BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy4857
(327 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2J3R|A Chain A, The Crystal Structure Of The Bet3-Trs31 Heterodimer.
pdb|2J3T|A Chain A, The Crystal Structure Of The Bet3-Trs33-Bet5-Trs23
Complex.
pdb|2J3W|D Chain D, The Crystal Structure Of The Bet3-Trs31-Sedlin Complex.
pdb|2J3W|E Chain E, The Crystal Structure Of The Bet3-Trs31-Sedlin Complex
Length = 182
Score = 241 bits (616), Expect = 3e-64, Method: Compositional matrix adjust.
Identities = 111/166 (66%), Positives = 142/166 (85%), Gaps = 1/166 (0%)
Query: 163 NSELFTLTYGALVSQLLKDYDNVEDVNKQLDRMGYNIGIRLIEDFLARTQSTRCYDFKET 222
+SELFTLTYGALV+QL KDY+N EDVNKQLDRMGYNIG+RLIEDFLAR+ RC+DF+ET
Sbjct: 17 SSELFTLTYGALVTQLCKDYENDEDVNKQLDRMGYNIGVRLIEDFLARSNVGRCHDFRET 76
Query: 223 AEKI-QLGFRIYLGISPNISNWSAGGDEFSLIFETNPMLEFVELPDNCTNLKYCNVLTGV 281
A+ I ++ F++YLGI+P+I+NWS GDEFSLI E NP+++FVELPDN + L Y N+L GV
Sbjct: 77 ADVIAKVAFKMYLGITPSITNWSPAGDEFSLILENNPLVDFVELPDNHSALIYSNLLCGV 136
Query: 282 LRGACEMVQLDITSKFIQDQLKGDNVTELRVKFIKTIQDAIPAGED 327
LRGA EMVQ+ + +KF+QD LKGD VTE+R++FI+ I+D +PAGE+
Sbjct: 137 LRGALEMVQMAVEAKFVQDTLKGDGVTEIRMRFIRRIEDNLPAGEE 182
Score = 234 bits (596), Expect = 6e-62, Method: Compositional matrix adjust.
Identities = 111/164 (67%), Positives = 139/164 (84%), Gaps = 2/164 (1%)
Query: 1 MARQGNR-LDSKKVNSELFTLTYGALVSQLLKDYDNVEDVNKQLDRMGYNIGIRLIEDFL 59
M+RQ NR +SKK++SELFTLTYGALV+QL KDY+N EDVNKQLDRMGYNIG+RLIEDFL
Sbjct: 3 MSRQANRGTESKKMSSELFTLTYGALVTQLCKDYENDEDVNKQLDRMGYNIGVRLIEDFL 62
Query: 60 ARTQSTRCYDFKETAEKI-QLGFRIYLGISPNISNWSAGGDEFSLIFETNPMLEFVELPD 118
AR+ RC+DF+ETA+ I ++ F++YLGI+P+I+NWS GDEFSLI E NP+++FVELPD
Sbjct: 63 ARSNVGRCHDFRETADVIAKVAFKMYLGITPSITNWSPAGDEFSLILENNPLVDFVELPD 122
Query: 119 NCTNLKYCNVLTGVLRGACEMVQLDITSKFIQDQLKGDNVTELR 162
N + L Y N+L GVLRGA EMVQ+ + +KF+QD LKGD VTE+R
Sbjct: 123 NHSALIYSNLLCGVLRGALEMVQMAVEAKFVQDTLKGDGVTEIR 166
>pdb|1WC8|A Chain A, The Crystal Structure Of Mouse Bet3p
Length = 180
Score = 241 bits (615), Expect = 4e-64, Method: Compositional matrix adjust.
Identities = 111/166 (66%), Positives = 142/166 (85%), Gaps = 1/166 (0%)
Query: 163 NSELFTLTYGALVSQLLKDYDNVEDVNKQLDRMGYNIGIRLIEDFLARTQSTRCYDFKET 222
+SELFTLTYGALV+QL KDY+N EDVNKQLDRMGYNIG+RLIEDFLAR+ RC+DF+ET
Sbjct: 15 SSELFTLTYGALVTQLCKDYENDEDVNKQLDRMGYNIGVRLIEDFLARSNVGRCHDFRET 74
Query: 223 AEKI-QLGFRIYLGISPNISNWSAGGDEFSLIFETNPMLEFVELPDNCTNLKYCNVLTGV 281
A+ I ++ F++YLGI+P+I+NWS GDEFSLI E NP+++FVELPDN + L Y N+L GV
Sbjct: 75 ADVIAKVAFKMYLGITPSITNWSPAGDEFSLILENNPLVDFVELPDNHSALIYSNLLCGV 134
Query: 282 LRGACEMVQLDITSKFIQDQLKGDNVTELRVKFIKTIQDAIPAGED 327
LRGA EMVQ+ + +KF+QD LKGD VTE+R++FI+ I+D +PAGE+
Sbjct: 135 LRGALEMVQMAVEAKFVQDTLKGDGVTEIRMRFIRRIEDNLPAGEE 180
Score = 233 bits (595), Expect = 8e-62, Method: Compositional matrix adjust.
Identities = 111/164 (67%), Positives = 139/164 (84%), Gaps = 2/164 (1%)
Query: 1 MARQGNR-LDSKKVNSELFTLTYGALVSQLLKDYDNVEDVNKQLDRMGYNIGIRLIEDFL 59
M+RQ NR +SKK++SELFTLTYGALV+QL KDY+N EDVNKQLDRMGYNIG+RLIEDFL
Sbjct: 1 MSRQANRGTESKKMSSELFTLTYGALVTQLCKDYENDEDVNKQLDRMGYNIGVRLIEDFL 60
Query: 60 ARTQSTRCYDFKETAEKI-QLGFRIYLGISPNISNWSAGGDEFSLIFETNPMLEFVELPD 118
AR+ RC+DF+ETA+ I ++ F++YLGI+P+I+NWS GDEFSLI E NP+++FVELPD
Sbjct: 61 ARSNVGRCHDFRETADVIAKVAFKMYLGITPSITNWSPAGDEFSLILENNPLVDFVELPD 120
Query: 119 NCTNLKYCNVLTGVLRGACEMVQLDITSKFIQDQLKGDNVTELR 162
N + L Y N+L GVLRGA EMVQ+ + +KF+QD LKGD VTE+R
Sbjct: 121 NHSALIYSNLLCGVLRGALEMVQMAVEAKFVQDTLKGDGVTEIR 164
>pdb|1SZ7|A Chain A, Crystal Structure Of Human Bet3
Length = 200
Score = 239 bits (610), Expect = 1e-63, Method: Compositional matrix adjust.
Identities = 109/166 (65%), Positives = 143/166 (86%), Gaps = 1/166 (0%)
Query: 163 NSELFTLTYGALVSQLLKDYDNVEDVNKQLDRMGYNIGIRLIEDFLARTQSTRCYDFKET 222
+SELFTLTYGALV+QL KDY+N EDVNKQLD+MG+NIG+RLIEDFLAR+ RC+DF+ET
Sbjct: 24 SSELFTLTYGALVTQLCKDYENDEDVNKQLDKMGFNIGVRLIEDFLARSNVGRCHDFRET 83
Query: 223 AEKI-QLGFRIYLGISPNISNWSAGGDEFSLIFETNPMLEFVELPDNCTNLKYCNVLTGV 281
A+ I ++ F++YLGI+P+I+NWS GDEFSLI E NP+++FVELPDN ++L Y N+L GV
Sbjct: 84 ADVIAKVAFKMYLGITPSITNWSPAGDEFSLILENNPLVDFVELPDNHSSLIYSNLLCGV 143
Query: 282 LRGACEMVQLDITSKFIQDQLKGDNVTELRVKFIKTIQDAIPAGED 327
LRGA EMVQ+ + +KF+QD LKGD VTE+R++FI+ I+D +PAGE+
Sbjct: 144 LRGALEMVQMAVEAKFVQDTLKGDGVTEIRMRFIRRIEDNLPAGEE 189
Score = 229 bits (585), Expect = 1e-60, Method: Compositional matrix adjust.
Identities = 108/163 (66%), Positives = 139/163 (85%), Gaps = 2/163 (1%)
Query: 2 ARQGNR-LDSKKVNSELFTLTYGALVSQLLKDYDNVEDVNKQLDRMGYNIGIRLIEDFLA 60
+RQ NR +SKK++SELFTLTYGALV+QL KDY+N EDVNKQLD+MG+NIG+RLIEDFLA
Sbjct: 11 SRQANRGTESKKMSSELFTLTYGALVTQLCKDYENDEDVNKQLDKMGFNIGVRLIEDFLA 70
Query: 61 RTQSTRCYDFKETAEKI-QLGFRIYLGISPNISNWSAGGDEFSLIFETNPMLEFVELPDN 119
R+ RC+DF+ETA+ I ++ F++YLGI+P+I+NWS GDEFSLI E NP+++FVELPDN
Sbjct: 71 RSNVGRCHDFRETADVIAKVAFKMYLGITPSITNWSPAGDEFSLILENNPLVDFVELPDN 130
Query: 120 CTNLKYCNVLTGVLRGACEMVQLDITSKFIQDQLKGDNVTELR 162
++L Y N+L GVLRGA EMVQ+ + +KF+QD LKGD VTE+R
Sbjct: 131 HSSLIYSNLLCGVLRGALEMVQMAVEAKFVQDTLKGDGVTEIR 173
>pdb|2CFH|A Chain A, Structure Of The Bet3-Tpc6b Core Of Trapp
pdb|2CFH|B Chain B, Structure Of The Bet3-Tpc6b Core Of Trapp
Length = 194
Score = 239 bits (609), Expect = 2e-63, Method: Compositional matrix adjust.
Identities = 109/166 (65%), Positives = 143/166 (86%), Gaps = 1/166 (0%)
Query: 163 NSELFTLTYGALVSQLLKDYDNVEDVNKQLDRMGYNIGIRLIEDFLARTQSTRCYDFKET 222
+SELFTLTYGALV+QL KDY+N EDVNKQLD+MG+NIG+RLIEDFLAR+ RC+DF+ET
Sbjct: 29 SSELFTLTYGALVTQLCKDYENDEDVNKQLDKMGFNIGVRLIEDFLARSNVGRCHDFRET 88
Query: 223 AEKI-QLGFRIYLGISPNISNWSAGGDEFSLIFETNPMLEFVELPDNCTNLKYCNVLTGV 281
A+ I ++ F++YLGI+P+I+NWS GDEFSLI E NP+++FVELPDN ++L Y N+L GV
Sbjct: 89 ADVIAKVAFKMYLGITPSITNWSPAGDEFSLILENNPLVDFVELPDNHSSLIYSNLLCGV 148
Query: 282 LRGACEMVQLDITSKFIQDQLKGDNVTELRVKFIKTIQDAIPAGED 327
LRGA EMVQ+ + +KF+QD LKGD VTE+R++FI+ I+D +PAGE+
Sbjct: 149 LRGALEMVQMAVEAKFVQDTLKGDGVTEIRMRFIRRIEDNLPAGEE 194
Score = 231 bits (590), Expect = 4e-61, Method: Compositional matrix adjust.
Identities = 109/164 (66%), Positives = 140/164 (85%), Gaps = 2/164 (1%)
Query: 1 MARQGNR-LDSKKVNSELFTLTYGALVSQLLKDYDNVEDVNKQLDRMGYNIGIRLIEDFL 59
M+RQ NR +SKK++SELFTLTYGALV+QL KDY+N EDVNKQLD+MG+NIG+RLIEDFL
Sbjct: 15 MSRQANRGTESKKMSSELFTLTYGALVTQLCKDYENDEDVNKQLDKMGFNIGVRLIEDFL 74
Query: 60 ARTQSTRCYDFKETAEKI-QLGFRIYLGISPNISNWSAGGDEFSLIFETNPMLEFVELPD 118
AR+ RC+DF+ETA+ I ++ F++YLGI+P+I+NWS GDEFSLI E NP+++FVELPD
Sbjct: 75 ARSNVGRCHDFRETADVIAKVAFKMYLGITPSITNWSPAGDEFSLILENNPLVDFVELPD 134
Query: 119 NCTNLKYCNVLTGVLRGACEMVQLDITSKFIQDQLKGDNVTELR 162
N ++L Y N+L GVLRGA EMVQ+ + +KF+QD LKGD VTE+R
Sbjct: 135 NHSSLIYSNLLCGVLRGALEMVQMAVEAKFVQDTLKGDGVTEIR 178
>pdb|3KXC|A Chain A, Mutant Transport Protein
Length = 194
Score = 236 bits (602), Expect = 1e-62, Method: Compositional matrix adjust.
Identities = 108/166 (65%), Positives = 142/166 (85%), Gaps = 1/166 (0%)
Query: 163 NSELFTLTYGALVSQLLKDYDNVEDVNKQLDRMGYNIGIRLIEDFLARTQSTRCYDFKET 222
+SELFTLTYGALV+QL KDY+N EDVNKQLD+MG+NIG+RLIEDFLAR+ R +DF+ET
Sbjct: 29 SSELFTLTYGALVTQLCKDYENDEDVNKQLDKMGFNIGVRLIEDFLARSNVGRAHDFRET 88
Query: 223 AEKI-QLGFRIYLGISPNISNWSAGGDEFSLIFETNPMLEFVELPDNCTNLKYCNVLTGV 281
A+ I ++ F++YLGI+P+I+NWS GDEFSLI E NP+++FVELPDN ++L Y N+L GV
Sbjct: 89 ADVIAKVAFKMYLGITPSITNWSPAGDEFSLILENNPLVDFVELPDNHSSLIYSNLLCGV 148
Query: 282 LRGACEMVQLDITSKFIQDQLKGDNVTELRVKFIKTIQDAIPAGED 327
LRGA EMVQ+ + +KF+QD LKGD VTE+R++FI+ I+D +PAGE+
Sbjct: 149 LRGALEMVQMAVEAKFVQDTLKGDGVTEIRMRFIRRIEDNLPAGEE 194
Score = 229 bits (583), Expect = 2e-60, Method: Compositional matrix adjust.
Identities = 108/164 (65%), Positives = 139/164 (84%), Gaps = 2/164 (1%)
Query: 1 MARQGNR-LDSKKVNSELFTLTYGALVSQLLKDYDNVEDVNKQLDRMGYNIGIRLIEDFL 59
M+RQ NR +SKK++SELFTLTYGALV+QL KDY+N EDVNKQLD+MG+NIG+RLIEDFL
Sbjct: 15 MSRQANRGTESKKMSSELFTLTYGALVTQLCKDYENDEDVNKQLDKMGFNIGVRLIEDFL 74
Query: 60 ARTQSTRCYDFKETAEKI-QLGFRIYLGISPNISNWSAGGDEFSLIFETNPMLEFVELPD 118
AR+ R +DF+ETA+ I ++ F++YLGI+P+I+NWS GDEFSLI E NP+++FVELPD
Sbjct: 75 ARSNVGRAHDFRETADVIAKVAFKMYLGITPSITNWSPAGDEFSLILENNPLVDFVELPD 134
Query: 119 NCTNLKYCNVLTGVLRGACEMVQLDITSKFIQDQLKGDNVTELR 162
N ++L Y N+L GVLRGA EMVQ+ + +KF+QD LKGD VTE+R
Sbjct: 135 NHSSLIYSNLLCGVLRGALEMVQMAVEAKFVQDTLKGDGVTEIR 178
>pdb|2C0J|A Chain A, Crystal Structure Of The Bet3-Trs33 Heterodimer
Length = 161
Score = 231 bits (588), Expect = 6e-61, Method: Compositional matrix adjust.
Identities = 107/159 (67%), Positives = 136/159 (85%), Gaps = 1/159 (0%)
Query: 163 NSELFTLTYGALVSQLLKDYDNVEDVNKQLDRMGYNIGIRLIEDFLARTQSTRCYDFKET 222
+SELFTLTYGALV+QL KDY+N EDVNKQLDRMGYNIG+RLIEDFLAR+ RC+DF+ET
Sbjct: 1 SSELFTLTYGALVTQLCKDYENDEDVNKQLDRMGYNIGVRLIEDFLARSNVGRCHDFRET 60
Query: 223 AEKI-QLGFRIYLGISPNISNWSAGGDEFSLIFETNPMLEFVELPDNCTNLKYCNVLTGV 281
A+ I ++ F++YLGI+P+I+NWS GDEFSLI E NP+++FVELPDN + L Y N+L GV
Sbjct: 61 ADVIAKVAFKMYLGITPSITNWSPAGDEFSLILENNPLVDFVELPDNHSALIYSNLLCGV 120
Query: 282 LRGACEMVQLDITSKFIQDQLKGDNVTELRVKFIKTIQD 320
LRGA EMVQ+ + +KF+QD LKGD VTE+R++FI+ I+D
Sbjct: 121 LRGALEMVQMAVEAKFVQDTLKGDGVTEIRMRFIRRIED 159
Score = 220 bits (561), Expect = 7e-58, Method: Compositional matrix adjust.
Identities = 103/150 (68%), Positives = 128/150 (85%), Gaps = 1/150 (0%)
Query: 14 NSELFTLTYGALVSQLLKDYDNVEDVNKQLDRMGYNIGIRLIEDFLARTQSTRCYDFKET 73
+SELFTLTYGALV+QL KDY+N EDVNKQLDRMGYNIG+RLIEDFLAR+ RC+DF+ET
Sbjct: 1 SSELFTLTYGALVTQLCKDYENDEDVNKQLDRMGYNIGVRLIEDFLARSNVGRCHDFRET 60
Query: 74 AEKI-QLGFRIYLGISPNISNWSAGGDEFSLIFETNPMLEFVELPDNCTNLKYCNVLTGV 132
A+ I ++ F++YLGI+P+I+NWS GDEFSLI E NP+++FVELPDN + L Y N+L GV
Sbjct: 61 ADVIAKVAFKMYLGITPSITNWSPAGDEFSLILENNPLVDFVELPDNHSALIYSNLLCGV 120
Query: 133 LRGACEMVQLDITSKFIQDQLKGDNVTELR 162
LRGA EMVQ+ + +KF+QD LKGD VTE+R
Sbjct: 121 LRGALEMVQMAVEAKFVQDTLKGDGVTEIR 150
>pdb|1WC9|A Chain A, The Crystal Structure Of Truncated Mouse Bet3p
Length = 165
Score = 229 bits (584), Expect = 2e-60, Method: Compositional matrix adjust.
Identities = 106/158 (67%), Positives = 135/158 (85%), Gaps = 1/158 (0%)
Query: 163 NSELFTLTYGALVSQLLKDYDNVEDVNKQLDRMGYNIGIRLIEDFLARTQSTRCYDFKET 222
+SELFTLTYGALV+QL KDY+N EDVNKQLDRMGYNIG+RLIEDFLAR+ RC+DF+ET
Sbjct: 8 SSELFTLTYGALVTQLCKDYENDEDVNKQLDRMGYNIGVRLIEDFLARSNVGRCHDFRET 67
Query: 223 AEKI-QLGFRIYLGISPNISNWSAGGDEFSLIFETNPMLEFVELPDNCTNLKYCNVLTGV 281
A+ I ++ F++YLGI+P+I+NWS GDEFSLI E NP+++FVELPDN + L Y N+L GV
Sbjct: 68 ADVIAKVAFKMYLGITPSITNWSPAGDEFSLILENNPLVDFVELPDNHSALIYSNLLCGV 127
Query: 282 LRGACEMVQLDITSKFIQDQLKGDNVTELRVKFIKTIQ 319
LRGA EMVQ+ + +KF+QD LKGD VTE+R++FI+ I+
Sbjct: 128 LRGALEMVQMAVEAKFVQDTLKGDGVTEIRMRFIRRIE 165
Score = 227 bits (578), Expect = 8e-60, Method: Compositional matrix adjust.
Identities = 106/155 (68%), Positives = 133/155 (85%), Gaps = 1/155 (0%)
Query: 9 DSKKVNSELFTLTYGALVSQLLKDYDNVEDVNKQLDRMGYNIGIRLIEDFLARTQSTRCY 68
+SKK++SELFTLTYGALV+QL KDY+N EDVNKQLDRMGYNIG+RLIEDFLAR+ RC+
Sbjct: 3 ESKKMSSELFTLTYGALVTQLCKDYENDEDVNKQLDRMGYNIGVRLIEDFLARSNVGRCH 62
Query: 69 DFKETAEKI-QLGFRIYLGISPNISNWSAGGDEFSLIFETNPMLEFVELPDNCTNLKYCN 127
DF+ETA+ I ++ F++YLGI+P+I+NWS GDEFSLI E NP+++FVELPDN + L Y N
Sbjct: 63 DFRETADVIAKVAFKMYLGITPSITNWSPAGDEFSLILENNPLVDFVELPDNHSALIYSN 122
Query: 128 VLTGVLRGACEMVQLDITSKFIQDQLKGDNVTELR 162
+L GVLRGA EMVQ+ + +KF+QD LKGD VTE+R
Sbjct: 123 LLCGVLRGALEMVQMAVEAKFVQDTLKGDGVTEIR 157
>pdb|2PWN|A Chain A, Crystal Structure Of Bet3 Homolog (13277653) From Mus
Musculus At 2.04 A Resolution
Length = 192
Score = 220 bits (560), Expect = 1e-57, Method: Compositional matrix adjust.
Identities = 107/161 (66%), Positives = 131/161 (81%), Gaps = 2/161 (1%)
Query: 2 ARQGNR-LDSKKVNSELFTLTYGALVSQLLKDYDNVEDVNKQLDRMGYNIGIRLIEDFLA 60
+RQ NR +SKK +SELFTLTYGALV+QL KDY+N EDVNKQLDR GYNIG+RLIEDFLA
Sbjct: 14 SRQANRGTESKKXSSELFTLTYGALVTQLCKDYENDEDVNKQLDRXGYNIGVRLIEDFLA 73
Query: 61 RTQSTRCYDFKETAEKI-QLGFRIYLGISPNISNWSAGGDEFSLIFETNPMLEFVELPDN 119
R+ RC+DF+ETA+ I ++ F+ YLGI+P+I+NWS GDEFSLI E NP+++FVELPDN
Sbjct: 74 RSNVGRCHDFRETADVIAKVAFKXYLGITPSITNWSPAGDEFSLILENNPLVDFVELPDN 133
Query: 120 CTNLKYCNVLTGVLRGACEMVQLDITSKFIQDQLKGDNVTE 160
+ L Y N+L GVLRGA E VQ + +KF+QD LKGD VTE
Sbjct: 134 HSALIYSNLLCGVLRGALEXVQXAVEAKFVQDTLKGDGVTE 174
Score = 219 bits (558), Expect = 2e-57, Method: Compositional matrix adjust.
Identities = 109/166 (65%), Positives = 137/166 (82%), Gaps = 1/166 (0%)
Query: 163 NSELFTLTYGALVSQLLKDYDNVEDVNKQLDRMGYNIGIRLIEDFLARTQSTRCYDFKET 222
+SELFTLTYGALV+QL KDY+N EDVNKQLDR GYNIG+RLIEDFLAR+ RC+DF+ET
Sbjct: 27 SSELFTLTYGALVTQLCKDYENDEDVNKQLDRXGYNIGVRLIEDFLARSNVGRCHDFRET 86
Query: 223 AEKI-QLGFRIYLGISPNISNWSAGGDEFSLIFETNPMLEFVELPDNCTNLKYCNVLTGV 281
A+ I ++ F+ YLGI+P+I+NWS GDEFSLI E NP+++FVELPDN + L Y N+L GV
Sbjct: 87 ADVIAKVAFKXYLGITPSITNWSPAGDEFSLILENNPLVDFVELPDNHSALIYSNLLCGV 146
Query: 282 LRGACEMVQLDITSKFIQDQLKGDNVTELRVKFIKTIQDAIPAGED 327
LRGA E VQ + +KF+QD LKGD VTE+R +FI+ I+D +PAGE+
Sbjct: 147 LRGALEXVQXAVEAKFVQDTLKGDGVTEIRXRFIRRIEDNLPAGEE 192
>pdb|3CUE|D Chain D, Crystal Structure Of A Trapp Subassembly Activating The
Rab Ypt1p
pdb|3CUE|E Chain E, Crystal Structure Of A Trapp Subassembly Activating The
Rab Ypt1p
pdb|3CUE|J Chain J, Crystal Structure Of A Trapp Subassembly Activating The
Rab Ypt1p
pdb|3CUE|K Chain K, Crystal Structure Of A Trapp Subassembly Activating The
Rab Ypt1p
pdb|3CUE|P Chain P, Crystal Structure Of A Trapp Subassembly Activating The
Rab Ypt1p
pdb|3CUE|Q Chain Q, Crystal Structure Of A Trapp Subassembly Activating The
Rab Ypt1p
pdb|3CUE|V Chain V, Crystal Structure Of A Trapp Subassembly Activating The
Rab Ypt1p
pdb|3CUE|W Chain W, Crystal Structure Of A Trapp Subassembly Activating The
Rab Ypt1p
Length = 193
Score = 178 bits (451), Expect = 4e-45, Method: Compositional matrix adjust.
Identities = 92/174 (52%), Positives = 123/174 (70%), Gaps = 3/174 (1%)
Query: 157 NVTELRNSELFTLTYGALVSQLLKDYD-NVEDVNKQLDRMGYNIGIRLIEDFLARTQSTR 215
N TE N+ELFTLTYG++V+QL +DY+ + VN L MGYNIG RLIEDFLART R
Sbjct: 20 NKTEKINTELFTLTYGSIVAQLCQDYERDFNKVNDHLYSMGYNIGCRLIEDFLARTALPR 79
Query: 216 CYDFKETAEKI-QLGFRIYLGISPNISNWSAGGDEFSLIFETNPMLEFVELP-DNCTNLK 273
C + +T+E + + F+I+L I+PNI+NWS D FSLI + NP+ +FVELP D +L
Sbjct: 80 CENLVKTSEVLSKCAFKIFLNITPNITNWSHNKDTFSLILDENPLADFVELPMDAMKSLW 139
Query: 274 YCNVLTGVLRGACEMVQLDITSKFIQDQLKGDNVTELRVKFIKTIQDAIPAGED 327
Y N+L GVL+G+ EMVQLD F+ D L+GD+ TE++VK + ++D IP GED
Sbjct: 140 YSNILCGVLKGSLEMVQLDCDVWFVSDILRGDSQTEIKVKLNRILKDEIPIGED 193
Score = 162 bits (410), Expect = 3e-40, Method: Compositional matrix adjust.
Identities = 82/156 (52%), Positives = 113/156 (72%), Gaps = 3/156 (1%)
Query: 10 SKKVNSELFTLTYGALVSQLLKDYD-NVEDVNKQLDRMGYNIGIRLIEDFLARTQSTRCY 68
++K+N+ELFTLTYG++V+QL +DY+ + VN L MGYNIG RLIEDFLART RC
Sbjct: 22 TEKINTELFTLTYGSIVAQLCQDYERDFNKVNDHLYSMGYNIGCRLIEDFLARTALPRCE 81
Query: 69 DFKETAEKI-QLGFRIYLGISPNISNWSAGGDEFSLIFETNPMLEFVELP-DNCTNLKYC 126
+ +T+E + + F+I+L I+PNI+NWS D FSLI + NP+ +FVELP D +L Y
Sbjct: 82 NLVKTSEVLSKCAFKIFLNITPNITNWSHNKDTFSLILDENPLADFVELPMDAMKSLWYS 141
Query: 127 NVLTGVLRGACEMVQLDITSKFIQDQLKGDNVTELR 162
N+L GVL+G+ EMVQLD F+ D L+GD+ TE++
Sbjct: 142 NILCGVLKGSLEMVQLDCDVWFVSDILRGDSQTEIK 177
>pdb|3DLS|A Chain A, Crystal Structure Of Human Pas Kinase Bound To Adp
pdb|3DLS|B Chain B, Crystal Structure Of Human Pas Kinase Bound To Adp
pdb|3DLS|C Chain C, Crystal Structure Of Human Pas Kinase Bound To Adp
pdb|3DLS|D Chain D, Crystal Structure Of Human Pas Kinase Bound To Adp
pdb|3DLS|E Chain E, Crystal Structure Of Human Pas Kinase Bound To Adp
pdb|3DLS|F Chain F, Crystal Structure Of Human Pas Kinase Bound To Adp
Length = 335
Score = 30.0 bits (66), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 35/142 (24%), Positives = 62/142 (43%), Gaps = 21/142 (14%)
Query: 1 MARQGNRLD-------SKKVNSELFTLTYGALVSQL----LKDYDNVEDVNKQLDRMGYN 49
M + G+ LD +++ L + + LVS + LKD + D+ + + +
Sbjct: 108 MEKHGSGLDLFAFIDRHPRLDEPLASYIFRQLVSAVGYLRLKDIIH-RDIKDENIVIAED 166
Query: 50 IGIRLIE----DFLARTQ--STRCYDFKETAEKIQLGFRIYLGISPNISNWSAGGDEFSL 103
I+LI+ +L R + T C + A ++ +G Y G P + WS G ++L
Sbjct: 167 FTIKLIDFGSAAYLERGKLFYTFCGTIEYCAPEVLMG-NPYRG--PELEMWSLGVTLYTL 223
Query: 104 IFETNPMLEFVELPDNCTNLKY 125
+FE NP E E + + Y
Sbjct: 224 VFEENPFCELEETVEAAIHPPY 245
Score = 28.9 bits (63), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 18/61 (29%), Positives = 28/61 (45%), Gaps = 3/61 (4%)
Query: 214 TRCYDFKETAEKIQLGFRIYLGISPNISNWSAGGDEFSLIFETNPMLEFVELPDNCTNLK 273
T C + A ++ +G Y G P + WS G ++L+FE NP E E + +
Sbjct: 188 TFCGTIEYCAPEVLMG-NPYRG--PELEMWSLGVTLYTLVFEENPFCELEETVEAAIHPP 244
Query: 274 Y 274
Y
Sbjct: 245 Y 245
>pdb|3CUE|B Chain B, Crystal Structure Of A Trapp Subassembly Activating The
Rab Ypt1p
pdb|3CUE|H Chain H, Crystal Structure Of A Trapp Subassembly Activating The
Rab Ypt1p
pdb|3CUE|N Chain N, Crystal Structure Of A Trapp Subassembly Activating The
Rab Ypt1p
pdb|3CUE|T Chain T, Crystal Structure Of A Trapp Subassembly Activating The
Rab Ypt1p
Length = 283
Score = 30.0 bits (66), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 13/32 (40%), Positives = 19/32 (59%)
Query: 25 LVSQLLKDYDNVEDVNKQLDRMGYNIGIRLIE 56
++SQL + D +L G+NIGIRL+E
Sbjct: 69 MISQLHRTCKTAGDFETKLSDYGHNIGIRLLE 100
Score = 30.0 bits (66), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 13/32 (40%), Positives = 19/32 (59%)
Query: 174 LVSQLLKDYDNVEDVNKQLDRMGYNIGIRLIE 205
++SQL + D +L G+NIGIRL+E
Sbjct: 69 MISQLHRTCKTAGDFETKLSDYGHNIGIRLLE 100
>pdb|1L3G|A Chain A, Nmr Structure Of The Dna-Binding Domain Of Cell Cycle
Protein, Mbp1(2-124) From Saccharomyces Cerevisiae
Length = 136
Score = 28.9 bits (63), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 20/62 (32%), Positives = 33/62 (53%), Gaps = 7/62 (11%)
Query: 59 LARTQSTRCYD---FKETAEKIQLGFRIYLG--ISPNISNWSAGGDEFSLIFETNPMLEF 113
A+ + TR + KET EK+Q GF Y G + NI+ A ++FS+ + P+ +F
Sbjct: 44 FAKAKRTRILEKEVLKETHEKVQGGFGKYQGTWVPLNIAKQLA--EKFSVYDQLKPLFDF 101
Query: 114 VE 115
+
Sbjct: 102 TQ 103
Score = 28.9 bits (63), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 20/62 (32%), Positives = 33/62 (53%), Gaps = 7/62 (11%)
Query: 208 LARTQSTRCYD---FKETAEKIQLGFRIYLG--ISPNISNWSAGGDEFSLIFETNPMLEF 262
A+ + TR + KET EK+Q GF Y G + NI+ A ++FS+ + P+ +F
Sbjct: 44 FAKAKRTRILEKEVLKETHEKVQGGFGKYQGTWVPLNIAKQLA--EKFSVYDQLKPLFDF 101
Query: 263 VE 264
+
Sbjct: 102 TQ 103
>pdb|4B4T|O Chain O, Near-Atomic Resolution Structural Model Of The Yeast 26s
Proteasome
Length = 393
Score = 28.9 bits (63), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 21/89 (23%), Positives = 46/89 (51%), Gaps = 15/89 (16%)
Query: 115 ELP-DNCTNLKYCNVLTGVLRGACEMVQLDITSKFIQDQ-LKGDNVTELRNSELFTLTYG 172
LP DN +L + G+L+G+ + V +T ++Q + + GD +T++++
Sbjct: 318 HLPKDNVEHLVMRAISLGLLKGSIDQVNELVTISWVQPRIISGDQITKMKD--------- 368
Query: 173 ALVSQLLKDYDNVEDVNKQLDRMGYNIGI 201
+L++ D VE + K+++ G +I +
Sbjct: 369 ----RLVEWNDQVEKLGKKMEARGQSIWV 393
>pdb|1MB1|A Chain A, Mbp1 From Saccharomyces Cerevisiae
Length = 130
Score = 28.5 bits (62), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 20/62 (32%), Positives = 33/62 (53%), Gaps = 7/62 (11%)
Query: 59 LARTQSTRCYD---FKETAEKIQLGFRIYLG--ISPNISNWSAGGDEFSLIFETNPMLEF 113
A+ + TR + KET EK+Q GF Y G + NI+ A ++FS+ + P+ +F
Sbjct: 45 FAKAKRTRILEKEVLKETHEKVQGGFGKYQGTWVPLNIAKQLA--EKFSVYDQLKPLFDF 102
Query: 114 VE 115
+
Sbjct: 103 TQ 104
Score = 28.5 bits (62), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 20/62 (32%), Positives = 33/62 (53%), Gaps = 7/62 (11%)
Query: 208 LARTQSTRCYD---FKETAEKIQLGFRIYLG--ISPNISNWSAGGDEFSLIFETNPMLEF 262
A+ + TR + KET EK+Q GF Y G + NI+ A ++FS+ + P+ +F
Sbjct: 45 FAKAKRTRILEKEVLKETHEKVQGGFGKYQGTWVPLNIAKQLA--EKFSVYDQLKPLFDF 102
Query: 263 VE 264
+
Sbjct: 103 TQ 104
>pdb|2E54|A Chain A, Crystal Structure Of Acetylornithine Aminotransferase From
Thermotoga Maritima
Length = 385
Score = 27.7 bits (60), Expect = 9.0, Method: Compositional matrix adjust.
Identities = 15/46 (32%), Positives = 26/46 (56%), Gaps = 4/46 (8%)
Query: 26 VSQLLKDYDNVEDVNKQLDRMGYNIGIRLIEDFLARTQSTRCYDFK 71
+ ++ ++YD V DV MG IGI+ E+ R +T+C++ K
Sbjct: 306 LQEMKEEYDVVADVRG----MGLMIGIQFREEVSNREVATKCFENK 347
Score = 27.7 bits (60), Expect = 9.0, Method: Compositional matrix adjust.
Identities = 15/46 (32%), Positives = 26/46 (56%), Gaps = 4/46 (8%)
Query: 175 VSQLLKDYDNVEDVNKQLDRMGYNIGIRLIEDFLARTQSTRCYDFK 220
+ ++ ++YD V DV MG IGI+ E+ R +T+C++ K
Sbjct: 306 LQEMKEEYDVVADVRG----MGLMIGIQFREEVSNREVATKCFENK 347
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.320 0.138 0.401
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 9,414,360
Number of Sequences: 62578
Number of extensions: 378938
Number of successful extensions: 835
Number of sequences better than 100.0: 19
Number of HSP's better than 100.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 8
Number of HSP's that attempted gapping in prelim test: 784
Number of HSP's gapped (non-prelim): 38
length of query: 327
length of database: 14,973,337
effective HSP length: 99
effective length of query: 228
effective length of database: 8,778,115
effective search space: 2001410220
effective search space used: 2001410220
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 52 (24.6 bits)