Query psy4856
Match_columns 654
No_of_seqs 337 out of 1893
Neff 6.6
Searched_HMMs 29240
Date Fri Aug 16 19:25:00 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy4856.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/4856hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2wp8_J Exosome complex exonucl 100.0 9E-123 3E-127 1096.9 48.2 597 1-651 108-930 (977)
2 2vnu_D Exosome complex exonucl 100.0 2.2E-96 7E-101 857.5 40.2 489 112-651 9-713 (760)
3 2id0_A Exoribonuclease 2; RNAs 100.0 1.4E-80 4.8E-85 713.5 35.5 421 123-651 8-604 (644)
4 2r7d_A Ribonuclease II family 100.0 5.2E-50 1.8E-54 443.8 18.5 273 294-646 20-429 (469)
5 2dok_A Telomerase-binding prot 98.3 8.4E-08 2.9E-12 93.5 0.6 79 9-90 74-182 (186)
6 1luz_A Protein K3, protein K2; 97.6 5.3E-06 1.8E-10 71.0 -1.2 47 600-649 5-52 (88)
7 2ckz_B C25, DNA-directed RNA p 97.6 9.7E-06 3.3E-10 80.9 -0.3 52 597-652 72-123 (218)
8 3ayh_B DNA-directed RNA polyme 97.3 3.1E-05 1.1E-09 76.4 -0.3 51 597-652 72-122 (203)
9 1a62_A RHO; transcription term 97.1 0.00048 1.6E-08 63.1 5.5 50 135-187 50-106 (130)
10 1kl9_A Eukaryotic translation 97.0 0.00011 3.8E-09 71.1 0.5 51 598-650 4-57 (182)
11 2a19_A EIF-2- alpha, eukaryoti 96.9 0.00017 5.9E-09 69.4 0.4 49 599-649 5-56 (175)
12 3h0g_G DNA-directed RNA polyme 96.7 9.2E-05 3.2E-09 71.1 -3.1 50 596-651 74-123 (172)
13 2c35_B Human RPB7, DNA-directe 96.7 0.00048 1.6E-08 65.9 1.8 49 597-651 72-120 (172)
14 4ayb_E DNA-directed RNA polyme 96.7 0.00085 2.9E-08 64.6 3.5 50 597-651 72-121 (180)
15 2b8k_G B16, DNA-directed RNA p 96.4 0.00072 2.5E-08 67.1 1.2 49 597-651 74-122 (215)
16 1y14_B B16, RPB7, DNA-directed 96.4 0.00083 2.8E-08 64.3 1.6 51 595-651 72-122 (171)
17 3bzc_A TEX; helix-turn-helix, 96.4 0.0017 5.8E-08 75.8 4.1 39 604-646 652-690 (785)
18 2eqs_A ATP-dependent RNA helic 96.1 0.0021 7.2E-08 56.3 2.4 43 602-646 8-51 (103)
19 1go3_E DNA-directed RNA polyme 95.7 0.0055 1.9E-07 59.2 3.6 47 600-651 75-121 (187)
20 2cqo_A Nucleolar protein of 40 95.7 0.0036 1.2E-07 56.3 2.1 43 603-648 19-61 (119)
21 2k52_A Uncharacterized protein 95.5 0.0034 1.2E-07 52.2 0.9 42 602-647 1-42 (80)
22 2k4k_A GSP13, general stress p 95.1 0.0065 2.2E-07 55.4 1.8 40 605-648 6-45 (130)
23 1e3p_A Guanosine pentaphosphat 94.7 0.0025 8.7E-08 74.1 -2.7 43 602-648 663-709 (757)
24 2khj_A 30S ribosomal protein S 94.5 0.018 6.1E-07 50.7 2.9 52 593-648 18-69 (109)
25 2khi_A 30S ribosomal protein S 94.2 0.025 8.7E-07 50.2 3.1 39 603-645 27-65 (115)
26 4aid_A Polyribonucleotide nucl 92.9 0.024 8.3E-07 65.4 1.0 44 602-649 633-676 (726)
27 2bh8_A 1B11; transcription, mo 91.2 0.077 2.6E-06 46.1 1.9 38 605-646 60-97 (101)
28 3cdi_A Polynucleotide phosphor 89.8 0.061 2.1E-06 62.3 0.0 46 599-648 620-665 (723)
29 1wi5_A RRP5 protein homolog; S 89.1 0.058 2E-06 48.1 -0.7 43 605-651 20-62 (119)
30 3psf_A Transcription elongatio 88.4 0.078 2.7E-06 63.5 -0.4 44 601-648 899-943 (1030)
31 3psi_A Transcription elongatio 88.3 0.18 6.1E-06 61.5 2.5 40 605-648 901-940 (1219)
32 3k2z_A LEXA repressor; winged 80.7 4.9 0.00017 38.3 8.5 67 161-272 112-180 (196)
33 2yty_A Cold shock domain-conta 75.2 4.7 0.00016 33.9 5.6 51 132-185 15-69 (88)
34 1wfq_A UNR protein; beta-barre 74.9 5.8 0.0002 33.5 6.1 52 131-185 14-69 (89)
35 2id0_A Exoribonuclease 2; RNAs 73.2 4.5 0.00015 46.2 6.7 60 241-308 22-82 (644)
36 3go5_A Multidomain protein wit 69.0 2.2 7.5E-05 43.8 2.6 46 133-184 7-52 (285)
37 3m7n_A Putative uncharacterize 66.4 2 6.9E-05 40.9 1.6 39 607-647 58-104 (179)
38 2ytv_A Cold shock domain-conta 66.3 6.3 0.00021 32.4 4.4 49 134-185 7-59 (79)
39 2ytx_A Cold shock domain-conta 60.1 16 0.00054 31.2 5.9 49 133-184 16-68 (97)
40 2nn6_I 3'-5' exoribonuclease C 59.6 3.6 0.00012 40.2 2.0 41 604-646 79-125 (209)
41 3i2z_B RNA chaperone, negative 59.4 21 0.00073 28.5 6.3 48 135-185 5-59 (71)
42 3ix7_A Uncharacterized protein 59.0 13 0.00045 33.7 5.5 45 37-92 86-130 (134)
43 3cam_A Cold-shock domain famil 58.6 20 0.00069 28.3 5.9 46 137-185 3-55 (67)
44 3aqq_A Calcium-regulated heat 58.6 14 0.00047 34.2 5.6 53 129-184 56-113 (147)
45 2vnu_D Exosome complex exonucl 53.3 14 0.00049 42.9 5.9 32 256-288 47-80 (760)
46 1h95_A CSD, Y-box binding prot 52.8 17 0.00059 29.7 4.8 48 135-185 8-66 (79)
47 3go5_A Multidomain protein wit 52.5 8.4 0.00029 39.4 3.4 38 605-645 68-106 (285)
48 1x65_A UNR protein; cell-free 51.2 17 0.00058 30.6 4.5 49 134-185 7-58 (89)
49 2je6_I RRP4, exosome complex R 40.8 9.7 0.00033 38.2 1.7 40 604-647 72-111 (251)
50 2wp8_J Exosome complex exonucl 40.7 30 0.001 41.3 6.1 32 256-288 264-297 (977)
51 3l0o_A Transcription terminati 40.4 22 0.00075 38.3 4.4 52 134-187 56-113 (427)
52 1umu_A UMUD'; induced mutagene 40.4 79 0.0027 27.0 7.4 40 227-272 58-97 (116)
53 2ba0_A Archeal exosome RNA bin 36.5 23 0.0008 34.9 3.7 38 604-645 55-92 (229)
54 3a0j_A Cold shock protein; OB- 35.7 36 0.0012 27.2 4.1 45 137-185 3-54 (73)
55 2kcm_A Cold shock domain famil 35.7 33 0.0011 27.7 3.8 45 137-185 2-54 (74)
56 1c9o_A CSPB, cold-shock protei 35.6 52 0.0018 25.7 4.9 45 137-185 3-54 (66)
57 2k5n_A Putative cold-shock pro 34.7 62 0.0021 26.0 5.3 46 136-185 3-53 (74)
58 2hnf_A Repressor protein CI101 33.6 97 0.0033 27.2 7.0 41 227-271 80-120 (133)
59 2z0s_A Probable exosome comple 32.9 15 0.00051 36.3 1.6 38 604-645 64-101 (235)
60 2bh8_A 1B11; transcription, mo 32.6 83 0.0028 26.6 6.1 52 132-185 13-72 (101)
61 1g6p_A Cold shock protein TMCS 29.9 83 0.0028 24.5 5.2 45 137-185 2-53 (66)
62 2lss_A Cold shock-like protein 35.5 11 0.00039 30.0 0.0 46 136-184 5-57 (70)
63 1v96_A Hypothetical protein PH 29.2 68 0.0023 28.3 5.3 30 62-91 111-140 (149)
64 3ulj_A LIN28B, DNA-binding pro 24.9 57 0.002 27.4 3.6 47 136-185 9-69 (90)
65 2khj_A 30S ribosomal protein S 24.2 1.9E+02 0.0066 24.4 7.1 62 122-186 21-90 (109)
66 1yvc_A MRR5; structure, autost 24.1 1.3E+02 0.0044 23.6 5.4 46 130-185 13-59 (70)
67 3ts2_A Protein LIN-28 homolog 24.1 56 0.0019 29.9 3.7 47 136-185 10-70 (148)
68 3bdn_A Lambda repressor; repre 22.4 2E+02 0.0068 27.2 7.6 41 227-271 176-216 (236)
69 1pcq_O Groes protein; chaperon 22.4 1.1E+02 0.0036 26.1 4.8 40 174-235 6-45 (97)
70 1kca_A Repressor protein CI; g 22.1 2.3E+02 0.0079 23.8 7.1 18 254-271 72-89 (109)
71 1o4w_A PIN (PILT N-terminus) d 20.7 70 0.0024 28.6 3.6 38 38-86 100-137 (147)
72 1p3h_A 10 kDa chaperonin; beta 20.3 1E+02 0.0035 26.3 4.3 42 172-235 6-47 (99)
No 1
>2wp8_J Exosome complex exonuclease DIS3; nucleus, hydrolase, RNA-binding, exonucle binding, mitochondrion, rRNA processing; 3.00A {Saccharomyces cerevisiae}
Probab=100.00 E-value=8.6e-123 Score=1096.92 Aligned_cols=597 Identities=35% Similarity=0.597 Sum_probs=482.9
Q ss_pred CcccccCCC--CcEEEEecCccccccccCCCCCCccchhhHHHHHHHHHhHhhhhhhcc-CCeEEEEeCChhhHHHHhh-
Q psy4856 1 LKDLISNPS--RKFYVFVNEHHYETYVEQEPGESVNDRNDRALRRVATWYVKYEEHLES-AVRVILLSEDVRNRDLATQ- 76 (654)
Q Consensus 1 lr~l~~~~~--~~~~vF~Ne~~~~t~v~~~~~es~~drn~r~i~~aa~wY~~~~~Hl~~-~~~vvllt~d~~~~~~a~~- 76 (654)
||+||+|++ |+||||+||||++|||+|++|||+|||||||||+||+|| ++||+. .++|||||||++|+++|++
T Consensus 108 l~~l~~~~~~~~~~~vF~ne~~~~t~~~~~~~es~~~r~~r~i~~~~~wy---~~hl~~~~~~vv~~t~d~~~~~~~~~~ 184 (977)
T 2wp8_J 108 LRTLCRDSDDHKRFIVFHNEFSEHTFVERLPNETINDRNDRAIRKTCQWY---SEHLKPYDINVVLVTNDRLNREAATKE 184 (977)
T ss_dssp HHHHHHTCCSSCEEEEECTTTBTTTCCC-------CCHHHHHHHHHHHHH---HHHHGGGTCEEEEEECC----------
T ss_pred HHHHhcCcCcCceEEEEccccchhhcccCccCCChhhhhHHHHHHHHHHH---HHhccccCCCEEEEeCCHHHHHHHhhh
Confidence 689999999 999999999999999999999999999999999999999 999985 6899999999999999999
Q ss_pred --cCcceeeHHHHHhhCCCCchhhhhhcccch-h---hccccCCCCCCCCCCHHHHHHhhhcCCeEEEEEEEecCCCcee
Q psy4856 77 --SGLLTSSIEGYISTLSNGEPLLDKLSKKEA-V---VETSVKDSLYPLHATPSEIHAGIKNQSLLQGSFQASRENFLEG 150 (654)
Q Consensus 77 --~gi~~~s~~~yv~~~~~~~~l~d~l~~~~~-~---~~~~~~~~~y~ehl~~~~l~~gik~g~l~~G~l~v~~~n~~eg 150 (654)
+|+.++|+.|||++++++++|+|+|+.... + ++.++++.+|+||||+++|.+||++|++++|+|++|++||.||
T Consensus 185 ~~~~~~~~s~~~y~~~~~~~~~l~d~~~~~~~~~~~~~~~~~~~~~f~~yl~~~~l~~~l~~g~l~~G~l~v~~~~~~eg 264 (977)
T 2wp8_J 185 VESNIITKSLVQYIELLPNADDIRDSIPQMDSFDKDLERDTFSDFTFPEYYSTARVMGGLKNGVLYQGNIQISEYNFLEG 264 (977)
T ss_dssp -CCCSCEEEHHHHHHTSTTTTCCCCC------------------CCCCCCCCHHHHHHHHHTTSSEEEEEEECSSBTTEE
T ss_pred ccCCcEEEEHHHHHHhccCcHHHHHHHhhhccccccccccccccCcCcCcCCHHHHHHHHHcCCEEEEEEEEccCCCccE
Confidence 999999999999999999999999976541 1 2223557899999999999999999999999999999999999
Q ss_pred EEeecCCCcCeEecCCCCCCcCCCCCEEEEEEccCCCcCCccccccccCCCCCCcccc------------c---------
Q psy4856 151 QVNCEGYDKPILVQGREGLNRAIDGDTVAVRLLPESQWSAPLELVLEDEGSGEDEEGE------------D--------- 209 (654)
Q Consensus 151 fV~~~~~~~dI~I~g~~~~NRAl~GD~V~Vellp~~~w~~~~~~~~~~~~~~~~~~~~------------~--------- 209 (654)
||.+++.++||||+|+.+||||||||+|+|+|+++++|..+++.+.+++...+++..+ +
T Consensus 265 fV~~~~~~~DI~I~~~~~~n~A~~GD~V~V~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 344 (977)
T 2wp8_J 265 SVSLPRFSKPVLIVGQKNLNRAFNGDQVIVELLPQSEWKAPSSIVLDSEHFDVNDNPDIEAGDDDDNNESSSNTTVISDK 344 (977)
T ss_dssp EECCTTCSSCEEEESHHHHTTCCTTCEEEEEECCGGGCBCCCSCCBCGGGSSTTCCCCCC------------CCCCCCHH
T ss_pred EEEcCCCCCCEEEcChHHhhhCcCCCEEEEEEeccccccccccccccccccccccccccccccccccccccccccccchh
Confidence 9999987889999996699999999999999999999987765444333221111000 0
Q ss_pred c-ccccCCCC--CCCCCCCCceeEEEEEeecCceeeeeecCCCCC----CCceEEEEeCCCCCCcEEEccccccccCCCE
Q psy4856 210 G-KLIKGNKT--VPPAERRPTGQIVGIIKRKWRQYCGILQPNPLA----GSSRHLFVPAERKIPKIRVETRQIATLSGQR 282 (654)
Q Consensus 210 ~-~~l~~~~~--~~~~~~~ptGkVVgIi~R~~r~~vG~l~~~~~~----~~~~~l~vP~D~riP~I~I~t~q~~~l~~~r 282 (654)
+ .++.++.. ....+++|+|+||+|++|+|++|||+|.+.... ..++++|+|.|+|||+|+|++++...+.|++
T Consensus 345 ~~~~~~~~~~~~~~~~~~~~eG~Vv~IleR~~~~~vG~l~~~~~~~~g~~~~~~~~~P~D~ri~~i~I~~~~~~~~~g~~ 424 (977)
T 2wp8_J 345 QRRLLAKDAMIAQRSKKIQPTAKVVYIQRRSWRQYVGQLAPSSVDPQSSSTQNVFVILMDKCLPKVRIRTRRAAELLDKR 424 (977)
T ss_dssp HHHHHHHHHHHHHHCSCCBCBEEEEEEEECCCCEEEEEECGGGCCTTCCSCEEEEEEESSTTSCCEEEEETTTTGGGGEE
T ss_pred hhhhhhhhhhhccccCCCCceEEEEEEEEECCCeEEEEEEEecCcccCCccceEEEEECCCCCccEEeccccccccCCCE
Confidence 0 00000000 001345699999999999999999999875321 1345799999999999999999988899999
Q ss_pred EEEEEeecCCCCCCccEEEEEecCCCCChhhHHHHHhhcCCCCCCCCcHHHHhcCCCC--CCCCC-------------C-
Q psy4856 283 IVVAIDSWPRHSRYPQGHFVRALGPIGDKDTENEVLLLEHDVPHSKFSDLVLSYLPPM--PWEKS-------------T- 346 (654)
Q Consensus 283 vvV~Id~Wp~~s~~P~Ghiv~~LG~~gd~~~E~~~iL~e~~i~~~~Fs~~vl~~l~~~--~~~i~-------------~- 346 (654)
|+|+|++||..+.+|.|||+++||..||+++|++++|.+|+||+.+||++|++||+.. +|.++ +
T Consensus 425 vvv~I~~wp~~~~~p~G~iv~~LG~~~d~~~e~~~il~~~~l~~~~Fp~~vl~~~~~~~~~~~i~~~~~~~~~v~~~~~~ 504 (977)
T 2wp8_J 425 IVISIDSWPTTHKYPLGHFVRDLGTIESAQAETEALLLEHDVEYRPFSKKVLECLPAEGHDWKAPTKLDDPEAVSKDPLL 504 (977)
T ss_dssp EEEEEEECCTTCSSCEEEEEEEEEESSCSHHHHHHHHHHTTCCCSCCCHHHHTTSCTTGGGCCCCSSTTCHHHHHHCGGG
T ss_pred EEEEEeeccCCCCCccEEEEEEeCCCCCcchhHHHHHHHcCCCcccCCHHHHHHHHhccccccccccccccccccccccc
Confidence 9999999999999999999999999999999999999999999988999999999998 88865 2
Q ss_pred -CC------ceeeeCCCCce---------eccCCeEEEEEEe-ccCCccCCCc----------eeeec-c-----CCcch
Q psy4856 347 -GR------PWCSGTSIGLS---------QISTGVISVGLEQ-GFPSLLKPRT----------TFVFY-D-----FPRTT 393 (654)
Q Consensus 347 -~R------~~~tIDp~~~~---------~l~~g~~~lgVHI-DVs~~V~~~s----------tsvYL-d-----LP~~L 393 (654)
+| ++|||||++|+ ++++|+|+||||| ||||||+||| ||||| + ||+.|
T Consensus 505 ~~R~Dlr~l~~~TID~~~akDlDDAvsie~~~~G~~~lgVHIADVs~yV~~gS~LD~eA~~RgtSvYLpdrviPMLP~~L 584 (977)
T 2wp8_J 505 TKRKDLRDKLICSIDPPGCVDINDALHAKKLPNGNWEVGVHIADVTHFVKPGTALDAEGAARGTSVYLVDKRIDMLPMLL 584 (977)
T ss_dssp GGCEECTTSCCEEEECTTCSCCCEEEEEEECTTSCEEEEEEEECHHHHSCSSSHHHHHHHHHCBCEEETTEEECSSCHHH
T ss_pred ccceecccCcEEEECCCCCCcccceEEEEEcCCCcEEEEEEeccHHHeeCCCCHHHHHHHHcCCcEeCCCceEeCCChHH
Confidence 45 99999999998 3578999999999 9999999999 99999 7 99999
Q ss_pred hhhHHHH------Hhh---------------------------------h------------------------------
Q psy4856 394 RTNFILL------FLF---------------------------------Q------------------------------ 404 (654)
Q Consensus 394 s~~lcSL------la~---------------------------------q------------------------------ 404 (654)
|+++||| +|| |
T Consensus 585 S~~lcSL~pg~dRla~Sv~~~id~~G~i~~~~~~~svIrs~~rltY~~v~~~l~~~~~~~~l~~~L~~L~~la~~Lr~~R 664 (977)
T 2wp8_J 585 GTDLCSLKPYVDRFAFSVIWELDDSANIVNVNFMKSVIRSREAFSYEQAQLRIDDKTQNDELTMGMRALLKLSVKLKQKR 664 (977)
T ss_dssp HTTTSSCCBTSEEEEEEEEEEECTTSCEEEEEEEEEEEEBSEEEEHHHHHHHHHCTTCCCHHHHHHHHHHHHHHHHHHHH
T ss_pred hccccccCCCCceEEEEEEEEECCCCCEEEEEEEEEEEEecceEcHHHHHHHHhCCCcchHHHHHHHHHHHHHHHHHHHH
Confidence 9999999 454 0
Q ss_pred ----hhcccccCCC---------ccc------------------HHHHHHHHHHHhc--CCceeeeCCChH------HHH
Q psy4856 405 ----AVYFSSGMLQ---------QSD------------------FHHYGLATPIYTH--FTSPIRRYADII------VHR 445 (654)
Q Consensus 405 ----al~l~~pe~~---------~~d------------------~AN~~vA~~~~~~--~p~l~R~h~~p~------l~~ 445 (654)
||+|++||.+ +.+ +||++||+|+.++ .|++||+|+.|+ |.+
T Consensus 665 ~~~Gai~~~~pE~~~~ld~e~g~~~~i~~~~~~~a~~LIEE~MllAN~~vA~~l~~~~~~~~lyR~h~~P~~~kl~~l~~ 744 (977)
T 2wp8_J 665 LEAGALNLASPEVKVHMDSETSDPNEVEIKKLLATNSLVEEFMLLANISVARKIYDAFPQTAMLRRHAAPPSTNFEILNE 744 (977)
T ss_dssp HTTTCCCCCSHHHHTTSCCTTCCCCCSSCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCTTTCEEEEBCCCCGGGGHHHHH
T ss_pred HhCCCcccCCCceEEEeccCCCceEEEEecCCCcHHHHHHHHHHHHHHHHHHHHHHhCCCCeEEEeCCCCCHHHHHHHHH
Confidence 7888888711 111 4999999999985 688999999885 444
Q ss_pred HHHHhhcC---------------------CCchhHHHHHH--hhcc----cccc--cCCccccccCCCCCcccccCcccc
Q psy4856 446 LLAACIGA---------------------DATYPSLLDKK--ASTA----LCYN--LVSDFHHYGLATPIYTHFTSPIRR 496 (654)
Q Consensus 446 ~l~~~~g~---------------------~~~~~~llr~l--~~m~----~~s~--s~~~~~H~gLa~~~YTHfTSPIRR 496 (654)
+++...|+ ++.++.+++.| ++|+ +++| ++++.+|||||++.||||||||||
T Consensus 745 ~~~~~~G~~l~~~~~~~l~~~L~~~~~~~~~~~~~ll~~~~lrsm~~A~Y~~sg~~s~~~~gHfgLa~~~YtHfTSPIRR 824 (977)
T 2wp8_J 745 MLNTRKNMSISLESSKALADSLDRCVDPEDPYFNTLVRIMSTRCMMAAQYFYSGAYSYPDFRHYGLAVDIYTHFTSPIRR 824 (977)
T ss_dssp HHHHHHSCCCCCSSHHHHHHHHHHCCCSSCTTHHHHHHHHHHTTSCCCEEEEGGGSCGGGSCBTTTTBSSCCCCSCTTTB
T ss_pred HHHHccCCCCCCCCHHHHHHHHHHhhCCchHHHHHHHHHHHHHhccCceeecccccCCCCCCceecCCCCeeccCchHhh
Confidence 45443254 13445566543 3465 3444 678999999999999999999999
Q ss_pred chhHHHHHHHHHHHhCCCCCCCccCHHHHHHHHhcCCCCCCcCcccccCCCCCCCcccccCCccCccchhhHHHHHHHHh
Q psy4856 497 YADIIVHRLLAACIGADATYPSLLDKKASTALCYNLPGCTDIDDALHCRPLPNGNIEVTYPSLGMSQSCKDIQACLLELG 576 (654)
Q Consensus 497 Y~DLivHR~L~a~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 576 (654)
|+||+|||||+++|++++.+....+++.++.+|.
T Consensus 825 Y~DLivHR~L~a~L~~~~~~~~~~~~~~l~~i~~---------------------------------------------- 858 (977)
T 2wp8_J 825 YCDVVAHRQLAGAIGYEPLSLTHRDKNKMDMICR---------------------------------------------- 858 (977)
T ss_dssp HHHHHHHHHHHHHTTSSCCCGGGGCHHHHHHHHH----------------------------------------------
T ss_pred HHHHHHHHHHHHHhcCCCCcccccCHHHHHHHHH----------------------------------------------
Confidence 9999999999999987765544456666766666
Q ss_pred HHhhHHHHHHHHHHHHHHHHHHHHHhhcccCcccceEEEcccccceEEEECCCCcccccceeeeccCC--CccEEec
Q psy4856 577 YNLNYRNRQAQYAGRASVALHTHLFFRRKSITEEEVARRTDLRHLDVCSVDPPGCTDIDDALHCRPLP--NGNIEVT 651 (654)
Q Consensus 577 ~~ln~r~r~A~~aer~~~~l~~~~~l~~~~g~~~~~~~i~~~~~~g~~~v~~~~~~~~eg~vh~~~~~--~~~~~~~ 651 (654)
|||.++|+|++|||++.++|++.||+++ |+++. |+|+++.++|+| |+.+.+. +||+||+|.|+ ++||+|+
T Consensus 859 -~~s~~er~A~~aeR~~~~~~~~~~l~~~-ge~~~-g~V~~V~~~G~f-V~L~~~g-iEGlVhis~L~~~~d~y~fd 930 (977)
T 2wp8_J 859 -NINRKHRNAQFAGRASIEYYVGQVMRNN-ESTET-GYVIKVFNNGIV-VLVPKFG-VEGLIRLDNLTEDPNSAAFD 930 (977)
T ss_dssp -HHHHHHHHHHHHHHHHHHHHHHHHHHHT-TCEEE-EEEEEECSSEEE-EECTTTC-CEEEEEGGGTCSCGGGCEEE
T ss_pred -HhCHHHHHHHHHHHHHHHHHHhhhhccc-ceEEE-EEEEEEcCCeEE-EEEcCCC-eEEEEEeccccCCCceeEEc
Confidence 9999999999999999999999999999 99999 999999999999 7777654 89999999998 9999986
No 2
>2vnu_D Exosome complex exonuclease RRP44; hydrolase-RNA complex, RNA degradation, RNA-binding, RNA Pro; HET: 1PE; 2.30A {Saccharomyces cerevisiae} SCOP: b.40.4.5 b.40.4.5 b.40.4.5 b.40.4.16
Probab=100.00 E-value=2.2e-96 Score=857.53 Aligned_cols=489 Identities=34% Similarity=0.582 Sum_probs=400.7
Q ss_pred cCCCCCCCCCCHHHHHHhhhcCCeEEEEEEEecCCCceeEEeecCCCcCeEecCCCCCCcCCCCCEEEEEEccCCCcCCc
Q psy4856 112 VKDSLYPLHATPSEIHAGIKNQSLLQGSFQASRENFLEGQVNCEGYDKPILVQGREGLNRAIDGDTVAVRLLPESQWSAP 191 (654)
Q Consensus 112 ~~~~~y~ehl~~~~l~~gik~g~l~~G~l~v~~~n~~egfV~~~~~~~dI~I~g~~~~NRAl~GD~V~Vellp~~~w~~~ 191 (654)
+++.+|++|||+++|.+||++|++++|+|++|++||.+|||.+++.++||||+|+.+||||||||+|+|+|+++++|..+
T Consensus 9 ~~~~~f~~yl~~~~l~~~~~~g~l~~G~l~~~~~~~~~gfv~~~~~~~di~I~~~~~~n~A~~GD~V~V~i~~~~~~~~~ 88 (760)
T 2vnu_D 9 FSDFTFPEYYSTARVMGGLKNGVLYQGNIQISEYNFLEGSVSLPRFSKPVLIVGQKNLNRAFNGDQVIVELLPQSEWKAP 88 (760)
T ss_dssp --CCCCCCCCCHHHHHHHHHHTSEEEEEEEECSSBTTEEEECCSSSSSCEEEESHHHHTTCCTTCEEEEEECCGGGCBCC
T ss_pred cCCCcCcccCCHHHHHHHHHcCCEEEEEEEEecCCCccEEEEcCCCCCCEEEcChhhhccccCCCEEEEEEecccccccc
Confidence 45779999999999999999999999999999999999999999878899999966999999999999999999999877
Q ss_pred cccccccCCCCCCcc------------c--------cc-c-ccccCCCCCC--CCCCCCceeEEEEEeecCceeeeeecC
Q psy4856 192 LELVLEDEGSGEDEE------------G--------ED-G-KLIKGNKTVP--PAERRPTGQIVGIIKRKWRQYCGILQP 247 (654)
Q Consensus 192 ~~~~~~~~~~~~~~~------------~--------~~-~-~~l~~~~~~~--~~~~~ptGkVVgIi~R~~r~~vG~l~~ 247 (654)
++.+.+++...+++. + ++ + .++.++.... ..+++|+|+||+|++|+|++|||+|.+
T Consensus 89 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~eG~Vv~IleR~~~~~vG~l~~ 168 (760)
T 2vnu_D 89 SSIVLDSEHFDVNDNPDIEAGDDDDNNESSSNTTVISDKQRRLLAKDAMIAQRSKKIQPTAKVVYIQRRSWRQYVGQLAP 168 (760)
T ss_dssp CSSCBCTTTCC---------------------------------------------CBCBEEEEEEEECCCCEEEEEECG
T ss_pred cccccccccccccccccccccccccccccccccccccchhhhhhhhhhhhccccCCCCceEEEEEEEEECCceEEEEEEE
Confidence 654433332211100 0 00 0 1111111111 133579999999999999999999986
Q ss_pred CCCC----CCceEEEEeCCCCCCcEEEccccccccCCCEEEEEEeecCCCCCCccEEEEEecCCCCChhhHHHHHhhcCC
Q psy4856 248 NPLA----GSSRHLFVPAERKIPKIRVETRQIATLSGQRIVVAIDSWPRHSRYPQGHFVRALGPIGDKDTENEVLLLEHD 323 (654)
Q Consensus 248 ~~~~----~~~~~l~vP~D~riP~I~I~t~q~~~l~~~rvvV~Id~Wp~~s~~P~Ghiv~~LG~~gd~~~E~~~iL~e~~ 323 (654)
.+.. ..++++|+|.|+|||+|+|++++...+.|++|+|+|++||..+.+|.|||+++||..||+++|++++|.+|+
T Consensus 169 ~~~~~~~~~~~~~~~~P~d~ri~~i~i~~~~~~~~~g~~vvv~i~~~p~~~~~p~G~i~~~LG~~~d~~~e~~~il~~~~ 248 (760)
T 2vnu_D 169 SSVDPQSSSTQNVFVILMDKCLPKVRIRTRRAAELLDKRIVISIDSWPTTHKYPLGHFVRDLGTIESAQAETEALLLEHD 248 (760)
T ss_dssp GGCCTTCCSCEEEEEEESSTTSCCEEEEETTGGGGTTEEEEEEEEECCTTCSSCEEEEEEEEEESSCSHHHHHHHHHHTT
T ss_pred ccCccccCccceEEEEECCCCCccEEEecccccccCCCEEEEEEeeccCCCCCCcEEEEEEeCCCCCchhHHHHHHHHCC
Confidence 5321 124689999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCcHHHHhcCCCC--CCCCC-------------C--CC------ceeeeCCCCce---------eccCCeEEEEEE
Q psy4856 324 VPHSKFSDLVLSYLPPM--PWEKS-------------T--GR------PWCSGTSIGLS---------QISTGVISVGLE 371 (654)
Q Consensus 324 i~~~~Fs~~vl~~l~~~--~~~i~-------------~--~R------~~~tIDp~~~~---------~l~~g~~~lgVH 371 (654)
||+.+||++|++||+.. +|.++ + +| ++|||||++|+ ++++|+|+||||
T Consensus 249 l~~~~F~~~vl~~~~~~~~~~~i~~~~~~~~~v~~~~~~~~R~Dlr~l~~~TID~~~a~D~DDAvsie~~~~g~~~l~VH 328 (760)
T 2vnu_D 249 VEYRPFSKKVLECLPAEGHDWKAPTKLDDPEAVSKDPLLTKRKDLRDKLICSIDPPGCVDINDALHAKKLPNGNWEVGVH 328 (760)
T ss_dssp CCCSCCCHHHHTTSCTTGGGCCCCSSTTCHHHHHHCGGGGGSEECTTSCCEEEESSSCCCCCEEEEEEECTTSCEEEEEE
T ss_pred CCCcCCCHHHHHHHHhcccccccccccccccccccccchhcccccccCeEEEEcCCCCCcccceEEEEEcCCCcEEEEEE
Confidence 99977999999999998 88765 3 45 99999999998 357899999999
Q ss_pred e-ccCCccCCCc----------eeeec-c-----CCcchhhhHHHH------Hhh-------------------------
Q psy4856 372 Q-GFPSLLKPRT----------TFVFY-D-----FPRTTRTNFILL------FLF------------------------- 403 (654)
Q Consensus 372 I-DVs~~V~~~s----------tsvYL-d-----LP~~Ls~~lcSL------la~------------------------- 403 (654)
| ||||||+||| ||||| + ||+.||+++||| +||
T Consensus 329 IADVs~yV~~gs~LD~eA~~RgtSvYlp~rviPMLP~~Ls~~lcSL~p~~dRla~S~~~~id~~G~v~~~~~~~svI~s~ 408 (760)
T 2vnu_D 329 IADVTHFVKPGTALDAEGAARGTSVYLVDKRIDMLPMLLGTDLCSLKPYVDRFAFSVIWELDDSANIVNVNFMKSVIRSR 408 (760)
T ss_dssp EECHHHHSCTTSHHHHHHHHHCBCEECSSCEECSSCHHHHTTTSSCCBTSEEEEEEEEEEECTTCCEEEEEEEEEEEEBS
T ss_pred eccHHHeeCCCCHHHHHHHHcCCcEecCCceEeCCChHHcccccccCCCCcEEEEEEEEEEcCCCCEEEEEEEEEEEEec
Confidence 9 9999999999 99999 7 999999999999 454
Q ss_pred --------h----------------------------------hhcccccCCC---------ccc---------------
Q psy4856 404 --------Q----------------------------------AVYFSSGMLQ---------QSD--------------- 417 (654)
Q Consensus 404 --------q----------------------------------al~l~~pe~~---------~~d--------------- 417 (654)
| ||+|++||.+ +.+
T Consensus 409 ~rltY~~v~~~l~~~~~~~~l~~~L~~L~~la~~lr~~R~~~Gai~~~~pe~~~~ld~e~g~~~~i~~~~~~~a~~lIeE 488 (760)
T 2vnu_D 409 EAFSYEQAQLRIDDKTQNDELTMGMRALLKLSVKLKQKRLEAGALNLASPEVKVHMDSETSDPNEVEIKKLLATNSLVEE 488 (760)
T ss_dssp EEEEHHHHHHHHHCTTCCCHHHHHHHHHHHHHHHHHHHHHHTTCCCCCCCCEEEEECSSSSCEEEEEECCCCHHHHHHHH
T ss_pred ceEcHHHHHHHHhCCCcchHHHHHHHHHHHHHHHHHHHHHhCCCcccCCCceEEEEecCCCcEEEEEEcCCccHHHHHHH
Confidence 0 7999998821 111
Q ss_pred ---HHHHHHHHHHHhc--CCceeeeCCChH------HHHHHHHhhcCC---------------------CchhHHHHHH-
Q psy4856 418 ---FHHYGLATPIYTH--FTSPIRRYADII------VHRLLAACIGAD---------------------ATYPSLLDKK- 464 (654)
Q Consensus 418 ---~AN~~vA~~~~~~--~p~l~R~h~~p~------l~~~l~~~~g~~---------------------~~~~~llr~l- 464 (654)
+||++||+|+.++ .|++||+|+.|+ |.++++...|+. +.++.+++.|
T Consensus 489 ~MllAN~~vA~~l~~~~~~~~l~R~h~~P~~~~l~~l~~~~~~~~g~~l~~~~~~~l~~~l~~~~~~~~~~~~~ll~~~~ 568 (760)
T 2vnu_D 489 FMLLANISVARKIYDAFPQTAMLRRHAAPPSTNFEILNEMLNTRKNMSISLESSKALADSLDRCVDPEDPYFNTLVRIMS 568 (760)
T ss_dssp HHHHHHHHHHHHHHHHCTTTCEEEEBCCCCGGGGHHHHHHHHHHHSCCCCCSCHHHHHHHHHTCCBTTBTTHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhCCCCeeEEecCCCCHHHHHHHHHHHHHccCCCcCCCCHHHHHHHHHHhhCCchHHHHHHHHHHH
Confidence 4999999999986 678999999886 444454432542 2344555533
Q ss_pred -hhcc----cccc--cCCccccccCCCCCcccccCccccchhHHHHHHHHHHHhCCCCCCCccCHHHHHHHHhcCCCCCC
Q psy4856 465 -ASTA----LCYN--LVSDFHHYGLATPIYTHFTSPIRRYADIIVHRLLAACIGADATYPSLLDKKASTALCYNLPGCTD 537 (654)
Q Consensus 465 -~~m~----~~s~--s~~~~~H~gLa~~~YTHfTSPIRRY~DLivHR~L~a~l~~~~~~~~~~~~~~l~~~~~~~~~~~~ 537 (654)
++|+ +++| ++++.+|||||++.|||||||||||+||+|||||+++|++++.+....+.+.+..+|.
T Consensus 569 ~r~m~~A~Y~~~g~~~~~~~~HfgLa~~~YtHfTSPIRRY~DLivHR~L~~~l~~~~~~~~~~~~~~l~~~~~------- 641 (760)
T 2vnu_D 569 TRCMMAAQYFYSGAYSYPDFRHYGLAVDIYTHFTSPIRRYCDVVAHRQLAGAIGYEPLSLTHRDKNKMDMICR------- 641 (760)
T ss_dssp HTTSCCCEEEEGGGSCGGGGCBTTTTBSCCCCCSCTTTBHHHHHHHHHHHHHTTSSCCCGGGGCHHHHHHHHH-------
T ss_pred HHhhhCccccccCcCCCCCCCceecCCCceeccCchHhhhHHHHHHHHHHHHHccCCCcccccCHHHHHHHHH-------
Confidence 4465 3334 5789999999999999999999999999999999999987665444445566666666
Q ss_pred cCcccccCCCCCCCcccccCCccCccchhhHHHHHHHHhHHhhHHHHHHHHHHHHHHHHHHHHHhhcccCcccceEEEcc
Q psy4856 538 IDDALHCRPLPNGNIEVTYPSLGMSQSCKDIQACLLELGYNLNYRNRQAQYAGRASVALHTHLFFRRKSITEEEVARRTD 617 (654)
Q Consensus 538 ~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ln~r~r~A~~aer~~~~l~~~~~l~~~~g~~~~~~~i~~ 617 (654)
|||.++|+|++|+|++.++|++.||+++. +++. |+|++
T Consensus 642 ----------------------------------------~~s~~er~A~~aer~~~~~~~~~~l~~~~-~~~~-g~V~~ 679 (760)
T 2vnu_D 642 ----------------------------------------NINRKHRNAQFAGRASIEYYVGQVMRNNE-STET-GYVIK 679 (760)
T ss_dssp ----------------------------------------HHHHHHHHHHHHHHHHHHHHHHHHHHTCC-SEEE-EEEEE
T ss_pred ----------------------------------------HhhHHHHHHHHHHHHHHHHHHHHHhhcCc-eEEE-EEEEE
Confidence 99999999999999999999999999998 8998 99999
Q ss_pred cccceEEEECCCCcccccceeeeccCC--CccEEec
Q psy4856 618 LRHLDVCSVDPPGCTDIDDALHCRPLP--NGNIEVT 651 (654)
Q Consensus 618 ~~~~g~~~v~~~~~~~~eg~vh~~~~~--~~~~~~~ 651 (654)
++++|+| |+.+.+. +||+||+|.|+ ++||+|+
T Consensus 680 V~~~G~f-V~l~~~g-iEGlVhis~L~~~~d~~~fd 713 (760)
T 2vnu_D 680 VFNNGIV-VLVPKFG-VEGLIRLDNLTEDPNSAAFD 713 (760)
T ss_dssp EETTEEE-EEETTTT-EEEEEEHHHHCSCGGGCEEE
T ss_pred EECCeEE-EEEeCCC-cEEEEEeccccCCCceeEEc
Confidence 9999999 7666544 89999999997 9999986
No 3
>2id0_A Exoribonuclease 2; RNAse, exonuclease, hydrolyase, mRNA decay, RNR family, hydrolase; 2.35A {Escherichia coli} SCOP: b.40.4.5 b.40.4.5 b.40.4.5 b.40.4.16 PDB: 2ix0_A* 2ix1_A
Probab=100.00 E-value=1.4e-80 Score=713.47 Aligned_cols=421 Identities=16% Similarity=0.188 Sum_probs=351.8
Q ss_pred HHHHHHhhhcC-CeEEEEEEEecCCCceeEEeecCCCcCeEecCCCCCCcCCCCCEEEEEEccCCCcCCccccccccCCC
Q psy4856 123 PSEIHAGIKNQ-SLLQGSFQASRENFLEGQVNCEGYDKPILVQGREGLNRAIDGDTVAVRLLPESQWSAPLELVLEDEGS 201 (654)
Q Consensus 123 ~~~l~~gik~g-~l~~G~l~v~~~n~~egfV~~~~~~~dI~I~g~~~~NRAl~GD~V~Vellp~~~w~~~~~~~~~~~~~ 201 (654)
+++|.+.|... .+++|+++++++|| |||.+++ ++||||++. +||+|||||+|.|++.++.
T Consensus 8 l~~lk~~~~~~~~~~~G~~~~~~~Gf--gF~~~d~-~~difi~~~-~~~~a~~GD~V~v~i~~~~--------------- 68 (644)
T 2id0_A 8 LAQLKQQLHSQTPRAEGVVKATEKGF--GFLEVDA-QKSYFIPPP-QMKKVMHGDRIIAVIHSEK--------------- 68 (644)
T ss_dssp HHHHHHHHHHTSCEEEEEEECCSSSC--EEEECSS-SCEEEECHH-HHTTSCTTCEEEEEEECCS---------------
T ss_pred HHHHHHhHHhhCCeEEEEEEEecCCc--EEEEECC-CCCEEECHH-HHhcCCCCCEEEEEEecCC---------------
Confidence 56677777776 48999999999999 9999986 689999997 9999999999999998752
Q ss_pred CCCccccccccccCCCCCCCCCCCCceeEEEEEeecCceeeeeecCCCCCCCceEEEEeCCCCCCcEEEcccccccc---
Q psy4856 202 GEDEEGEDGKLIKGNKTVPPAERRPTGQIVGIIKRKWRQYCGILQPNPLAGSSRHLFVPAERKIPKIRVETRQIATL--- 278 (654)
Q Consensus 202 ~~~~~~~~~~~l~~~~~~~~~~~~ptGkVVgIi~R~~r~~vG~l~~~~~~~~~~~l~vP~D~riP~I~I~t~q~~~l--- 278 (654)
.+++|+|+.|++|++..+||++... .+..+++|.|++++. .|++++...+
T Consensus 69 ----------------------~~~eg~v~~iler~~~~~vg~~~~~----~~~~~v~pdd~~~~~-~i~~~~~~~~~~~ 121 (644)
T 2id0_A 69 ----------------------ERESAEPEELVEPFLTRFVGKVQGK----NDRLAIVPDHPLLKD-AIPCRAARGLNHE 121 (644)
T ss_dssp ----------------------SSCEEEEEEEEECSCSEEEEEEEEE----TTEEEEEESSTTCCS-CEECCBCSSCCCC
T ss_pred ----------------------CCeEEEEEEEEecCCCEEEEEEEEe----CCEEEEEECCCCccc-ccccccccccccc
Confidence 2489999999999999999999875 567899999999998 9988876553
Q ss_pred --CCCEEEEEEeecCCCCCCc-cEEEEEecCCCCChhhHHHHHhhcCCCCCCCCcHHHHhcCCCCCCCCCCCC------c
Q psy4856 279 --SGQRIVVAIDSWPRHSRYP-QGHFVRALGPIGDKDTENEVLLLEHDVPHSKFSDLVLSYLPPMPWEKSTGR------P 349 (654)
Q Consensus 279 --~~~rvvV~Id~Wp~~s~~P-~Ghiv~~LG~~gd~~~E~~~iL~e~~i~~~~Fs~~vl~~l~~~~~~i~~~R------~ 349 (654)
.|++|+|+|++||..+.+| .|+|+++||..||+++|++++|.+|+||.+ ||++++++++.. . .+| +
T Consensus 122 ~~~g~~v~v~i~~~p~~~~~p~~g~i~~~LG~~~d~~~e~~~~l~~~~l~~~-fp~~~~~~~~~~---~-~~R~Dlr~l~ 196 (644)
T 2id0_A 122 FKEGDWAVAEMRRHPLKGDRSFYAELTQYITFGDDHFVPWWVTLARHNLEKE-APDGVATEMLDE---G-LVREDLTALD 196 (644)
T ss_dssp CCSSCEEEEEEEECGGGTCSSCEEEEEEEEECTTCTTHHHHHHHHHTTCCCS-CCCCCCCCCCCS---C-CCCCCCCSSC
T ss_pred CCCCCEEEEEEecCcCCCCCCceEEEEEEeCCCCCccchHHHHHHHcCCCCC-CChHHhhcCCcc---c-ccceeccCCc
Confidence 8999999999999998999 999999999999999999999999999997 998877664321 1 134 9
Q ss_pred eeeeCCCCce---------eccCCeEEEEEEe-ccCCccCCCc----------eeeec-c-----CCcchhhhHHHH---
Q psy4856 350 WCSGTSIGLS---------QISTGVISVGLEQ-GFPSLLKPRT----------TFVFY-D-----FPRTTRTNFILL--- 400 (654)
Q Consensus 350 ~~tIDp~~~~---------~l~~g~~~lgVHI-DVs~~V~~~s----------tsvYL-d-----LP~~Ls~~lcSL--- 400 (654)
+|||||++|+ ++++|+|+||||| ||||||+||| ||||| + ||+.||+++|||
T Consensus 197 ~~TID~~~a~D~DDAvsie~~~~g~~~l~VHIADVs~yV~~gs~LD~eA~~RgtSvYlp~~~iPMLP~~Ls~~lcSL~p~ 276 (644)
T 2id0_A 197 FVTIDSASTEDMDDALFAKALPDDKLQLIVAIADPTAWIAEGSKLDKAAKIRAFTNYLPGFNIPMLPRELSDDLCSLRAN 276 (644)
T ss_dssp CBEEECSSCSCCCEEEEECCCSSSCEEEEEEEECGGGTCCTTSHHHHHHHHHCBCEEETTEEECSSCHHHHTTTSSCCSS
T ss_pred EEEEcCCCCCcccceEEEEEcCCCCEEEEEEeccHHHeeCCCCHHHHHHHHhCCcEeCCCEEEeCCCHHHhcCcccCCCC
Confidence 9999999999 3568999999999 9999999999 99999 7 999999999999
Q ss_pred ---Hhh----------------------------------h--------------------------------------h
Q psy4856 401 ---FLF----------------------------------Q--------------------------------------A 405 (654)
Q Consensus 401 ---la~----------------------------------q--------------------------------------a 405 (654)
+|| | |
T Consensus 277 ~dR~a~s~~~~id~~G~v~~~~~~~~svI~s~~rltY~~v~~~l~~~~~~~~~~~~~~~~L~~L~~la~~lr~~R~~~Ga 356 (644)
T 2id0_A 277 EVRPVLACRMTLSADGTIEDNIEFFAATIESKAKLVYDQVSDWLENTGDWQPESEAIAEQVRLLAQICQRRGEWRHNHAL 356 (644)
T ss_dssp CEEEEEEEEEEECSSCCCSTTCCEEEEEEECCCEEEHHHHHHHTTCCSSCCCSCHHHHHHHHHHHHHHHHHHHHHHHHSC
T ss_pred CceEEEEEEEEEeCCCCEeeccEEEEEEEEeccccCHHHHHHHHhCCCccccccHHHHHHHHHHHHHHHHHHHHHHhCCC
Confidence 444 0 7
Q ss_pred hcccccCCC--------ccc------------------HHHHHHHHHHHhc-CCceeeeCCChH------HHHHHHHhhc
Q psy4856 406 VYFSSGMLQ--------QSD------------------FHHYGLATPIYTH-FTSPIRRYADII------VHRLLAACIG 452 (654)
Q Consensus 406 l~l~~pe~~--------~~d------------------~AN~~vA~~~~~~-~p~l~R~h~~p~------l~~~l~~~~g 452 (654)
++|++||.+ +.+ +||++||+|+.++ .|++||+|+.|+ +.++++.. |
T Consensus 357 i~~~~pe~~~~ld~~g~~~~i~~~~~~~a~~lIeE~MllAN~~vA~~l~~~~~~~lyR~h~~p~~~~l~~l~~~~~~~-g 435 (644)
T 2id0_A 357 VFKDRPDYRFILGEKGEVLDIVAEPRRIANRIVEEAMIAANICAARVLRDKLGFGIYNVHMGFDPANADALAALLKTH-G 435 (644)
T ss_dssp CCCCCCCEEEEECTTSCEEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHTSCCCEEEBCCBCTTTHHHHHHHHHHH-T
T ss_pred ccccCCceEEEECCCCCEEEEEEecCCcHHHHHHHHHHHHHHHHHHHHHHcCCCceeecCCCCCHHHHHHHHHHHHHc-C
Confidence 888888722 101 4999999999995 899999999886 44555555 6
Q ss_pred CCC---------chhHHHHHHh-------------hcccccccCCccccccCCCCCcccccCccccchhHHHHHHHHHHH
Q psy4856 453 ADA---------TYPSLLDKKA-------------STALCYNLVSDFHHYGLATPIYTHFTSPIRRYADIIVHRLLAACI 510 (654)
Q Consensus 453 ~~~---------~~~~llr~l~-------------~m~~~s~s~~~~~H~gLa~~~YTHfTSPIRRY~DLivHR~L~a~l 510 (654)
+.. .++++++.+. .|+....++++.+|||||++.|||||||||||+||+|||||+++|
T Consensus 436 ~~l~~~~~~~~~~~~~l~~~~~~~~~~~l~~~l~r~~~~a~ys~~~~~HfgLa~~~YthfTSPIRRY~DLivHR~l~a~l 515 (644)
T 2id0_A 436 LHVDAEEVLTLDGFCKLRRELDAQPTGFLDSRIRRFQSFAEISTEPGPHFGLGLEAYATWTSPIRKYGDMINHRLLKAVI 515 (644)
T ss_dssp CCCCHHHHTSHHHHHHHHHHHHTSSSSHHHHHHTTSBCCCEEESSCCCBTTTTBSSCBCCSCTTTBHHHHHHHHHHHHHT
T ss_pred CCCCCCcccCHHHHHHHHHHhcCChHHHHHHHHHHhcccccccCCCCCchhcCCCceeeeCChhhcchHHHHHHHHHHHH
Confidence 621 2444544432 233111168899999999999999999999999999999999999
Q ss_pred hCCCCCCCccCHHHHHHHHhcCCCCCCcCcccccCCCCCCCcccccCCccCccchhhHHHHHHHHhHHhhHHHHHHHHHH
Q psy4856 511 GADATYPSLLDKKASTALCYNLPGCTDIDDALHCRPLPNGNIEVTYPSLGMSQSCKDIQACLLELGYNLNYRNRQAQYAG 590 (654)
Q Consensus 511 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ln~r~r~A~~ae 590 (654)
.+++.+.. . +.+|. +||.++|+|++||
T Consensus 516 ~~~~~~~~--~----~~~~~-----------------------------------------------~~s~~er~a~~ae 542 (644)
T 2id0_A 516 KGETATRP--Q----DEITV-----------------------------------------------QMAERRRLNRMAE 542 (644)
T ss_dssp TC----CC--C----TTHHH-----------------------------------------------HHHHHHHHHHHHH
T ss_pred cCCCCCcc--H----HHHHH-----------------------------------------------HHHHHHHHHHHHH
Confidence 86643210 0 12333 9999999999999
Q ss_pred HHHHHHHHHHHhhcccCc--ccceEEEcccccceEEEECCCCcccccceeeeccCCC--ccEEec
Q psy4856 591 RASVALHTHLFFRRKSIT--EEEVARRTDLRHLDVCSVDPPGCTDIDDALHCRPLPN--GNIEVT 651 (654)
Q Consensus 591 r~~~~l~~~~~l~~~~g~--~~~~~~i~~~~~~g~~~v~~~~~~~~eg~vh~~~~~~--~~~~~~ 651 (654)
|++.++|++.||++++|+ ++. |+|++++++|+| |+.+.. .+||+||+|.|++ |||+|.
T Consensus 543 r~~~~~~~~~~l~~~vGe~~~f~-g~V~~V~~~G~f-V~L~~~-gieGlVhis~l~~~~d~~~~d 604 (644)
T 2id0_A 543 RDVGDWLYARFLKDKAGTDTRFA-AEIVDISRGGMR-VRLVDN-GAIAFIPAPFLHAVRDELVCS 604 (644)
T ss_dssp HHHHHHHHHHHHGGGTTSCCCEE-EEEEEEETTEEE-EEETTT-CCEEEEEGGGTCSCGGGEEEE
T ss_pred HHHHHHHHHHHhhhccCCCceEE-EEEEEEeCCceE-EEEcCC-cEEEEEEchhccCcCceeEEc
Confidence 999999999999999999 999 999999999999 766654 4999999999985 999985
No 4
>2r7d_A Ribonuclease II family protein; structural genomics, PSI-2, structure initiative, northeast structural genomics consort NESG; 1.80A {Deinococcus radiodurans R1} SCOP: b.40.4.5 b.40.4.16 PDB: 2r7f_A
Probab=100.00 E-value=5.2e-50 Score=443.83 Aligned_cols=273 Identities=18% Similarity=0.173 Sum_probs=216.0
Q ss_pred CCCccEEEEEecCCCCChhhHHHH-------------HhhcCCCCCCCCcHHHHhcCCCCCCCCCCCC------ceeeeC
Q psy4856 294 SRYPQGHFVRALGPIGDKDTENEV-------------LLLEHDVPHSKFSDLVLSYLPPMPWEKSTGR------PWCSGT 354 (654)
Q Consensus 294 s~~P~Ghiv~~LG~~gd~~~E~~~-------------iL~e~~i~~~~Fs~~vl~~l~~~~~~i~~~R------~~~tID 354 (654)
++.|.|+|+++||..++++++.+. ++.++++|.. || +++..+.....+| ++||||
T Consensus 20 ~~~~~g~i~~~LG~~~~~~~~~~lL~~~G~~~~~~~~~~~~~~lp~~-fp-----~l~~~~~~~~~~R~Dlr~l~~~TID 93 (469)
T 2r7d_A 20 GRADKSRVLRDLKLPETPEAAHALLLRLGVWDEARTPYADRLRAALN-AV-----ELPVPDFDPAEERLDLTHLPTFAID 93 (469)
T ss_dssp TSCSCCHHHHHTTCCCSHHHHHHHHHHHTSSCTTCCCHHHHTTCCCS-CC-----CCCCCCCCTTSCCEECTTSCEEEEE
T ss_pred CCCcceeEeeecCCCCChhhHHHHHHhcCCCCchhhHHHHHcCCCCC-Cc-----ccCCCCcccccCceecccCCEEEEc
Confidence 567999999999999999999854 5567899997 99 1221111110234 899999
Q ss_pred CCCce---------eccCCeEEEEEEe-ccCCccCCCc----------eeeec-c-----CCcchhhhHHHH------Hh
Q psy4856 355 SIGLS---------QISTGVISVGLEQ-GFPSLLKPRT----------TFVFY-D-----FPRTTRTNFILL------FL 402 (654)
Q Consensus 355 p~~~~---------~l~~g~~~lgVHI-DVs~~V~~~s----------tsvYL-d-----LP~~Ls~~lcSL------la 402 (654)
|++|+ ++++|+|+||||| ||||||+||| ||||| + ||+.| +++||| +|
T Consensus 94 ~~~a~D~DDAvsve~~~~g~~~l~VHIADVs~~V~~gs~LD~eA~~RgtSvYlp~~~ipMLP~~L-~~~cSL~pg~dr~a 172 (469)
T 2r7d_A 94 DEGNQDPDDAVGVEDLGGGLTRLWVHVADVAALVAPDSPLDLEARARGATLYLPDRTIGMLPDEL-VAKAGLGLHEVSPA 172 (469)
T ss_dssp CTTCCCCCEEEEEEECSTTCEEEEEEEECGGGTCCTTSHHHHHHHHHCBCEECSSCEECSSCHHH-HHHHSTTSSSSEEE
T ss_pred CCCCCCccceEEEEEeCCCCEEEEEEeccHhheeCCCCHHHHHHHHhCceEecCCceEcCCChHH-hcccCCCCCCceEE
Confidence 99998 3578899999999 9999999999 99999 7 99999 999999 44
Q ss_pred h--------------------------------h----------------------------hhcccccCCC------c-
Q psy4856 403 F--------------------------------Q----------------------------AVYFSSGMLQ------Q- 415 (654)
Q Consensus 403 ~--------------------------------q----------------------------al~l~~pe~~------~- 415 (654)
| | |++|++||.+ +
T Consensus 173 ls~~~~id~~G~i~~~~~~~svI~s~rltY~~v~~~l~~~~~~L~~L~~la~~lr~~R~~~Gai~~~~pe~~i~~d~~~~ 252 (469)
T 2r7d_A 173 LSICLDLDPDGNAEAVDVLLTRVKVQRLAYQEAQARLEAGEEPFVTLARLARASRRLREGEGALSIDLPEVRVKADETGA 252 (469)
T ss_dssp EEEEEEECTTSCEEEEEEEEEEECEEEEEHHHHHHHHHTTCTTHHHHHHHHHHHHHHHHHTTCCCCCCCCEEEEEETTEE
T ss_pred EEEEEEEcCCCCEeeeEEEEEEEEeccccHHHHHHHHhCCcHHHHHHHHHHHHHHHHHHhCCCcccCCCceEEEECCCcc
Confidence 3 0 8999998832 0
Q ss_pred --------------cc---HHHHHHHHHHHh-cCCceeeeCCChHHHHHHHHhhcCCCchhHHHHHHhhcc-cccccCCc
Q psy4856 416 --------------SD---FHHYGLATPIYT-HFTSPIRRYADIIVHRLLAACIGADATYPSLLDKKASTA-LCYNLVSD 476 (654)
Q Consensus 416 --------------~d---~AN~~vA~~~~~-~~p~l~R~h~~p~l~~~l~~~~g~~~~~~~llr~l~~m~-~~s~s~~~ 476 (654)
++ +||++||+++.+ ++|++||+|+.|+..++ ..| ...+.+ .+++|+ ..+ ++.+
T Consensus 253 ~i~~~~~~~a~~lIeE~MilAN~~vA~~l~~~~ip~~yR~h~~p~~~~~---~~~--~~~~~~--l~r~m~~a~y-~~~~ 324 (469)
T 2r7d_A 253 SVFPLPKPEMRTVVQECMTLAGWGTAIFADDNEIPLPFATQDYPTREVA---GDT--LPAMWA--RRKTLARTRF-QPSP 324 (469)
T ss_dssp EEEECCCCHHHHHHHHHHHHHHHHHHHHHHHTTCCCCEEEECCCSSCCC---CCS--HHHHHH--HHHHCCCEEE-ESSC
T ss_pred eEEecCCCcHHHHHHHHHHHHHHHHHHHHHHcCCCeeEeeCCCCCcccC---cch--HHHHHH--HHHhcccccc-cCCC
Confidence 01 499999999998 69999999999853221 001 111222 234565 222 4788
Q ss_pred cccccCCCCCcccccCccccchhHHHHHHHHHHHhCCCCCCCccCHHHHHHHHhcCCCCCCcCcccccCCCCCCCccccc
Q psy4856 477 FHHYGLATPIYTHFTSPIRRYADIIVHRLLAACIGADATYPSLLDKKASTALCYNLPGCTDIDDALHCRPLPNGNIEVTY 556 (654)
Q Consensus 477 ~~H~gLa~~~YTHfTSPIRRY~DLivHR~L~a~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~ 556 (654)
.+|||||++.|||||||||||+||+|||||+++|.+++ ..+.+.++.+|.
T Consensus 325 ~~HfgL~~~~YthfTSPIRRY~DLivHr~L~a~l~~~~----~~~~~~l~~~~~-------------------------- 374 (469)
T 2r7d_A 325 GPHHGMGLDLYAQATSPMRRYLDLVVHQQLRAFLAGRD----PLSSKVMAAHIA-------------------------- 374 (469)
T ss_dssp CCBTTTTBSCCCCCSCTTTBHHHHHHHHHHHHHHTTCC----CCCHHHHHHHHH--------------------------
T ss_pred CCchhhCccceeeECCcccccHHHHHHHHHHHHHcCCC----CCCHHHHHHHHH--------------------------
Confidence 99999999999999999999999999999999998652 234566666666
Q ss_pred CCccCccchhhHHHHHHHHhHHhhHHHHHHHHHHHHHHHHHHHHHhhcccCcccceEEEcccccceEEEECCCCcccccc
Q psy4856 557 PSLGMSQSCKDIQACLLELGYNLNYRNRQAQYAGRASVALHTHLFFRRKSITEEEVARRTDLRHLDVCSVDPPGCTDIDD 636 (654)
Q Consensus 557 ~~~~~~~~~~~~~~~l~~~~~~ln~r~r~A~~aer~~~~l~~~~~l~~~~g~~~~~~~i~~~~~~g~~~v~~~~~~~~eg 636 (654)
+||.++|+|++|||++.++|++.||++++|++|. |+|+++. ..+|
T Consensus 375 ---------------------~~~~~er~a~~aer~~~~~~~~~~l~~~~g~~f~-g~vv~l~-------------~~~g 419 (469)
T 2r7d_A 375 ---------------------ESQMNADATRQAERLSRRHHTLRFIAAQPERVWD-AVVVDRR-------------GAQA 419 (469)
T ss_dssp ---------------------HHHHHHHHHHHHHHHHHHHHHHHHHHTCTTCCEE-EEEEEEE-------------TTEE
T ss_pred ---------------------HHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCEEE-EEEEEEe-------------CcEE
Confidence 9999999999999999999999999999999999 8876421 3589
Q ss_pred eeeeccCCCc
Q psy4856 637 ALHCRPLPNG 646 (654)
Q Consensus 637 ~vh~~~~~~~ 646 (654)
+||+++|+.+
T Consensus 420 lV~v~~l~~d 429 (469)
T 2r7d_A 420 TLLIPDLAFD 429 (469)
T ss_dssp EEEEGGGTEE
T ss_pred EEEECCCCeE
Confidence 9999999876
No 5
>2dok_A Telomerase-binding protein EST1A; telomerase-associated protein, unknown function; 1.80A {Homo sapiens} PDB: 2hww_A 2hwx_A
Probab=98.32 E-value=8.4e-08 Score=93.48 Aligned_cols=79 Identities=18% Similarity=0.204 Sum_probs=59.8
Q ss_pred CCcEEEEecCcccc--ccc---------------cCCCCCCccchhhHHHHHHHHHhHhhhhhhcc-------------C
Q psy4856 9 SRKFYVFVNEHHYE--TYV---------------EQEPGESVNDRNDRALRRVATWYVKYEEHLES-------------A 58 (654)
Q Consensus 9 ~~~~~vF~Ne~~~~--t~v---------------~~~~~es~~drn~r~i~~aa~wY~~~~~Hl~~-------------~ 58 (654)
.|+++.|-|++++. +++ ..+..++.+++||++|+.+|.|| ++|++. .
T Consensus 74 AR~a~~~L~~~~~~~~~~i~~~~~~g~~l~~v~~~~~~~~~~~~~~D~~IL~~a~~l---~~~~~~~~~~~~~~~~~~~~ 150 (186)
T 2dok_A 74 ARKSIEFLEQRFESRDSCLRALTSRGNELESIAFRSEDITGQLGNNDDLILSCCLHY---CKDKAKDFMPASKEEPIRLL 150 (186)
T ss_dssp HHHHHHHHHHHHHTTCTTEEEECTTSCEESCCTTCCCCC----CCHHHHHHHHHHTT---CCCCGGGGCCC---CCCEEE
T ss_pred HHHHHHHHHHHHhhCCCeEEEEeccCcccccccccccccccCCCCccHHHHHHHHHH---HHhcccccccccccccccCC
Confidence 35677777775433 332 22233456899999999999999 888752 3
Q ss_pred CeEEEEeCChhhHHHHhhcCcceeeHHHHHhh
Q psy4856 59 VRVILLSEDVRNRDLATQSGLLTSSIEGYIST 90 (654)
Q Consensus 59 ~~vvllt~d~~~~~~a~~~gi~~~s~~~yv~~ 90 (654)
.+|||||+|..++.+|...||.+.++.+|++.
T Consensus 151 ~~vvLvTnD~nLr~KA~~~Gi~~~~~~~~~~~ 182 (186)
T 2dok_A 151 REVVLLTDDRNLRVKALTRNVPVRDIPAFLTW 182 (186)
T ss_dssp EEEEEECCCHHHHHHHHHTTCCEECHHHHHHH
T ss_pred CcEEEEeCcHHHHHHHHHCCCeeCcHHHHHHH
Confidence 47999999999999999999999999999986
No 6
>1luz_A Protein K3, protein K2; stranded anti-parallel beta barrel, viral protein; 1.80A {Vaccinia virus} SCOP: b.40.4.5
Probab=97.61 E-value=5.3e-06 Score=70.99 Aligned_cols=47 Identities=4% Similarity=-0.083 Sum_probs=40.9
Q ss_pred HHhhcccCcccceEEEcccccceEEEECCCCcccccceeeec-cCCCccEE
Q psy4856 600 LFFRRKSITEEEVARRTDLRHLDVCSVDPPGCTDIDDALHCR-PLPNGNIE 649 (654)
Q Consensus 600 ~~l~~~~g~~~~~~~i~~~~~~g~~~v~~~~~~~~eg~vh~~-~~~~~~~~ 649 (654)
.|++.++|+.+. |.|+ +.+||.| |+...+..+|||||+| .++++||+
T Consensus 5 ~y~~~~vG~~~~-G~V~-v~~fG~F-Vel~~~~~~eGLvhis~el~~~~~~ 52 (88)
T 1luz_A 5 CYSLPNAGDVIK-GRVY-EKDYALY-IYLFDYPHFEAILAESVKMHMDRYV 52 (88)
T ss_dssp CSCCCCTTCEEE-EEEE-EETTEEE-EEETTCTTSEEEEGGGSSCCHHHHH
T ss_pred EecCCCCCCEEE-EEEE-EEccEEE-EEECCCCCeEEEEEeeHHhCccccc
Confidence 478889999999 9999 9999999 8776544699999999 99988864
No 7
>2ckz_B C25, DNA-directed RNA polymerase III 25 KD polypeptide; multiprotein complex, nucleotidyltransferase, nuclear protein, hypothetical protein; 3.2A {Saccharomyces cerevisiae}
Probab=97.56 E-value=9.7e-06 Score=80.85 Aligned_cols=52 Identities=12% Similarity=-0.068 Sum_probs=47.5
Q ss_pred HHHHHhhcccCcccceEEEcccccceEEEECCCCcccccceeeeccCCCccEEecC
Q psy4856 597 HTHLFFRRKSITEEEVARRTDLRHLDVCSVDPPGCTDIDDALHCRPLPNGNIEVTY 652 (654)
Q Consensus 597 ~~~~~l~~~~g~~~~~~~i~~~~~~g~~~v~~~~~~~~eg~vh~~~~~~~~~~~~~ 652 (654)
+++.||+.++|+++. |+|+++.++|+| |+.++ ++||++|++.+.+|+|+|+.
T Consensus 72 fk~~~f~p~vGEv~~-G~Is~Vt~fGif-VeL~g--~~eglv~~s~l~~d~~~fd~ 123 (218)
T 2ckz_B 72 FRAVVFKPFLGEIVT-GWISKCTAEGIK-VSLLG--IFDDIFIPQNMLFEGCYYTP 123 (218)
T ss_dssp EEEEEECCCTTCEEE-EEEEEEETTEEE-EECTT--SCCCEEEETTTSCTTCEEET
T ss_pred EEEEEecCCCCCEEE-EEEEEEccCcEE-EEccC--ccceEEEcHHHCCCCcEEcC
Confidence 678899999999999 999999999999 87765 48999999999999999964
No 8
>3ayh_B DNA-directed RNA polymerase III subunit RPC8; transcription; 2.19A {Schizosaccharomyces pombe}
Probab=97.31 E-value=3.1e-05 Score=76.38 Aligned_cols=51 Identities=10% Similarity=-0.054 Sum_probs=45.6
Q ss_pred HHHHHhhcccCcccceEEEcccccceEEEECCCCcccccceeeeccCCCccEEecC
Q psy4856 597 HTHLFFRRKSITEEEVARRTDLRHLDVCSVDPPGCTDIDDALHCRPLPNGNIEVTY 652 (654)
Q Consensus 597 ~~~~~l~~~~g~~~~~~~i~~~~~~g~~~v~~~~~~~~eg~vh~~~~~~~~~~~~~ 652 (654)
+++.||+.++|+++. |+|++++++|+| |+. + ++||++|++.+.+++|+|+.
T Consensus 72 fk~~~f~p~~GEv~~-G~Vs~vt~~Gif-V~l-g--~~eglv~~~~l~~d~~~fd~ 122 (203)
T 3ayh_B 72 FRLIIFRPFRGEVML-GKIKSCSEEGIR-VTI-S--FFDDIFIPKDMLFDPCVFRP 122 (203)
T ss_dssp EEEEEECCCTTCEEE-EEEEEEETTEEE-EEC-S--SCCCEEEEGGGBCTTEEEEG
T ss_pred EEEEEEccCCCCEEE-EEEEEEeccEEE-EEE-e--CceEEEEcHHhCCCCceECc
Confidence 556789999999999 999999999999 866 4 58999999999999999863
No 9
>1a62_A RHO; transcription termination, termination, RNA binding domain, transcription regulation, OB fold, F1-ATPase; 1.55A {Escherichia coli BL21} SCOP: a.140.3.1 b.40.4.5 PDB: 1a63_A 2a8v_A 1a8v_A
Probab=97.11 E-value=0.00048 Score=63.07 Aligned_cols=50 Identities=18% Similarity=0.331 Sum_probs=44.2
Q ss_pred eEEEEEEEecCCCceeEEeecC-----CCcCeEecCCCCCC--cCCCCCEEEEEEccCCC
Q psy4856 135 LLQGSFQASRENFLEGQVNCEG-----YDKPILVQGREGLN--RAIDGDTVAVRLLPESQ 187 (654)
Q Consensus 135 l~~G~l~v~~~n~~egfV~~~~-----~~~dI~I~g~~~~N--RAl~GD~V~Vellp~~~ 187 (654)
+..|+|.+.+.|| |||++++ .++||||+.. .++ .+.+||+|.+++-|..+
T Consensus 50 ~~~Gvlei~~dG~--GFlr~~~~~y~~~~~DiyVs~~-~irrf~lr~GD~V~g~vr~~~~ 106 (130)
T 1a62_A 50 FGDGVLEILQDGF--GFLRSADSSYLAGPDDIYVSPS-QIRRFNLRTGDTISGKIRPPKE 106 (130)
T ss_dssp EEEEEEEECTTSC--EEEECGGGTTCCCTTCEEECHH-HHHHTTCCTTCEEEEEEECCCT
T ss_pred EEEEEEEEcCCCe--EEEecCCcCCCCCCCCEEECHH-HHhHhCCCCCCEEEEEEeCCCC
Confidence 5899999999999 9999983 4689999997 888 99999999999987653
No 10
>1kl9_A Eukaryotic translation initiation factor 2 subuni; OB fold, helical domain; 1.90A {Homo sapiens} SCOP: a.60.14.1 b.40.4.5
Probab=97.04 E-value=0.00011 Score=71.15 Aligned_cols=51 Identities=10% Similarity=0.137 Sum_probs=37.6
Q ss_pred HHHHhhc---ccCcccceEEEcccccceEEEECCCCcccccceeeeccCCCccEEe
Q psy4856 598 THLFFRR---KSITEEEVARRTDLRHLDVCSVDPPGCTDIDDALHCRPLPNGNIEV 650 (654)
Q Consensus 598 ~~~~l~~---~~g~~~~~~~i~~~~~~g~~~v~~~~~~~~eg~vh~~~~~~~~~~~ 650 (654)
+|+||++ +.|+.+. |.|+++.+||.| |+......++||||+|.++.++++.
T Consensus 4 ~~~~~~~~~p~~G~iv~-G~V~~I~~fGaF-V~L~e~~g~eGLvhiSels~~~v~~ 57 (182)
T 1kl9_A 4 SCRFYQHKFPEVEDVVM-VNVRSIAEMGAY-VSLLEYNNIEGMILLSELSRRRIRS 57 (182)
T ss_dssp CCCSSSSSSCCTTCEEE-EEEEEECSSEEE-EEETTTTTEEEEEEGGGC-------
T ss_pred eeEeccccCCCCCCEEE-EEEEEEeccEEE-EEEccCCCcEEEEEHHHCCCcccCC
Confidence 4678887 6899999 999999999999 8774334699999999999888753
No 11
>2a19_A EIF-2- alpha, eukaryotic translation initiation factor 2 alpha; transferase, protein biosynthesis, protein synthesis transferase complex; HET: TPO ANP; 2.50A {Saccharomyces cerevisiae} PDB: 2a1a_A* 1q46_A
Probab=96.88 E-value=0.00017 Score=69.39 Aligned_cols=49 Identities=12% Similarity=0.125 Sum_probs=34.8
Q ss_pred HHHhhcc---cCcccceEEEcccccceEEEECCCCcccccceeeeccCCCccEE
Q psy4856 599 HLFFRRK---SITEEEVARRTDLRHLDVCSVDPPGCTDIDDALHCRPLPNGNIE 649 (654)
Q Consensus 599 ~~~l~~~---~g~~~~~~~i~~~~~~g~~~v~~~~~~~~eg~vh~~~~~~~~~~ 649 (654)
|+||+++ .|+.+. |.|+++.+||.| |+......++||||+|.+++++++
T Consensus 5 ~~~~~~~~p~~G~iv~-G~V~~i~~fGaF-V~L~e~~gveGLvhiSels~~~v~ 56 (175)
T 2a19_A 5 CRFYENKYPEIDDIVM-VNVQQIAEMGAY-VKLLEYDNIEGMILLSELSRRRIR 56 (175)
T ss_dssp CCSSSSSSCCTTCEEE-EEEEEEETTEEE-EEETTTTTCEEEEECC--------
T ss_pred eEEhhhcCCCCCCEEE-EEEEEEecceEE-EEEcCCCCcEEEEEHHHcCCcccC
Confidence 5678877 899999 999999999999 777433458999999999988764
No 12
>3h0g_G DNA-directed RNA polymerase II subunit RPB7; transcription, multi-protein complex, DNA- binding, magnesium; 3.65A {Schizosaccharomyces pombe}
Probab=96.70 E-value=9.2e-05 Score=71.08 Aligned_cols=50 Identities=6% Similarity=0.033 Sum_probs=42.8
Q ss_pred HHHHHHhhcccCcccceEEEcccccceEEEECCCCcccccceeeeccCCCccEEec
Q psy4856 596 LHTHLFFRRKSITEEEVARRTDLRHLDVCSVDPPGCTDIDDALHCRPLPNGNIEVT 651 (654)
Q Consensus 596 l~~~~~l~~~~g~~~~~~~i~~~~~~g~~~v~~~~~~~~eg~vh~~~~~~~~~~~~ 651 (654)
.+.+.+|+.+.|+.+. |.|++++++|+| |+.. +++|+||+|.| +++|+|+
T Consensus 74 ~f~~ivf~p~~Gev~~-G~V~~v~~fG~F-V~l~---~~~glVh~s~l-~~~~~~d 123 (172)
T 3h0g_G 74 KYRAVLWRPFRGEVVD-AIVTTVNKMGFF-ANIG---PLNVFVSSHLV-PPDMKFD 123 (172)
T ss_dssp EEEEEEECCCTTCEEE-CCCCEEETTEEE-CCBT---TBCCEEEGGGS-CTTCCCB
T ss_pred EEEEeeeccCCCCEEE-EEEEEEEcceEE-EEeC---CeEEEEEHHHC-CCccccC
Confidence 3667889999999999 999999999999 8663 47899999999 5677665
No 13
>2c35_B Human RPB7, DNA-directed RNA polymerase II 19 kDa polypeptide; transcription, nucleotidyltransferase; 2.70A {Homo sapiens} SCOP: b.40.4.5 d.230.1.1
Probab=96.69 E-value=0.00048 Score=65.93 Aligned_cols=49 Identities=12% Similarity=0.165 Sum_probs=40.6
Q ss_pred HHHHHhhcccCcccceEEEcccccceEEEECCCCcccccceeeeccCCCccEEec
Q psy4856 597 HTHLFFRRKSITEEEVARRTDLRHLDVCSVDPPGCTDIDDALHCRPLPNGNIEVT 651 (654)
Q Consensus 597 ~~~~~l~~~~g~~~~~~~i~~~~~~g~~~v~~~~~~~~eg~vh~~~~~~~~~~~~ 651 (654)
+.+.+|+.++|+.+. |.|+++.+||+| |+.. +++|+||+|.|+ ++|+|+
T Consensus 72 ~~~~~~~~~~Gev~~-G~V~~v~~fG~f-V~l~---~~~glvhis~l~-~~~~~d 120 (172)
T 2c35_B 72 YKAIVFRPFKGEVVD-AVVTQVNKVGLF-TEIG---PMSCFISRHSIP-SEMEFD 120 (172)
T ss_dssp EEEEEECCCTTCEEE-EEEEEEETTEEE-EEET---TEEEEEEGGGSC-TTEEEE
T ss_pred EEEEEeeCCCCCEEE-EEEEEEeCCEEE-EEEC---CEEEEEEHHHCC-CCcEEC
Confidence 344578889999999 999999999999 7663 468999999995 667774
No 14
>4ayb_E DNA-directed RNA polymerase; transferase, multi-subunit, transcription; 3.20A {Sulfolobus shibatae} PDB: 2y0s_E 4b1o_E 4b1p_T 2waq_E 2wb1_E 2pmz_E 3hkz_E
Probab=96.68 E-value=0.00085 Score=64.63 Aligned_cols=50 Identities=10% Similarity=0.151 Sum_probs=43.8
Q ss_pred HHHHHhhcccCcccceEEEcccccceEEEECCCCcccccceeeeccCCCccEEec
Q psy4856 597 HTHLFFRRKSITEEEVARRTDLRHLDVCSVDPPGCTDIDDALHCRPLPNGNIEVT 651 (654)
Q Consensus 597 ~~~~~l~~~~g~~~~~~~i~~~~~~g~~~v~~~~~~~~eg~vh~~~~~~~~~~~~ 651 (654)
+.+..++..+|+.+. |.|++++++|+| |+.. +++|+||+|.+++|+|.|.
T Consensus 72 ~~~iv~~p~~Gev~~-G~V~~v~~~G~f-v~l~---~~~glvh~s~l~~d~~~~d 121 (180)
T 4ayb_E 72 FDMITYVPVVQEVVE-GEVLQVDNYGVF-VNLG---PMDGLVHISQITDDTLKYD 121 (180)
T ss_dssp EEEEEECCCTTCEEE-EEEEEEETTEEE-EECS---SSEEEEEGGGSCSSCEEEC
T ss_pred hheeeeeccCCCEEE-EEEeeeccceEE-EEEC---CccceEEeeecCCCccccc
Confidence 455668889999999 999999999999 7643 4799999999999999885
No 15
>2b8k_G B16, DNA-directed RNA polymerase II 19 kDa polypeptide; DNA-dependent RNA polymerase, cellular RNA polymerase; 4.15A {Saccharomyces cerevisiae} SCOP: b.40.4.5 d.230.1.1
Probab=96.43 E-value=0.00072 Score=67.14 Aligned_cols=49 Identities=6% Similarity=0.011 Sum_probs=40.3
Q ss_pred HHHHHhhcccCcccceEEEcccccceEEEECCCCcccccceeeeccCCCccEEec
Q psy4856 597 HTHLFFRRKSITEEEVARRTDLRHLDVCSVDPPGCTDIDDALHCRPLPNGNIEVT 651 (654)
Q Consensus 597 ~~~~~l~~~~g~~~~~~~i~~~~~~g~~~v~~~~~~~~eg~vh~~~~~~~~~~~~ 651 (654)
+.+.+|+.++|+.+. |.|+++.+||+| |+... +|||||+|.|+ ++|+|+
T Consensus 74 ~~~i~~~p~vGev~~-G~V~~vt~fG~F-Velg~---~dGlVhiS~l~-d~~~~d 122 (215)
T 2b8k_G 74 YRAVVFKPFKGEVVD-GTVVSCSQHGFE-VQVGP---MKVFVTKHLMP-QDLTFN 122 (215)
T ss_dssp CCEEEECCCTTEEEE-EEEEEEETTEEE-EECTT---SEEEEEGGGSC-SSCCCB
T ss_pred hhhheeccCCCCEEE-EEEEEEecceEE-EEecC---cEEEEEHHHCC-ccceec
Confidence 344578889999999 999999999999 87742 79999999996 456554
No 16
>1y14_B B16, RPB7, DNA-directed RNA polymerase II 19 kDa polypeptide; transferase; 2.30A {Saccharomyces cerevisiae} SCOP: b.40.4.5 d.230.1.1 PDB: 1nt9_G 1wcm_G 1pqv_G 1y1v_G 1y1w_G 1y1y_G 1y77_G* 2b63_G* 2ja5_G* 2ja6_G* 2ja7_G* 2ja8_G* 2r7z_G 2r92_G 2r93_G 2vum_G* 3fki_G 3h3v_H 3hou_G* 3hov_G* ...
Probab=96.42 E-value=0.00083 Score=64.26 Aligned_cols=51 Identities=6% Similarity=-0.003 Sum_probs=42.4
Q ss_pred HHHHHHHhhcccCcccceEEEcccccceEEEECCCCcccccceeeeccCCCccEEec
Q psy4856 595 ALHTHLFFRRKSITEEEVARRTDLRHLDVCSVDPPGCTDIDDALHCRPLPNGNIEVT 651 (654)
Q Consensus 595 ~l~~~~~l~~~~g~~~~~~~i~~~~~~g~~~v~~~~~~~~eg~vh~~~~~~~~~~~~ 651 (654)
..+.+.+|+.+.|+.+. |.|+++.+||+| |+... +||+||+|.|+ ++|+|+
T Consensus 72 ~~~~~~~~~~~~Gev~~-G~V~~v~~fG~F-V~l~~---~dglvhis~l~-~~~~~d 122 (171)
T 1y14_B 72 VKYRAVVFKPFKGEVVD-GTVVSCSQHGFE-VQVGP---MKVFVTKHLMP-QDLTFN 122 (171)
T ss_dssp EEEEEEEECCCTTCEEE-EEEEEEETTEEE-EEETT---EEEEEEGGGSC-TTCEEC
T ss_pred EEEEEEEccCCCCCEEE-EEEEEEecCEEE-EEecC---eEEEEEHHHCC-CCceEC
Confidence 34566688999999999 999999999999 76642 79999999996 566664
No 17
>3bzc_A TEX; helix-turn-helix, helix-hairpin-helix, S1 domain, YQGF domain, transcription, RNA binding protein; 2.27A {Pseudomonas aeruginosa} SCOP: a.60.2.6 a.60.2.6 a.294.1.1 b.40.4.5 c.55.3.13 PDB: 3bzk_A 2oce_A
Probab=96.38 E-value=0.0017 Score=75.76 Aligned_cols=39 Identities=21% Similarity=0.153 Sum_probs=33.9
Q ss_pred cccCcccceEEEcccccceEEEECCCCcccccceeeeccCCCc
Q psy4856 604 RKSITEEEVARRTDLRHLDVCSVDPPGCTDIDDALHCRPLPNG 646 (654)
Q Consensus 604 ~~~g~~~~~~~i~~~~~~g~~~v~~~~~~~~eg~vh~~~~~~~ 646 (654)
-++|.++. |.|+++.+||.| |+.. . .++||||+|.|+++
T Consensus 652 l~vG~iv~-G~V~~V~~fGaF-V~l~-~-~~eGLVhiS~Lsd~ 690 (785)
T 3bzc_A 652 LKPGMVLE-GVVTNVTNFGAF-VDIG-V-HQDGLVHISALSEK 690 (785)
T ss_dssp CCTTCBCC-CEEEEEETTEEE-EECS-S-SSEEEEETTTSCSS
T ss_pred cCCCCEEE-EEEEEEecCCeE-EEeC-C-CcEEEEEHHHcCcc
Confidence 47899999 999999999999 7663 2 58999999999974
No 18
>2eqs_A ATP-dependent RNA helicase DHX8; S1 domain, OB-fold, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=96.12 E-value=0.0021 Score=56.25 Aligned_cols=43 Identities=12% Similarity=0.061 Sum_probs=35.4
Q ss_pred hhcccCcccceEEEcccccceEEEECCCCc-ccccceeeeccCCCc
Q psy4856 602 FRRKSITEEEVARRTDLRHLDVCSVDPPGC-TDIDDALHCRPLPNG 646 (654)
Q Consensus 602 l~~~~g~~~~~~~i~~~~~~g~~~v~~~~~-~~~eg~vh~~~~~~~ 646 (654)
.+.++|+.+. |.|+++.+||.| |+..++ ..++|+||+|.++++
T Consensus 8 ~~~~vG~i~~-G~V~~v~~fG~F-V~l~~~~~~~~Glvhisel~~~ 51 (103)
T 2eqs_A 8 EEPTIGDIYN-GKVTSIMQFGCF-VQLEGLRKRWEGLVHISELRRE 51 (103)
T ss_dssp SSCCTTCEEE-EEEEEECSSCEE-EEECSSSSCCEEEECGGGTSSS
T ss_pred ccCCCCCEEE-EEEEEEeccEEE-EEEcCCCCCeEEEEEHHHCCCC
Confidence 3457899999 999999999999 777654 258999999999543
No 19
>1go3_E DNA-directed RNA polymerase subunit E; transferase, transferase, transcription; 1.75A {Methanococcus jannaschii} SCOP: b.40.4.5 d.230.1.1
Probab=95.72 E-value=0.0055 Score=59.22 Aligned_cols=47 Identities=13% Similarity=0.171 Sum_probs=41.7
Q ss_pred HHhhcccCcccceEEEcccccceEEEECCCCcccccceeeeccCCCccEEec
Q psy4856 600 LFFRRKSITEEEVARRTDLRHLDVCSVDPPGCTDIDDALHCRPLPNGNIEVT 651 (654)
Q Consensus 600 ~~l~~~~g~~~~~~~i~~~~~~g~~~v~~~~~~~~eg~vh~~~~~~~~~~~~ 651 (654)
.+++.+.|+.+. |.|+.+.++|+| |+.. +++|+||+|.+.+++++|+
T Consensus 75 i~~~~~~Gev~~-G~V~~v~~~G~f-V~l~---~~eglvhis~l~~~~~~~d 121 (187)
T 1go3_E 75 LVYIPEMYELIE-GEVVDVVEFGSF-VRLG---PLDGLIHVSQIMDDYVSYD 121 (187)
T ss_dssp EEECCCTTCEEE-EEEEEEETTEEE-EECS---SSEEEEEGGGSCSSCEEEC
T ss_pred EEEccCCCCEEE-EEEEEEeCcEEE-EEEc---CccEEEEhHHhCCCcceEC
Confidence 357789999999 999999999999 8664 3799999999999999875
No 20
>2cqo_A Nucleolar protein of 40 kDa; S1 domain, OB-fold, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=95.71 E-value=0.0036 Score=56.29 Aligned_cols=43 Identities=12% Similarity=0.181 Sum_probs=36.2
Q ss_pred hcccCcccceEEEcccccceEEEECCCCcccccceeeeccCCCccE
Q psy4856 603 RRKSITEEEVARRTDLRHLDVCSVDPPGCTDIDDALHCRPLPNGNI 648 (654)
Q Consensus 603 ~~~~g~~~~~~~i~~~~~~g~~~v~~~~~~~~eg~vh~~~~~~~~~ 648 (654)
..++|+.+. |.|+++.+||.| |++++. .++|+||+|.++++++
T Consensus 19 ~~~vG~iv~-G~V~~I~~fGaF-V~l~g~-~~~Glvhisel~~~~~ 61 (119)
T 2cqo_A 19 LPALYTIFQ-GEVAMVTDYGAF-IKIPGC-RKQGLVHRTHMSSCRV 61 (119)
T ss_dssp SCCTTCEEE-EEEEEEETTEEE-EECTTC-SSCEEEEHHHHCSSCC
T ss_pred ccCCCCEEE-EEEEEEeCceEE-EEECCC-cEEEEEEHHHCCcccc
Confidence 346799999 999999999999 878654 3799999999988764
No 21
>2k52_A Uncharacterized protein MJ1198; metal-binding, zinc, zinc-finger, structural genomics, PSI-2, protein structure initiative; NMR {Methanocaldococcus jannaschii}
Probab=95.48 E-value=0.0034 Score=52.21 Aligned_cols=42 Identities=7% Similarity=-0.002 Sum_probs=35.0
Q ss_pred hhcccCcccceEEEcccccceEEEECCCCcccccceeeeccCCCcc
Q psy4856 602 FRRKSITEEEVARRTDLRHLDVCSVDPPGCTDIDDALHCRPLPNGN 647 (654)
Q Consensus 602 l~~~~g~~~~~~~i~~~~~~g~~~v~~~~~~~~eg~vh~~~~~~~~ 647 (654)
|+-+.|+.+. |.|+++.+||.| |+..+ .++|+||+|.+.+++
T Consensus 1 m~~~~G~iv~-G~V~~v~~~G~f-V~l~~--~~~Gllh~sel~~~~ 42 (80)
T 2k52_A 1 MDVEPGKFYK-GVVTRIEKYGAF-INLNE--QVRGLLRPRDMISLR 42 (80)
T ss_dssp CCCCTTCEEE-EEEEEEETTEEE-EEEET--TEEEEECGGGCSSCC
T ss_pred CCCCCCCEEE-EEEEEEeCCEEE-EEECC--CCEEEEEHHHCCccc
Confidence 3457899999 999999999999 76653 489999999998754
No 22
>2k4k_A GSP13, general stress protein 13; cytoplasm, stress response, RNA binding protein; NMR {Bacillus subtilis}
Probab=95.15 E-value=0.0065 Score=55.44 Aligned_cols=40 Identities=13% Similarity=0.146 Sum_probs=34.2
Q ss_pred ccCcccceEEEcccccceEEEECCCCcccccceeeeccCCCccE
Q psy4856 605 KSITEEEVARRTDLRHLDVCSVDPPGCTDIDDALHCRPLPNGNI 648 (654)
Q Consensus 605 ~~g~~~~~~~i~~~~~~g~~~v~~~~~~~~eg~vh~~~~~~~~~ 648 (654)
++|+.+. |.|+++.+||+| |+..+ .++|+||+|.+.++++
T Consensus 6 ~vG~iv~-G~V~~i~~~G~F-V~l~~--~~~Glihisel~~~~~ 45 (130)
T 2k4k_A 6 EVGSVYT-GKVTGLQAYGAF-VALDE--ETQGLVHISEVTHGFV 45 (130)
T ss_dssp CTTCEEE-EEEEEEETTEEE-EEEET--TEEEEEEGGGTSSSCC
T ss_pred CCCCEEE-EEEEEEeCCeEE-EEECC--CcEEEEEHHHCCcccc
Confidence 5788998 999999999999 76643 4899999999998764
No 23
>1e3p_A Guanosine pentaphosphate synthetase; polyribonucleotide transferase, ATP-GTP diphosphotransferase RNA processing, RNA degradation; 2.5A {Streptomyces antibioticus} SCOP: a.4.9.1 b.40.4.5 d.14.1.4 d.14.1.4 d.52.3.1 d.101.1.1 d.101.1.1 PDB: 1e3h_A
Probab=94.73 E-value=0.0025 Score=74.06 Aligned_cols=43 Identities=9% Similarity=-0.018 Sum_probs=18.6
Q ss_pred hhcccCcccceEEEcccccceEEEECCCCcccccceeeeccC----CCccE
Q psy4856 602 FRRKSITEEEVARRTDLRHLDVCSVDPPGCTDIDDALHCRPL----PNGNI 648 (654)
Q Consensus 602 l~~~~g~~~~~~~i~~~~~~g~~~v~~~~~~~~eg~vh~~~~----~~~~~ 648 (654)
.+-++|+.+. |.|+.+.+||.| |+..+ .++||||+|.+ +++++
T Consensus 663 ~~~~vG~i~~-G~V~~i~~fGaF-V~l~~--g~eGLvHiSel~~~~s~~rv 709 (757)
T 1e3p_A 663 TSPEVGERIL-GSVVKTTTFGAF-VSLLP--GKDGLLHISQIRKLAGGKRV 709 (757)
T ss_dssp -----------CBEEECC-CSCE-ECCC-----CCCCC-------------
T ss_pred hhcccccEEE-EEEEEccccEEE-EEEcC--CcEEEEEhHHhccccCCCcc
Confidence 4567899999 999999999999 87753 58999999999 77665
No 24
>2khj_A 30S ribosomal protein S1; OB fold, acetylation, phosphoprotein, ribonucleoprotein, RNA-binding; NMR {Escherichia coli}
Probab=94.54 E-value=0.018 Score=50.67 Aligned_cols=52 Identities=8% Similarity=0.066 Sum_probs=39.6
Q ss_pred HHHHHHHHHhhcccCcccceEEEcccccceEEEECCCCcccccceeeeccCCCccE
Q psy4856 593 SVALHTHLFFRRKSITEEEVARRTDLRHLDVCSVDPPGCTDIDDALHCRPLPNGNI 648 (654)
Q Consensus 593 ~~~l~~~~~l~~~~g~~~~~~~i~~~~~~g~~~v~~~~~~~~eg~vh~~~~~~~~~ 648 (654)
..+.|......-+.|+.+. |.|+.+.++|+| |+..+ .++|+||+|.++++++
T Consensus 18 ~~~p~~~~~~~~~~G~iv~-G~V~~v~~~G~f-V~l~~--~~~Gll~~sel~~~~~ 69 (109)
T 2khj_A 18 GSHMFNNWVALNKKGAIVT-GKVTAVDAKGAT-VELAD--GVEGYLRASEASRDRV 69 (109)
T ss_dssp ---CHHHHTTTCCSSSEEE-EEEEEECSSCEE-EECST--TCBCCBCTTCCCSSSS
T ss_pred ccCHHHHHhhcCCCCCEEE-EEEEEEECCeEE-EEECC--CCEEEEEHHHcCcccc
Confidence 3344554445667899999 999999999999 76653 5899999999987653
No 25
>2khi_A 30S ribosomal protein S1; acetylation, phosphoprotein, ribonucleoprotein, RNA-binding; NMR {Escherichia coli}
Probab=94.16 E-value=0.025 Score=50.24 Aligned_cols=39 Identities=18% Similarity=0.197 Sum_probs=33.5
Q ss_pred hcccCcccceEEEcccccceEEEECCCCcccccceeeeccCCC
Q psy4856 603 RRKSITEEEVARRTDLRHLDVCSVDPPGCTDIDDALHCRPLPN 645 (654)
Q Consensus 603 ~~~~g~~~~~~~i~~~~~~g~~~v~~~~~~~~eg~vh~~~~~~ 645 (654)
+-+.|+.+. |.|+++.+||+| |+..+ .++|+||+|.++.
T Consensus 27 ~~~~G~~~~-G~V~~v~~~G~F-V~l~~--~~~Glvhisel~~ 65 (115)
T 2khi_A 27 RYPEGTKLT-GRVTNLTDYGCF-VEIEE--GVEGLVHVSEMDW 65 (115)
T ss_dssp SSCSSCEEE-EEEEEEETTEEE-EECST--TCEEEEETTSSSC
T ss_pred cCCCCCEEE-EEEEEEECCEEE-EEECC--CCEEEEEHHHCCc
Confidence 456899999 999999999999 76653 5899999999975
No 26
>4aid_A Polyribonucleotide nucleotidyltransferase; transferase-peptide complex; 2.60A {Caulobacter vibrioides} PDB: 4aim_A 4am3_A
Probab=92.90 E-value=0.024 Score=65.45 Aligned_cols=44 Identities=11% Similarity=0.112 Sum_probs=0.0
Q ss_pred hhcccCcccceEEEcccccceEEEECCCCcccccceeeeccCCCccEE
Q psy4856 602 FRRKSITEEEVARRTDLRHLDVCSVDPPGCTDIDDALHCRPLPNGNIE 649 (654)
Q Consensus 602 l~~~~g~~~~~~~i~~~~~~g~~~v~~~~~~~~eg~vh~~~~~~~~~~ 649 (654)
.+-++|+.+. |.|+++.+||.| |+..+ .++||||+|.+++++++
T Consensus 633 ~~~~vG~v~~-G~V~~I~~fGaF-Vel~~--g~eGLvHiSels~~rv~ 676 (726)
T 4aid_A 633 DEAEVGKIYD-GKVVKVVDFGAF-VNFFG--AKDGLVHVSQISNERVA 676 (726)
T ss_dssp ------------------------------------------------
T ss_pred hhhcCCcEEE-EEEEEEeccEEE-EEECC--CcEEEEEHHHcCccccc
Confidence 4568899999 999999999999 87753 58999999999988764
No 27
>2bh8_A 1B11; transcription, molecular evolution, unique architecture, transcription regulation, phosphorylation; 1.9A {Escherichia coli}
Probab=91.17 E-value=0.077 Score=46.10 Aligned_cols=38 Identities=13% Similarity=0.248 Sum_probs=32.2
Q ss_pred ccCcccceEEEcccccceEEEECCCCcccccceeeeccCCCc
Q psy4856 605 KSITEEEVARRTDLRHLDVCSVDPPGCTDIDDALHCRPLPNG 646 (654)
Q Consensus 605 ~~g~~~~~~~i~~~~~~g~~~v~~~~~~~~eg~vh~~~~~~~ 646 (654)
..|+... +.|+.+.+||.| |+..+ .+|||||+|.++..
T Consensus 60 ~~Ge~V~-g~V~~i~~fG~f-v~l~~--~~eGlvhis~i~~~ 97 (101)
T 2bh8_A 60 QQGDRVE-GKIKSITDFGIF-IGLDG--GIDGLVHLSDISWA 97 (101)
T ss_dssp CTTCEEE-EEEEECCSEEEE-ECTTS--CEEEEEEEEEEEEC
T ss_pred CCCCEEE-EEEEEeCCcEEE-EEcCC--CceEEEEHHHCccC
Confidence 5788888 999999999999 87754 48999999998744
No 28
>3cdi_A Polynucleotide phosphorylase; mRNA turnover, RNAse, RNA degradation, kinase, transferase; 2.60A {Escherichia coli} PDB: 1sro_A
Probab=89.83 E-value=0.061 Score=62.31 Aligned_cols=46 Identities=9% Similarity=0.093 Sum_probs=0.0
Q ss_pred HHHhhcccCcccceEEEcccccceEEEECCCCcccccceeeeccCCCccE
Q psy4856 599 HLFFRRKSITEEEVARRTDLRHLDVCSVDPPGCTDIDDALHCRPLPNGNI 648 (654)
Q Consensus 599 ~~~l~~~~g~~~~~~~i~~~~~~g~~~v~~~~~~~~eg~vh~~~~~~~~~ 648 (654)
....+.++|+.+. |.|+.+.+||.| |+..+ .++||||+|.++++++
T Consensus 620 ~i~~~~~vG~i~~-G~V~~i~~fGaF-Vel~~--g~eGLvHiSel~~~~v 665 (723)
T 3cdi_A 620 EITAEIEVGRVYT-GKVTRIVDFGAF-VAIGG--GKEGLVHISQIADKRV 665 (723)
T ss_dssp --------------------------------------------------
T ss_pred HHhhhhhcCcEEE-EEEEEEecceEE-EEeCC--CceEEEEHHHcCCccc
Confidence 3446778999999 999999999999 77643 4899999999998765
No 29
>1wi5_A RRP5 protein homolog; S1 domain, OB-fold, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: b.40.4.5
Probab=89.10 E-value=0.058 Score=48.10 Aligned_cols=43 Identities=14% Similarity=-0.065 Sum_probs=31.7
Q ss_pred ccCcccceEEEcccccceEEEECCCCcccccceeeeccCCCccEEec
Q psy4856 605 KSITEEEVARRTDLRHLDVCSVDPPGCTDIDDALHCRPLPNGNIEVT 651 (654)
Q Consensus 605 ~~g~~~~~~~i~~~~~~g~~~v~~~~~~~~eg~vh~~~~~~~~~~~~ 651 (654)
+.|+.+. |.|+++.+||.| |+.. ...+ |++|.++..++||+|.
T Consensus 20 ~~G~i~~-G~V~~v~~fG~f-V~l~-~~~~-~~l~~~~~~~~~~~~~ 62 (119)
T 1wi5_A 20 KPGMLLT-GTVSSLEDHGYL-VDIG-VDGT-RAFLPLLKAQEYIRQK 62 (119)
T ss_dssp CTTCEEE-EEEEEECSSEEE-EECC-CSSC-EEEEEHHHHHHHHHHH
T ss_pred CCCCEEE-EEEEEEeCceEE-EEEC-CCCe-EEEEEEeccccccccc
Confidence 5799999 999999999999 8765 2234 4566666656676553
No 30
>3psf_A Transcription elongation factor SPT6; nucleus; 2.59A {Saccharomyces cerevisiae}
Probab=88.44 E-value=0.078 Score=63.54 Aligned_cols=44 Identities=7% Similarity=0.061 Sum_probs=0.4
Q ss_pred Hhhc-ccCcccceEEEcccccceEEEECCCCcccccceeeeccCCCccE
Q psy4856 601 FFRR-KSITEEEVARRTDLRHLDVCSVDPPGCTDIDDALHCRPLPNGNI 648 (654)
Q Consensus 601 ~l~~-~~g~~~~~~~i~~~~~~g~~~v~~~~~~~~eg~vh~~~~~~~~~ 648 (654)
.++. ++|..+. |.|+++.+||.| |+.. . .++||||+|.+++++|
T Consensus 899 t~~~l~~G~iv~-G~V~~V~~fGaF-V~L~-~-gveGLVHiSelsd~~~ 943 (1030)
T 3psf_A 899 SEKTFFKGSIIP-VRVERFWHNDII-CTTN-S-EVECVVNAQRHAGAQL 943 (1030)
T ss_dssp C------------------------------------------------
T ss_pred cHHHhcCCCEEE-EEEEEEccCeEE-EEeC-C-CcEEEEEHHHcCCCcc
Confidence 3344 5789998 999999999999 7653 3 4899999999999875
No 31
>3psi_A Transcription elongation factor SPT6; nucleus; 3.30A {Saccharomyces cerevisiae}
Probab=88.30 E-value=0.18 Score=61.49 Aligned_cols=40 Identities=8% Similarity=0.102 Sum_probs=34.5
Q ss_pred ccCcccceEEEcccccceEEEECCCCcccccceeeeccCCCccE
Q psy4856 605 KSITEEEVARRTDLRHLDVCSVDPPGCTDIDDALHCRPLPNGNI 648 (654)
Q Consensus 605 ~~g~~~~~~~i~~~~~~g~~~v~~~~~~~~eg~vh~~~~~~~~~ 648 (654)
++|..+. |.|+++.+||.| |+.. . .++|+||+|.+++++|
T Consensus 901 ~~G~iv~-G~V~~V~~fGaF-V~L~-~-gveGLVHiSelsd~~~ 940 (1219)
T 3psi_A 901 FKGSIIP-VRVERFWHNDII-CTTN-S-EVECVVNAQRHAGAQL 940 (1219)
T ss_dssp CTTCEEE-EEEEEECSSCEE-EECT-T-SCEEEECTTSSSSTTS
T ss_pred CCCCEEE-EEEEEEecceEE-EEeC-C-CceEEEEHHHcCCCcc
Confidence 4788998 999999999999 7553 3 4899999999999875
No 32
>3k2z_A LEXA repressor; winged helix-turn-helix, SOS system, autoca cleavage, DNA damage, DNA repair, DNA replication, DNA-BIND hydrolase; 1.37A {Thermotoga maritima}
Probab=80.72 E-value=4.9 Score=38.34 Aligned_cols=67 Identities=21% Similarity=0.260 Sum_probs=47.8
Q ss_pred eEecCCCCCC--cCCCCCEEEEEEccCCCcCCccccccccCCCCCCccccccccccCCCCCCCCCCCCceeEEEEEeecC
Q psy4856 161 ILVQGREGLN--RAIDGDTVAVRLLPESQWSAPLELVLEDEGSGEDEEGEDGKLIKGNKTVPPAERRPTGQIVGIIKRKW 238 (654)
Q Consensus 161 I~I~g~~~~N--RAl~GD~V~Vellp~~~w~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ptGkVVgIi~R~~ 238 (654)
+.|.|. .|. .-.+||+|+|.--.. -..|.||-+....
T Consensus 112 l~v~Gd-SM~~p~i~~GD~viv~~~~~---------------------------------------~~~G~ivv~~~~~- 150 (196)
T 3k2z_A 112 LKVKGE-SMIEEHICDGDLVLVRRQDW---------------------------------------AQNGDIVAAMVDG- 150 (196)
T ss_dssp EECCSS-TTGGGTCCTTCEEEEEECSC---------------------------------------CCTTCEEEEEETT-
T ss_pred EEEeCC-CcCCCCCCCCCEEEEeccCc---------------------------------------CCCCCEEEEEECC-
Confidence 446675 784 678999999974211 1357777766544
Q ss_pred ceeeeeecCCCCCCCceEEEEeCCCCCCcEEEcc
Q psy4856 239 RQYCGILQPNPLAGSSRHLFVPAERKIPKIRVET 272 (654)
Q Consensus 239 r~~vG~l~~~~~~~~~~~l~vP~D~riP~I~I~t 272 (654)
..+|..+... .+.+++.|.|++.|.|.|+.
T Consensus 151 ~~~vKr~~~~----~~~~~L~~~N~~y~~i~i~~ 180 (196)
T 3k2z_A 151 EVTLAKFYQR----GDTVELRPANREMSSMFFRA 180 (196)
T ss_dssp EEEEEEEEEE----TTEEEEECSCTTSCCEEEEG
T ss_pred cEEEEEEEEE----CCEEEEEECCCCCCCEEecC
Confidence 5577887654 46788999999999998873
No 33
>2yty_A Cold shock domain-containing protein E1; cell-free protein synthesis, beta-barrel, translational REGU RNA chaperone, RNA/DNA binding, QB fold; NMR {Homo sapiens}
Probab=75.21 E-value=4.7 Score=33.94 Aligned_cols=51 Identities=25% Similarity=0.304 Sum_probs=39.8
Q ss_pred cCCeEEEEEEEecCCCceeEEeecCCCcCeEecCCCCCCc----CCCCCEEEEEEccC
Q psy4856 132 NQSLLQGSFQASRENFLEGQVNCEGYDKPILVQGREGLNR----AIDGDTVAVRLLPE 185 (654)
Q Consensus 132 ~g~l~~G~l~v~~~n~~egfV~~~~~~~dI~I~g~~~~NR----Al~GD~V~Vellp~ 185 (654)
++.-.+|++.--.++| ||+.+++.++|||+.=. ++.+ --.||.|..++...
T Consensus 15 ~~~~~~G~Vk~f~kGf--GFI~~ddgg~DvFvH~S-~i~~~~~~L~~G~~V~F~~~~g 69 (88)
T 2yty_A 15 NSKRLLGYVATLKDNF--GFIETANHDKEIFFHYS-EFSGDVDSLELGDMVEYSLSKG 69 (88)
T ss_dssp SCCCEEEEEEEECSSE--EEEECSSSSCEEEEETT-TCCSCTTTCCTTCEEEECCCCC
T ss_pred CCCceeEEEEEEECCc--cEEecCCCCceEEEEEh-hhccccCcCCCCCEEEEEEEEC
Confidence 3567899988877899 99999987799999865 5543 34799999887543
No 34
>1wfq_A UNR protein; beta-barrel, translational regulation, RNA chaperone, RNA/DN binding, QB fold, greek-KEY topology, structur genomics; NMR {Homo sapiens} SCOP: b.40.4.5
Probab=74.94 E-value=5.8 Score=33.46 Aligned_cols=52 Identities=13% Similarity=0.237 Sum_probs=39.8
Q ss_pred hcCCeEEEEEEEecCCCceeEEeecCCCcCeEecCCCCCC----cCCCCCEEEEEEccC
Q psy4856 131 KNQSLLQGSFQASRENFLEGQVNCEGYDKPILVQGREGLN----RAIDGDTVAVRLLPE 185 (654)
Q Consensus 131 k~g~l~~G~l~v~~~n~~egfV~~~~~~~dI~I~g~~~~N----RAl~GD~V~Vellp~ 185 (654)
+.....+|++.--.++| ||+.+++.++|||+.-. ++. +--.||.|..++...
T Consensus 14 s~~~~~~G~Vkwf~KGf--GFI~~ddgg~DVFvH~s-~i~~~~~~L~~G~~V~F~v~~~ 69 (89)
T 1wfq_A 14 SAALRETGVIEKLLTSY--GFIQCSERQARLFFHCS-QYNGNLQDLKVGDDVEFEVSSD 69 (89)
T ss_dssp SCCCEEEEEEEEECSSE--EEEEETTTTEEEEEETT-TCSSCTTTCCTTCCEEEEEEEC
T ss_pred CcccccceEEEEEeCCe--eEEecCCCCccEEEEhH-HhhCccCCCCCCCEEEEEEEEC
Confidence 33457789887766888 99999987789999876 443 345799999998654
No 35
>2id0_A Exoribonuclease 2; RNAse, exonuclease, hydrolyase, mRNA decay, RNR family, hydrolase; 2.35A {Escherichia coli} SCOP: b.40.4.5 b.40.4.5 b.40.4.5 b.40.4.16 PDB: 2ix0_A* 2ix1_A
Probab=73.21 E-value=4.5 Score=46.20 Aligned_cols=60 Identities=13% Similarity=0.194 Sum_probs=45.1
Q ss_pred eeeeecCCCCCCCceEEEEeCCCCCCcEEEcccccc-ccCCCEEEEEEeecCCCCCCccEEEEEecCCC
Q psy4856 241 YCGILQPNPLAGSSRHLFVPAERKIPKIRVETRQIA-TLSGQRIVVAIDSWPRHSRYPQGHFVRALGPI 308 (654)
Q Consensus 241 ~vG~l~~~~~~~~~~~l~vP~D~riP~I~I~t~q~~-~l~~~rvvV~Id~Wp~~s~~P~Ghiv~~LG~~ 308 (654)
+.|++.-.+ ++++|++|.+. ..|+|+.++.. ++.|++|+|+|..- ...|+|+|+++|...
T Consensus 22 ~~G~~~~~~---~GfgF~~~d~~--~difi~~~~~~~a~~GD~V~v~i~~~---~~~~eg~v~~iler~ 82 (644)
T 2id0_A 22 AEGVVKATE---KGFGFLEVDAQ--KSYFIPPPQMKKVMHGDRIIAVIHSE---KERESAEPEELVEPF 82 (644)
T ss_dssp EEEEEECCS---SSCEEEECSSS--CEEEECHHHHTTSCTTCEEEEEEECC---SSSCEEEEEEEEECS
T ss_pred EEEEEEEec---CCcEEEEECCC--CCEEECHHHHhcCCCCCEEEEEEecC---CCCeEEEEEEEEecC
Confidence 345555432 57899999763 68999988765 57999999999853 235899999999764
No 36
>3go5_A Multidomain protein with S1 RNA-binding domains; structural genomics, joint center for structural genomics, JCSG; HET: MSE; 1.40A {Streptococcus pneumoniae}
Probab=68.96 E-value=2.2 Score=43.82 Aligned_cols=46 Identities=15% Similarity=0.061 Sum_probs=32.7
Q ss_pred CCeEEEEEEEecCCCceeEEeecCCCcCeEecCCCCCCcCCCCCEEEEEEcc
Q psy4856 133 QSLLQGSFQASRENFLEGQVNCEGYDKPILVQGREGLNRAIDGDTVAVRLLP 184 (654)
Q Consensus 133 g~l~~G~l~v~~~n~~egfV~~~~~~~dI~I~g~~~~NRAl~GD~V~Vellp 184 (654)
|+.++|++.--... .+||..+ +.+++++-. .+-. --||.|-|.++.
T Consensus 7 G~~v~g~V~~~~~~--G~fv~~~--g~egllp~s-e~~~-~vGdevev~v~~ 52 (285)
T 3go5_A 7 ASFIVGLIIDENDR--FYFVQKD--GQTYALAKE-EGQH-TVGDTVKGFAYT 52 (285)
T ss_dssp TEEEEEEEEEECSS--EEEEEET--TEEEEEEGG-GCCC-CTTSEEEEEEEE
T ss_pred CCEEEEEEEEEECC--EEEEEcC--CeEEEEEHH-HCcc-ccCCEEEEEEEE
Confidence 88999976433222 2788774 568999886 4433 789999999874
No 37
>3m7n_A Putative uncharacterized protein AF_0206; exosome, RNA, exonuclease, hydrolase, nuclease, hydrolase-RN; 2.40A {Archaeoglobus fulgidus} PDB: 2ba1_A 3m85_A
Probab=66.37 E-value=2 Score=40.90 Aligned_cols=39 Identities=18% Similarity=0.077 Sum_probs=31.3
Q ss_pred CcccceEEEcccccceEEEECCCCc--------ccccceeeeccCCCcc
Q psy4856 607 ITEEEVARRTDLRHLDVCSVDPPGC--------TDIDDALHCRPLPNGN 647 (654)
Q Consensus 607 g~~~~~~~i~~~~~~g~~~v~~~~~--------~~~eg~vh~~~~~~~~ 647 (654)
|.... |.|++++++|.| |++... ...+|+||+|.+.+++
T Consensus 58 GdiV~-G~V~~V~~~ga~-V~I~~v~~~~~~~~~~~~Gll~isei~~~~ 104 (179)
T 3m7n_A 58 GDVVL-GRVVDLRNSIAL-IEVSSKKGENRGPSNRGIGILHVSNVDEGY 104 (179)
T ss_dssp TCEEE-EEEEEECSSEEE-EEEEEETTCCSCCTTCEEEEEEGGGTTSSC
T ss_pred CCEEE-EEEEEEeCCcEE-EEEccccCcccccccCeeEEEEHHHcCcch
Confidence 77777 999999999999 765431 1579999999998764
No 38
>2ytv_A Cold shock domain-containing protein E1; cell-free protein synthesis, beta-barrel, translational REGU RNA chaperone, RNA/DNA binding, QB fold; NMR {Homo sapiens}
Probab=66.31 E-value=6.3 Score=32.44 Aligned_cols=49 Identities=18% Similarity=0.354 Sum_probs=38.0
Q ss_pred CeEEEEEEEecCCCceeEEeecCC-CcCeEecCCCCCC---cCCCCCEEEEEEccC
Q psy4856 134 SLLQGSFQASRENFLEGQVNCEGY-DKPILVQGREGLN---RAIDGDTVAVRLLPE 185 (654)
Q Consensus 134 ~l~~G~l~v~~~n~~egfV~~~~~-~~dI~I~g~~~~N---RAl~GD~V~Vellp~ 185 (654)
...+|++..-.++| ||+..++. ++|||+.=. ++. +--.||.|..++...
T Consensus 7 ~~~~G~V~~~~KGf--GFI~~ddg~g~DvFvH~s-~i~~g~~l~~G~~V~F~v~~~ 59 (79)
T 2ytv_A 7 GLRRATVECVKDQF--GFINYEVGDSKKLFFHVK-EVQDGIELQAGDEVEFSVILN 59 (79)
T ss_dssp SBCCEEEEECCSSE--EEESCCCSSSSSEEEETT-TCCSSCCCCTTCEEECBCEEC
T ss_pred CcccEEEEEecccc--eeEeCCCCCCCcEEEEhH-HcCCCCcCCCCCEEEEEEEEC
Confidence 46789998888999 99999876 589998875 332 345799999887544
No 39
>2ytx_A Cold shock domain-containing protein E1; cell-free protein synthesis, beta-barrel, translational REGU RNA chaperone, RNA/DNA binding, QB fold; NMR {Homo sapiens}
Probab=60.05 E-value=16 Score=31.18 Aligned_cols=49 Identities=24% Similarity=0.271 Sum_probs=38.5
Q ss_pred CCeEEEEEEEecCCCceeEEeecCCCcCeEecCCCCCC----cCCCCCEEEEEEcc
Q psy4856 133 QSLLQGSFQASRENFLEGQVNCEGYDKPILVQGREGLN----RAIDGDTVAVRLLP 184 (654)
Q Consensus 133 g~l~~G~l~v~~~n~~egfV~~~~~~~dI~I~g~~~~N----RAl~GD~V~Vellp 184 (654)
....+|++.--.++| ||+..++.++|||+.=. ++. +--.||.|..++..
T Consensus 16 ~~~~~G~Vkwf~KGf--GFI~~ddg~~DvFvH~s-~i~~~~~~L~~G~~V~F~v~~ 68 (97)
T 2ytx_A 16 QARCQGVVCAMKEAF--GFIERGDVVKEIFFHYS-EFKGDLETLQPGDDVEFTIKD 68 (97)
T ss_dssp CCCEEEEECCCCSSE--EEEECSSSCCCEEEETT-TCCSCTTSCCSCCEEEEEECC
T ss_pred CcceeEEEEEEeCCc--eEEecCCCCceEEEEeh-HhccccCCCCCCCEEEEEEEc
Confidence 456789887667889 99999887789999876 443 34579999999854
No 40
>2nn6_I 3'-5' exoribonuclease CSL4 homolog; RNA, exosome, PM/SCL, phosphorolytic, hydrolase/transferase complex; 3.35A {Homo sapiens} SCOP: b.40.4.5 b.84.4.2
Probab=59.64 E-value=3.6 Score=40.23 Aligned_cols=41 Identities=2% Similarity=-0.129 Sum_probs=31.6
Q ss_pred cccCcccceEEEcccccceEEEECCCCc------ccccceeeeccCCCc
Q psy4856 604 RKSITEEEVARRTDLRHLDVCSVDPPGC------TDIDDALHCRPLPNG 646 (654)
Q Consensus 604 ~~~g~~~~~~~i~~~~~~g~~~v~~~~~------~~~eg~vh~~~~~~~ 646 (654)
-+.|.... |.|++++++|.| |++.+. ...+|+||+|.+.+.
T Consensus 79 p~vGDvV~-G~V~~v~~~~a~-V~I~~v~~~~L~~~~~GlIhisei~~~ 125 (209)
T 2nn6_I 79 PDVGAIVT-CKVSSINSRFAK-VHILYVGSMPLKNSFRGTIRKEDVRAT 125 (209)
T ss_dssp CCTTCEEE-EEEEEECSSEEE-EEEEESSSSCCCCSSCSCEEEEGGGTC
T ss_pred CCCCCEEE-EEEEEEECceEE-EEECccccccccCCceeEEEHHHcccc
Confidence 45788887 999999999999 765321 357999999977654
No 41
>3i2z_B RNA chaperone, negative regulator of CSPA transcription; beta barrel, DNA binding protein/transcription, cytoplasm, gene regulation; 1.10A {Salmonella typhimurium} SCOP: b.40.4.5 PDB: 2l15_A 1mjc_A 3mef_A
Probab=59.37 E-value=21 Score=28.46 Aligned_cols=48 Identities=17% Similarity=0.281 Sum_probs=35.2
Q ss_pred eEEEEEEEe--cCCCceeEEeecCCCcCeEecCCCCCC-----cCCCCCEEEEEEccC
Q psy4856 135 LLQGSFQAS--RENFLEGQVNCEGYDKPILVQGREGLN-----RAIDGDTVAVRLLPE 185 (654)
Q Consensus 135 l~~G~l~v~--~~n~~egfV~~~~~~~dI~I~g~~~~N-----RAl~GD~V~Vellp~ 185 (654)
-.+|++.-- .++| ||+..++.++|||+.-. ++. .--.||.|..++...
T Consensus 5 ~~~G~Vk~fn~~kGf--GFI~~~~g~~dvFvH~s-~i~~~g~~~l~~G~~V~f~~~~~ 59 (71)
T 3i2z_B 5 KIKGNVKWFNESKGF--GFITPEDGSKDVFVHFS-AIQTNGFKTLAEGQRVEFEITNG 59 (71)
T ss_dssp CEEEEEEEEETTTTE--EEEEETTCCCCEEEEGG-GBCCSSCCCCCTTCEEEEEEEEE
T ss_pred cccEEEEEEECCCCc--EEEecCCCCccEEEEhH-HcccccCcCCCCCCEEEEEEEEC
Confidence 357877663 5678 99999987789998765 332 345899999988643
No 42
>3ix7_A Uncharacterized protein TTHA0540; unknown function, thermus thermophilus HB8, structural genom 2, protein structure initiative; HET: MSE; 2.15A {Thermus thermophilus}
Probab=59.03 E-value=13 Score=33.70 Aligned_cols=45 Identities=22% Similarity=0.178 Sum_probs=36.7
Q ss_pred hhHHHHHHHHHhHhhhhhhccCCeEEEEeCChhhHHHHhhcCcceeeHHHHHhhCC
Q psy4856 37 NDRALRRVATWYVKYEEHLESAVRVILLSEDVRNRDLATQSGLLTSSIEGYISTLS 92 (654)
Q Consensus 37 n~r~i~~aa~wY~~~~~Hl~~~~~vvllt~d~~~~~~a~~~gi~~~s~~~yv~~~~ 92 (654)
-|-.|++.|.=+ ..+++|||....+.|+..||.++.+.+....++
T Consensus 86 vD~~ll~lA~~~-----------~~~lvTnD~~L~kvA~~~GI~Vl~l~~l~~al~ 130 (134)
T 3ix7_A 86 VDEKLLFLARDL-----------EAALVTNDHALLQMARIYGVKALSIQALAQALR 130 (134)
T ss_dssp HHHHHHHHHHHT-----------TCEEEESCHHHHHHHHHTTCCEEEHHHHHHHTS
T ss_pred HHHHHHHHHHHh-----------CCEEEeCCHHHHHHHHHCCCeEEehHHHHHhhC
Confidence 356666666555 258999999999999999999999999988764
No 43
>3cam_A Cold-shock domain family protein; cold shock protein, chain SWAP, STRU genomics, oxford protein production facility, OPPF, gene RE; 2.60A {Neisseria meningitidis MC58}
Probab=58.64 E-value=20 Score=28.27 Aligned_cols=46 Identities=11% Similarity=0.217 Sum_probs=34.5
Q ss_pred EEEEEE--ecCCCceeEEeecCCCcCeEecCCCCC-----CcCCCCCEEEEEEccC
Q psy4856 137 QGSFQA--SRENFLEGQVNCEGYDKPILVQGREGL-----NRAIDGDTVAVRLLPE 185 (654)
Q Consensus 137 ~G~l~v--~~~n~~egfV~~~~~~~dI~I~g~~~~-----NRAl~GD~V~Vellp~ 185 (654)
+|++.- ..++| ||+..++.++|||+.-. ++ .+--.||.|..++...
T Consensus 3 ~G~Vk~fn~~kGf--GFI~~~~gg~dvFvH~s-~i~~~g~~~l~~G~~V~f~~~~~ 55 (67)
T 3cam_A 3 TGIVKWFNDAKGF--GFITPDEGGEDLFAHFS-AINMEGFKTLKEGQRVSFDVTTG 55 (67)
T ss_dssp EEEEEEEETTTTE--EEEEETTSCCCEEEEGG-GBCGGGGSSCCTTCEEEEEEEEE
T ss_pred CEEEEEEECCCCe--EEEecCCCCccEEEEHH-HccccCCCCCCCCCEEEEEEEEC
Confidence 566654 35688 99999987899998876 44 3456899999998643
No 44
>3aqq_A Calcium-regulated heat stable protein 1; compact beta-barrel, cold shock domain, ssDNA binding, DNA B protein; 2.80A {Homo sapiens}
Probab=58.64 E-value=14 Score=34.15 Aligned_cols=53 Identities=11% Similarity=0.229 Sum_probs=39.9
Q ss_pred hhhcCCeEEEEEEEe--cCCCceeEEeecCCCcCeEecCCCCCC---cCCCCCEEEEEEcc
Q psy4856 129 GIKNQSLLQGSFQAS--RENFLEGQVNCEGYDKPILVQGREGLN---RAIDGDTVAVRLLP 184 (654)
Q Consensus 129 gik~g~l~~G~l~v~--~~n~~egfV~~~~~~~dI~I~g~~~~N---RAl~GD~V~Vellp 184 (654)
.-..|...+|++.-- .+|| ||+..++.++|||+.-. ++. +--.||.|..++..
T Consensus 56 ~~~~g~m~~GtVKwFn~~KGf--GFI~~ddGg~DVFVH~S-ai~~~~~L~eGq~V~Fev~~ 113 (147)
T 3aqq_A 56 RASQGPVYKGVCKCFCRSKGH--GFITPADGGPDIFLHIS-DVEGEYVPVEGDEVTYKMCS 113 (147)
T ss_dssp HHHHSCCEEEEEEEEETTTTE--EEEEESSSCSCEEEEGG-GEESSBCCCTTCEEEEEEEE
T ss_pred ccccCCccceEEEEEeCCCCe--EEeccCCCCccEEEEee-eecCCCcCCCCCEEEEEEEe
Confidence 344577889998753 6788 99999987799998765 332 45689999988854
No 45
>2vnu_D Exosome complex exonuclease RRP44; hydrolase-RNA complex, RNA degradation, RNA-binding, RNA Pro; HET: 1PE; 2.30A {Saccharomyces cerevisiae} SCOP: b.40.4.5 b.40.4.5 b.40.4.5 b.40.4.16
Probab=53.32 E-value=14 Score=42.93 Aligned_cols=32 Identities=6% Similarity=0.161 Sum_probs=23.5
Q ss_pred EEEEeCCCCCCcEEEcc-ccc-cccCCCEEEEEEe
Q psy4856 256 HLFVPAERKIPKIRVET-RQI-ATLSGQRIVVAID 288 (654)
Q Consensus 256 ~l~vP~D~riP~I~I~t-~q~-~~l~~~rvvV~Id 288 (654)
+||.+.+. -..|+|+. .+. .++.|++|+|+|.
T Consensus 47 gfv~~~~~-~~di~I~~~~~~n~A~~GD~V~V~i~ 80 (760)
T 2vnu_D 47 GSVSLPRF-SKPVLIVGQKNLNRAFNGDQVIVELL 80 (760)
T ss_dssp EEECCSSS-SSCEEEESHHHHTTCCTTCEEEEEEC
T ss_pred EEEEcCCC-CCCEEEcChhhhccccCCCEEEEEEe
Confidence 66666543 24799987 554 4789999999996
No 46
>1h95_A CSD, Y-box binding protein; translation factor, transcription factor, OB-fold, 5- stranded anti-parallel beta-barrel, single stranded DNA binding; NMR {Homo sapiens} SCOP: b.40.4.5
Probab=52.77 E-value=17 Score=29.67 Aligned_cols=48 Identities=19% Similarity=0.378 Sum_probs=35.8
Q ss_pred eEEEEEEEe--cCCCceeEEeecCCCcCeEecCCCCCCc---------CCCCCEEEEEEccC
Q psy4856 135 LLQGSFQAS--RENFLEGQVNCEGYDKPILVQGREGLNR---------AIDGDTVAVRLLPE 185 (654)
Q Consensus 135 l~~G~l~v~--~~n~~egfV~~~~~~~dI~I~g~~~~NR---------Al~GD~V~Vellp~ 185 (654)
..+|++.-- .++| ||+..++.++|||+.-. ++.+ --.||.|..++...
T Consensus 8 ~~~G~Vkwfn~~kGf--GFI~~~~gg~DvFvH~s-~i~~~~~~~g~~~l~~G~~V~f~~~~~ 66 (79)
T 1h95_A 8 KVLGTVKWFNVRNGY--GFINRNDTKEDVFVHQT-AIKKNNPRKYLRSVGDGETVEFDVVEG 66 (79)
T ss_dssp EEEEEEEEEETTTTE--EEEEEGGGTEEEEEEGG-GBCSCCCSCCSCSCCSSCEEEEEEEEC
T ss_pred ccceEEEEEECCCCc--EEEecCCCCccEEEEhH-HccccccccccccCCCCCEEEEEEEEC
Confidence 467887653 5678 99999887789998876 4432 23799999998654
No 47
>3go5_A Multidomain protein with S1 RNA-binding domains; structural genomics, joint center for structural genomics, JCSG; HET: MSE; 1.40A {Streptococcus pneumoniae}
Probab=52.51 E-value=8.4 Score=39.41 Aligned_cols=38 Identities=29% Similarity=0.302 Sum_probs=30.3
Q ss_pred ccCcccceEEEcccc-cceEEEECCCCcccccceeeeccCCC
Q psy4856 605 KSITEEEVARRTDLR-HLDVCSVDPPGCTDIDDALHCRPLPN 645 (654)
Q Consensus 605 ~~g~~~~~~~i~~~~-~~g~~~v~~~~~~~~eg~vh~~~~~~ 645 (654)
..|+... |.|+.++ .||.| |+. |...++|+||+|.++-
T Consensus 68 ~~G~~~~-g~V~~v~~~~GaF-Vdi-G~~~~d~lvp~sel~~ 106 (285)
T 3go5_A 68 TQDQFGW-GRVTEVRKDLGVF-VDT-GLPDKEIVVSLDILPE 106 (285)
T ss_dssp CSSSCEE-EEEEEEETTTEEE-EEC-SCTTCCEEEEGGGSCS
T ss_pred cCCCEEE-EEEEEEccCceEE-EEE-CCCCcEEEEEHHHCCc
Confidence 4677777 9999998 79999 865 4424899999998853
No 48
>1x65_A UNR protein; cell-free protein synthesis, beta-barrel, translational REGU RNA chaperone, RNA/DNA binding, QB fold, greek-KEY topology protein; NMR {Homo sapiens}
Probab=51.21 E-value=17 Score=30.58 Aligned_cols=49 Identities=20% Similarity=0.345 Sum_probs=37.5
Q ss_pred CeEEEEEEEecCCCceeEEeecCCCcCeEecCCCCCC---cCCCCCEEEEEEccC
Q psy4856 134 SLLQGSFQASRENFLEGQVNCEGYDKPILVQGREGLN---RAIDGDTVAVRLLPE 185 (654)
Q Consensus 134 ~l~~G~l~v~~~n~~egfV~~~~~~~dI~I~g~~~~N---RAl~GD~V~Vellp~ 185 (654)
...+|++.--.++| ||+.+++.++|||+.=. ++. +--.||.|..++...
T Consensus 7 ~r~~G~Vk~f~KGf--GFI~~~~gg~DvFvH~s-~i~~~~~L~~G~~V~F~v~~g 58 (89)
T 1x65_A 7 GREMGVIAAMRDGF--GFIKCVDRDVRMFFHFS-EILDGNQLHIADEVEFTVVPD 58 (89)
T ss_dssp CCEEEEEEECCTTB--CEEEESSSSSCCCCBTT-GGGGSCCCCTTCCEEECCBCC
T ss_pred cceeEEEEEEeCCc--ceeecCCCCccEEEEhh-hccCCCCCCCCCEEEEEEEeC
Confidence 35789988777999 99999887789998876 443 334689998887543
No 49
>2je6_I RRP4, exosome complex RNA-binding protein 1; nuclease, hydrolase, exonuclease, phosphorolytic, exoribonuclease, RNA degradation; HET: 1PE; 1.6A {Sulfolobus solfataricus} SCOP: b.40.4.5 b.84.4.2 d.51.1.1 PDB: 2jea_I* 2jeb_I* 3l7z_C
Probab=40.84 E-value=9.7 Score=38.22 Aligned_cols=40 Identities=15% Similarity=-0.038 Sum_probs=32.1
Q ss_pred cccCcccceEEEcccccceEEEECCCCcccccceeeeccCCCcc
Q psy4856 604 RKSITEEEVARRTDLRHLDVCSVDPPGCTDIDDALHCRPLPNGN 647 (654)
Q Consensus 604 ~~~g~~~~~~~i~~~~~~g~~~v~~~~~~~~eg~vh~~~~~~~~ 647 (654)
-+.|+... |.|++++++|.| |++.. ..+|+||+|.+.+++
T Consensus 72 p~~GDiV~-G~V~~v~~~ga~-VdI~~--~~~GlL~isei~~~~ 111 (251)
T 2je6_I 72 PKINDIVI-GLVEDVEIYGWV-VDIKA--PYKAYLPASNLLGRS 111 (251)
T ss_dssp CCTTCEEE-EEEEEECSSEEE-EECSS--SSCEEEEHHHHHTSC
T ss_pred CCCCCEEE-EEEEEEeCceEE-EEcCC--CeEEEEEHHHhcCCc
Confidence 45677776 999999999999 87653 479999999887654
No 50
>2wp8_J Exosome complex exonuclease DIS3; nucleus, hydrolase, RNA-binding, exonucle binding, mitochondrion, rRNA processing; 3.00A {Saccharomyces cerevisiae}
Probab=40.68 E-value=30 Score=41.33 Aligned_cols=32 Identities=6% Similarity=0.161 Sum_probs=23.0
Q ss_pred EEEEeCCCCCCcEEEcc-ccc-cccCCCEEEEEEe
Q psy4856 256 HLFVPAERKIPKIRVET-RQI-ATLSGQRIVVAID 288 (654)
Q Consensus 256 ~l~vP~D~riP~I~I~t-~q~-~~l~~~rvvV~Id 288 (654)
+++.+.+. -..|+|+. .+. .++.|++|+|+|.
T Consensus 264 gfV~~~~~-~~DI~I~~~~~~n~A~~GD~V~V~i~ 297 (977)
T 2wp8_J 264 GSVSLPRF-SKPVLIVGQKNLNRAFNGDQVIVELL 297 (977)
T ss_dssp EEECCTTC-SSCEEEESHHHHTTCCTTCEEEEEEC
T ss_pred EEEEcCCC-CCCEEEcChHHhhhCcCCCEEEEEEe
Confidence 56666442 24699987 444 4789999999996
No 51
>3l0o_A Transcription termination factor RHO; helicase, RHO factor, RNA capture mechanism, ATP-binding, hydrolase, nucleotide-binding, RN binding; 2.35A {Thermotoga maritima}
Probab=40.37 E-value=22 Score=38.28 Aligned_cols=52 Identities=13% Similarity=0.130 Sum_probs=39.7
Q ss_pred CeEEEEEEEecCCCceeEEeecC-----CCcCeEecCCCCC-CcCCCCCEEEEEEccCCC
Q psy4856 134 SLLQGSFQASRENFLEGQVNCEG-----YDKPILVQGREGL-NRAIDGDTVAVRLLPESQ 187 (654)
Q Consensus 134 ~l~~G~l~v~~~n~~egfV~~~~-----~~~dI~I~g~~~~-NRAl~GD~V~Vellp~~~ 187 (654)
.+..|+|.+.+.|| ||++..+ .++||||...+-+ -.=-.||.|.-++-|..+
T Consensus 56 ~~~~g~le~~~~g~--gflr~~~~~y~~~~~d~yvs~~~ir~~~lr~gd~v~g~~r~~~~ 113 (427)
T 3l0o_A 56 FFGEGVLEIHPEGF--GFLRRIEDNLLPSNDDIYISPSQIRKFNLNTGDIISGVIRKPKE 113 (427)
T ss_dssp EEEEEEEEECTTSC--EEEECGGGTTCCCSSCEEECHHHHHHTTCCTTCEEEEEEECCCS
T ss_pred eeEEEEEEEcCCCc--eEeeCCccCCCCCCCCeeeCHHHHHhcCCCCCCEEEEEEeCCCC
Confidence 36789999999999 9999872 3689999985221 122379999999987653
No 52
>1umu_A UMUD'; induced mutagenesis, SOS mutagenesis, DNA repair, beta- lactamase cleavage reaction, LEXA repressor, lambda CI; 2.50A {Escherichia coli} SCOP: b.87.1.1 PDB: 1i4v_A 1ay9_A
Probab=40.35 E-value=79 Score=26.98 Aligned_cols=40 Identities=18% Similarity=0.147 Sum_probs=24.1
Q ss_pred ceeEEEEEeecCceeeeeecCCCCCCCceEEEEeCCCCCCcEEEcc
Q psy4856 227 TGQIVGIIKRKWRQYCGILQPNPLAGSSRHLFVPAERKIPKIRVET 272 (654)
Q Consensus 227 tGkVVgIi~R~~r~~vG~l~~~~~~~~~~~l~vP~D~riP~I~I~t 272 (654)
.|.||-+ ..+-..++-.+... . ...+.|.++..|.+.+..
T Consensus 58 ~gdivv~-~~~~~~~vKr~~~~----~-~~~L~s~N~~y~~~~i~~ 97 (116)
T 1umu_A 58 HGDIVIA-AVDGEFTVKKLQLR----P-TVQLIPMNSAYSPITISS 97 (116)
T ss_dssp TTCEEEE-EETTEEEEEEEECS----S-SCEEECSSTTSCCEECCT
T ss_pred CCCEEEE-EECCEEEEEEEEeC----C-cEEEECCCCCCCCEEcCC
Confidence 3555533 23333455555543 3 567889999998887754
No 53
>2ba0_A Archeal exosome RNA binding protein RRP4; RNAse PH, RNA degradation, exoribonuclease, S1domain, KH domain, archaeal; 2.70A {Archaeoglobus fulgidus} SCOP: b.40.4.5 b.84.4.2 d.51.1.1
Probab=36.52 E-value=23 Score=34.86 Aligned_cols=38 Identities=11% Similarity=-0.101 Sum_probs=31.6
Q ss_pred cccCcccceEEEcccccceEEEECCCCcccccceeeeccCCC
Q psy4856 604 RKSITEEEVARRTDLRHLDVCSVDPPGCTDIDDALHCRPLPN 645 (654)
Q Consensus 604 ~~~g~~~~~~~i~~~~~~g~~~v~~~~~~~~eg~vh~~~~~~ 645 (654)
-+.|+... |.|++++++|.| |++.. ..+|+||+|.+.+
T Consensus 55 p~~GDiV~-G~V~~v~~~~a~-V~I~~--~~~g~l~isev~~ 92 (229)
T 2ba0_A 55 PSVGDVVI-GIIREVAANGWA-VDIYS--PYQAFLPVSENPE 92 (229)
T ss_dssp CCTTCEEE-EEEEEECSSEEE-EECSS--SSCEEEEGGGCTT
T ss_pred CCCCCEEE-EEEEEEeCCeEE-EEeCC--CeEEEEEHHHccc
Confidence 46778887 999999999999 87653 3699999999885
No 54
>3a0j_A Cold shock protein; OB-fold, cytoplasm, transcription, structural genomics, NPPSFA; 1.65A {Thermus thermophilus}
Probab=35.74 E-value=36 Score=27.24 Aligned_cols=45 Identities=22% Similarity=0.431 Sum_probs=32.8
Q ss_pred EEEEEE--ecCCCceeEEeecCCCcCeEecCCCCCC-----cCCCCCEEEEEEccC
Q psy4856 137 QGSFQA--SRENFLEGQVNCEGYDKPILVQGREGLN-----RAIDGDTVAVRLLPE 185 (654)
Q Consensus 137 ~G~l~v--~~~n~~egfV~~~~~~~dI~I~g~~~~N-----RAl~GD~V~Vellp~ 185 (654)
+|++.- ..++| ||+..++. +|||+.-. ++. +--.||.|..++...
T Consensus 3 ~G~Vk~fn~~kGf--GFI~~~~g-~dvFvH~s-~i~~~g~~~l~~G~~V~f~~~~~ 54 (73)
T 3a0j_A 3 KGRVKWFNAEKGY--GFIEREGD-TDVFVHYT-AINAKGFRTLNEGDIVTFDVEPG 54 (73)
T ss_dssp EEEEEEEETTTTE--EEEECTTS-CCEEEEGG-GBCSSSCSSCCTTCEEEEEEECC
T ss_pred CEEEEEEECCCCE--EEEecCCC-CcEEEEhh-hccccCCCCCCCCCEEEEEEEEC
Confidence 566554 25678 99999875 89998876 442 346899999998654
No 55
>2kcm_A Cold shock domain family protein; nucleic acid binding protein, beta barrel, structural genomi 2, protein structure initiative; NMR {Shewanella oneidensis}
Probab=35.69 E-value=33 Score=27.72 Aligned_cols=45 Identities=13% Similarity=0.313 Sum_probs=32.8
Q ss_pred EEEEEE--ecCCCceeEEeecCCCcCeEecCCCCC------CcCCCCCEEEEEEccC
Q psy4856 137 QGSFQA--SRENFLEGQVNCEGYDKPILVQGREGL------NRAIDGDTVAVRLLPE 185 (654)
Q Consensus 137 ~G~l~v--~~~n~~egfV~~~~~~~dI~I~g~~~~------NRAl~GD~V~Vellp~ 185 (654)
+|++.- ..+|| ||+..++. +|||+.-. ++ .+--.||.|..++...
T Consensus 2 ~G~Vkwfn~~KGf--GFI~~~dG-~DvFvH~s-~i~~~~g~~~l~~G~~V~F~~~~g 54 (74)
T 2kcm_A 2 KGKVVSYLAAKKY--GFIQGDDG-ESYFLHFS-ELLDKKDEGKLVKGSMVHFDPTPT 54 (74)
T ss_dssp EEEEEEEETTTTE--EEEEETTS-CEECCCGG-GSSCSGGGTTCCTTSEEEEEEECT
T ss_pred CEEEEEEECCCCE--EEEecCCC-ceEEEEhh-hcccCCCCCCCCCCCEEEEEEEEC
Confidence 465554 25678 99999886 89998765 33 3456899999998643
No 56
>1c9o_A CSPB, cold-shock protein; beta barrel, homodimer, transcription; 1.17A {Bacillus caldolyticus} SCOP: b.40.4.5 PDB: 2hax_A 1hz9_A 1hzb_A 1i5f_A 1hza_A 1hzc_A 3pf4_A 1csq_A 1nmf_A 1nmg_A 1csp_A 2f52_A 2es2_A 3pf5_A 2i5m_X 2i5l_X
Probab=35.60 E-value=52 Score=25.70 Aligned_cols=45 Identities=16% Similarity=0.350 Sum_probs=32.6
Q ss_pred EEEEEEe--cCCCceeEEeecCCCcCeEecCCCCCC-----cCCCCCEEEEEEccC
Q psy4856 137 QGSFQAS--RENFLEGQVNCEGYDKPILVQGREGLN-----RAIDGDTVAVRLLPE 185 (654)
Q Consensus 137 ~G~l~v~--~~n~~egfV~~~~~~~dI~I~g~~~~N-----RAl~GD~V~Vellp~ 185 (654)
+|++.-- .++| ||+..++. +|||+.-. ++. +--.||.|..++-..
T Consensus 3 ~G~Vk~fn~~kGf--GFI~~~~g-~dvFvH~s-~i~~~g~~~l~~G~~V~f~~~~~ 54 (66)
T 1c9o_A 3 RGKVKWFNNEKGY--GFIEVEGG-SDVFVHFT-AIQGEGFKTLEEGQEVSFEIVQG 54 (66)
T ss_dssp EEEEEEEETTTTE--EEEEETTE-EEEEEEGG-GBCSSSCCCCCTTCEEEEEEEEE
T ss_pred ceEEEEEECCCCe--EEEecCCC-ccEEEEHH-HccccCCCCCCCCCEEEEEEEEC
Confidence 5665542 5678 99999876 89998876 342 345899999998643
No 57
>2k5n_A Putative cold-shock protein; GFT protein structure, PSI, nesgc, OB fold, cold shock structural genomics; NMR {Pectobacterium atrosepticum}
Probab=34.67 E-value=62 Score=26.04 Aligned_cols=46 Identities=13% Similarity=0.156 Sum_probs=32.9
Q ss_pred EEEEEEEe--cCCCceeEEeecCCCcCeEecCCCCCC---cCCCCCEEEEEEccC
Q psy4856 136 LQGSFQAS--RENFLEGQVNCEGYDKPILVQGREGLN---RAIDGDTVAVRLLPE 185 (654)
Q Consensus 136 ~~G~l~v~--~~n~~egfV~~~~~~~dI~I~g~~~~N---RAl~GD~V~Vellp~ 185 (654)
.+|++.-- .++| ||+..++.+++ |+.-. ++. +--.||.|..++...
T Consensus 3 ~~G~Vkwfn~~KGf--GFI~~~dg~~d-FvH~s-~i~~~g~l~~G~~V~F~~~~g 53 (74)
T 2k5n_A 3 MNGTITTWFKDKGF--GFIKDENGDNR-YFHVI-KVANPDLIKKDAAVTFEPTTN 53 (74)
T ss_dssp EEEEEEEEETTTTE--EEEEESSSCEE-EEEGG-GBSSGGGCCTTCEEEEEEEEC
T ss_pred cceEEEEEECCCCe--EEEecCCCCce-EEEHh-HcccCCCCCCCCEEEEEEEeC
Confidence 46776643 5688 99999886666 77654 332 567899999998643
No 58
>2hnf_A Repressor protein CI101-229DM-K192A; viral protein; 1.80A {Escherichia coli} PDB: 2ho0_A 1f39_A
Probab=33.57 E-value=97 Score=27.19 Aligned_cols=41 Identities=15% Similarity=0.087 Sum_probs=23.4
Q ss_pred ceeEEEEEeecCceeeeeecCCCCCCCceEEEEeCCCCCCcEEEc
Q psy4856 227 TGQIVGIIKRKWRQYCGILQPNPLAGSSRHLFVPAERKIPKIRVE 271 (654)
Q Consensus 227 tGkVVgIi~R~~r~~vG~l~~~~~~~~~~~l~vP~D~riP~I~I~ 271 (654)
.|.+|-+.-.....++-+|... .+..++.|.++..|.|.+.
T Consensus 80 ~Gdivv~~~~~~~~~vKrl~~~----~~~~~L~s~N~~y~~~~~~ 120 (133)
T 2hnf_A 80 PGDFCIARLGGDEFTFAKLIRD----SGQVFLQPLNPQYPMIPCN 120 (133)
T ss_dssp TTSEEEEEETTTEEEEEEEEEE----TTEEEEECSSTTSCCEECS
T ss_pred CCCEEEEEECCCEEEEEEEEEe----CCeEEEEECCCCCCCEEcC
Confidence 3555544322212344444432 3457789999999888764
No 59
>2z0s_A Probable exosome complex RNA-binding protein 1; alpha/beta protein, cytoplasm, structural genomics, NPPSFA; 3.20A {Aeropyrum pernix} SCOP: b.40.4.5 d.51.1.1
Probab=32.91 E-value=15 Score=36.35 Aligned_cols=38 Identities=8% Similarity=-0.063 Sum_probs=31.2
Q ss_pred cccCcccceEEEcccccceEEEECCCCcccccceeeeccCCC
Q psy4856 604 RKSITEEEVARRTDLRHLDVCSVDPPGCTDIDDALHCRPLPN 645 (654)
Q Consensus 604 ~~~g~~~~~~~i~~~~~~g~~~v~~~~~~~~eg~vh~~~~~~ 645 (654)
-+.|+... |.|++++++|.| |++.. ..+|+||+|.+.+
T Consensus 64 p~~GDiV~-G~V~~v~~~~~~-V~I~~--~~~g~l~isei~~ 101 (235)
T 2z0s_A 64 PQAGDVVI-GLIQSVGIMNWF-VDINS--PYVAVLSVQDFLG 101 (235)
T ss_dssp CCTTCCEE-EEEEEECSSEEE-EECSS--SSCEEEEHHHHHT
T ss_pred CCCCCEEE-EEEEEEeCCeEE-EEeCC--CeEEEEEHHHhCC
Confidence 45677777 999999999999 87643 4799999998865
No 60
>2bh8_A 1B11; transcription, molecular evolution, unique architecture, transcription regulation, phosphorylation; 1.9A {Escherichia coli}
Probab=32.65 E-value=83 Score=26.63 Aligned_cols=52 Identities=17% Similarity=0.268 Sum_probs=35.2
Q ss_pred cCCeEEEEEEE--ecCCCceeEEeecCCCcCeEecCCCCC------CcCCCCCEEEEEEccC
Q psy4856 132 NQSLLQGSFQA--SRENFLEGQVNCEGYDKPILVQGREGL------NRAIDGDTVAVRLLPE 185 (654)
Q Consensus 132 ~g~l~~G~l~v--~~~n~~egfV~~~~~~~dI~I~g~~~~------NRAl~GD~V~Vellp~ 185 (654)
.+...+|++.- ..++| ||+.+++.+.|+|+.=..-. .+--.|++|..++..-
T Consensus 13 ~~~~~~G~Vk~fn~~kGf--GFI~~~~gg~dvfvH~s~l~~~~~~~~~l~~Ge~V~g~V~~i 72 (101)
T 2bh8_A 13 QSGKMTGIVKWFNADKGF--GFITPDDGSKDVFVHFSAGSSGAAVRGNPQQGDRVEGKIKSI 72 (101)
T ss_dssp ---CEEEEEEEEEGGGTE--EEEEESSSSCEEEEECCCSCSSSCCCCCCCTTCEEEEEEEEC
T ss_pred ccccceeEEEEEECCCCC--EEEEeCCCCcEEEEEEEEEecCCccccCCCCCCEEEEEEEEe
Confidence 45678999885 35678 99999877789998876222 2344688888777543
No 61
>1g6p_A Cold shock protein TMCSP; greek-KEY, beta barrel, OB-fold, structural genomics; NMR {Thermotoga maritima} SCOP: b.40.4.5
Probab=29.87 E-value=83 Score=24.49 Aligned_cols=45 Identities=11% Similarity=0.283 Sum_probs=31.8
Q ss_pred EEEEEEe--cCCCceeEEeecCCCcCeEecCCCCCC-----cCCCCCEEEEEEccC
Q psy4856 137 QGSFQAS--RENFLEGQVNCEGYDKPILVQGREGLN-----RAIDGDTVAVRLLPE 185 (654)
Q Consensus 137 ~G~l~v~--~~n~~egfV~~~~~~~dI~I~g~~~~N-----RAl~GD~V~Vellp~ 185 (654)
+|++.-- .++| ||+..++ ++|||+.-. ++. +--.||.|..++-..
T Consensus 2 ~G~Vk~fn~~kGf--GFI~~~~-g~dvFvH~s-~i~~~g~~~l~~G~~V~f~~~~~ 53 (66)
T 1g6p_A 2 RGKVKWFDSKKGY--GFITKDE-GGDVFVHWS-AIEMEGFKTLKEGQVVEFEIQEG 53 (66)
T ss_dssp CEEEEEEETTTTE--EEEEETT-SCBCBBCSS-SSCCSSCCCCCSSSEEEEEEECS
T ss_pred cEEEEEEECCCCE--EEEecCC-CceEEEEhH-HccccCCCCCCCCCEEEEEEEEC
Confidence 4555432 5678 9999986 489998876 332 345899999998643
No 62
>2lss_A Cold shock-like protein; CSD, CSP, oligonucleotide binding F fold, RNA binding protein, DNA binding protein; NMR {Rickettsia rickettsii}
Probab=35.51 E-value=11 Score=30.01 Aligned_cols=46 Identities=22% Similarity=0.359 Sum_probs=32.7
Q ss_pred EEEEEEE--ecCCCceeEEeecCCCcCeEecCCCCCC-----cCCCCCEEEEEEcc
Q psy4856 136 LQGSFQA--SRENFLEGQVNCEGYDKPILVQGREGLN-----RAIDGDTVAVRLLP 184 (654)
Q Consensus 136 ~~G~l~v--~~~n~~egfV~~~~~~~dI~I~g~~~~N-----RAl~GD~V~Vellp 184 (654)
++|++.- ..++| ||+..++.++|||+.-. ++. .--.||.|..++-.
T Consensus 5 ~~G~Vk~fn~~kGf--GFI~~~~gg~dvFvH~s-~i~~~g~~~l~~G~~V~f~~~~ 57 (70)
T 2lss_A 5 IVGKVKWYNSTKNF--GFIEQDNGGKDVFVHKS-AVDAAGLHSLEEGQDVIFDLEE 57 (70)
Confidence 4566553 24678 99999887789998886 443 23578888888754
No 63
>1v96_A Hypothetical protein PH0500; rossmann fold, tRNA synthetase, nucleotide binding protein, structural genomics; 1.75A {Pyrococcus horikoshii} SCOP: c.120.1.1 PDB: 1ye5_A 1y82_A
Probab=29.24 E-value=68 Score=28.25 Aligned_cols=30 Identities=20% Similarity=0.428 Sum_probs=24.8
Q ss_pred EEEeCChhhHHHHhhcCcceeeHHHHHhhC
Q psy4856 62 ILLSEDVRNRDLATQSGLLTSSIEGYISTL 91 (654)
Q Consensus 62 vllt~d~~~~~~a~~~gi~~~s~~~yv~~~ 91 (654)
.++|.|.+..++....|+.++|..+|++.+
T Consensus 111 ~lvT~D~kdf~~i~~~~i~~i~~~efl~~~ 140 (149)
T 1v96_A 111 LLVTDDPKRYEPIRRFGLDTMPLDKFIKEV 140 (149)
T ss_dssp EEEESCHHHHGGGGGGTCCEEEHHHHHHHH
T ss_pred EEEECCHHHHhhhhhCCeeecCHHHHHHHH
Confidence 578999766666667799999999999875
No 64
>3ulj_A LIN28B, DNA-binding protein; beta barrel, cold shock domain fold, nucleic acid binding, D binding protein; 1.06A {Silurana} PDB: 4a4i_A
Probab=24.88 E-value=57 Score=27.36 Aligned_cols=47 Identities=17% Similarity=0.215 Sum_probs=31.8
Q ss_pred EEEEEEE--ecCCCceeEEeec-------CCCcCeEecCCCCCCc-----CCCCCEEEEEEccC
Q psy4856 136 LQGSFQA--SRENFLEGQVNCE-------GYDKPILVQGREGLNR-----AIDGDTVAVRLLPE 185 (654)
Q Consensus 136 ~~G~l~v--~~~n~~egfV~~~-------~~~~dI~I~g~~~~NR-----Al~GD~V~Vellp~ 185 (654)
..|++.- +.++| ||+..+ +.++|||+.-. .+.. -..|+.|..++...
T Consensus 9 ~tG~VKWFn~~KGf--GFI~~~~~~~~p~dgg~DvFVH~s-~i~~~g~~~L~eG~~V~f~v~~g 69 (90)
T 3ulj_A 9 GSGHCKWFNVRMGF--GFISMTSREGSPLENPVDVFVHQS-KLYMEGFRSLKEGEPVEFTFKKS 69 (90)
T ss_dssp EEEEEEEEETTTTE--EEEEEEEETTEEEEEEEEEEEEGG-GBCCSSSCCCCTTCEEEEEEEEE
T ss_pred cceEEEEeeCCCCe--EEeEecCcCcCCCCCCccEEEEee-hhcccCCCccCCCCEEEEEEEEC
Confidence 3576664 46788 999743 33578998765 3332 35799999998643
No 65
>2khj_A 30S ribosomal protein S1; OB fold, acetylation, phosphoprotein, ribonucleoprotein, RNA-binding; NMR {Escherichia coli}
Probab=24.22 E-value=1.9e+02 Score=24.35 Aligned_cols=62 Identities=15% Similarity=0.064 Sum_probs=37.5
Q ss_pred CHHHHHHhhhcCCeEEEEEEEecCCCceeEEeecCCCcCeEecCCC-------CCCc-CCCCCEEEEEEccCC
Q psy4856 122 TPSEIHAGIKNQSLLQGSFQASRENFLEGQVNCEGYDKPILVQGRE-------GLNR-AIDGDTVAVRLLPES 186 (654)
Q Consensus 122 ~~~~l~~gik~g~l~~G~l~v~~~n~~egfV~~~~~~~dI~I~g~~-------~~NR-Al~GD~V~Vellp~~ 186 (654)
|-+++..-++-|..+.|++.--...- +||.+++ +-+=+|+-.. +.+. ---||.|.|+++.-+
T Consensus 21 p~~~~~~~~~~G~iv~G~V~~v~~~G--~fV~l~~-~~~Gll~~sel~~~~~~~~~~~~~vGd~V~v~V~~vd 90 (109)
T 2khj_A 21 MFNNWVALNKKGAIVTGKVTAVDAKG--ATVELAD-GVEGYLRASEASRDRVEDATLVLSVGDEVEAKFTGVD 90 (109)
T ss_dssp CHHHHTTTCCSSSEEEEEEEEECSSC--EEEECST-TCBCCBCTTCCCSSSSSSGGGSCCTTCEEEEEEEEEE
T ss_pred HHHHHhhcCCCCCEEEEEEEEEECCe--EEEEECC-CCEEEEEHHHcCcccccChhhccCCCCEEEEEEEEEE
Confidence 34455667788999999886544333 8998864 2233333221 1111 225999999998643
No 66
>1yvc_A MRR5; structure, autostructure, autoassign, northeast structural genomics, autoqf, PSI, protein structure initiative; NMR {Methanococcus maripaludis} SCOP: b.40.4.12
Probab=24.14 E-value=1.3e+02 Score=23.56 Aligned_cols=46 Identities=13% Similarity=0.237 Sum_probs=30.9
Q ss_pred hhcCCeEEEEEE-EecCCCceeEEeecCCCcCeEecCCCCCCcCCCCCEEEEEEccC
Q psy4856 130 IKNQSLLQGSFQ-ASRENFLEGQVNCEGYDKPILVQGREGLNRAIDGDTVAVRLLPE 185 (654)
Q Consensus 130 ik~g~l~~G~l~-v~~~n~~egfV~~~~~~~dI~I~g~~~~NRAl~GD~V~Vellp~ 185 (654)
++.|..+..++. ....|. |....++ ..|||+| |+.||.|.|++...
T Consensus 13 ~~~~~~~~v~I~~l~~~G~--Gva~~~g--~~vfV~~------alPGE~V~v~i~k~ 59 (70)
T 1yvc_A 13 VEAGKEYEVTIEDMGKGGD--GIARIDG--FVVFVPN------AEKGSVINVKVTAV 59 (70)
T ss_dssp SCTTCEEEEECCEECTTSC--EEEEETT--EEEEETT------CCTTCEEEEEEEEE
T ss_pred ccCCCEEEEEEEEcCCCcc--EEEEECC--EEEEccC------CCCCCEEEEEEEEe
Confidence 345666655442 333444 7777653 5689987 89999999999753
No 67
>3ts2_A Protein LIN-28 homolog A; microrna biogenesis, protein-RNA complex, PRE-element, CCHC knuckle; HET: GMP; 2.01A {Mus musculus} PDB: 3trz_A* 3ts0_A*
Probab=24.13 E-value=56 Score=29.88 Aligned_cols=47 Identities=17% Similarity=0.218 Sum_probs=33.3
Q ss_pred EEEEEEE--ecCCCceeEEeec-------CCCcCeEecCCCCCC-----cCCCCCEEEEEEccC
Q psy4856 136 LQGSFQA--SRENFLEGQVNCE-------GYDKPILVQGREGLN-----RAIDGDTVAVRLLPE 185 (654)
Q Consensus 136 ~~G~l~v--~~~n~~egfV~~~-------~~~~dI~I~g~~~~N-----RAl~GD~V~Vellp~ 185 (654)
.+|++.- ..++| ||+..+ +.++||||.-. ++. .--.||.|..++...
T Consensus 10 ~~G~Vkwfn~~kGf--GFI~~~~~~g~p~~~g~DvFvH~s-~i~~~g~~~l~eG~~V~f~~~~g 70 (148)
T 3ts2_A 10 GAGICKWFNVRMGF--GFLSMTARAGVALDPPVDVFVHQS-KLHMEGFRSLKEGEAVEFTFKKS 70 (148)
T ss_dssp EEEEEEEEETTTTE--EEEEEEEETTEEEEEEEEEEEEGG-GBCSSSSCCCCTTCEEEEEEEEE
T ss_pred ceeEEEEEECCCCe--eEEeeCccccccCCCCccEEEEhH-HhcccCCccCCCCCEEEEEEEEc
Confidence 4677765 35678 999986 24679998775 442 334899999998654
No 68
>3bdn_A Lambda repressor; repressor, allostery; HET: DNA; 3.91A {Enterobacteria phage lambda}
Probab=22.44 E-value=2e+02 Score=27.25 Aligned_cols=41 Identities=15% Similarity=0.059 Sum_probs=22.5
Q ss_pred ceeEEEEEeecCceeeeeecCCCCCCCceEEEEeCCCCCCcEEEc
Q psy4856 227 TGQIVGIIKRKWRQYCGILQPNPLAGSSRHLFVPAERKIPKIRVE 271 (654)
Q Consensus 227 tGkVVgIi~R~~r~~vG~l~~~~~~~~~~~l~vP~D~riP~I~I~ 271 (654)
.|.+|-+.-..-..+|-.|... .+..+++|.++..|.|.+.
T Consensus 176 ~g~ivv~~~~~~~~~vKrl~~~----~~~~~L~s~N~~y~~~~~~ 216 (236)
T 3bdn_A 176 PGDFCIARLGGDEFTFKKLIRG----SGQVFLQPLNPQYPMIPCN 216 (236)
T ss_dssp TTSEEEEESTTTCCCCEEEECC----SSSCEEECSSTTSCCBC--
T ss_pred CCcEEEEEECCCeEEEEEEEEc----CCcEEEEeCCCCCCCeecC
Confidence 3665544322123345555443 3456788999999877664
No 69
>1pcq_O Groes protein; chaperone; HET: ADP; 2.81A {Escherichia coli} SCOP: b.35.1.1 PDB: 1gru_O 1aon_O* 1pf9_O* 1svt_O* 1sx4_O* 2c7c_O 2c7d_O
Probab=22.43 E-value=1.1e+02 Score=26.14 Aligned_cols=40 Identities=18% Similarity=0.222 Sum_probs=24.4
Q ss_pred CCCEEEEEEccCCCcCCccccccccCCCCCCccccccccccCCCCCCCCCCCCceeEEEEEe
Q psy4856 174 DGDTVAVRLLPESQWSAPLELVLEDEGSGEDEEGEDGKLIKGNKTVPPAERRPTGQIVGIIK 235 (654)
Q Consensus 174 ~GD~V~Vellp~~~w~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ptGkVVgIi~ 235 (654)
-||+|+|+.....+ ++.+..++.+.. ..+-..|+||.|=.
T Consensus 6 L~DRVlVk~~e~e~-kT~gGI~LP~sa---------------------keKp~~G~VvAVG~ 45 (97)
T 1pcq_O 6 LHDRVIVKRKEVET-KSAGGIVLTGSA---------------------AAKSTRGEVLAVGN 45 (97)
T ss_dssp CSSEEEEEECCTTC-TTTTSSCCCCCC---------------------SCCCCEEEEEEECS
T ss_pred cCCEEEEEEccccc-cccceEEeCccc---------------------ccCCcccEEEEEcC
Confidence 48999999886543 344444444321 12335799998764
No 70
>1kca_A Repressor protein CI; gene regulation, DNA-binding, lambda repressor, protein oligomerization, DNA-looping; 2.91A {Enterobacteria phage lambda} SCOP: b.87.1.1
Probab=22.11 E-value=2.3e+02 Score=23.84 Aligned_cols=18 Identities=17% Similarity=0.368 Sum_probs=14.4
Q ss_pred ceEEEEeCCCCCCcEEEc
Q psy4856 254 SRHLFVPAERKIPKIRVE 271 (654)
Q Consensus 254 ~~~l~vP~D~riP~I~I~ 271 (654)
+..++.|.++..|.|.+.
T Consensus 72 ~~~~L~s~N~~y~~~~~~ 89 (109)
T 1kca_A 72 GQVFLQPLNPQYPMIPCN 89 (109)
T ss_dssp TEEEEECSSTTSCCEECC
T ss_pred CEEEEEECCCCCCCEEcC
Confidence 457789999999887764
No 71
>1o4w_A PIN (PILT N-terminus) domain; structural genomics, joint CEN structural genomics, JCSG, protein structure initiative, PS translation; 1.90A {Archaeoglobus fulgidus} SCOP: c.120.1.1
Probab=20.70 E-value=70 Score=28.61 Aligned_cols=38 Identities=26% Similarity=0.368 Sum_probs=30.4
Q ss_pred hHHHHHHHHHhHhhhhhhccCCeEEEEeCChhhHHHHhhcCcceeeHHH
Q psy4856 38 DRALRRVATWYVKYEEHLESAVRVILLSEDVRNRDLATQSGLLTSSIEG 86 (654)
Q Consensus 38 ~r~i~~aa~wY~~~~~Hl~~~~~vvllt~d~~~~~~a~~~gi~~~s~~~ 86 (654)
|-.|...|.-. + .+|+|+|++-+++|+..|+.++++..
T Consensus 100 D~~Ila~A~~~---------~--~~LvT~D~~l~~~a~~~Gv~vi~~~~ 137 (147)
T 1o4w_A 100 DPSLIEAAEKY---------G--CILITNDKELKRKAKQRGIPVGYLKE 137 (147)
T ss_dssp HHHHHHHHHHH---------T--CEEECCCHHHHHHHHHTTCCEECCCC
T ss_pred hHHHHHHHHHh---------C--CEEEECCHHHHHHHHHCCCeEEEecC
Confidence 77887777655 1 57889998888889888999988764
No 72
>1p3h_A 10 kDa chaperonin; beta barrel, acidic cluster, flexible loop, structural genomics, PSI, protein structure initiative; 2.80A {Mycobacterium tuberculosis} SCOP: b.35.1.1 PDB: 1hx5_A 1lep_A 1p82_A 1p83_A
Probab=20.29 E-value=1e+02 Score=26.32 Aligned_cols=42 Identities=19% Similarity=0.239 Sum_probs=25.7
Q ss_pred CCCCCEEEEEEccCCCcCCccccccccCCCCCCccccccccccCCCCCCCCCCCCceeEEEEEe
Q psy4856 172 AIDGDTVAVRLLPESQWSAPLELVLEDEGSGEDEEGEDGKLIKGNKTVPPAERRPTGQIVGIIK 235 (654)
Q Consensus 172 Al~GD~V~Vellp~~~w~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ptGkVVgIi~ 235 (654)
---||+|+|+.....+ ++.+..++.+.. ..+-..|+||.|=.
T Consensus 6 ~PL~DRVlVk~~e~e~-kT~gGI~LP~sa---------------------keKp~~G~VvAVG~ 47 (99)
T 1p3h_A 6 KPLEDKILVQANEAET-TTASGLVIPDTA---------------------KEKPQEGTVVAVGP 47 (99)
T ss_dssp EECTTEEEEEECCCCC-BCTTSCBCCCSS---------------------CCSEEEEEEEEECC
T ss_pred EEeCCEEEEEEccccc-cccceEEeCccc---------------------ccCCceEEEEEECC
Confidence 3458999999986543 444444444321 12334799998864
Done!