y S + L P + +IPKIR+ T+
Sbjct: 325 --PSEPMPTGRVVGILQKNWRDYVVTFPSKEEVQSQGKNAQKILVTPWDYRIPKIRISTQ 382
Query: 274 QIATLSGQRIVVAIDSWPRHSRYPQGHFVRALGPIGDKDTENEVLLLEHDVPHSKFSDLV 333
Q TL R+VV IDSW S YP GHFVR LG IGD + E +L+E+ + FS+
Sbjct: 383 QAETLQDFRVVVRIDSWESTSVYPNGHFVRVLGRIGDLEGEIATILVENSISVIPFSEAQ 442
Query: 334 LSYL----PPMPWEKS 345
+ + P PW+ S
Sbjct: 443 MCEMPVNTPESPWKVS 458
Score = 77.4 bits (189), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 37/75 (49%), Positives = 47/75 (62%), Gaps = 3/75 (4%)
Query: 402 LFQAVYFSSGMLQQSDFHHYGLATPIYTHFTSPIRRYADIIVHRLLAACIGADATYP--- 458
+ A+YFS+G + +FHHYGLA YTHFTSPIRRY+DI+VHRLL A I D
Sbjct: 766 MSNALYFSTGSCAEEEFHHYGLALDKYTHFTSPIRRYSDIVVHRLLMAAISKDKKMEIKG 825
Query: 459 SLLDKKASTALCYNL 473
+L K LC ++
Sbjct: 826 NLFSNKDLEELCRHI 840
Score = 70.1 bits (170), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 59/172 (34%), Positives = 78/172 (45%), Gaps = 50/172 (29%)
Query: 440 DIIVHRLLAACIGADATYPSLLDKKASTALCYNLVSDFHHYGLATPIYTHFTSPIRRYAD 499
D IV+RLL + + A +L ST C +FHHYGLA YTHFTSPIRRY+D
Sbjct: 751 DPIVNRLLRS-MATQAMSNALY---FSTGSCAE--EEFHHYGLALDKYTHFTSPIRRYSD 804
Query: 500 IIVHRLLAACIGADATYPSLLDKKASTALCYNLPGCTDIDDALHCRPLPNGNIEVTYPSL 559
I+VHRLL A I DKK GN+
Sbjct: 805 IVVHRLLMAAISK--------DKKMEI----------------------KGNL------- 827
Query: 560 GMSQSCKDIQACLLELGYNLNYRNRQAQYAGRASVALHTHLFFRRKSITEEE 611
S KD++ EL ++N RN+ AQ++ + S L ++F+ K EE
Sbjct: 828 ---FSNKDLE----ELCRHINNRNQAAQHSQKQSTELFQCMYFKDKDPATEE 872
Score = 47.0 bits (110), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 24/46 (52%), Positives = 31/46 (67%), Gaps = 3/46 (6%)
Query: 607 ITEEEVARRTDLR--HLDVCSVDPPGCTDIDDALHCRPLPNGNIEV 650
++ EE +R DLR HL V S+DP GC D+DD L R L NGN+E+
Sbjct: 457 VSPEEEQKRKDLRKSHL-VFSIDPKGCEDVDDTLSVRTLNNGNLEL 501
>sp|Q0P4R5|DI3L1_XENTR DIS3-like exonuclease 1 OS=Xenopus tropicalis GN=dis3l PE=2 SV=2
Length = 1039
Score = 144 bits (362), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 111/369 (30%), Positives = 166/369 (44%), Gaps = 42/369 (11%)
Query: 1 LKDLISNPSRKFYVFVNEHHYETYVEQEPGESVNDRNDRALRRVATWYVKYEEHLESAVR 60
L L+ + +F NE Y+ +E GES R + WY +H + +
Sbjct: 98 LCSLLRDTRHDCILFSNEFQNHAYLPREMGESALAWQTRCIYNSCVWYY---QHCQKKIP 154
Query: 61 VILLSED---VRNRDLATQSGLLTS---SIEGYISTLSNGEPLLDKLSKKEAVVETSVKD 114
V++++ED +R + TQ + S +E + L L L + E ++
Sbjct: 155 VVMVTEDKSVIRQYNTETQEVYVVSFQIYLETFWPNLKGALELYKSLKETHRERELESRE 214
Query: 115 ---SLYPLHATPSEIHAGIKNQSLLQGSFQASRENF-LEGQVNCEGY-------DKPILV 163
YP H + AGIK+ QG ++ LEG V +G IL+
Sbjct: 215 GNGKEYPEHLPLEILEAGIKSGRYQQGVLSVNKHRAQLEGFVRLQGLGGKETDIQSDILI 274
Query: 164 QGREGLNRAIDGDTVAVRLLPESQWSAPLELVLEDEGSGEDEEGEDGKLIKGNKTVPPAE 223
G + NRAI GD VAV LL S+W + E+E DE+ D + AE
Sbjct: 275 YGTKPRNRAIHGDLVAVELLSRSEWKGRNGALCENET---DEKAVDAQ----------AE 321
Query: 224 RRPTGQIVGIIKRKWRQYCGILQPNPL-----AGSSRHLFVPAERKIPKIRVETRQIATL 278
PTG++VGI++R WR Y + R L +P + +IPKIR+ T+Q L
Sbjct: 322 VMPTGRVVGILQRNWRDYVATFPAKEDIETQGKNAQRVLVMPWDYRIPKIRISTQQAEAL 381
Query: 279 SGQRIVVAIDSWPRHSRYPQGHFVRALGPIGDKDTENEVLLLEHDVPHSKFSDLVLSYLP 338
R+VV IDSW S YP GHFVR LG G+ + E +L+E+ + + FS+ L+ +P
Sbjct: 382 QDYRVVVRIDSWESTSLYPNGHFVRVLGRTGNLEAEIATILVENSISVNPFSEAQLAEMP 441
Query: 339 P----MPWE 343
PW+
Sbjct: 442 SNTPESPWQ 450
Score = 72.4 bits (176), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 36/69 (52%), Positives = 45/69 (65%), Gaps = 1/69 (1%)
Query: 405 AVYFSSGMLQQSDFHHYGLATPIYTHFTSPIRRYADIIVHRLLAACIGADATYPSLLDKK 464
A YFS+G + +F+HYGLA YTHFTSPIRRYADI+VHRLL A + +LL K
Sbjct: 760 ARYFSTGSYTEDEFYHYGLALEKYTHFTSPIRRYADIVVHRLLLAAVNK-GPKDNLLGNK 818
Query: 465 ASTALCYNL 473
LC ++
Sbjct: 819 DLEELCRHI 827
Score = 63.9 bits (154), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 43/130 (33%), Positives = 55/130 (42%), Gaps = 48/130 (36%)
Query: 476 DFHHYGLATPIYTHFTSPIRRYADIIVHRLLAACIGADATYPSLLDKKASTALCYNLPGC 535
+F+HYGLA YTHFTSPIRRYADI+VHRLL A + NL G
Sbjct: 772 EFYHYGLALEKYTHFTSPIRRYADIVVHRLLLAAVNKGPK--------------DNLLGN 817
Query: 536 TDIDDALHCRPLPNGNIEVTYPSLGMSQSCKDIQACLLELGYNLNYRNRQAQYAGRASVA 595
D++ EL ++N RNR AQ+ + S
Sbjct: 818 KDLE----------------------------------ELCRHINVRNRAAQHCQKQSTE 843
Query: 596 LHTHLFFRRK 605
L +FF+ K
Sbjct: 844 LFQCMFFKDK 853
Score = 43.9 bits (102), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 23/42 (54%), Positives = 29/42 (69%), Gaps = 3/42 (7%)
Query: 611 EVARRTDLR--HLDVCSVDPPGCTDIDDALHCRPLPNGNIEV 650
E R DLR HL V S+DP GC D+DDAL R LP+G++E+
Sbjct: 454 EEGDRLDLRKTHL-VFSIDPKGCEDVDDALSIRKLPSGHLEL 494
>sp|Q6GN11|DI3L1_XENLA DIS3-like exonuclease 1 OS=Xenopus laevis GN=dis3l PE=2 SV=2
Length = 1040
Score = 139 bits (350), Expect = 7e-32, Method: Compositional matrix adjust.
Identities = 113/372 (30%), Positives = 173/372 (46%), Gaps = 48/372 (12%)
Query: 1 LKDLISNPSRKFYVFVNEHHYETYVEQEPGESVNDRNDRALRRVATWYVKYEEHLESAVR 60
L L+ + +F NE Y+ +E GES R + WY +H + +
Sbjct: 99 LCSLLRDTRHDCILFSNEFQNHAYLPREMGESALAWQTRCIYNSCVWYY---QHCQKKIP 155
Query: 61 VILLSED---VRNRDLATQSGLLTSSIEGYIST--------LSNGEPLLDK-LSKKEAVV 108
V++++ED + + TQ + S + Y+ T L + L D L +K
Sbjct: 156 VVMVTEDESVIGKYNTETQE-VYVVSFQIYLETFWPNFKGALELYKSLRDTHLERKLESR 214
Query: 109 ETSVKDSLYPLHATPSEIHAGIKNQSLLQGSFQASRENF-LEGQVNCEGY-------DKP 160
E++ K+ YP H + AGIK+ QG ++ LE V +G
Sbjct: 215 ESNGKE--YPEHLPLEILEAGIKSGRYKQGVLSVNKHRAQLESFVRLQGLGGKETDIQSD 272
Query: 161 ILVQGREGLNRAIDGDTVAVRLLPESQWSAPLELVLEDEGSGEDEEGEDGKLIKGNKTVP 220
I + G + NRAI GD VAV LLP+S+W + E+E DE+ D +
Sbjct: 273 IFIHGTKPRNRAIHGDLVAVELLPKSEWKGRTGALCENET---DEKVGDMQ--------- 320
Query: 221 PAERRPTGQIVGIIKRKWRQYCGIL-----QPNPLAGSSRHLFVPAERKIPKIRVETRQI 275
AE PTG++VGI++R WR Y + + L +P + +IPKIR+ T+Q
Sbjct: 321 -AEVMPTGRVVGIMQRNWRDYVVTFPAKEDTETQGKNTQKVLVMPWDYRIPKIRISTQQA 379
Query: 276 ATLSGQRIVVAIDSWPRHSRYPQGHFVRALGPIGDKDTENEVLLLEHDVPHSKFSDLVLS 335
L R+VV IDSW +S YP GHFVRALG G+ + E +L+E+ + + FS+ L+
Sbjct: 380 EALQNYRVVVRIDSWESNSLYPNGHFVRALGRAGNLEAEIATILVENSISLNPFSEAQLA 439
Query: 336 YLPP----MPWE 343
+P PW+
Sbjct: 440 EMPSNTHENPWQ 451
Score = 71.6 bits (174), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 36/69 (52%), Positives = 44/69 (63%), Gaps = 1/69 (1%)
Query: 405 AVYFSSGMLQQSDFHHYGLATPIYTHFTSPIRRYADIIVHRLLAACIGADATYPSLLDKK 464
A YFS+G + +F+HYGLA YTHFTSPIRRYADI+VHRLL A + LL K
Sbjct: 761 ARYFSTGSYTEDEFYHYGLALEKYTHFTSPIRRYADIVVHRLLLAAVNK-GPKDHLLGNK 819
Query: 465 ASTALCYNL 473
LC ++
Sbjct: 820 DLEELCRHI 828
Score = 62.4 bits (150), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 31/57 (54%), Positives = 37/57 (64%), Gaps = 1/57 (1%)
Query: 476 DFHHYGLATPIYTHFTSPIRRYADIIVHRLLAACIGADATYPSLLDKKASTALCYNL 532
+F+HYGLA YTHFTSPIRRYADI+VHRLL A + LL K LC ++
Sbjct: 773 EFYHYGLALEKYTHFTSPIRRYADIVVHRLLLAAVNK-GPKDHLLGNKDLEELCRHI 828
Score = 43.9 bits (102), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 23/42 (54%), Positives = 29/42 (69%), Gaps = 3/42 (7%)
Query: 611 EVARRTDLR--HLDVCSVDPPGCTDIDDALHCRPLPNGNIEV 650
E R DLR HL V S+DP GC D+DDAL R LP+G++E+
Sbjct: 455 EEGDRLDLRETHL-VFSIDPKGCEDVDDALSIRVLPSGDLEL 495
>sp|Q09568|YR86_CAEEL Uncharacterized ribonuclease F48E8.6 OS=Caenorhabditis elegans
GN=F48E8.6 PE=3 SV=2
Length = 848
Score = 79.3 bits (194), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 69/254 (27%), Positives = 114/254 (44%), Gaps = 32/254 (12%)
Query: 116 LYPLHATPSEIHAGIKNQSLLQGSFQASRENFLEGQVNC-EGYDKP-ILVQGREGLNRAI 173
++ + + E AGI++ S+ +G + + +N+ E ++ +G + P +LV G++ NRA+
Sbjct: 64 IFTEYISKEETDAGIEDGSMFKGVLRINPKNYQECFLDHPKGTNHPDVLVLGQDR-NRAM 122
Query: 174 DGDTVAVRLLPESQWSAPL--------ELVLEDEGSGEDEEGEDGKLIK----------- 214
GD VAV++ P+ W E D SG+ + K K
Sbjct: 123 QGDVVAVKIKPKEDWLVNYVEYVKWWAEHKKGDRNSGKTDNNSPNKTEKRCLRNEIQDNG 182
Query: 215 -GNKTVPPAERRPTGQIVGIIKRK-WRQYCGILQPNPLAGSSRHLFVPAERKIPKIRVET 272
+ VP + G IV I+++K +R G LQ P + + LFV + ++P+I +
Sbjct: 183 VTSDEVPDSCLITIGAIVHILEKKHFRVAAGKLQLMPNSANPNVLFVATDSRVPRILIPK 242
Query: 273 RQIATLSGQR--------IVVAIDSWPRHSRYPQGHFVRALGPIGDKDTENEVLLLEHDV 324
+ R I W S Y G V+ LG G+ DTE E ++ EH +
Sbjct: 243 SDVDKEFFSRPKDFERFLYTAKITDWRAESVYADGRLVKLLGMSGEIDTETERIVYEHQI 302
Query: 325 PHSKFSDLVLSYLP 338
H +FSD L LP
Sbjct: 303 DHREFSDECLESLP 316
Score = 62.0 bits (149), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 28/49 (57%), Positives = 34/49 (69%)
Query: 404 QAVYFSSGMLQQSDFHHYGLATPIYTHFTSPIRRYADIIVHRLLAACIG 452
QA YF + + S +HH+ L YTHFTSPIRRY D+IVHR LAA +G
Sbjct: 638 QAKYFCTFEMPLSFYHHFALNVDHYTHFTSPIRRYPDVIVHRQLAAALG 686
Score = 56.6 bits (135), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 24/38 (63%), Positives = 29/38 (76%)
Query: 474 VSDFHHYGLATPIYTHFTSPIRRYADIIVHRLLAACIG 511
+S +HH+ L YTHFTSPIRRY D+IVHR LAA +G
Sbjct: 649 LSFYHHFALNVDHYTHFTSPIRRYPDVIVHRQLAAALG 686
>sp|Q8CI75|DI3L2_MOUSE DIS3-like exonuclease 2 OS=Mus musculus GN=Dis3l2 PE=1 SV=1
Length = 870
Score = 79.3 bits (194), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 55/153 (35%), Positives = 72/153 (47%), Gaps = 21/153 (13%)
Query: 310 DKDTENEVLLLEHDVPHSKF-----SDLVLSYLPPMPWEKSTGRPWCSGTSIGLSQISTG 364
+K E +LL V H F L+ + PP S +C + + S G
Sbjct: 577 NKLVEEFMLLANMAVAHKIFRTFPEQALLRRHPPPQTKMLSDLVEFCDQMGLPMDVSSAG 636
Query: 365 VISVGLEQGFP----SLLKPRTTFVFYDFPRTTRTNFILLFLFQAVYFSSGMLQ-QSDFH 419
++ L + F SL + Y P + A+YF SGMLQ Q F
Sbjct: 637 ALNKSLTKTFGDDKYSLARKEVLTNMYSRP-----------MQMALYFCSGMLQDQEQFR 685
Query: 420 HYGLATPIYTHFTSPIRRYADIIVHRLLAACIG 452
HY L P+YTHFTSPIRR+AD+IVHRLLAA +G
Sbjct: 686 HYALNVPLYTHFTSPIRRFADVIVHRLLAAALG 718
Score = 75.5 bits (184), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 76/328 (23%), Positives = 128/328 (39%), Gaps = 86/328 (26%)
Query: 99 DKLSKKEAVVETSVKDSLYPLHATPSEIHAGIKNQSLLQGSFQASRENFLEGQVNCEGYD 158
DK SK +++ K S++ + + ++ G+K +L+QG + + + F E + D
Sbjct: 34 DKKSKNKSM--RGKKKSIFETYMSKEDVSEGLKRGTLIQGVLRINPKKFHEAFIPSPDGD 91
Query: 159 KPILVQGREGLNRAIDGDTVAVRLLPESQWSA--------------------------PL 192
+ I + G NRA++GD V V+LLPE QW A PL
Sbjct: 92 RDIFIDGVVARNRALNGDLVVVKLLPEDQWKAVKPESNDKEIEATYEADIPEEGCGHHPL 151
Query: 193 E----------LVLE---DEGSGEDEEGEDGKLIKG------------------------ 215
+ +++E D+ ED G L+ G
Sbjct: 152 QQSRKGWSGPDVIIEAQFDDSDSEDRHGNTSGLVDGVKKLSISTPDRGKEDSSTPVMKDE 211
Query: 216 NKTVPPAER-------RPTGQIVGIIKRKW-RQYCGILQ----PNPLAGSSRHLFVPAER 263
N +P R + + ++V I+++K R GIL+ N LF P++
Sbjct: 212 NTPIPQDTRGLSEKSLQKSAKVVYILEKKHSRAATGILKLLADKNSDLFKKYALFSPSDH 271
Query: 264 KIPKIRVETRQI--------ATLSGQRIVVAIDSWPRHSRYPQGHFVRALGPIGDKDTEN 315
++P+I V + + + I W + G ++LG G+ + E
Sbjct: 272 RVPRIYVPLKDCPQDFMTRPKDFANTLFICRIIDWKEDCNFALGQLAKSLGQAGEIEPET 331
Query: 316 EVLLLEHDVPHSKFSDLVLSYLP-PMPW 342
E +L E+ V S FS VL LP +PW
Sbjct: 332 EGILTEYGVDFSDFSSEVLECLPQSLPW 359
Score = 66.2 bits (160), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 28/46 (60%), Positives = 34/46 (73%), Gaps = 3/46 (6%)
Query: 469 LCYNLVSD---FHHYGLATPIYTHFTSPIRRYADIIVHRLLAACIG 511
C ++ D F HY L P+YTHFTSPIRR+AD+IVHRLLAA +G
Sbjct: 673 FCSGMLQDQEQFRHYALNVPLYTHFTSPIRRFADVIVHRLLAAALG 718
Score = 43.1 bits (100), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 20/45 (44%), Positives = 28/45 (62%)
Query: 606 SITEEEVARRTDLRHLDVCSVDPPGCTDIDDALHCRPLPNGNIEV 650
+I +EV +R DLR + ++DP D+DDAL CR L +G EV
Sbjct: 360 TIPPDEVGKRRDLRKDCIFTIDPSTARDLDDALACRRLTDGTFEV 404
>sp|Q0V9R3|DI3L2_XENTR DIS3-like exonuclease 2 OS=Xenopus tropicalis GN=dis3l2 PE=2 SV=1
Length = 834
Score = 77.8 bits (190), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 71/297 (23%), Positives = 118/297 (39%), Gaps = 70/297 (23%)
Query: 116 LYPLHATPSEIHAGIKNQSLLQGSFQASRENFLEGQVNCEGYDKPILVQGREGLNRAIDG 175
++ + T E+ AG+K L+QG + + + F E + + + + G NRA++G
Sbjct: 36 VFEAYMTKEEVSAGLKRGELIQGPLRINPKKFHEAYLPSPDGVRDLFIDGVVPRNRALNG 95
Query: 176 DTVAVRLLPESQWSAPLELVLEDEGS------------------------------GEDE 205
D V V+LLP+ QW V ED+ + D
Sbjct: 96 DVVVVKLLPQEQWKVLKNDVCEDDDTPGHSTGNKQHALSPHLMKSSAKNPDLIIEAKVDS 155
Query: 206 EGEDG----------KLIKGNKTVPPAERR----------------PTGQIVGIIKRKW- 238
EDG K IK + E + T ++V I+++K
Sbjct: 156 SAEDGHESALIGCLQKEIKDQDKLGAIEEKTSKQGDPKTFSDDCFQKTAKVVYILEKKHS 215
Query: 239 RQYCGILQPNPLAGS----SRHLFVPAERKIPKIRVETRQI--------ATLSGQRIVVA 286
R G ++P S R LF P + ++P+I V T + + +
Sbjct: 216 RAATGFIKPLSDKSSDLARKRALFSPVDHRLPRIYVPLGDCPHDFAIHPETYANTLFICS 275
Query: 287 IDSWPRHSRYPQGHFVRALGPIGDKDTENEVLLLEHDVPHSKFSDLVLSYLPP-MPW 342
I +W S + +G +++LG G+ + E E +L+E+ V S F D VL LP +PW
Sbjct: 276 ITAWRDDSNFAEGKLMKSLGQAGEIEPETEGILVEYGVDFSDFPDKVLQCLPQDLPW 332
Score = 77.4 bits (189), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 57/167 (34%), Positives = 79/167 (47%), Gaps = 14/167 (8%)
Query: 292 RHSRYPQGHFVRALGPIGDKDTENEVLLLEHDVPH---SKFSDLVLSYLPPMPWEKSTGR 348
+ S PQG ++ +K E +LL V H +F + L P P K
Sbjct: 533 KESGLPQGCYIYQYRD-SNKLVEEFMLLANMAVAHHIYRRFPEEALLRRHPPPQTKMLND 591
Query: 349 --PWCSGTSIGLSQISTGVISVGLEQGFPSLLKPRTTFVFYDFPRTTRTNFILLFLFQAV 406
+C + L S+G + L F T + + TN + AV
Sbjct: 592 LIEFCDQMGLQLDFTSSGTLHKSLNDQF-------ETDEYSAARKEVLTNMCSRPMQMAV 644
Query: 407 YFSSGMLQ-QSDFHHYGLATPIYTHFTSPIRRYADIIVHRLLAACIG 452
YF +G L+ ++ FHHY L P+YTHFTSPIRR+AD+IVHRLLAA +G
Sbjct: 645 YFCTGALKDETLFHHYALNVPLYTHFTSPIRRFADVIVHRLLAASLG 691
Score = 67.0 bits (162), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 27/35 (77%), Positives = 31/35 (88%)
Query: 477 FHHYGLATPIYTHFTSPIRRYADIIVHRLLAACIG 511
FHHY L P+YTHFTSPIRR+AD+IVHRLLAA +G
Sbjct: 657 FHHYALNVPLYTHFTSPIRRFADVIVHRLLAASLG 691
Score = 52.8 bits (125), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 22/45 (48%), Positives = 32/45 (71%)
Query: 606 SITEEEVARRTDLRHLDVCSVDPPGCTDIDDALHCRPLPNGNIEV 650
+I +EE +R DLR+ + ++DP D+DDAL C+PLP+GN EV
Sbjct: 333 TIPQEEFQKRKDLRNECIFTIDPATARDLDDALSCKPLPDGNFEV 377
Score = 35.4 bits (80), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 13/18 (72%), Positives = 16/18 (88%)
Query: 537 DIDDALHCRPLPNGNIEV 554
D+DDAL C+PLP+GN EV
Sbjct: 360 DLDDALSCKPLPDGNFEV 377
>sp|Q8IYB7|DI3L2_HUMAN DIS3-like exonuclease 2 OS=Homo sapiens GN=DIS3L2 PE=1 SV=4
Length = 885
Score = 74.3 bits (181), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 34/59 (57%), Positives = 43/59 (72%), Gaps = 1/59 (1%)
Query: 395 TNFILLFLFQAVYFSSGMLQQ-SDFHHYGLATPIYTHFTSPIRRYADIIVHRLLAACIG 452
TN + A+YF SG+LQ + F HY L P+YTHFTSPIRR+AD++VHRLLAA +G
Sbjct: 662 TNMCSRPMQMALYFCSGLLQDPAQFRHYALNVPLYTHFTSPIRRFADVLVHRLLAAALG 720
Score = 65.5 bits (158), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 28/46 (60%), Positives = 34/46 (73%), Gaps = 3/46 (6%)
Query: 469 LCYNLVSD---FHHYGLATPIYTHFTSPIRRYADIIVHRLLAACIG 511
C L+ D F HY L P+YTHFTSPIRR+AD++VHRLLAA +G
Sbjct: 675 FCSGLLQDPAQFRHYALNVPLYTHFTSPIRRFADVLVHRLLAAALG 720
Score = 53.5 bits (127), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 28/90 (31%), Positives = 47/90 (52%), Gaps = 2/90 (2%)
Query: 99 DKLSKKEAVVETSVKDSLYPLHATPSEIHAGIKNQSLLQGSFQASRENFLEGQVNCEGYD 158
DK SK + K S++ + + ++ G+K +L+QG + + + F E + D
Sbjct: 34 DKKSKNRST--RGKKKSIFETYMSKEDVSEGLKRGTLIQGVLRINPKKFHEAFIPSPDGD 91
Query: 159 KPILVQGREGLNRAIDGDTVAVRLLPESQW 188
+ I + G NRA++GD V V+LLPE W
Sbjct: 92 RDIFIDGVVARNRALNGDLVVVKLLPEEHW 121
Score = 46.6 bits (109), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 20/45 (44%), Positives = 30/45 (66%)
Query: 606 SITEEEVARRTDLRHLDVCSVDPPGCTDIDDALHCRPLPNGNIEV 650
+I EE ++R DLR + ++DP D+DDAL C+PL +GN +V
Sbjct: 362 TIPPEEFSKRRDLRKDCIFTIDPSTARDLDDALSCKPLADGNFKV 406
>sp|O14040|DIS3L_SCHPO Dis3-like exonuclease C2C4.07c OS=Schizosaccharomyces pombe (strain
972 / ATCC 24843) GN=SPAC2C4.07c PE=3 SV=1
Length = 927
Score = 72.0 bits (175), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 76/275 (27%), Positives = 117/275 (42%), Gaps = 48/275 (17%)
Query: 107 VVETSVKDSLYPLHATPSEIHAGIKNQSLLQGSFQASRENFLEGQVNCEGYDKP-ILVQG 165
+V ++ K S+YPL+ + + G+K+ +L +G+ + EN E D P V G
Sbjct: 166 MVSSNAKKSVYPLYYDSATVKKGLKSGTLFKGTLRI-LENHRSAFACME--DIPDFYVDG 222
Query: 166 REGLNRAIDGDTVAVRLLPESQWSAPLELV--------------LEDEGSGEDEEGEDGK 211
NRA D V V P +P E +DE G E E +
Sbjct: 223 PIARNRAFHNDVVIVE--PVMNNDSPTEKSNFLQNGVEKVKIKDHDDELGGAMEHLERLE 280
Query: 212 LIKGNKTVP--PAERRPTGQIVGIIKR-KWRQYCGILQPNPLA---------GSSRHLFV 259
+ K+V + R ++V I KR + + GIL+ + SS +F+
Sbjct: 281 I----KSVASFKGDSRTRARVVAIEKRAEISKIVGILRAPGWSLKNVEYVSKKSSYAIFI 336
Query: 260 PAERKIPKIRVETRQIATLSGQRIV------------VAIDSWPRHSRYPQGHFVRALGP 307
P ++++P I + ++ LSG+ + V I W +SRYP G LG
Sbjct: 337 PKDKRLPFITIHKNDLSDLSGENWIENILKHHDQLFSVEITRWSIYSRYPMGVLGEKLGN 396
Query: 308 IGDKDTENEVLLLEHDVPHSKFSDLVLSYLPPMPW 342
I D + LLLE+ + S FSD VL+ LPP W
Sbjct: 397 ITDVEAYTNALLLENGISSSPFSDEVLNCLPPDDW 431
Score = 62.8 bits (151), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 30/53 (56%), Positives = 38/53 (71%), Gaps = 1/53 (1%)
Query: 396 NFILLFLFQAVYFSSGML-QQSDFHHYGLATPIYTHFTSPIRRYADIIVHRLL 447
N + L +A YF +G +++D+HHY L+ YTHFTSPIRRY DIIVHRLL
Sbjct: 729 NMAVRSLNRAEYFCTGDFGEKTDWHHYALSFNHYTHFTSPIRRYPDIIVHRLL 781
Score = 56.6 bits (135), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 24/32 (75%), Positives = 27/32 (84%)
Query: 475 SDFHHYGLATPIYTHFTSPIRRYADIIVHRLL 506
+D+HHY L+ YTHFTSPIRRY DIIVHRLL
Sbjct: 750 TDWHHYALSFNHYTHFTSPIRRYPDIIVHRLL 781
Score = 47.4 bits (111), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 20/44 (45%), Positives = 29/44 (65%)
Query: 607 ITEEEVARRTDLRHLDVCSVDPPGCTDIDDALHCRPLPNGNIEV 650
I+ EE+ +R DLR+ + ++DP D+DDA+ CR L NG EV
Sbjct: 433 ISHEEIKKRRDLRNELIITIDPETARDLDDAVSCRALDNGTYEV 476
>sp|P24276|SSD1_YEAST Protein SSD1 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c)
GN=SSD1 PE=1 SV=1
Length = 1250
Score = 63.2 bits (152), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 30/56 (53%), Positives = 38/56 (67%), Gaps = 2/56 (3%)
Query: 398 ILLF--LFQAVYFSSGMLQQSDFHHYGLATPIYTHFTSPIRRYADIIVHRLLAACI 451
ILLF + +A YF +G + + HY L PIYTHFT+P+RRYAD +VHR L A I
Sbjct: 959 ILLFKTMPRARYFIAGKVDPDQYGHYALNLPIYTHFTAPMRRYADHVVHRQLKAVI 1014
Score = 53.9 bits (128), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 22/34 (64%), Positives = 26/34 (76%)
Query: 477 FHHYGLATPIYTHFTSPIRRYADIIVHRLLAACI 510
+ HY L PIYTHFT+P+RRYAD +VHR L A I
Sbjct: 981 YGHYALNLPIYTHFTAPMRRYADHVVHRQLKAVI 1014
Score = 40.4 bits (93), Expect = 0.043, Method: Compositional matrix adjust.
Identities = 33/125 (26%), Positives = 55/125 (44%), Gaps = 21/125 (16%)
Query: 228 GQIVGIIKRKWRQY----CGILQPNPLAGSSRH---------LFVPAERKIPKIRVETR- 273
G +V ++ R Q G+L+P+ A S + F P ++K+P I + T
Sbjct: 541 GHVVAVLDRIPGQLFSGTLGLLRPSQQANSDNNKPPQSPKIAWFKPTDKKVPLIAIPTEL 600
Query: 274 -------QIATLSGQRIVVAIDSWPRHSRYPQGHFVRALGPIGDKDTENEVLLLEHDVPH 326
S + V +I WP S +P G V LG I D DTE + +L +++
Sbjct: 601 APKDFVENADKYSEKLFVASIKRWPITSLHPFGILVSELGDIHDPDTEIDSILRDNNFLS 660
Query: 327 SKFSD 331
+++ D
Sbjct: 661 NEYLD 665
Score = 34.3 bits (77), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 22/72 (30%), Positives = 39/72 (54%), Gaps = 1/72 (1%)
Query: 113 KDSLYPLHATPSEIHAGIKNQSLLQGSFQASRENFLEGQVNCEG-YDKPILVQGREGLNR 171
+ SL+ + + I I+ L+ G + +++N + V+ +G D I + G + NR
Sbjct: 337 RKSLFAPYLPQANIPELIQEGRLVAGILRVNKKNRSDAWVSTDGALDADIYICGSKDRNR 396
Query: 172 AIDGDTVAVRLL 183
A++GD VAV LL
Sbjct: 397 ALEGDLVAVELL 408
>sp|O74454|STS5_SCHPO Protein sts5 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843)
GN=sts5 PE=1 SV=1
Length = 1066
Score = 57.8 bits (138), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 70/299 (23%), Positives = 116/299 (38%), Gaps = 77/299 (25%)
Query: 113 KDSLYPLHATPSEIHAGIKNQSLLQGSFQASRENFLEGQVNCEGYDKPILVQGREGLNRA 172
+ +L+ + S I A + + L+ G S++N + V+ +G D + + G + NRA
Sbjct: 283 RKNLFSPYLPQSSIPALLAERRLVTGILIVSKKNRSDAFVSVDGLDAEVFICGSKDRNRA 342
Query: 173 IDGDTVAVRLLP-ESQWSAPLELV--------LEDEGS---------------------G 202
++GD VA+ LL + W+ LE + GS
Sbjct: 343 LEGDVVAIELLDVDEVWAGKLEKEENRRRKDPISTRGSFDNLRIDAVPFEVPQRSAIKAR 402
Query: 203 EDEEGEDGKLIKGNKTVPPAERRP--TGQIVGIIKRKWRQY----CGILQPNPLAGSSRH 256
+DE+ E L ++ A+ +P G +V +++R Q GIL+P+ A R
Sbjct: 403 DDEQVEGQTLFLLDQKQLGADEKPKYAGHVVAVLQRAPGQVFSGTLGILRPSSAANKERQ 462
Query: 257 --------------------LFVPAERKIPKIRVETRQIAT-------LSGQRIVVA-ID 288
F P+++++P I + T Q T QR+ +A I
Sbjct: 463 TSSGNQGSSNNSGNDKPKIVWFKPSDKRVPLIAIPTEQAPTDFLGNDQAYAQRLFLASIK 522
Query: 289 SWPRHSRYPQGHFVRALGPIGDKDTENEVLLLEHDVPHSKFSDLVLSYLPPMPWEKSTG 347
WP S +P G V LG + + LL + V HS+ PWE S
Sbjct: 523 RWPVTSLHPFGMLVGELGSMDSMSAQVSALLHDTGV-HSE------------PWEGSAA 568
>sp|Q9Z848|RNR_CHLPN Ribonuclease R OS=Chlamydia pneumoniae GN=rnr PE=3 SV=1
Length = 676
Score = 55.5 bits (132), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 26/48 (54%), Positives = 32/48 (66%)
Query: 420 HYGLATPIYTHFTSPIRRYADIIVHRLLAACIGADATYPSLLDKKAST 467
HYGL YTHFTSPIRRY D+IVHRLL + D T+ ++ + ST
Sbjct: 497 HYGLKLDYYTHFTSPIRRYIDLIVHRLLFNPLSIDQTHLEIIVRACST 544
Score = 55.5 bits (132), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 26/48 (54%), Positives = 32/48 (66%)
Query: 479 HYGLATPIYTHFTSPIRRYADIIVHRLLAACIGADATYPSLLDKKAST 526
HYGL YTHFTSPIRRY D+IVHRLL + D T+ ++ + ST
Sbjct: 497 HYGLKLDYYTHFTSPIRRYIDLIVHRLLFNPLSIDQTHLEIIVRACST 544
>sp|Q02146|RNR2_LACLA Ribonuclease R 2 OS=Lactococcus lactis subsp. lactis (strain
IL1403) GN=rnr2 PE=3 SV=3
Length = 665
Score = 53.9 bits (128), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 22/40 (55%), Positives = 29/40 (72%)
Query: 408 FSSGMLQQSDFHHYGLATPIYTHFTSPIRRYADIIVHRLL 447
S+ + + + H+GLA YTHFTSPIRRY D+I+HRLL
Sbjct: 486 MSTAVYSEKNTKHFGLAATNYTHFTSPIRRYPDLIIHRLL 525
Score = 52.0 bits (123), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 21/28 (75%), Positives = 24/28 (85%)
Query: 479 HYGLATPIYTHFTSPIRRYADIIVHRLL 506
H+GLA YTHFTSPIRRY D+I+HRLL
Sbjct: 498 HFGLAATNYTHFTSPIRRYPDLIIHRLL 525
>sp|Q9PR88|RNR_UREPA Ribonuclease R OS=Ureaplasma parvum serovar 3 (strain ATCC 700970)
GN=rnr PE=3 SV=1
Length = 721
Score = 53.9 bits (128), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 24/38 (63%), Positives = 28/38 (73%)
Query: 420 HYGLATPIYTHFTSPIRRYADIIVHRLLAACIGADATY 457
H+GLA+ YTHFTSPIRRY D+IVHRLL I +Y
Sbjct: 555 HFGLASDNYTHFTSPIRRYPDLIVHRLLWMFIFDSQSY 592
Score = 53.9 bits (128), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 24/38 (63%), Positives = 28/38 (73%)
Query: 479 HYGLATPIYTHFTSPIRRYADIIVHRLLAACIGADATY 516
H+GLA+ YTHFTSPIRRY D+IVHRLL I +Y
Sbjct: 555 HFGLASDNYTHFTSPIRRYPDLIVHRLLWMFIFDSQSY 592
>sp|O32231|RNR_BACSU Ribonuclease R OS=Bacillus subtilis (strain 168) GN=rnr PE=3 SV=1
Length = 779
Score = 53.5 bits (127), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 21/28 (75%), Positives = 25/28 (89%)
Query: 420 HYGLATPIYTHFTSPIRRYADIIVHRLL 447
H+GL+T YTHFTSPIRRY D+IVHRL+
Sbjct: 545 HFGLSTEFYTHFTSPIRRYPDLIVHRLI 572
Score = 53.5 bits (127), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 21/28 (75%), Positives = 25/28 (89%)
Query: 479 HYGLATPIYTHFTSPIRRYADIIVHRLL 506
H+GL+T YTHFTSPIRRY D+IVHRL+
Sbjct: 545 HFGLSTEFYTHFTSPIRRYPDLIVHRLI 572
>sp|Q9CH00|RNR1_LACLA Ribonuclease R 1 OS=Lactococcus lactis subsp. lactis (strain
IL1403) GN=rnr1 PE=3 SV=1
Length = 817
Score = 52.8 bits (125), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 25/44 (56%), Positives = 31/44 (70%), Gaps = 1/44 (2%)
Query: 420 HYGLATPIYTHFTSPIRRYADIIVHRLLAACIGADATYPSLLDK 463
H+GLA YTHFTSPIRRY D++VHRL+ IG T ++L K
Sbjct: 555 HFGLAAENYTHFTSPIRRYPDLLVHRLIRE-IGEGKTPANILQK 597
Score = 52.8 bits (125), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 25/44 (56%), Positives = 31/44 (70%), Gaps = 1/44 (2%)
Query: 479 HYGLATPIYTHFTSPIRRYADIIVHRLLAACIGADATYPSLLDK 522
H+GLA YTHFTSPIRRY D++VHRL+ IG T ++L K
Sbjct: 555 HFGLAAENYTHFTSPIRRYPDLLVHRLIRE-IGEGKTPANILQK 597
Score = 38.5 bits (88), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 16/46 (34%), Positives = 26/46 (56%)
Query: 605 KSITEEEVARRTDLRHLDVCSVDPPGCTDIDDALHCRPLPNGNIEV 650
+ + E E+ R D R+ ++D D+DDA+H + L NGN E+
Sbjct: 249 EEVPENEIVGRVDYRNEITFTIDGADAKDLDDAVHAKRLENGNYEL 294
>sp|Q9WZI1|RNR_THEMA Ribonuclease R OS=Thermotoga maritima (strain ATCC 43589 / MSB8 /
DSM 3109 / JCM 10099) GN=rnr PE=3 SV=1
Length = 710
Score = 52.8 bits (125), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 24/57 (42%), Positives = 34/57 (59%), Gaps = 1/57 (1%)
Query: 408 FSSGMLQQSDFHHYGLATPIYTHFTSPIRRYADIIVHRLLAACIGADATY-PSLLDK 463
M + H+GLA+ YTHFTSPIRRY D++VHRLL + + + P ++K
Sbjct: 529 MKRAMYSAVNIGHFGLASYAYTHFTSPIRRYPDLVVHRLLKLYLEQNGYFTPEQIEK 585
Score = 52.0 bits (123), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 23/45 (51%), Positives = 32/45 (71%), Gaps = 1/45 (2%)
Query: 479 HYGLATPIYTHFTSPIRRYADIIVHRLLAACIGADATY-PSLLDK 522
H+GLA+ YTHFTSPIRRY D++VHRLL + + + P ++K
Sbjct: 541 HFGLASYAYTHFTSPIRRYPDLVVHRLLKLYLEQNGYFTPEQIEK 585
Score = 35.4 bits (80), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 14/41 (34%), Positives = 23/41 (56%)
Query: 607 ITEEEVARRTDLRHLDVCSVDPPGCTDIDDALHCRPLPNGN 647
+ ++++ R DLR + ++D D DDA+ LPNGN
Sbjct: 238 VRKKDLVGRKDLRDKVIVTIDGEDAKDFDDAISVEKLPNGN 278
>sp|O94525|YBU1_SCHPO Uncharacterized ribonuclease C609.01 OS=Schizosaccharomyces pombe
(strain 972 / ATCC 24843) GN=SPBC609.01 PE=3 SV=1
Length = 1157
Score = 52.0 bits (123), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 66/297 (22%), Positives = 108/297 (36%), Gaps = 84/297 (28%)
Query: 135 LLQGSFQASRENFLEGQVNCEGYDKPILVQGREGLNRAIDGDTVAVRLLPESQ------- 187
LL G+ +R+N + V + D+PI + G + NR ++GD VAV LL ++
Sbjct: 310 LLVGTLHINRKNRSDAYVITDVLDEPIFICGSKDRNRTLEGDLVAVELLDVNEIMQTKRE 369
Query: 188 ----------------------------WSAPLEL-----VLEDEGSGEDEE------GE 208
S P+ L VL E S E + G+
Sbjct: 370 KEEKKIRRNLSLSGSSKYSVNSKAKMMSISTPMALGMNRGVLSFERSIEKRKNDYEVTGQ 429
Query: 209 DGKLIKGNKTVPPAERRPTGQIVGIIKRKWRQYC----GILQPNPLA--GSSRH------ 256
+ P + + G +V ++ R + C + +PN LA S H
Sbjct: 430 SLSFVDDVSLTPDSAPKYAGHVVAVLNRPSGETCSGTLALYRPNSLALKNQSSHRRNSST 489
Query: 257 ------------LFVPAERKIPKIRVETRQIA--------TLSGQRIVVAIDSWPRHSRY 296
F P++++IP I + + Q+ + + I WP S +
Sbjct: 490 SSGETGKGPKIVWFKPSDKRIPLIAISSDQVPPTFFTNNDDFKDKVFLAGIKRWPTTSLH 549
Query: 297 PQGHFVRALGPIGDKDTENEVLLLE-----HDVPHSKFSDLVLSYLPPMPWEKSTGR 348
P G ++G IGD E + +L + +D P S S V P+P E+ R
Sbjct: 550 PFGTLYESIGTIGDPKVEYKAILHDFSCHTYDFPES-LSHCVKRLPTPIPAEELQKR 605
Score = 40.0 bits (92), Expect = 0.059, Method: Compositional matrix adjust.
Identities = 21/71 (29%), Positives = 29/71 (40%)
Query: 408 FSSGMLQQSDFHHYGLATPIYTHFTSPIRRYADIIVHRLLAACIGADATYPSLLDKKAST 467
++ G D H+ + P YTHF P RRY DI V R L + S
Sbjct: 879 YTIGTSNAKDVSHFVFSCPYYTHFCHPTRRYIDICVQRQLREAFDGRPDFSKDYRSLLSI 938
Query: 468 ALCYNLVSDFH 478
N +S+F+
Sbjct: 939 TQSCNTLSNFY 949
Score = 38.9 bits (89), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 16/31 (51%), Positives = 18/31 (58%)
Query: 476 DFHHYGLATPIYTHFTSPIRRYADIIVHRLL 506
D H+ + P YTHF P RRY DI V R L
Sbjct: 888 DVSHFVFSCPYYTHFCHPTRRYIDICVQRQL 918
>sp|O67834|RNR_AQUAE Ribonuclease R OS=Aquifex aeolicus (strain VF5) GN=rnr PE=3 SV=1
Length = 705
Score = 51.6 bits (122), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 29/78 (37%), Positives = 38/78 (48%), Gaps = 3/78 (3%)
Query: 385 VFYDFPRTTRTNFILLFLFQAVYFSSGMLQQSDFHHYGLATPIYTHFTSPIRRYADIIVH 444
+ DF N + +A+ + + H+GLA Y HFTSPIRRY DIIVH
Sbjct: 502 IIEDFEGRPEENLVRFLTLRAM--ARAKYSPHNVGHFGLALEHYAHFTSPIRRYPDIIVH 559
Query: 445 RLLAACI-GADATYPSLL 461
RLL + G + Y L
Sbjct: 560 RLLKKALRGEEIDYEKTL 577
Score = 51.6 bits (122), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 25/43 (58%), Positives = 28/43 (65%), Gaps = 1/43 (2%)
Query: 479 HYGLATPIYTHFTSPIRRYADIIVHRLLAACI-GADATYPSLL 520
H+GLA Y HFTSPIRRY DIIVHRLL + G + Y L
Sbjct: 535 HFGLALEHYAHFTSPIRRYPDIIVHRLLKKALRGEEIDYEKTL 577
>sp|Q9PK00|RNR_CHLMU Ribonuclease R OS=Chlamydia muridarum (strain MoPn / Nigg) GN=rnr
PE=3 SV=1
Length = 692
Score = 51.6 bits (122), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 22/28 (78%), Positives = 23/28 (82%)
Query: 420 HYGLATPIYTHFTSPIRRYADIIVHRLL 447
HYGL YTHFTSPIRRY D+IVHRLL
Sbjct: 494 HYGLCLDYYTHFTSPIRRYVDLIVHRLL 521
Score = 51.6 bits (122), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 22/28 (78%), Positives = 23/28 (82%)
Query: 479 HYGLATPIYTHFTSPIRRYADIIVHRLL 506
HYGL YTHFTSPIRRY D+IVHRLL
Sbjct: 494 HYGLCLDYYTHFTSPIRRYVDLIVHRLL 521
>sp|O84402|RNR_CHLTR Ribonuclease R OS=Chlamydia trachomatis (strain D/UW-3/Cx) GN=rnr
PE=3 SV=1
Length = 694
Score = 51.6 bits (122), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 22/28 (78%), Positives = 23/28 (82%)
Query: 420 HYGLATPIYTHFTSPIRRYADIIVHRLL 447
HYGL YTHFTSPIRRY D+IVHRLL
Sbjct: 494 HYGLCLDYYTHFTSPIRRYVDLIVHRLL 521
Score = 51.6 bits (122), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 22/28 (78%), Positives = 23/28 (82%)
Query: 479 HYGLATPIYTHFTSPIRRYADIIVHRLL 506
HYGL YTHFTSPIRRY D+IVHRLL
Sbjct: 494 HYGLCLDYYTHFTSPIRRYVDLIVHRLL 521
>sp|Q8K917|RNR_BUCAP Ribonuclease R OS=Buchnera aphidicola subsp. Schizaphis graminum
(strain Sg) GN=rnr PE=3 SV=1
Length = 726
Score = 51.2 bits (121), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 28/66 (42%), Positives = 36/66 (54%), Gaps = 10/66 (15%)
Query: 479 HYGLATPIYTHFTSPIRRYADIIVHRLLAACIGADATYPSLLDKKASTALCYNLPGCTDI 538
H+GL+ Y HFTSPIRRY D++VHR++ + L +K S YNL T I
Sbjct: 559 HFGLSLSSYVHFTSPIRRYPDLLVHRVIKNLL--------LKEKNLSKYHLYNLNEVTKI 610
Query: 539 DDALHC 544
LHC
Sbjct: 611 --GLHC 614
Score = 45.8 bits (107), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 23/54 (42%), Positives = 31/54 (57%), Gaps = 8/54 (14%)
Query: 420 HYGLATPIYTHFTSPIRRYADIIVHRLLAACIGADATYPSLLDKKASTALCYNL 473
H+GL+ Y HFTSPIRRY D++VHR++ + L +K S YNL
Sbjct: 559 HFGLSLSSYVHFTSPIRRYPDLLVHRVIKNLL--------LKEKNLSKYHLYNL 604
Score = 40.0 bits (92), Expect = 0.064, Method: Compositional matrix adjust.
Identities = 16/43 (37%), Positives = 23/43 (53%)
Query: 604 RKSITEEEVARRTDLRHLDVCSVDPPGCTDIDDALHCRPLPNG 646
+ I E++ R DLRHL ++D D DDA+ C+ NG
Sbjct: 251 KSKINEKDFKNRIDLRHLPFFTIDEEDARDFDDAIFCKKKTNG 293
>sp|Q98QL0|RNR_MYCPU Ribonuclease R OS=Mycoplasma pulmonis (strain UAB CTIP) GN=rnr PE=3
SV=1
Length = 725
Score = 50.8 bits (120), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 27/90 (30%), Positives = 48/90 (53%), Gaps = 10/90 (11%)
Query: 367 SVGLEQGFPSLLKPRTTFVFYD-FPRTTRT----NFILLFLFQAVYFSSGMLQQSDFHHY 421
++G++ P + P+ F D F + + NF+ L + + + + + H+
Sbjct: 475 TLGIDFDTPKITSPKA---FSDSFEKIKQNYQIDNFVKLMVLRTM--EKAIYSDKNIGHF 529
Query: 422 GLATPIYTHFTSPIRRYADIIVHRLLAACI 451
GLA+ Y+HFTSPIRRY D+ +HRL+ +
Sbjct: 530 GLASSYYSHFTSPIRRYPDLQLHRLIKQMV 559
Score = 49.3 bits (116), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 18/32 (56%), Positives = 25/32 (78%)
Query: 479 HYGLATPIYTHFTSPIRRYADIIVHRLLAACI 510
H+GLA+ Y+HFTSPIRRY D+ +HRL+ +
Sbjct: 528 HFGLASSYYSHFTSPIRRYPDLQLHRLIKQMV 559
>sp|A6VN85|RNB_ACTSZ Exoribonuclease 2 OS=Actinobacillus succinogenes (strain ATCC 55618
/ 130Z) GN=rnb PE=3 SV=1
Length = 659
Score = 49.7 bits (117), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 28/73 (38%), Positives = 38/73 (52%), Gaps = 2/73 (2%)
Query: 479 HYGLATPIYTHFTSPIRRYADIIVHRLLAACIGADATYPSLLD--KKASTALCYNLPGCT 536
H+GL Y +TSPIR+Y+D++ HRL+ ACI A D + A N
Sbjct: 499 HFGLGLTGYATWTSPIRKYSDMVNHRLIKACIAEQACLKPSDDILTRLQEARKQNRMVER 558
Query: 537 DIDDALHCRPLPN 549
DI D L+CR L +
Sbjct: 559 DIADWLYCRYLAD 571
Score = 46.2 bits (108), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 18/36 (50%), Positives = 25/36 (69%)
Query: 420 HYGLATPIYTHFTSPIRRYADIIVHRLLAACIGADA 455
H+GL Y +TSPIR+Y+D++ HRL+ ACI A
Sbjct: 499 HFGLGLTGYATWTSPIRKYSDMVNHRLIKACIAEQA 534
>sp|Q65SI5|RNB_MANSM Exoribonuclease 2 OS=Mannheimia succiniciproducens (strain MBEL55E)
GN=rnb PE=3 SV=1
Length = 659
Score = 48.9 bits (115), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 26/78 (33%), Positives = 40/78 (51%), Gaps = 12/78 (15%)
Query: 479 HYGLATPIYTHFTSPIRRYADIIVHRLLAACIG-------ADATYPSLLDKKASTALCYN 531
H+GL Y +TSPIR+Y+D++ HRL+ AC+ +D T L + + +
Sbjct: 500 HFGLGLTGYATWTSPIRKYSDMVNHRLIKACLANRECVKPSDETLARLQEARKQNRMVER 559
Query: 532 LPGCTDIDDALHCRPLPN 549
DI D L+CR L +
Sbjct: 560 -----DIADWLYCRYLAD 572
Score = 44.7 bits (104), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 20/65 (30%), Positives = 35/65 (53%), Gaps = 7/65 (10%)
Query: 420 HYGLATPIYTHFTSPIRRYADIIVHRLLAACIG-------ADATYPSLLDKKASTALCYN 472
H+GL Y +TSPIR+Y+D++ HRL+ AC+ +D T L + + +
Sbjct: 500 HFGLGLTGYATWTSPIRKYSDMVNHRLIKACLANRECVKPSDETLARLQEARKQNRMVER 559
Query: 473 LVSDF 477
++D+
Sbjct: 560 DIADW 564
>sp|P56123|RNR_HELPY Ribonuclease R OS=Helicobacter pylori (strain ATCC 700392 / 26695)
GN=rnr PE=3 SV=1
Length = 644
Score = 48.5 bits (114), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 23/43 (53%), Positives = 29/43 (67%), Gaps = 3/43 (6%)
Query: 413 LQQSDFHHYGLATPIYTHFTSPIRRYADIIVHRLLAACIGADA 455
LQ+S H+GL YTHFTSPIRRY+D+ +HRLL + A
Sbjct: 493 LQES---HFGLGFASYTHFTSPIRRYSDLALHRLLKELLFYQA 532
Score = 48.1 bits (113), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 20/36 (55%), Positives = 25/36 (69%)
Query: 479 HYGLATPIYTHFTSPIRRYADIIVHRLLAACIGADA 514
H+GL YTHFTSPIRRY+D+ +HRLL + A
Sbjct: 497 HFGLGFASYTHFTSPIRRYSDLALHRLLKELLFYQA 532
>sp|Q9ZJX9|RNR_HELPJ Ribonuclease R OS=Helicobacter pylori (strain J99) GN=rnr PE=3 SV=1
Length = 644
Score = 48.1 bits (113), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 20/36 (55%), Positives = 25/36 (69%)
Query: 420 HYGLATPIYTHFTSPIRRYADIIVHRLLAACIGADA 455
H+GL YTHFTSPIRRY+D+ +HRLL + A
Sbjct: 497 HFGLGFASYTHFTSPIRRYSDLALHRLLKELLFHQA 532
Score = 48.1 bits (113), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 20/36 (55%), Positives = 25/36 (69%)
Query: 479 HYGLATPIYTHFTSPIRRYADIIVHRLLAACIGADA 514
H+GL YTHFTSPIRRY+D+ +HRLL + A
Sbjct: 497 HFGLGFASYTHFTSPIRRYSDLALHRLLKELLFHQA 532
>sp|P75529|RNR_MYCPN Ribonuclease R OS=Mycoplasma pneumoniae (strain ATCC 29342 / M129)
GN=rnr PE=3 SV=1
Length = 726
Score = 47.8 bits (112), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 20/37 (54%), Positives = 27/37 (72%)
Query: 470 CYNLVSDFHHYGLATPIYTHFTSPIRRYADIIVHRLL 506
+ +V+ H+ + + YTHFTSPIRRYAD+ VHRLL
Sbjct: 552 AFYIVNPLIHFSIGSHHYTHFTSPIRRYADLTVHRLL 588
Score = 47.0 bits (110), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 19/28 (67%), Positives = 23/28 (82%)
Query: 420 HYGLATPIYTHFTSPIRRYADIIVHRLL 447
H+ + + YTHFTSPIRRYAD+ VHRLL
Sbjct: 561 HFSIGSHHYTHFTSPIRRYADLTVHRLL 588
>sp|Q1LTG8|RNB_BAUCH Exoribonuclease 2 OS=Baumannia cicadellinicola subsp. Homalodisca
coagulata GN=rnb PE=3 SV=1
Length = 645
Score = 47.0 bits (110), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 19/34 (55%), Positives = 26/34 (76%)
Query: 420 HYGLATPIYTHFTSPIRRYADIIVHRLLAACIGA 453
H+GL +Y +TSPIR+Y+D++ HRLL A IGA
Sbjct: 486 HFGLGLEVYATWTSPIRKYSDMMNHRLLKALIGA 519
Score = 47.0 bits (110), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 19/34 (55%), Positives = 26/34 (76%)
Query: 479 HYGLATPIYTHFTSPIRRYADIIVHRLLAACIGA 512
H+GL +Y +TSPIR+Y+D++ HRLL A IGA
Sbjct: 486 HFGLGLEVYATWTSPIRKYSDMMNHRLLKALIGA 519
>sp|Q2NST6|RNB_SODGM Exoribonuclease 2 OS=Sodalis glossinidius (strain morsitans) GN=rnb
PE=3 SV=1
Length = 644
Score = 46.6 bits (109), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 29/68 (42%), Positives = 36/68 (52%), Gaps = 3/68 (4%)
Query: 454 DATYPSLLDKKASTALCYNLVSDFH--HYGLATPIYTHFTSPIRRYADIIVHRLLAACIG 511
DA S LD + + VS H+GL Y +TSPIR+Y D+I HRLL A IG
Sbjct: 458 DAQPTSYLDSRIRRFQTFAEVSTVPGPHFGLGLDAYATWTSPIRKYGDMINHRLLKALIG 517
Query: 512 -ADATYPS 518
DA P+
Sbjct: 518 VGDAERPN 525
Score = 46.2 bits (108), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 28/81 (34%), Positives = 39/81 (48%), Gaps = 15/81 (18%)
Query: 420 HYGLATPIYTHFTSPIRRYADIIVHRLLAACIG-ADATYPS------LLDKKASTALCYN 472
H+GL Y +TSPIR+Y D+I HRLL A IG DA P+ L +++ +
Sbjct: 485 HFGLGLDAYATWTSPIRKYGDMINHRLLKALIGVGDAERPNEEVTLRLAERRRQNRMAER 544
Query: 473 LVSDFHHYGLATPIYTHFTSP 493
V D+ +Y F P
Sbjct: 545 DVGDW--------LYARFLQP 557
Score = 37.0 bits (84), Expect = 0.49, Method: Compositional matrix adjust.
Identities = 17/43 (39%), Positives = 24/43 (55%)
Query: 609 EEEVARRTDLRHLDVCSVDPPGCTDIDDALHCRPLPNGNIEVT 651
+E+ R DL LD ++D D+DDA+H P PNG +T
Sbjct: 184 QEDGPAREDLTALDFITIDSASTEDMDDAIHLAPAPNGAWVMT 226
>sp|P44907|RNR_HAEIN Ribonuclease R OS=Haemophilus influenzae (strain ATCC 51907 / DSM
11121 / KW20 / Rd) GN=rnr PE=3 SV=1
Length = 782
Score = 46.6 bits (109), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 28/61 (45%), Positives = 34/61 (55%), Gaps = 10/61 (16%)
Query: 397 FILLFLFQAVYFSSGMLQQSDFHHYGLATPIYTHFTSPIRRYADIIVHR----LLAACIG 452
+L L QAVY + + H+GLA Y HFTSPIRRY D+ +HR LLA G
Sbjct: 545 MLLRSLSQAVYHAD------NIGHFGLALEEYAHFTSPIRRYPDLTLHRGIKYLLAKEQG 598
Query: 453 A 453
A
Sbjct: 599 A 599
Score = 44.3 bits (103), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 22/38 (57%), Positives = 25/38 (65%), Gaps = 4/38 (10%)
Query: 479 HYGLATPIYTHFTSPIRRYADIIVHR----LLAACIGA 512
H+GLA Y HFTSPIRRY D+ +HR LLA GA
Sbjct: 562 HFGLALEEYAHFTSPIRRYPDLTLHRGIKYLLAKEQGA 599
>sp|P40611|RNR_VIBPA Ribonuclease R OS=Vibrio parahaemolyticus serotype O3:K6 (strain
RIMD 2210633) GN=rnr PE=3 SV=2
Length = 835
Score = 46.6 bits (109), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 23/58 (39%), Positives = 33/58 (56%), Gaps = 6/58 (10%)
Query: 397 FILLFLFQAVYFSSGMLQQSDFHHYGLATPIYTHFTSPIRRYADIIVHRLLAACIGAD 454
+L + QAVY + + H+GLA Y HFTSPIRRY D+++HR + I +
Sbjct: 545 MLLRSMKQAVYNAD------NAGHFGLALKRYAHFTSPIRRYPDLLLHRAIKYLIAKE 596
Score = 45.4 bits (106), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 18/35 (51%), Positives = 24/35 (68%)
Query: 479 HYGLATPIYTHFTSPIRRYADIIVHRLLAACIGAD 513
H+GLA Y HFTSPIRRY D+++HR + I +
Sbjct: 562 HFGLALKRYAHFTSPIRRYPDLLLHRAIKYLIAKE 596
>sp|Q9KNY1|RNR_VIBCH Ribonuclease R OS=Vibrio cholerae serotype O1 (strain ATCC 39315 /
El Tor Inaba N16961) GN=rnr PE=3 SV=1
Length = 821
Score = 46.2 bits (108), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 23/56 (41%), Positives = 32/56 (57%), Gaps = 6/56 (10%)
Query: 397 FILLFLFQAVYFSSGMLQQSDFHHYGLATPIYTHFTSPIRRYADIIVHRLLAACIG 452
+L + QAVY + + H+GLA Y HFTSPIRRY D+++HR + I
Sbjct: 545 MLLRSMKQAVYNAD------NAGHFGLALKRYAHFTSPIRRYPDLLLHRAIKYLIA 594
Score = 45.1 bits (105), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 18/33 (54%), Positives = 23/33 (69%)
Query: 479 HYGLATPIYTHFTSPIRRYADIIVHRLLAACIG 511
H+GLA Y HFTSPIRRY D+++HR + I
Sbjct: 562 HFGLALKRYAHFTSPIRRYPDLLLHRAIKYLIA 594
>sp|P57628|RNR_BUCAI Ribonuclease R OS=Buchnera aphidicola subsp. Acyrthosiphon pisum
(strain APS) GN=rnr PE=3 SV=2
Length = 731
Score = 46.2 bits (108), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 18/37 (48%), Positives = 25/37 (67%)
Query: 420 HYGLATPIYTHFTSPIRRYADIIVHRLLAACIGADAT 456
H+GL+ Y HFTSPIRRY D+I+HR++ + D
Sbjct: 557 HFGLSLSSYVHFTSPIRRYPDLILHRVIKYLLFKDKN 593
Score = 46.2 bits (108), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 18/37 (48%), Positives = 25/37 (67%)
Query: 479 HYGLATPIYTHFTSPIRRYADIIVHRLLAACIGADAT 515
H+GL+ Y HFTSPIRRY D+I+HR++ + D
Sbjct: 557 HFGLSLSSYVHFTSPIRRYPDLILHRVIKYLLFKDKN 593
>sp|D0Z8E6|RNB_EDWTE Exoribonuclease 2 OS=Edwardsiella tarda (strain EIB202) GN=rnb PE=3
SV=2
Length = 647
Score = 45.8 bits (107), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 22/40 (55%), Positives = 27/40 (67%), Gaps = 1/40 (2%)
Query: 420 HYGLATPIYTHFTSPIRRYADIIVHRLLAACI-GADATYP 458
H+GL Y +TSPIR+Y D++ HRLL A I GA AT P
Sbjct: 486 HFGLGLEAYATWTSPIRKYGDMVNHRLLKALIAGAPATRP 525
Score = 45.8 bits (107), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 22/40 (55%), Positives = 27/40 (67%), Gaps = 1/40 (2%)
Query: 479 HYGLATPIYTHFTSPIRRYADIIVHRLLAACI-GADATYP 517
H+GL Y +TSPIR+Y D++ HRLL A I GA AT P
Sbjct: 486 HFGLGLEAYATWTSPIRKYGDMVNHRLLKALIAGAPATRP 525
>sp|A0KFR1|RNB_AERHH Exoribonuclease 2 OS=Aeromonas hydrophila subsp. hydrophila (strain
ATCC 7966 / NCIB 9240) GN=rnb PE=3 SV=1
Length = 673
Score = 45.8 bits (107), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 37/93 (39%), Positives = 44/93 (47%), Gaps = 7/93 (7%)
Query: 461 LDKKASTALCYNLVSD--FHHYGLATPIYTHFTSPIRRYADIIVHRLLAACIGAD--ATY 516
LD K Y L+S HYGL Y +TSPIR+Y D++ HRLL A I
Sbjct: 464 LDGKIRRFQSYALMSAEPGAHYGLGLDAYATWTSPIRKYGDMVNHRLLKAVIAGKTPGER 523
Query: 517 PSLLDKKASTALCYNLPGCT--DIDDALHCRPL 547
PSL + TA C L DI D L+ R L
Sbjct: 524 PSLELTEHLTA-CRRLHRMVERDIGDWLYVRYL 555
Score = 44.3 bits (103), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 19/46 (41%), Positives = 26/46 (56%)
Query: 407 YFSSGMLQQSDFHHYGLATPIYTHFTSPIRRYADIIVHRLLAACIG 452
+ S ++ HYGL Y +TSPIR+Y D++ HRLL A I
Sbjct: 471 FQSYALMSAEPGAHYGLGLDAYATWTSPIRKYGDMVNHRLLKAVIA 516
>sp|P54084|RNR_THIFE Ribonuclease R (Fragment) OS=Thiobacillus ferrooxidans GN=rnr PE=3
SV=2
Length = 439
Score = 45.8 bits (107), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 35/132 (26%), Positives = 58/132 (43%), Gaps = 9/132 (6%)
Query: 210 GKLIKGNKTVPPAERRPTGQIVGIIKRKWRQYCGILQPNPLAGSSRHLFVPAERKIPK-- 267
G I G R G +V I++R + G A + H VP +R+IP+
Sbjct: 130 GDTILGRAVGEDRRGRIEGAVVRILERALKHIVG----RYYADNGVHYVVPEDRRIPQEF 185
Query: 268 --IRVETRQIATLSGQRIVVAIDSWPRHSRYPQGHFVRALGPIGDKDTENEVLLLEHDVP 325
+ E + + GQ +++ I +P PQGH V LG E E+ + + +P
Sbjct: 186 AVVEGEGEGLTPVHGQIVILEITQYPDGRNMPQGHVVEILGEHMAPGMEVEIAVRNYGLP 245
Query: 326 HSKFSDLVLSYL 337
H ++ D VL+ +
Sbjct: 246 H-QWPDEVLAEI 256
>sp|Q0T5B1|RNB_SHIF8 Exoribonuclease 2 OS=Shigella flexneri serotype 5b (strain 8401)
GN=rnb PE=3 SV=1
Length = 644
Score = 45.4 bits (106), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 22/41 (53%), Positives = 26/41 (63%), Gaps = 1/41 (2%)
Query: 420 HYGLATPIYTHFTSPIRRYADIIVHRLLAACI-GADATYPS 459
H+GL Y +TSPIR+Y D+I HRLL A I G AT P
Sbjct: 484 HFGLGLEAYATWTSPIRKYGDMINHRLLKAVIKGETATRPQ 524
Score = 45.4 bits (106), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 22/41 (53%), Positives = 26/41 (63%), Gaps = 1/41 (2%)
Query: 479 HYGLATPIYTHFTSPIRRYADIIVHRLLAACI-GADATYPS 518
H+GL Y +TSPIR+Y D+I HRLL A I G AT P
Sbjct: 484 HFGLGLEAYATWTSPIRKYGDMINHRLLKAVIKGETATRPQ 524
>sp|Q1RC77|RNB_ECOUT Exoribonuclease 2 OS=Escherichia coli (strain UTI89 / UPEC) GN=rnb
PE=3 SV=1
Length = 644
Score = 45.4 bits (106), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 22/41 (53%), Positives = 26/41 (63%), Gaps = 1/41 (2%)
Query: 420 HYGLATPIYTHFTSPIRRYADIIVHRLLAACI-GADATYPS 459
H+GL Y +TSPIR+Y D+I HRLL A I G AT P
Sbjct: 484 HFGLGLEAYATWTSPIRKYGDMINHRLLKAVIKGETATRPQ 524
Score = 45.4 bits (106), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 22/41 (53%), Positives = 26/41 (63%), Gaps = 1/41 (2%)
Query: 479 HYGLATPIYTHFTSPIRRYADIIVHRLLAACI-GADATYPS 518
H+GL Y +TSPIR+Y D+I HRLL A I G AT P
Sbjct: 484 HFGLGLEAYATWTSPIRKYGDMINHRLLKAVIKGETATRPQ 524
Score = 35.8 bits (81), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 14/36 (38%), Positives = 22/36 (61%)
Query: 615 RTDLRHLDVCSVDPPGCTDIDDALHCRPLPNGNIEV 650
R DL LD ++D D+DDAL + LP+G +++
Sbjct: 189 REDLTALDFVTIDSASTEDMDDALFAKALPDGKLQL 224
>sp|A1AAQ4|RNB_ECOK1 Exoribonuclease 2 OS=Escherichia coli O1:K1 / APEC GN=rnb PE=3 SV=1
Length = 644
Score = 45.4 bits (106), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 22/41 (53%), Positives = 26/41 (63%), Gaps = 1/41 (2%)
Query: 420 HYGLATPIYTHFTSPIRRYADIIVHRLLAACI-GADATYPS 459
H+GL Y +TSPIR+Y D+I HRLL A I G AT P
Sbjct: 484 HFGLGLEAYATWTSPIRKYGDMINHRLLKAVIKGETATRPQ 524
Score = 45.4 bits (106), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 22/41 (53%), Positives = 26/41 (63%), Gaps = 1/41 (2%)
Query: 479 HYGLATPIYTHFTSPIRRYADIIVHRLLAACI-GADATYPS 518
H+GL Y +TSPIR+Y D+I HRLL A I G AT P
Sbjct: 484 HFGLGLEAYATWTSPIRKYGDMINHRLLKAVIKGETATRPQ 524
Score = 35.8 bits (81), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 14/36 (38%), Positives = 22/36 (61%)
Query: 615 RTDLRHLDVCSVDPPGCTDIDDALHCRPLPNGNIEV 650
R DL LD ++D D+DDAL + LP+G +++
Sbjct: 189 REDLTALDFVTIDSASTEDMDDALFAKALPDGKLQL 224
>sp|B7MLW3|RNB_ECO45 Exoribonuclease 2 OS=Escherichia coli O45:K1 (strain S88 / ExPEC)
GN=rnb PE=3 SV=1
Length = 644
Score = 45.4 bits (106), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 22/41 (53%), Positives = 26/41 (63%), Gaps = 1/41 (2%)
Query: 420 HYGLATPIYTHFTSPIRRYADIIVHRLLAACI-GADATYPS 459
H+GL Y +TSPIR+Y D+I HRLL A I G AT P
Sbjct: 484 HFGLGLEAYATWTSPIRKYGDMINHRLLKAVIKGETATRPQ 524
Score = 45.4 bits (106), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 22/41 (53%), Positives = 26/41 (63%), Gaps = 1/41 (2%)
Query: 479 HYGLATPIYTHFTSPIRRYADIIVHRLLAACI-GADATYPS 518
H+GL Y +TSPIR+Y D+I HRLL A I G AT P
Sbjct: 484 HFGLGLEAYATWTSPIRKYGDMINHRLLKAVIKGETATRPQ 524
Score = 35.8 bits (81), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 14/36 (38%), Positives = 22/36 (61%)
Query: 615 RTDLRHLDVCSVDPPGCTDIDDALHCRPLPNGNIEV 650
R DL LD ++D D+DDAL + LP+G +++
Sbjct: 189 REDLTALDFVTIDSASTEDMDDALFAKALPDGKLQL 224
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.319 0.137 0.414
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 256,087,854
Number of Sequences: 539616
Number of extensions: 11397823
Number of successful extensions: 25169
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 140
Number of HSP's successfully gapped in prelim test: 8
Number of HSP's that attempted gapping in prelim test: 24560
Number of HSP's gapped (non-prelim): 562
length of query: 654
length of database: 191,569,459
effective HSP length: 124
effective length of query: 530
effective length of database: 124,657,075
effective search space: 66068249750
effective search space used: 66068249750
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 65 (29.6 bits)