BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy4857
(327 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q5ZI57|TPPC3_CHICK Trafficking protein particle complex subunit 3 OS=Gallus gallus
GN=TRAPPC3 PE=2 SV=1
Length = 180
Score = 244 bits (624), Expect = 6e-64, Method: Compositional matrix adjust.
Identities = 113/166 (68%), Positives = 144/166 (86%), Gaps = 1/166 (0%)
Query: 163 NSELFTLTYGALVSQLLKDYDNVEDVNKQLDRMGYNIGIRLIEDFLARTQSTRCYDFKET 222
NSELFTLTYGALV+QL KDY+N EDVNKQLD+MGYNIG+RLIEDFLAR+ RC+DF+ET
Sbjct: 15 NSELFTLTYGALVTQLCKDYENDEDVNKQLDKMGYNIGVRLIEDFLARSNVGRCHDFRET 74
Query: 223 AEKI-QLGFRIYLGISPNISNWSAGGDEFSLIFETNPMLEFVELPDNCTNLKYCNVLTGV 281
A+ I ++ F++YLGI+P+I+NWS GGDEFSLI E NP+++FVELPDN ++L Y N+L GV
Sbjct: 75 ADVIAKIAFKMYLGITPSITNWSPGGDEFSLILENNPLVDFVELPDNHSSLIYSNLLCGV 134
Query: 282 LRGACEMVQLDITSKFIQDQLKGDNVTELRVKFIKTIQDAIPAGED 327
LRGA EMVQ+ + KF+QD LKGD+VTE+R+KFI+ I+D +PAGE+
Sbjct: 135 LRGALEMVQMAVDVKFVQDTLKGDSVTEIRMKFIRRIEDNLPAGEE 180
Score = 234 bits (596), Expect = 1e-60, Method: Compositional matrix adjust.
Identities = 111/164 (67%), Positives = 140/164 (85%), Gaps = 2/164 (1%)
Query: 1 MARQGNR-LDSKKVNSELFTLTYGALVSQLLKDYDNVEDVNKQLDRMGYNIGIRLIEDFL 59
M+RQ R +SKK+NSELFTLTYGALV+QL KDY+N EDVNKQLD+MGYNIG+RLIEDFL
Sbjct: 1 MSRQAGRGTESKKMNSELFTLTYGALVTQLCKDYENDEDVNKQLDKMGYNIGVRLIEDFL 60
Query: 60 ARTQSTRCYDFKETAEKI-QLGFRIYLGISPNISNWSAGGDEFSLIFETNPMLEFVELPD 118
AR+ RC+DF+ETA+ I ++ F++YLGI+P+I+NWS GGDEFSLI E NP+++FVELPD
Sbjct: 61 ARSNVGRCHDFRETADVIAKIAFKMYLGITPSITNWSPGGDEFSLILENNPLVDFVELPD 120
Query: 119 NCTNLKYCNVLTGVLRGACEMVQLDITSKFIQDQLKGDNVTELR 162
N ++L Y N+L GVLRGA EMVQ+ + KF+QD LKGD+VTE+R
Sbjct: 121 NHSSLIYSNLLCGVLRGALEMVQMAVDVKFVQDTLKGDSVTEIR 164
>sp|Q5U1Z2|TPPC3_RAT Trafficking protein particle complex subunit 3 OS=Rattus norvegicus
GN=Trappc3 PE=2 SV=1
Length = 180
Score = 241 bits (615), Expect = 5e-63, Method: Compositional matrix adjust.
Identities = 111/166 (66%), Positives = 142/166 (85%), Gaps = 1/166 (0%)
Query: 163 NSELFTLTYGALVSQLLKDYDNVEDVNKQLDRMGYNIGIRLIEDFLARTQSTRCYDFKET 222
+SELFTLTYGALV+QL KDY+N EDVNKQLDRMGYNIG+RLIEDFLAR+ RC+DF+ET
Sbjct: 15 SSELFTLTYGALVTQLCKDYENDEDVNKQLDRMGYNIGVRLIEDFLARSNVGRCHDFRET 74
Query: 223 AEKI-QLGFRIYLGISPNISNWSAGGDEFSLIFETNPMLEFVELPDNCTNLKYCNVLTGV 281
A+ I ++ F++YLGI+P+I+NWS GDEFSLI E NP+++FVELPDN + L Y N+L GV
Sbjct: 75 ADVIAKVAFKMYLGITPSITNWSPAGDEFSLILENNPLVDFVELPDNHSALIYSNLLCGV 134
Query: 282 LRGACEMVQLDITSKFIQDQLKGDNVTELRVKFIKTIQDAIPAGED 327
LRGA EMVQ+ + +KF+QD LKGD VTE+R++FI+ I+D +PAGE+
Sbjct: 135 LRGALEMVQMAVEAKFVQDTLKGDGVTEIRMRFIRRIEDNLPAGEE 180
Score = 233 bits (595), Expect = 1e-60, Method: Compositional matrix adjust.
Identities = 111/164 (67%), Positives = 139/164 (84%), Gaps = 2/164 (1%)
Query: 1 MARQGNR-LDSKKVNSELFTLTYGALVSQLLKDYDNVEDVNKQLDRMGYNIGIRLIEDFL 59
M+RQ NR +SKK++SELFTLTYGALV+QL KDY+N EDVNKQLDRMGYNIG+RLIEDFL
Sbjct: 1 MSRQANRGTESKKMSSELFTLTYGALVTQLCKDYENDEDVNKQLDRMGYNIGVRLIEDFL 60
Query: 60 ARTQSTRCYDFKETAEKI-QLGFRIYLGISPNISNWSAGGDEFSLIFETNPMLEFVELPD 118
AR+ RC+DF+ETA+ I ++ F++YLGI+P+I+NWS GDEFSLI E NP+++FVELPD
Sbjct: 61 ARSNVGRCHDFRETADVIAKVAFKMYLGITPSITNWSPAGDEFSLILENNPLVDFVELPD 120
Query: 119 NCTNLKYCNVLTGVLRGACEMVQLDITSKFIQDQLKGDNVTELR 162
N + L Y N+L GVLRGA EMVQ+ + +KF+QD LKGD VTE+R
Sbjct: 121 NHSALIYSNLLCGVLRGALEMVQMAVEAKFVQDTLKGDGVTEIR 164
>sp|O55013|TPPC3_MOUSE Trafficking protein particle complex subunit 3 OS=Mus musculus
GN=Trappc3 PE=1 SV=1
Length = 180
Score = 241 bits (615), Expect = 5e-63, Method: Compositional matrix adjust.
Identities = 111/166 (66%), Positives = 142/166 (85%), Gaps = 1/166 (0%)
Query: 163 NSELFTLTYGALVSQLLKDYDNVEDVNKQLDRMGYNIGIRLIEDFLARTQSTRCYDFKET 222
+SELFTLTYGALV+QL KDY+N EDVNKQLDRMGYNIG+RLIEDFLAR+ RC+DF+ET
Sbjct: 15 SSELFTLTYGALVTQLCKDYENDEDVNKQLDRMGYNIGVRLIEDFLARSNVGRCHDFRET 74
Query: 223 AEKI-QLGFRIYLGISPNISNWSAGGDEFSLIFETNPMLEFVELPDNCTNLKYCNVLTGV 281
A+ I ++ F++YLGI+P+I+NWS GDEFSLI E NP+++FVELPDN + L Y N+L GV
Sbjct: 75 ADVIAKVAFKMYLGITPSITNWSPAGDEFSLILENNPLVDFVELPDNHSALIYSNLLCGV 134
Query: 282 LRGACEMVQLDITSKFIQDQLKGDNVTELRVKFIKTIQDAIPAGED 327
LRGA EMVQ+ + +KF+QD LKGD VTE+R++FI+ I+D +PAGE+
Sbjct: 135 LRGALEMVQMAVEAKFVQDTLKGDGVTEIRMRFIRRIEDNLPAGEE 180
Score = 233 bits (595), Expect = 1e-60, Method: Compositional matrix adjust.
Identities = 111/164 (67%), Positives = 139/164 (84%), Gaps = 2/164 (1%)
Query: 1 MARQGNR-LDSKKVNSELFTLTYGALVSQLLKDYDNVEDVNKQLDRMGYNIGIRLIEDFL 59
M+RQ NR +SKK++SELFTLTYGALV+QL KDY+N EDVNKQLDRMGYNIG+RLIEDFL
Sbjct: 1 MSRQANRGTESKKMSSELFTLTYGALVTQLCKDYENDEDVNKQLDRMGYNIGVRLIEDFL 60
Query: 60 ARTQSTRCYDFKETAEKI-QLGFRIYLGISPNISNWSAGGDEFSLIFETNPMLEFVELPD 118
AR+ RC+DF+ETA+ I ++ F++YLGI+P+I+NWS GDEFSLI E NP+++FVELPD
Sbjct: 61 ARSNVGRCHDFRETADVIAKVAFKMYLGITPSITNWSPAGDEFSLILENNPLVDFVELPD 120
Query: 119 NCTNLKYCNVLTGVLRGACEMVQLDITSKFIQDQLKGDNVTELR 162
N + L Y N+L GVLRGA EMVQ+ + +KF+QD LKGD VTE+R
Sbjct: 121 NHSALIYSNLLCGVLRGALEMVQMAVEAKFVQDTLKGDGVTEIR 164
>sp|O43617|TPPC3_HUMAN Trafficking protein particle complex subunit 3 OS=Homo sapiens
GN=TRAPPC3 PE=1 SV=1
Length = 180
Score = 239 bits (609), Expect = 2e-62, Method: Compositional matrix adjust.
Identities = 109/166 (65%), Positives = 143/166 (86%), Gaps = 1/166 (0%)
Query: 163 NSELFTLTYGALVSQLLKDYDNVEDVNKQLDRMGYNIGIRLIEDFLARTQSTRCYDFKET 222
+SELFTLTYGALV+QL KDY+N EDVNKQLD+MG+NIG+RLIEDFLAR+ RC+DF+ET
Sbjct: 15 SSELFTLTYGALVTQLCKDYENDEDVNKQLDKMGFNIGVRLIEDFLARSNVGRCHDFRET 74
Query: 223 AEKI-QLGFRIYLGISPNISNWSAGGDEFSLIFETNPMLEFVELPDNCTNLKYCNVLTGV 281
A+ I ++ F++YLGI+P+I+NWS GDEFSLI E NP+++FVELPDN ++L Y N+L GV
Sbjct: 75 ADVIAKVAFKMYLGITPSITNWSPAGDEFSLILENNPLVDFVELPDNHSSLIYSNLLCGV 134
Query: 282 LRGACEMVQLDITSKFIQDQLKGDNVTELRVKFIKTIQDAIPAGED 327
LRGA EMVQ+ + +KF+QD LKGD VTE+R++FI+ I+D +PAGE+
Sbjct: 135 LRGALEMVQMAVEAKFVQDTLKGDGVTEIRMRFIRRIEDNLPAGEE 180
Score = 231 bits (590), Expect = 4e-60, Method: Compositional matrix adjust.
Identities = 109/164 (66%), Positives = 140/164 (85%), Gaps = 2/164 (1%)
Query: 1 MARQGNR-LDSKKVNSELFTLTYGALVSQLLKDYDNVEDVNKQLDRMGYNIGIRLIEDFL 59
M+RQ NR +SKK++SELFTLTYGALV+QL KDY+N EDVNKQLD+MG+NIG+RLIEDFL
Sbjct: 1 MSRQANRGTESKKMSSELFTLTYGALVTQLCKDYENDEDVNKQLDKMGFNIGVRLIEDFL 60
Query: 60 ARTQSTRCYDFKETAEKI-QLGFRIYLGISPNISNWSAGGDEFSLIFETNPMLEFVELPD 118
AR+ RC+DF+ETA+ I ++ F++YLGI+P+I+NWS GDEFSLI E NP+++FVELPD
Sbjct: 61 ARSNVGRCHDFRETADVIAKVAFKMYLGITPSITNWSPAGDEFSLILENNPLVDFVELPD 120
Query: 119 NCTNLKYCNVLTGVLRGACEMVQLDITSKFIQDQLKGDNVTELR 162
N ++L Y N+L GVLRGA EMVQ+ + +KF+QD LKGD VTE+R
Sbjct: 121 NHSSLIYSNLLCGVLRGALEMVQMAVEAKFVQDTLKGDGVTEIR 164
>sp|Q86K94|TPPC3_DICDI Trafficking protein particle complex subunit 3 OS=Dictyostelium
discoideum GN=trappc3 PE=3 SV=2
Length = 186
Score = 181 bits (460), Expect = 5e-45, Method: Compositional matrix adjust.
Identities = 91/181 (50%), Positives = 129/181 (71%), Gaps = 4/181 (2%)
Query: 151 DQLKGD--NVTELRNSELFTLTYGALVSQLLKDYDNVEDVNKQLDRMGYNIGIRLIEDFL 208
D+L D N E NSELFTLTYGALV+QL+KDY+++E VN +L++MGYNIGIRLIE+FL
Sbjct: 6 DKLGNDVFNKVEKINSELFTLTYGALVTQLIKDYEDIEQVNIKLEQMGYNIGIRLIEEFL 65
Query: 209 ARTQSTRCYDFKETAEKI-QLGFRIYLGISPNISNWSAGGDEFSLIFETNPMLEFVELPD 267
A++ RC DF ETAE I ++GF+++LG++ ++ +W A EF L E NP+++FVELPD
Sbjct: 66 AKSGIGRCSDFIETAEVIAKVGFKMFLGVNAHVGDWDANRKEFHLTIEDNPLIDFVELPD 125
Query: 268 NCTN-LKYCNVLTGVLRGACEMVQLDITSKFIQDQLKGDNVTELRVKFIKTIQDAIPAGE 326
+ L Y N+L GV+RGA EMVQ+ + F++ L D+ +E++V + + D IP G
Sbjct: 126 QYKHKLYYSNILCGVMRGALEMVQMKVKCTFVKCTLSDDSTSEIKVVLEEVLSDMIPVGY 185
Query: 327 D 327
D
Sbjct: 186 D 186
Score = 172 bits (436), Expect = 3e-42, Method: Compositional matrix adjust.
Identities = 81/154 (52%), Positives = 118/154 (76%), Gaps = 2/154 (1%)
Query: 11 KKVNSELFTLTYGALVSQLLKDYDNVEDVNKQLDRMGYNIGIRLIEDFLARTQSTRCYDF 70
+K+NSELFTLTYGALV+QL+KDY+++E VN +L++MGYNIGIRLIE+FLA++ RC DF
Sbjct: 17 EKINSELFTLTYGALVTQLIKDYEDIEQVNIKLEQMGYNIGIRLIEEFLAKSGIGRCSDF 76
Query: 71 KETAEKI-QLGFRIYLGISPNISNWSAGGDEFSLIFETNPMLEFVELPDNCTN-LKYCNV 128
ETAE I ++GF+++LG++ ++ +W A EF L E NP+++FVELPD + L Y N+
Sbjct: 77 IETAEVIAKVGFKMFLGVNAHVGDWDANRKEFHLTIEDNPLIDFVELPDQYKHKLYYSNI 136
Query: 129 LTGVLRGACEMVQLDITSKFIQDQLKGDNVTELR 162
L GV+RGA EMVQ+ + F++ L D+ +E++
Sbjct: 137 LCGVMRGALEMVQMKVKCTFVKCTLSDDSTSEIK 170
>sp|P36149|BET3_YEAST Trafficking protein particle complex subunit BET3 OS=Saccharomyces
cerevisiae (strain ATCC 204508 / S288c) GN=BET3 PE=1
SV=1
Length = 193
Score = 178 bits (451), Expect = 6e-44, Method: Compositional matrix adjust.
Identities = 92/174 (52%), Positives = 123/174 (70%), Gaps = 3/174 (1%)
Query: 157 NVTELRNSELFTLTYGALVSQLLKDYD-NVEDVNKQLDRMGYNIGIRLIEDFLARTQSTR 215
N TE N+ELFTLTYG++V+QL +DY+ + VN L MGYNIG RLIEDFLART R
Sbjct: 20 NKTEKINTELFTLTYGSIVAQLCQDYERDFNKVNDHLYSMGYNIGCRLIEDFLARTALPR 79
Query: 216 CYDFKETAEKI-QLGFRIYLGISPNISNWSAGGDEFSLIFETNPMLEFVELP-DNCTNLK 273
C + +T+E + + F+I+L I+PNI+NWS D FSLI + NP+ +FVELP D +L
Sbjct: 80 CENLVKTSEVLSKCAFKIFLNITPNITNWSHNKDTFSLILDENPLADFVELPMDAMKSLW 139
Query: 274 YCNVLTGVLRGACEMVQLDITSKFIQDQLKGDNVTELRVKFIKTIQDAIPAGED 327
Y N+L GVL+G+ EMVQLD F+ D L+GD+ TE++VK + ++D IP GED
Sbjct: 140 YSNILCGVLKGSLEMVQLDCDVWFVSDILRGDSQTEIKVKLNRILKDEIPIGED 193
Score = 162 bits (410), Expect = 3e-39, Method: Compositional matrix adjust.
Identities = 82/156 (52%), Positives = 113/156 (72%), Gaps = 3/156 (1%)
Query: 10 SKKVNSELFTLTYGALVSQLLKDYD-NVEDVNKQLDRMGYNIGIRLIEDFLARTQSTRCY 68
++K+N+ELFTLTYG++V+QL +DY+ + VN L MGYNIG RLIEDFLART RC
Sbjct: 22 TEKINTELFTLTYGSIVAQLCQDYERDFNKVNDHLYSMGYNIGCRLIEDFLARTALPRCE 81
Query: 69 DFKETAEKI-QLGFRIYLGISPNISNWSAGGDEFSLIFETNPMLEFVELP-DNCTNLKYC 126
+ +T+E + + F+I+L I+PNI+NWS D FSLI + NP+ +FVELP D +L Y
Sbjct: 82 NLVKTSEVLSKCAFKIFLNITPNITNWSHNKDTFSLILDENPLADFVELPMDAMKSLWYS 141
Query: 127 NVLTGVLRGACEMVQLDITSKFIQDQLKGDNVTELR 162
N+L GVL+G+ EMVQLD F+ D L+GD+ TE++
Sbjct: 142 NILCGVLKGSLEMVQLDCDVWFVSDILRGDSQTEIK 177
>sp|Q4KL14|TPC3L_MOUSE Trafficking protein particle complex subunit 3-like protein OS=Mus
musculus GN=Bet3l PE=2 SV=1
Length = 181
Score = 176 bits (446), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 87/164 (53%), Positives = 118/164 (71%), Gaps = 3/164 (1%)
Query: 1 MARQGN-RLDSKKVNSELFTLTYGALVSQLLKDYDNVEDVNKQLDRMGYNIGIRLIEDFL 59
M+R + R + K+N +LF LTYGALV+QL KDY+ EDVNK LD+MGYNIG RL+EDFL
Sbjct: 1 MSRPAHKRPEYHKINKDLFVLTYGALVAQLCKDYEKDEDVNKYLDKMGYNIGTRLVEDFL 60
Query: 60 ARTQSTRCYDFKETAEKI-QLGFRIYLGISPNISNWSAGGDEFSLIFETNPMLEFV-ELP 117
AR+ RC+ + E I Q+ F++YLGI+P+++ ++ +EFSLI NP+ EFV ELP
Sbjct: 61 ARSCVRRCHSYSEIINIIAQVAFKMYLGITPSVTCHNSSRNEFSLILHKNPLAEFVEELP 120
Query: 118 DNCTNLKYCNVLTGVLRGACEMVQLDITSKFIQDQLKGDNVTEL 161
+ L YCN+L G++RGA EMV L F+QD+LKGD+VTE+
Sbjct: 121 AGRSALCYCNLLCGIIRGALEMVHLAANVTFLQDRLKGDSVTEI 164
Score = 176 bits (446), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 85/160 (53%), Positives = 116/160 (72%), Gaps = 2/160 (1%)
Query: 163 NSELFTLTYGALVSQLLKDYDNVEDVNKQLDRMGYNIGIRLIEDFLARTQSTRCYDFKET 222
N +LF LTYGALV+QL KDY+ EDVNK LD+MGYNIG RL+EDFLAR+ RC+ + E
Sbjct: 15 NKDLFVLTYGALVAQLCKDYEKDEDVNKYLDKMGYNIGTRLVEDFLARSCVRRCHSYSEI 74
Query: 223 AEKI-QLGFRIYLGISPNISNWSAGGDEFSLIFETNPMLEFV-ELPDNCTNLKYCNVLTG 280
I Q+ F++YLGI+P+++ ++ +EFSLI NP+ EFV ELP + L YCN+L G
Sbjct: 75 INIIAQVAFKMYLGITPSVTCHNSSRNEFSLILHKNPLAEFVEELPAGRSALCYCNLLCG 134
Query: 281 VLRGACEMVQLDITSKFIQDQLKGDNVTELRVKFIKTIQD 320
++RGA EMV L F+QD+LKGD+VTE+ + F+K + +
Sbjct: 135 IIRGALEMVHLAANVTFLQDRLKGDSVTEIGITFLKKLDE 174
>sp|Q9P6P5|BET3_SCHPO Transport protein particle subunit bet3 OS=Schizosaccharomyces
pombe (strain 972 / ATCC 24843) GN=bet3 PE=3 SV=1
Length = 183
Score = 176 bits (446), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 87/167 (52%), Positives = 123/167 (73%), Gaps = 3/167 (1%)
Query: 163 NSELFTLTYGALVSQLLKDYDNVEDVNKQLDRMGYNIGIRLIEDFLARTQSTRCYDFKET 222
N+ELF LTYG++V+QL KD N E VN++LD+MGYNIGIRLIEDFLA+T+ RC DF+ET
Sbjct: 18 NAELFVLTYGSIVAQLCKDM-NYEKVNEELDKMGYNIGIRLIEDFLAKTEWPRCADFRET 76
Query: 223 AEKI-QLGFRIYLGISPNISNWSAGGDEFSLIFETNPMLEFVELP-DNCTNLKYCNVLTG 280
E + ++GF+++L SP IS+ S G+ F L + NP+ EFVELP D L Y N+L G
Sbjct: 77 GETVAKVGFKVFLNFSPIISSVSDDGNTFVLTLDDNPLAEFVELPADARQKLWYSNILCG 136
Query: 281 VLRGACEMVQLDITSKFIQDQLKGDNVTELRVKFIKTIQDAIPAGED 327
V+RGA EM+Q+D+ + F++D L+GD TE+RV + +++ IP G++
Sbjct: 137 VIRGALEMLQMDVDAVFLRDILRGDEHTEIRVHLKRILKEEIPPGDE 183
Score = 169 bits (428), Expect = 3e-41, Method: Compositional matrix adjust.
Identities = 85/153 (55%), Positives = 115/153 (75%), Gaps = 3/153 (1%)
Query: 12 KVNSELFTLTYGALVSQLLKDYDNVEDVNKQLDRMGYNIGIRLIEDFLARTQSTRCYDFK 71
KVN+ELF LTYG++V+QL KD N E VN++LD+MGYNIGIRLIEDFLA+T+ RC DF+
Sbjct: 16 KVNAELFVLTYGSIVAQLCKDM-NYEKVNEELDKMGYNIGIRLIEDFLAKTEWPRCADFR 74
Query: 72 ETAEKI-QLGFRIYLGISPNISNWSAGGDEFSLIFETNPMLEFVELP-DNCTNLKYCNVL 129
ET E + ++GF+++L SP IS+ S G+ F L + NP+ EFVELP D L Y N+L
Sbjct: 75 ETGETVAKVGFKVFLNFSPIISSVSDDGNTFVLTLDDNPLAEFVELPADARQKLWYSNIL 134
Query: 130 TGVLRGACEMVQLDITSKFIQDQLKGDNVTELR 162
GV+RGA EM+Q+D+ + F++D L+GD TE+R
Sbjct: 135 CGVIRGALEMLQMDVDAVFLRDILRGDEHTEIR 167
>sp|Q5T215|TPC3L_HUMAN Trafficking protein particle complex subunit 3-like protein OS=Homo
sapiens GN=BET3L PE=1 SV=1
Length = 181
Score = 174 bits (440), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 86/164 (52%), Positives = 121/164 (73%), Gaps = 3/164 (1%)
Query: 1 MARQGNRL-DSKKVNSELFTLTYGALVSQLLKDYDNVEDVNKQLDRMGYNIGIRLIEDFL 59
M+R +R + K+N +LF LTYGALV+QL KDY+ EDVN+ LD+MGY IG RL+EDFL
Sbjct: 1 MSRPAHRRPEYHKINKDLFVLTYGALVAQLCKDYEKDEDVNQYLDKMGYGIGTRLVEDFL 60
Query: 60 ARTQSTRCYDFKETAEKI-QLGFRIYLGISPNISNWSAGGDEFSLIFETNPMLEFV-ELP 117
AR+ RC+ + E + I Q+ F++YLGI+P+++ ++ +EFSLI E NP++EFV ELP
Sbjct: 61 ARSCVGRCHSYSEIIDIIAQVAFKMYLGITPSVTCNNSSKNEFSLILEKNPLVEFVEELP 120
Query: 118 DNCTNLKYCNVLTGVLRGACEMVQLDITSKFIQDQLKGDNVTEL 161
++L YCN+L G++RGA EMV L F+QD+LKGD+VTE+
Sbjct: 121 AGRSSLCYCNLLCGIIRGALEMVHLAADVTFLQDRLKGDSVTEI 164
Score = 173 bits (438), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 84/156 (53%), Positives = 117/156 (75%), Gaps = 2/156 (1%)
Query: 163 NSELFTLTYGALVSQLLKDYDNVEDVNKQLDRMGYNIGIRLIEDFLARTQSTRCYDFKET 222
N +LF LTYGALV+QL KDY+ EDVN+ LD+MGY IG RL+EDFLAR+ RC+ + E
Sbjct: 15 NKDLFVLTYGALVAQLCKDYEKDEDVNQYLDKMGYGIGTRLVEDFLARSCVGRCHSYSEI 74
Query: 223 AEKI-QLGFRIYLGISPNISNWSAGGDEFSLIFETNPMLEFV-ELPDNCTNLKYCNVLTG 280
+ I Q+ F++YLGI+P+++ ++ +EFSLI E NP++EFV ELP ++L YCN+L G
Sbjct: 75 IDIIAQVAFKMYLGITPSVTCNNSSKNEFSLILEKNPLVEFVEELPAGRSSLCYCNLLCG 134
Query: 281 VLRGACEMVQLDITSKFIQDQLKGDNVTELRVKFIK 316
++RGA EMV L F+QD+LKGD+VTE+ + F+K
Sbjct: 135 IIRGALEMVHLAADVTFLQDRLKGDSVTEIGITFLK 170
>sp|Q61IU9|TPPC3_CAEBR Probable trafficking protein particle complex subunit 3
OS=Caenorhabditis briggsae GN=CBG10062 PE=3 SV=1
Length = 181
Score = 139 bits (351), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 69/169 (40%), Positives = 110/169 (65%), Gaps = 8/169 (4%)
Query: 163 NSELFTLTYGALVSQLLKDYDNVEDVNKQLDRMGYNIGIRLIEDFLARTQST-RCYDFKE 221
++ELF LTYGA+V+++LKDY++ +DV QLD+MG+N+G RL +DFLA+ + RC D ++
Sbjct: 16 SAELFCLTYGAMVTEMLKDYEDPKDVTVQLDKMGFNMGTRLADDFLAKNANVPRCVDTRQ 75
Query: 222 TAEKI-QLGFRIYLGISPNISNWSAGGDEFSLIFETNPMLEFVELPDN--CTNLKYCNVL 278
A+ + + YLG+S S+WS+G EF + E+NP+ E V++P N L Y ++
Sbjct: 76 IADVLCRNAIPCYLGVSATASSWSSGDREFIITLESNPLTELVQVPPNLVSAGLSYSQMI 135
Query: 279 TGVLRGACEMVQLDITSKFIQDQLKGDNVTELRVKFIKTIQDAIPAGED 327
G +RGA E V + + G N TE+R++F + ++D++PAGED
Sbjct: 136 AGAIRGALEAVHFKV---YASAADSGAN-TEIRIRFDQVLKDSLPAGED 180
Score = 130 bits (326), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 63/147 (42%), Positives = 97/147 (65%), Gaps = 4/147 (2%)
Query: 2 ARQGNRLDSKKVNSELFTLTYGALVSQLLKDYDNVEDVNKQLDRMGYNIGIRLIEDFLAR 61
A + N DSKK+++ELF LTYGA+V+++LKDY++ +DV QLD+MG+N+G RL +DFLA+
Sbjct: 4 AIKQNLADSKKMSAELFCLTYGAMVTEMLKDYEDPKDVTVQLDKMGFNMGTRLADDFLAK 63
Query: 62 TQST-RCYDFKETAEKI-QLGFRIYLGISPNISNWSAGGDEFSLIFETNPMLEFVELPDN 119
+ RC D ++ A+ + + YLG+S S+WS+G EF + E+NP+ E V++P N
Sbjct: 64 NANVPRCVDTRQIADVLCRNAIPCYLGVSATASSWSSGDREFIITLESNPLTELVQVPPN 123
Query: 120 --CTNLKYCNVLTGVLRGACEMVQLDI 144
L Y ++ G +RGA E V +
Sbjct: 124 LVSAGLSYSQMIAGAIRGALEAVHFKV 150
>sp|P34605|TPPC3_CAEEL Probable trafficking protein particle complex subunit 3
OS=Caenorhabditis elegans GN=ZK1098.5 PE=1 SV=1
Length = 181
Score = 137 bits (346), Expect = 7e-32, Method: Compositional matrix adjust.
Identities = 68/169 (40%), Positives = 110/169 (65%), Gaps = 8/169 (4%)
Query: 163 NSELFTLTYGALVSQLLKDYDNVEDVNKQLDRMGYNIGIRLIEDFLARTQST-RCYDFKE 221
++ELF LTYGA+V+++LKDY++ +DV QLD+MG+N+G RL +DFLA+ + RC D ++
Sbjct: 16 SAELFCLTYGAMVTEMLKDYEDPKDVTIQLDKMGFNMGTRLADDFLAKNANVPRCVDTRQ 75
Query: 222 TAEKI-QLGFRIYLGISPNISNWSAGGDEFSLIFETNPMLEFVELPDN--CTNLKYCNVL 278
A+ + + YLGIS S+W++G EF++ E NP+ E V++P + L Y ++
Sbjct: 76 IADVLCRNAIPCYLGISATASSWTSGDREFTITLEANPLTELVQVPAHLVSAGLSYSQLI 135
Query: 279 TGVLRGACEMVQLDITSKFIQDQLKGDNVTELRVKFIKTIQDAIPAGED 327
G +RGA E V + + G N TE+R++F + ++D++PAGED
Sbjct: 136 AGAIRGALEAVHFKVYASATD---TGAN-TEIRIRFDQVLKDSLPAGED 180
Score = 128 bits (322), Expect = 5e-29, Method: Compositional matrix adjust.
Identities = 62/147 (42%), Positives = 97/147 (65%), Gaps = 4/147 (2%)
Query: 2 ARQGNRLDSKKVNSELFTLTYGALVSQLLKDYDNVEDVNKQLDRMGYNIGIRLIEDFLAR 61
A + N DSKK+++ELF LTYGA+V+++LKDY++ +DV QLD+MG+N+G RL +DFLA+
Sbjct: 4 AIKQNLADSKKMSAELFCLTYGAMVTEMLKDYEDPKDVTIQLDKMGFNMGTRLADDFLAK 63
Query: 62 TQST-RCYDFKETAEKI-QLGFRIYLGISPNISNWSAGGDEFSLIFETNPMLEFVELPDN 119
+ RC D ++ A+ + + YLGIS S+W++G EF++ E NP+ E V++P +
Sbjct: 64 NANVPRCVDTRQIADVLCRNAIPCYLGISATASSWTSGDREFTITLEANPLTELVQVPAH 123
Query: 120 --CTNLKYCNVLTGVLRGACEMVQLDI 144
L Y ++ G +RGA E V +
Sbjct: 124 LVSAGLSYSQLIAGAIRGALEAVHFKV 150
>sp|Q9P7N9|TRS31_SCHPO Transport protein particle subunit trs31 OS=Schizosaccharomyces
pombe (strain 972 / ATCC 24843) GN=trs31 PE=3 SV=1
Length = 209
Score = 43.9 bits (102), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 34/162 (20%), Positives = 74/162 (45%), Gaps = 17/162 (10%)
Query: 142 LDITSKFIQDQLKGDNVTELRNSEL----FTLTYGALVSQLLKDYDNVEDVNKQLDRMGY 197
L T+ + + N+ ++RNS++ F + L+ ++ +++ ++L+ GY
Sbjct: 17 LKSTAPLMGKSVYEQNLNKIRNSDVNLSSFAFIFSELIQRIQSQVSGIQEFEEKLNEHGY 76
Query: 198 NIGIRLIEDFLARTQSTRCYDFKETA-----EKIQLGFRIYL--GISPNISNWSAGGDEF 250
+G +L+E + R ++ + +ET + I YL + ++ DE+
Sbjct: 77 RVGQKLVELVVWRERNPK----RETRILGILQYIHSSVWKYLFGKHADSLEKSKEASDEY 132
Query: 251 SLIFETNPML-EFVELPDNCTNLKYCNVLTGVLRGACEMVQL 291
+I + NP+L +F+ +P L C L G++ G + Q
Sbjct: 133 -MIVDNNPLLNKFISVPKEMNQLNCCAYLAGIIEGFLDSAQF 173
Score = 42.7 bits (99), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 31/145 (21%), Positives = 66/145 (45%), Gaps = 13/145 (8%)
Query: 6 NRLDSKKVNSELFTLTYGALVSQLLKDYDNVEDVNKQLDRMGYNIGIRLIEDFLARTQST 65
N++ + VN F + L+ ++ +++ ++L+ GY +G +L+E + R ++
Sbjct: 34 NKIRNSDVNLSSFAFIFSELIQRIQSQVSGIQEFEEKLNEHGYRVGQKLVELVVWRERNP 93
Query: 66 RCYDFKETA-----EKIQLGFRIYL--GISPNISNWSAGGDEFSLIFETNPML-EFVELP 117
+ +ET + I YL + ++ DE+ +I + NP+L +F+ +P
Sbjct: 94 K----RETRILGILQYIHSSVWKYLFGKHADSLEKSKEASDEY-MIVDNNPLLNKFISVP 148
Query: 118 DNCTNLKYCNVLTGVLRGACEMVQL 142
L C L G++ G + Q
Sbjct: 149 KEMNQLNCCAYLAGIIEGFLDSAQF 173
>sp|O74991|POF3_SCHPO F-box/TPR repeat protein pof3 OS=Schizosaccharomyces pombe (strain
972 / ATCC 24843) GN=pof3 PE=1 SV=1
Length = 577
Score = 34.7 bits (78), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 30/107 (28%), Positives = 45/107 (42%), Gaps = 28/107 (26%)
Query: 245 AGGDEFSLIFETNPMLEFVELPDN--------------CTNLKYCNV----------LTG 280
A F IF + P LE +E+PDN C NLKY N
Sbjct: 464 ALAPHFFEIFASLPELEHLEIPDNVALQNKHAIHITDCCPNLKYVNFSNSISLDGSGFIA 523
Query: 281 VLRGACEMVQLDITSKFIQDQLKGDNVTELRVKFIK-TIQDAIPAGE 326
VLRG E+ ++DI + D + D + R K ++ T+ ++P +
Sbjct: 524 VLRGLKELKRIDIIN---CDSVSRDAIDWARSKGMQVTVASSLPNSQ 567
>sp|Q9V1H9|AROB_PYRAB 3-dehydroquinate synthase OS=Pyrococcus abyssi (strain GE5 / Orsay)
GN=aroB PE=3 SV=2
Length = 332
Score = 33.5 bits (75), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 34/129 (26%), Positives = 59/129 (45%), Gaps = 19/129 (14%)
Query: 160 ELRNSELFTLTYGAL---VSQLLKDYDNVEDVNKQLD--RMGYNIGIRLIEDFLARTQST 214
EL N + Y L V +LL+D NVE++ + D R N+ +R++E+ L +
Sbjct: 160 ELLNGMAEVIKYAILDKNVYRLLQDVKNVEEIRNREDIIRESVNVKVRVVEEDLKESGKR 219
Query: 215 RCYDFKET---------AEKIQLGFRIYLGISPNISNWSAGGDEFSLIFETNPMLEFVEL 265
R + T KI+ GF + +G+ I+ G ++ F++ ++E VE
Sbjct: 220 RILNLGHTVGHAIEKLSGYKIKHGFAVSVGL---IAAAKLGEKLYN--FDSGKVIELVER 274
Query: 266 PDNCTNLKY 274
+ T L Y
Sbjct: 275 FNLPTKLPY 283
Score = 32.7 bits (73), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 29/111 (26%), Positives = 53/111 (47%), Gaps = 16/111 (14%)
Query: 26 VSQLLKDYDNVEDVNKQLD--RMGYNIGIRLIEDFLARTQSTRCYDFKET---------A 74
V +LL+D NVE++ + D R N+ +R++E+ L + R + T
Sbjct: 178 VYRLLQDVKNVEEIRNREDIIRESVNVKVRVVEEDLKESGKRRILNLGHTVGHAIEKLSG 237
Query: 75 EKIQLGFRIYLGISPNISNWSAGGDEFSLIFETNPMLEFVELPDNCTNLKY 125
KI+ GF + +G+ I+ G ++ F++ ++E VE + T L Y
Sbjct: 238 YKIKHGFAVSVGL---IAAAKLGEKLYN--FDSGKVIELVERFNLPTKLPY 283
>sp|Q54YG5|TPPC5_DICDI Trafficking protein particle complex subunit 5 OS=Dictyostelium
discoideum GN=trappc5 PE=3 SV=1
Length = 186
Score = 32.0 bits (71), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 28/131 (21%), Positives = 58/131 (44%), Gaps = 11/131 (8%)
Query: 12 KVNSELFTLTYGALVSQLLKDYDNVEDVNKQLDRMGYNIGIRLIEDFLARTQSTRCYDFK 71
++N F + ++ ++ K+L MGY+IG RL+E R ++++ +
Sbjct: 19 EINISSFAFLFSEMIQYCQDRIKAGHELEKKLSDMGYSIGPRLLELLCVREKNSK----R 74
Query: 72 ETAEKIQLGF------RIYLGISPNISNWSAGGDEFSLIFETNPML-EFVELPDNCTNLK 124
ET L F + G + S D+ +I + N ++ +F+ LP + ++L
Sbjct: 75 ETKLLGILSFIHTTVWKSLFGKPADSLEKSTEADDEYMISDNNMVVNKFISLPKHLSSLN 134
Query: 125 YCNVLTGVLRG 135
+ G++ G
Sbjct: 135 CAAFVAGIIEG 145
Score = 32.0 bits (71), Expect = 6.9, Method: Compositional matrix adjust.
Identities = 26/106 (24%), Positives = 51/106 (48%), Gaps = 11/106 (10%)
Query: 186 EDVNKQLDRMGYNIGIRLIEDFLARTQSTRCYDFKETAEKIQLGF------RIYLGISPN 239
++ K+L MGY+IG RL+E R ++++ +ET L F + G +
Sbjct: 44 HELEKKLSDMGYSIGPRLLELLCVREKNSK----RETKLLGILSFIHTTVWKSLFGKPAD 99
Query: 240 ISNWSAGGDEFSLIFETNPML-EFVELPDNCTNLKYCNVLTGVLRG 284
S D+ +I + N ++ +F+ LP + ++L + G++ G
Sbjct: 100 SLEKSTEADDEYMISDNNMVVNKFISLPKHLSSLNCAAFVAGIIEG 145
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.320 0.138 0.401
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 116,474,669
Number of Sequences: 539616
Number of extensions: 4744574
Number of successful extensions: 11308
Number of sequences better than 100.0: 17
Number of HSP's better than 100.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 11232
Number of HSP's gapped (non-prelim): 35
length of query: 327
length of database: 191,569,459
effective HSP length: 118
effective length of query: 209
effective length of database: 127,894,771
effective search space: 26730007139
effective search space used: 26730007139
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 61 (28.1 bits)