Query psy4857
Match_columns 327
No_of_seqs 216 out of 395
Neff 4.8
Searched_HMMs 46136
Date Fri Aug 16 19:25:40 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy4857.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/4857hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG3330|consensus 100.0 2E-75 4.4E-80 509.9 10.4 170 158-327 12-183 (183)
2 KOG3330|consensus 100.0 1.9E-68 4.1E-73 466.2 7.2 158 7-164 10-169 (183)
3 PF04051 TRAPP: Transport prot 100.0 2E-37 4.4E-42 269.6 15.8 149 166-316 1-151 (152)
4 PF04051 TRAPP: Transport prot 100.0 3.1E-37 6.7E-42 268.4 14.3 145 17-162 1-148 (152)
5 KOG3315|consensus 100.0 6.9E-33 1.5E-37 245.3 11.7 147 2-150 17-169 (191)
6 PTZ00391 transport protein par 100.0 1.6E-30 3.6E-35 231.4 14.0 140 13-154 1-146 (168)
7 PTZ00391 transport protein par 100.0 1E-29 2.2E-34 226.3 14.6 152 163-318 2-160 (168)
8 KOG3315|consensus 100.0 4.7E-29 1E-33 221.0 13.2 151 158-318 24-182 (191)
9 COG5128 Transport protein part 99.9 1E-25 2.2E-30 199.9 10.7 146 11-157 38-187 (208)
10 COG5128 Transport protein part 99.9 1.7E-22 3.6E-27 179.5 11.8 152 163-318 41-200 (208)
11 KOG3316|consensus 98.6 2.6E-07 5.7E-12 81.7 8.7 125 17-147 6-145 (163)
12 KOG3316|consensus 98.5 3.7E-07 8.1E-12 80.7 8.5 127 166-298 6-149 (163)
13 PF02830 V4R: V4R domain; Int 71.3 8.9 0.00019 28.5 4.5 40 274-313 21-61 (62)
14 PF09536 DUF2378: Protein of u 62.6 32 0.00069 31.3 7.2 98 198-313 72-176 (178)
15 PF14056 DUF4250: Domain of un 56.6 9 0.00019 28.8 2.1 29 169-198 18-47 (55)
16 PF13314 DUF4083: Domain of un 50.5 43 0.00092 25.6 4.9 29 17-45 18-50 (58)
17 PF02830 V4R: V4R domain; Int 49.4 22 0.00048 26.3 3.3 36 125-160 21-57 (62)
18 PF09536 DUF2378: Protein of u 45.1 78 0.0017 28.8 6.7 84 50-148 73-163 (178)
19 PF14056 DUF4250: Domain of un 44.7 25 0.00054 26.5 2.8 27 22-49 20-47 (55)
20 COG4009 Uncharacterized protei 37.3 20 0.00042 29.3 1.4 53 144-200 25-77 (88)
21 COG5169 HSF1 Heat shock transc 36.6 39 0.00085 33.1 3.6 98 69-175 6-106 (282)
22 COG4009 Uncharacterized protei 34.7 29 0.00063 28.3 2.0 21 31-51 57-77 (88)
23 PF13314 DUF4083: Domain of un 34.6 67 0.0014 24.6 3.8 32 163-194 15-50 (58)
24 TIGR02265 Mxa_TIGR02265 Myxoco 34.1 1.7E+02 0.0037 26.8 7.1 99 196-313 71-177 (179)
25 TIGR02019 BchJ bacteriochlorop 32.3 3.5E+02 0.0076 25.0 8.9 142 155-310 37-186 (188)
26 PF07700 HNOB: Heme NO binding 32.1 3.2E+02 0.0069 24.0 8.4 111 173-301 50-169 (171)
27 smart00843 Ftsk_gamma This dom 30.8 1.1E+02 0.0025 23.5 4.6 39 21-60 6-45 (63)
28 PF10026 DUF2268: Predicted Zn 30.7 30 0.00066 31.3 1.7 19 195-213 162-180 (195)
29 KOG3901|consensus 30.4 63 0.0014 27.5 3.4 76 158-235 7-98 (109)
30 TIGR02019 BchJ bacteriochlorop 30.0 4.1E+02 0.009 24.6 9.0 112 37-157 63-182 (188)
31 PF06825 HSBP1: Heat shock fac 29.3 43 0.00093 25.1 2.0 27 24-50 10-37 (54)
32 COG4930 Predicted ATP-dependen 27.7 1.5E+02 0.0033 31.3 6.3 129 10-155 366-515 (683)
33 PF12983 DUF3867: Protein of u 25.2 87 0.0019 29.0 3.6 31 22-52 60-91 (186)
34 PF10026 DUF2268: Predicted Zn 24.9 44 0.00095 30.3 1.7 19 46-64 162-180 (195)
35 PF09397 Ftsk_gamma: Ftsk gamm 24.7 1.4E+02 0.003 23.1 4.1 37 22-59 8-45 (65)
36 COG2345 Predicted transcriptio 24.4 6.1E+02 0.013 24.0 10.0 135 164-316 78-215 (218)
37 COG4930 Predicted ATP-dependen 23.7 2.2E+02 0.0048 30.2 6.5 105 161-271 368-493 (683)
38 PF05119 Terminase_4: Phage te 23.2 64 0.0014 25.4 2.1 34 165-198 16-49 (100)
39 COG5169 HSF1 Heat shock transc 22.7 96 0.0021 30.5 3.6 59 218-278 6-65 (282)
40 TIGR02265 Mxa_TIGR02265 Myxoco 22.5 3.4E+02 0.0073 24.9 6.9 84 48-147 72-163 (179)
41 COG1719 Predicted hydrocarbon 21.2 1.6E+02 0.0034 26.1 4.4 131 164-316 26-157 (158)
No 1
>KOG3330|consensus
Probab=100.00 E-value=2e-75 Score=509.91 Aligned_cols=170 Identities=59% Similarity=1.060 Sum_probs=166.5
Q ss_pred chhhhhhhHHhhhHHHHHHHHHhhcCCHHHHHHHHHHhchhhhHHHHHHHHhhcCCCCccchHHHHHHH-HHHHHHhhCC
Q psy4857 158 VTELRNSELFTLTYGALVSQLLKDYDNVEDVNKQLDRMGYNIGIRLIEDFLARTQSTRCYDFKETAEKI-QLGFRIYLGI 236 (327)
Q Consensus 158 ~tEi~~~elf~ltYGalV~Ql~~d~e~~~evn~qL~~mGynIG~RLieefLak~~~~rc~~f~~t~e~I-k~~~KmflGi 236 (327)
++++.|+|||+|||||||+|||||||++++||+|||+||||||+|||||||||++.+||.||++|+|+| |+||||||||
T Consensus 12 ~~~k~naELFtLTYGaiV~ql~kDyed~e~Vn~qLdkMGyNiG~RLiedFLAks~vpRC~dfretaevlak~afkmyLgi 91 (183)
T KOG3330|consen 12 KSKKMNAELFTLTYGAIVTQLCKDYEDPEDVNKQLDKMGYNIGIRLIEDFLAKSNVPRCVDFRETAEVLAKVAFKMYLGI 91 (183)
T ss_pred HHHhhhhhhhhhhHHHHHHHHHHhhcCHHHHHHHHHhccchhhHHHHHHHHhhcCCchhhhHHHHHHHHHHhhhheeeec
Confidence 688999999999999999999999999999999999999999999999999999999999999999999 9999999999
Q ss_pred CCccccCCCCCCeEEEEecCCccccceeccCCC-CCCchhhhhHHHHHhhhhcccceEEEEEeeeccCCCCceEEEEEec
Q psy4857 237 SPNISNWSAGGDEFSLIFETNPMLEFVELPDNC-TNLKYCNVLTGVLRGACEMVQLDITSKFIQDQLKGDNVTELRVKFI 315 (327)
Q Consensus 237 ~a~v~~~~~~~~ef~l~~d~NPL~~FVelP~~~-~~L~ysn~lcGvIrGaLe~v~~~V~~~fv~d~l~gd~~tei~ik~~ 315 (327)
||++++|++++++|+|++|+|||++|||+|++. +.|||||+||||||||||||||.|+++|++|.||||+.|||||+|.
T Consensus 92 tpsitswss~~~efsliLe~NPL~efVe~p~d~~ssL~YsnlLcGviRGALEmV~m~~dv~f~~d~lrGd~~tEIrv~f~ 171 (183)
T KOG3330|consen 92 TPSITSWSSDGNEFSLILEDNPLVEFVEEPPDARSSLWYSNLLCGVIRGALEMVQMKVDVVFLSDTLRGDSVTEIRVRFL 171 (183)
T ss_pred ccceeeecCCCCEEEEEecCCcHHHHHHhCHHHhhhHHHHHHHHHHHHhHHHHHhhhheeeeeeehhcCCCceeeeeeHH
Confidence 999999999999999999999999999888774 7899999999999999999999999999999999999999999999
Q ss_pred hhccccCCCCCC
Q psy4857 316 KTIQDAIPAGED 327 (327)
Q Consensus 316 ~~~~~~~p~~~~ 327 (327)
++++|++|+|||
T Consensus 172 r~lkde~P~ged 183 (183)
T KOG3330|consen 172 RILKDELPAGED 183 (183)
T ss_pred HHHhhhcCCCCC
Confidence 999999999986
No 2
>KOG3330|consensus
Probab=100.00 E-value=1.9e-68 Score=466.15 Aligned_cols=158 Identities=60% Similarity=1.037 Sum_probs=153.5
Q ss_pred CcCchhhHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHhchhhhHHhHHHHHhhcCCCCccchHHHHHHH-HHHHHHhh
Q psy4857 7 RLDSKKVNSELFTLTYGALVSQLLKDYDNVEDVNKQLDRMGYNIGIRLIEDFLARTQSTRCYDFKETAEKI-QLGFRIYL 85 (327)
Q Consensus 7 ~~~~~kvn~elfaltyg~lV~ql~~d~e~~~evn~~L~~mGynIG~RlieefLar~~~~rc~~~~~t~e~I-~~~~K~fl 85 (327)
..|++|+|+|+|+||||+||+|||+|||++++||+||++||||||+|||||||||++.+||.+||+|+++| |+||||||
T Consensus 10 ~~~~~k~naELFtLTYGaiV~ql~kDyed~e~Vn~qLdkMGyNiG~RLiedFLAks~vpRC~dfretaevlak~afkmyL 89 (183)
T KOG3330|consen 10 AKKSKKMNAELFTLTYGAIVTQLCKDYEDPEDVNKQLDKMGYNIGIRLIEDFLAKSNVPRCVDFRETAEVLAKVAFKMYL 89 (183)
T ss_pred HHHHHhhhhhhhhhhHHHHHHHHHHhhcCHHHHHHHHHhccchhhHHHHHHHHhhcCCchhhhHHHHHHHHHHhhhheee
Confidence 35789999999999999999999999999999999999999999999999999999999999999999999 99999999
Q ss_pred CCCCcccccCCCCCeEEEEecCCccccceeccCC-CCCCchhhhhHHHHHhhhhcccceeEEEEeeeccCCCcchhhhhh
Q psy4857 86 GISPNISNWSAGGDEFSLIFETNPMLEFVELPDN-CTNLKYCNVLTGVLRGACEMVQLDITSKFIQDQLKGDNVTELRNS 164 (327)
Q Consensus 86 g~~a~v~~~~~~~~e~~l~~d~nPL~~FVelP~~-~~~L~ysn~lcGvirGaLe~v~~~v~~~fv~d~l~gd~~tEi~~~ 164 (327)
|+||++++|++++++|+||+|+|||++|||+|++ +++|||||+||||||||||||||.|+|+|++|.||||+.|||+++
T Consensus 90 gitpsitswss~~~efsliLe~NPL~efVe~p~d~~ssL~YsnlLcGviRGALEmV~m~~dv~f~~d~lrGd~~tEIrv~ 169 (183)
T KOG3330|consen 90 GITPSITSWSSDGNEFSLILEDNPLVEFVEEPPDARSSLWYSNLLCGVIRGALEMVQMKVDVVFLSDTLRGDSVTEIRVR 169 (183)
T ss_pred ecccceeeecCCCCEEEEEecCCcHHHHHHhCHHHhhhHHHHHHHHHHHHhHHHHHhhhheeeeeeehhcCCCceeeeee
Confidence 9999999999999999999999999999987776 588999999999999999999999999999999999999999875
No 3
>PF04051 TRAPP: Transport protein particle (TRAPP) component; InterPro: IPR007194 TRAPP plays a key role in the targeting and/or fusion of ER-to-Golgi transport vesicles with their acceptor compartment. TRAPP is a large multimeric protein that contains at least 10 subunits. This family contains many TRAPP family proteins. The Bet3 subunit is one of the better characterised TRAPP proteins and has a dimeric structure [] with hydrophobic channels. The channel entrances are located on a putative membrane-interacting surface that is distinctively flat, wide and decorated with positively charged residues. Bet3 is proposed to localise TRAPP to the Golgi [].; PDB: 2J3R_A 1WC9_A 2J3T_A 2PWN_A 2J3W_E 1WC8_A 3CUE_N 2C0J_B 3KXC_A 2CFH_A ....
Probab=100.00 E-value=2e-37 Score=269.56 Aligned_cols=149 Identities=32% Similarity=0.535 Sum_probs=135.1
Q ss_pred HHhhhHHHHHHHHHhhcCCHHHHHHHHHHhchhhhHHHHHHHHhh-cCCCCccchHHHHHHH-HHHHHHhhCCCCccccC
Q psy4857 166 LFTLTYGALVSQLLKDYDNVEDVNKQLDRMGYNIGIRLIEDFLAR-TQSTRCYDFKETAEKI-QLGFRIYLGISPNISNW 243 (327)
Q Consensus 166 lf~ltYGalV~Ql~~d~e~~~evn~qL~~mGynIG~RLieefLak-~~~~rc~~f~~t~e~I-k~~~KmflGi~a~v~~~ 243 (327)
+|+||||+||+++++ +++.+++|++|++|||+||.||+|+++.| ...+||+++.+++++| |..||++||++++..+|
T Consensus 1 ~f~~l~~e~V~~~~~-~~~~~e~~~~Le~~G~~vG~rl~E~~~~~~~~~~r~~~~~~~~~fI~k~~W~~~fgk~~d~l~~ 79 (152)
T PF04051_consen 1 AFALLFGEMVQYLLR-REDVEEVNKRLERMGYNVGQRLAERLLRRRKNSPRFTDILDILKFICKDFWKMLFGKQADNLKT 79 (152)
T ss_dssp HHHHHHHHHHHHHHH-CSSHHHHHHHHHHHHHHHHHHHHHHHHHHCSSTCSTSSHHHHHHHHHHHHHHHHHSS--SEEEE
T ss_pred CHHHHHHHHHHHHHH-hCCHHHHHHHHHHHHHHHhHHHHHHHHHHhccCcccCCHHHHHHHHHHHHHHHHhCCCCccccc
Confidence 699999999988887 77999999999999999999999999998 6889999999999999 99999999999999999
Q ss_pred CCCCCeEEEEecCCccccceeccCCCCCCchhhhhHHHHHhhhhcccceEEEEEeeeccCCCCceEEEEEech
Q psy4857 244 SAGGDEFSLIFETNPMLEFVELPDNCTNLKYCNVLTGVLRGACEMVQLDITSKFIQDQLKGDNVTELRVKFIK 316 (327)
Q Consensus 244 ~~~~~ef~l~~d~NPL~~FVelP~~~~~L~ysn~lcGvIrGaLe~v~~~V~~~fv~d~l~gd~~tei~ik~~~ 316 (327)
+.+.++|+|+.+++|+.+||++|+++++|+|++++||||||||++++++++|++..+.++| +.+.+.|||.+
T Consensus 80 n~~~~~y~i~d~~~~~~~~v~~p~~~~~l~~~~f~~GiIrGaL~~lg~~~~Vta~~~~~~~-~~~~f~Ik~~~ 151 (152)
T PF04051_consen 80 NHDRGEYVITDNDFPLNQFVSLPEEYEGLNYLAFPCGIIRGALESLGFPAEVTAESDPLNG-PQTTFQIKFEK 151 (152)
T ss_dssp ETTSTEEEEEEST-CCCTTSTTCGCGTTSHTTHHHHHHHHHHHHHTTEEEEEEEEECCCGT-TEEEEEEEEEH
T ss_pred cCCCCeEEEecCccchhhhhccchhhccCchhhhHHHHHHHHHHHCCCceEEEEEEeccCC-CCeEEEEEEec
Confidence 8878999999888999999999999999999999999999999999999999999998844 46777777765
No 4
>PF04051 TRAPP: Transport protein particle (TRAPP) component; InterPro: IPR007194 TRAPP plays a key role in the targeting and/or fusion of ER-to-Golgi transport vesicles with their acceptor compartment. TRAPP is a large multimeric protein that contains at least 10 subunits. This family contains many TRAPP family proteins. The Bet3 subunit is one of the better characterised TRAPP proteins and has a dimeric structure [] with hydrophobic channels. The channel entrances are located on a putative membrane-interacting surface that is distinctively flat, wide and decorated with positively charged residues. Bet3 is proposed to localise TRAPP to the Golgi [].; PDB: 2J3R_A 1WC9_A 2J3T_A 2PWN_A 2J3W_E 1WC8_A 3CUE_N 2C0J_B 3KXC_A 2CFH_A ....
Probab=100.00 E-value=3.1e-37 Score=268.41 Aligned_cols=145 Identities=30% Similarity=0.522 Sum_probs=132.8
Q ss_pred HHHHHHHHHHHHHHHhcCCHHHHHHHHHHhchhhhHHhHHHHHhh-cCCCCccchHHHHHHH-HHHHHHhhCCCCccccc
Q psy4857 17 LFTLTYGALVSQLLKDYDNVEDVNKQLDRMGYNIGIRLIEDFLAR-TQSTRCYDFKETAEKI-QLGFRIYLGISPNISNW 94 (327)
Q Consensus 17 lfaltyg~lV~ql~~d~e~~~evn~~L~~mGynIG~RlieefLar-~~~~rc~~~~~t~e~I-~~~~K~flg~~a~v~~~ 94 (327)
+|+|||+|||+|+++ +++.+++|++|++|||+||.||+|+++.| ...+||.++.+++.|| +..||++||++++.++|
T Consensus 1 ~f~~l~~e~V~~~~~-~~~~~e~~~~Le~~G~~vG~rl~E~~~~~~~~~~r~~~~~~~~~fI~k~~W~~~fgk~~d~l~~ 79 (152)
T PF04051_consen 1 AFALLFGEMVQYLLR-REDVEEVNKRLERMGYNVGQRLAERLLRRRKNSPRFTDILDILKFICKDFWKMLFGKQADNLKT 79 (152)
T ss_dssp HHHHHHHHHHHHHHH-CSSHHHHHHHHHHHHHHHHHHHHHHHHHHCSSTCSTSSHHHHHHHHHHHHHHHHHSS--SEEEE
T ss_pred CHHHHHHHHHHHHHH-hCCHHHHHHHHHHHHHHHhHHHHHHHHHHhccCcccCCHHHHHHHHHHHHHHHHhCCCCccccc
Confidence 699999999999998 67999999999999999999999999998 6889999999999999 99999999999999999
Q ss_pred CCCCCeEEEEecCCccccceeccCCCCCCchhhhhHHHHHhhhhcccceeEEEEeeeccCCCc-chhhh
Q psy4857 95 SAGGDEFSLIFETNPMLEFVELPDNCTNLKYCNVLTGVLRGACEMVQLDITSKFIQDQLKGDN-VTELR 162 (327)
Q Consensus 95 ~~~~~e~~l~~d~nPL~~FVelP~~~~~L~ysn~lcGvirGaLe~v~~~v~~~fv~d~l~gd~-~tEi~ 162 (327)
+.+.++|+|+.+++|+.+||++|+++++|+|++++||||||||++++++++|++..+.++|+. +.+|+
T Consensus 80 n~~~~~y~i~d~~~~~~~~v~~p~~~~~l~~~~f~~GiIrGaL~~lg~~~~Vta~~~~~~~~~~~f~Ik 148 (152)
T PF04051_consen 80 NHDRGEYVITDNDFPLNQFVSLPEEYEGLNYLAFPCGIIRGALESLGFPAEVTAESDPLNGPQTTFQIK 148 (152)
T ss_dssp ETTSTEEEEEEST-CCCTTSTTCGCGTTSHTTHHHHHHHHHHHHHTTEEEEEEEEECCCGTTEEEEEEE
T ss_pred cCCCCeEEEecCccchhhhhccchhhccCchhhhHHHHHHHHHHHCCCceEEEEEEeccCCCCeEEEEE
Confidence 887899999988899999999999999999999999999999999999999999999998873 44544
No 5
>KOG3315|consensus
Probab=100.00 E-value=6.9e-33 Score=245.34 Aligned_cols=147 Identities=16% Similarity=0.341 Sum_probs=134.2
Q ss_pred CCCCCCcCchhhHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHhchhhhHHhHHHHHhhc-CCCCccchHHHHHHH-HH
Q psy4857 2 ARQGNRLDSKKVNSELFTLTYGALVSQLLKDYDNVEDVNKQLDRMGYNIGIRLIEDFLART-QSTRCYDFKETAEKI-QL 79 (327)
Q Consensus 2 ~r~~~~~~~~kvn~elfaltyg~lV~ql~~d~e~~~evn~~L~~mGynIG~RlieefLar~-~~~rc~~~~~t~e~I-~~ 79 (327)
.|+|+++|+| ||.++||++|++||+|++.+..++.|++.+|...||+||.||+|.+..|+ +.+|.+++..++.+| ..
T Consensus 17 ~~~L~~~rtE-vslS~fA~Lfsemiqy~q~qv~tv~d~e~kL~~~G~~VG~rllel~~~rEr~~kREtkilgiL~fi~~t 95 (191)
T KOG3315|consen 17 DKSLSKGRTE-VSLSAFAFLFSEMIQYLQSQVFTVADLETKLADYGYQVGIRLLELLNFRERGQKRETKILGILQFIHST 95 (191)
T ss_pred hhhhhccCcc-ccHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhHHHHHHHHHHhhcchhHHHHHHHHHHHHHH
Confidence 5788888987 99999999999999999999999999999999999999999998666688 889999999999999 99
Q ss_pred HHHHhhCCCCcccc-cCCCCCeEEEEecCCccc-cceeccCCCCCCchhhhhHHHHHhhhhcccce--eEEEEee
Q psy4857 80 GFRIYLGISPNISN-WSAGGDEFSLIFETNPML-EFVELPDNCTNLKYCNVLTGVLRGACEMVQLD--ITSKFIQ 150 (327)
Q Consensus 80 ~~K~flg~~a~v~~-~~~~~~e~~l~~d~nPL~-~FVelP~~~~~L~ysn~lcGvirGaLe~v~~~--v~~~fv~ 150 (327)
.||.+||+.|+-++ .+++.++|+|+ |++||. .|||+|++.+.|||++|+||||+|+|+..+|+ |+||+.+
T Consensus 96 vwk~Lfgk~ad~LEka~d~~~tYmii-d~~pl~n~fISVPke~~~lnc~~fvaGIiea~L~~agfpckVTAh~~P 169 (191)
T KOG3315|consen 96 VWKYLFGKEADKLEKANDDDRTYMII-DKEPLVNTFISVPKENGTLNCAAFVAGIIEAVLDNAGFPCKVTAHWHP 169 (191)
T ss_pred HHHHHhcchHHHHHhcccccceEEEE-cCcchhhhceecccccCcccHHHHHHHHHHHHHHhCCCCCceeeeecC
Confidence 99999999996555 67789999666 999999 49999999999999999999999999996665 5588886
No 6
>PTZ00391 transport protein particle component (TRAPP) superfamily; Provisional
Probab=99.97 E-value=1.6e-30 Score=231.36 Aligned_cols=140 Identities=19% Similarity=0.349 Sum_probs=125.0
Q ss_pred hHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHhchhhhHHhHHHHHh-hc-CCCCccchHHHHHHH-HHHHHHhhCCCC
Q psy4857 13 VNSELFTLTYGALVSQLLKDYDNVEDVNKQLDRMGYNIGIRLIEDFLA-RT-QSTRCYDFKETAEKI-QLGFRIYLGISP 89 (327)
Q Consensus 13 vn~elfaltyg~lV~ql~~d~e~~~evn~~L~~mGynIG~RlieefLa-r~-~~~rc~~~~~t~e~I-~~~~K~flg~~a 89 (327)
||+++|+++|+|||+|.+++.++++|++++|++|||+||.||+| .+. |+ ..+|.++..+++.|| +..||.+||+++
T Consensus 1 vslsafafLf~EmV~y~~~~~~~~~ele~rL~~~G~~VG~rllE-~l~~r~~~~~R~~~~L~iLkFI~~~~W~~lFgk~a 79 (168)
T PTZ00391 1 VSLSSFAFLFSEIVQYCLSKSKRGYRLEDKLHEMGLRVGYKLNE-LLPYREKNQKRETKILSILTFISKHVWKYLFGHSS 79 (168)
T ss_pred CCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHhHHHhHHHHH-HHHHhccCCCccchHHHHHHHHHHHHHHHHhCchh
Confidence 68999999999999999988899999999999999999999997 555 76 578999999999999 999999999999
Q ss_pred cccccCCCCCeEEEEecCCccc-cceeccCCCCCCchhhhhHHHHHhhhhcccceeE--EEEeeeccC
Q psy4857 90 NISNWSAGGDEFSLIFETNPML-EFVELPDNCTNLKYCNVLTGVLRGACEMVQLDIT--SKFIQDQLK 154 (327)
Q Consensus 90 ~v~~~~~~~~e~~l~~d~nPL~-~FVelP~~~~~L~ysn~lcGvirGaLe~v~~~v~--~~fv~d~l~ 154 (327)
+.++.+++.++|+|+ |++|+. .|+++|+++++++|++|.||||||||+.++++++ ||++++.-.
T Consensus 80 D~Lkt~d~~~~Y~i~-Dn~~~~~~~iS~p~~~~~~~~~aF~~GII~G~L~~~Gf~a~VTA~~~~~~~~ 146 (168)
T PTZ00391 80 DLLKSQDSDDEYMIN-DKNLLLNKFISVPKDLGHINCAAFAAGIVEGILCSAEFPANVTAHTVEDTPK 146 (168)
T ss_pred hhhcccCCCCeEEEE-eCchhheeeeeccccccccchhhhhHHHHHHHHhhCCCCcEEEEEeccCCCC
Confidence 988555678999776 999998 5999999999999999999999999999666655 777665543
No 7
>PTZ00391 transport protein particle component (TRAPP) superfamily; Provisional
Probab=99.97 E-value=1e-29 Score=226.29 Aligned_cols=152 Identities=19% Similarity=0.357 Sum_probs=137.3
Q ss_pred hhhHHhhhHHHHHHHHHhhcC-CHHHHHHHHHHhchhhhHHHHHHHHh-hc-CCCCccchHHHHHHH-HHHHHHhhCCCC
Q psy4857 163 NSELFTLTYGALVSQLLKDYD-NVEDVNKQLDRMGYNIGIRLIEDFLA-RT-QSTRCYDFKETAEKI-QLGFRIYLGISP 238 (327)
Q Consensus 163 ~~elf~ltYGalV~Ql~~d~e-~~~evn~qL~~mGynIG~RLieefLa-k~-~~~rc~~f~~t~e~I-k~~~KmflGi~a 238 (327)
+.+.|+++|.+|| |++++.. +++|++++|++|||+||.||+| .+. |+ +.+|.++..+++.|| +..||.+||+++
T Consensus 2 slsafafLf~EmV-~y~~~~~~~~~ele~rL~~~G~~VG~rllE-~l~~r~~~~~R~~~~L~iLkFI~~~~W~~lFgk~a 79 (168)
T PTZ00391 2 SLSSFAFLFSEIV-QYCLSKSKRGYRLEDKLHEMGLRVGYKLNE-LLPYREKNQKRETKILSILTFISKHVWKYLFGHSS 79 (168)
T ss_pred CHHHHHHHHHHHH-HHHHhcCCcHHHHHHHHHHHhHHHhHHHHH-HHHHhccCCCccchHHHHHHHHHHHHHHHHhCchh
Confidence 6789999999999 8888887 8899999999999999999995 888 66 578999999999999 999999999999
Q ss_pred ccccCCCCCCeEEEEecCCcccc-ceeccCCCCCCchhhhhHHHHHhhhhcccce--EEEEEeeeccCCCCceEEEEEec
Q psy4857 239 NISNWSAGGDEFSLIFETNPMLE-FVELPDNCTNLKYCNVLTGVLRGACEMVQLD--ITSKFIQDQLKGDNVTELRVKFI 315 (327)
Q Consensus 239 ~v~~~~~~~~ef~l~~d~NPL~~-FVelP~~~~~L~ysn~lcGvIrGaLe~v~~~--V~~~fv~d~l~gd~~tei~ik~~ 315 (327)
+..+.+++.++|+|+ |++|+.. |+++|+++++++|+++.||||||||..++++ |+||++++.-. ..+|+|.|||.
T Consensus 80 D~Lkt~d~~~~Y~i~-Dn~~~~~~~iS~p~~~~~~~~~aF~~GII~G~L~~~Gf~a~VTA~~~~~~~~-~~~t~~likf~ 157 (168)
T PTZ00391 80 DLLKSQDSDDEYMIN-DKNLLLNKFISVPKDLGHINCAAFAAGIVEGILCSAEFPANVTAHTVEDTPK-NFSTTILIKFY 157 (168)
T ss_pred hhhcccCCCCeEEEE-eCchhheeeeeccccccccchhhhhHHHHHHHHhhCCCCcEEEEEeccCCCC-CCceEEEEEec
Confidence 888666778999877 9999995 9999999999999999999999999999666 99999876654 55999999999
Q ss_pred hhc
Q psy4857 316 KTI 318 (327)
Q Consensus 316 ~~~ 318 (327)
+..
T Consensus 158 ~~v 160 (168)
T PTZ00391 158 PEV 160 (168)
T ss_pred HHH
Confidence 764
No 8
>KOG3315|consensus
Probab=99.96 E-value=4.7e-29 Score=221.04 Aligned_cols=151 Identities=21% Similarity=0.450 Sum_probs=138.7
Q ss_pred chhhhhhhHHhhhHHHHHHHHHhhcC-CHHHHHHHHHHhchhhhHHHHHHHHh-hc-CCCCccchHHHHHHH-HHHHHHh
Q psy4857 158 VTELRNSELFTLTYGALVSQLLKDYD-NVEDVNKQLDRMGYNIGIRLIEDFLA-RT-QSTRCYDFKETAEKI-QLGFRIY 233 (327)
Q Consensus 158 ~tEi~~~elf~ltYGalV~Ql~~d~e-~~~evn~qL~~mGynIG~RLieefLa-k~-~~~rc~~f~~t~e~I-k~~~Kmf 233 (327)
++|+ +.+.||+.|++|| |+++... ++.|++.+|...||+||+||+| .+. |+ +.+|.+++.+++.+| ...||.+
T Consensus 24 rtEv-slS~fA~Lfsemi-qy~q~qv~tv~d~e~kL~~~G~~VG~rlle-l~~~rEr~~kREtkilgiL~fi~~tvwk~L 100 (191)
T KOG3315|consen 24 RTEV-SLSAFAFLFSEMI-QYLQSQVFTVADLETKLADYGYQVGIRLLE-LLNFRERGQKRETKILGILQFIHSTVWKYL 100 (191)
T ss_pred Cccc-cHHHHHHHHHHHH-HHHHHhcccHHHHHHHHHHHHHHHhHHHHH-HHHHHhhcchhHHHHHHHHHHHHHHHHHHH
Confidence 4788 8999999999999 9999995 8999999999999999999996 666 87 889999999999999 9999999
Q ss_pred hCCCC-ccccCCCCCCeEEEEecCCcccc-ceeccCCCCCCchhhhhHHHHHhhhhcccce--EEEEEeeeccCCCCceE
Q psy4857 234 LGISP-NISNWSAGGDEFSLIFETNPMLE-FVELPDNCTNLKYCNVLTGVLRGACEMVQLD--ITSKFIQDQLKGDNVTE 309 (327)
Q Consensus 234 lGi~a-~v~~~~~~~~ef~l~~d~NPL~~-FVelP~~~~~L~ysn~lcGvIrGaLe~v~~~--V~~~fv~d~l~gd~~te 309 (327)
||+.| .+.+.++++++|+|+ |++||.+ |+++|++.+.|||++++||||.|+|+..+++ |||||.+ .| |.
T Consensus 101 fgk~ad~LEka~d~~~tYmii-d~~pl~n~fISVPke~~~lnc~~fvaGIiea~L~~agfpckVTAh~~P---~g---t~ 173 (191)
T KOG3315|consen 101 FGKEADKLEKANDDDRTYMII-DKEPLVNTFISVPKENGTLNCAAFVAGIIEAVLDNAGFPCKVTAHWHP---EG---TT 173 (191)
T ss_pred hcchHHHHHhcccccceEEEE-cCcchhhhceecccccCcccHHHHHHHHHHHHHHhCCCCCceeeeecC---CC---Ce
Confidence 99999 566688999999766 9999995 9999999999999999999999999999887 9999998 33 99
Q ss_pred EEEEechhc
Q psy4857 310 LRVKFIKTI 318 (327)
Q Consensus 310 i~ik~~~~~ 318 (327)
++|||.+.+
T Consensus 174 ~~IkF~~~V 182 (191)
T KOG3315|consen 174 YLIKFDESV 182 (191)
T ss_pred EEEEecHHH
Confidence 999998754
No 9
>COG5128 Transport protein particle (TRAPP) complex subunit [Intracellular trafficking and secretion]
Probab=99.93 E-value=1e-25 Score=199.88 Aligned_cols=146 Identities=16% Similarity=0.326 Sum_probs=129.0
Q ss_pred hhhHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHhchhhhHHhHHHHHhhc-CCCCccchHHHHHHH-HHHHHHhhCCC
Q psy4857 11 KKVNSELFTLTYGALVSQLLKDYDNVEDVNKQLDRMGYNIGIRLIEDFLART-QSTRCYDFKETAEKI-QLGFRIYLGIS 88 (327)
Q Consensus 11 ~kvn~elfaltyg~lV~ql~~d~e~~~evn~~L~~mGynIG~RlieefLar~-~~~rc~~~~~t~e~I-~~~~K~flg~~ 88 (327)
..||.+.+||+|.+|++|+......+.|.|.+|...||+||+||+|....|. +.+|..++..++++| ...|+++||..
T Consensus 38 ~ev~lStmaflf~emI~~l~~q~s~~~dfE~kL~~~Gy~vGikLlEL~nfr~rnpkre~rIl~iLq~ih~~lwsylf~~~ 117 (208)
T COG5128 38 REVPLSTMAFLFCEMIEYLMEQRSGIQDFEAKLKSIGYEVGIKLLELCNFRRRNPKREVRILTILQRIHFDLWSYLFGDS 117 (208)
T ss_pred ccCchHHHHHHHHHHHHHHHHHhhhhHhHHHHHHHhhHHHHHHHHHHHHHhhhCccchhhHHHHHHHHHHHHHHHHhccc
Confidence 3499999999999999999999999999999999999999999997555566 788999999999999 99999999999
Q ss_pred Ccccc-cCCCCCeEEEEecCCccc-cceeccCCCCCCchhhhhHHHHHhhhhcccceeEEEEeeeccCCCc
Q psy4857 89 PNISN-WSAGGDEFSLIFETNPML-EFVELPDNCTNLKYCNVLTGVLRGACEMVQLDITSKFIQDQLKGDN 157 (327)
Q Consensus 89 a~v~~-~~~~~~e~~l~~d~nPL~-~FVelP~~~~~L~ysn~lcGvirGaLe~v~~~v~~~fv~d~l~gd~ 157 (327)
++..+ ..+.++||||+ |+|||- +||++|++..+|+|.+++||||.|+|...||+++|+--+..+.+..
T Consensus 118 ~d~leKs~e~d~eYmiv-Dn~plls~FIsvP~E~n~lsc~~~vcGiI~gfL~~agfpc~vtAh~~P~~~~p 187 (208)
T COG5128 118 DDRLEKSREVDREYMIV-DNDPLLSRFISVPDEWNGLSCDSIVCGIIQGFLMAAGFPCEVTAHPEPSENLP 187 (208)
T ss_pred hHHHHHhhhcCceeEEe-cCchHHHHHhcCcchhcCcchHHHHHHHHHHHHHhcCCCCcceeccCcccCCC
Confidence 96655 56668999766 999988 6999999999999999999999999999998888665455555543
No 10
>COG5128 Transport protein particle (TRAPP) complex subunit [Intracellular trafficking and secretion]
Probab=99.88 E-value=1.7e-22 Score=179.51 Aligned_cols=152 Identities=16% Similarity=0.370 Sum_probs=133.9
Q ss_pred hhhHHhhhHHHHHHHHHhhcCCHHHHHHHHHHhchhhhHHHHHHHHh-hc-CCCCccchHHHHHHH-HHHHHHhhCCCC-
Q psy4857 163 NSELFTLTYGALVSQLLKDYDNVEDVNKQLDRMGYNIGIRLIEDFLA-RT-QSTRCYDFKETAEKI-QLGFRIYLGISP- 238 (327)
Q Consensus 163 ~~elf~ltYGalV~Ql~~d~e~~~evn~qL~~mGynIG~RLieefLa-k~-~~~rc~~f~~t~e~I-k~~~KmflGi~a- 238 (327)
+.+.||+.|.+++.||.+....+.+.+.+|...||+||+||+| .+. |. +.+|..++.++++.| ...|+.+||.++
T Consensus 41 ~lStmaflf~emI~~l~~q~s~~~dfE~kL~~~Gy~vGikLlE-L~nfr~rnpkre~rIl~iLq~ih~~lwsylf~~~~d 119 (208)
T COG5128 41 PLSTMAFLFCEMIEYLMEQRSGIQDFEAKLKSIGYEVGIKLLE-LCNFRRRNPKREVRILTILQRIHFDLWSYLFGDSDD 119 (208)
T ss_pred chHHHHHHHHHHHHHHHHHhhhhHhHHHHHHHhhHHHHHHHHH-HHHHhhhCccchhhHHHHHHHHHHHHHHHHhccchH
Confidence 6678999999999777777778999999999999999999995 777 55 788999999999999 999999999999
Q ss_pred ccccCCCCCCeEEEEecCCccc-cceeccCCCCCCchhhhhHHHHHhhhhcccce--EEEEEeeeccCCCC-ceEEEEEe
Q psy4857 239 NISNWSAGGDEFSLIFETNPML-EFVELPDNCTNLKYCNVLTGVLRGACEMVQLD--ITSKFIQDQLKGDN-VTELRVKF 314 (327)
Q Consensus 239 ~v~~~~~~~~ef~l~~d~NPL~-~FVelP~~~~~L~ysn~lcGvIrGaLe~v~~~--V~~~fv~d~l~gd~-~tei~ik~ 314 (327)
++.+..+.++||+|+ |+|||- .|+++|++..+|+|..++||+|.|+|..++++ |+|| +..+.+.+ +|.++|++
T Consensus 120 ~leKs~e~d~eYmiv-Dn~plls~FIsvP~E~n~lsc~~~vcGiI~gfL~~agfpc~vtAh--~~P~~~~p~Rtv~lI~~ 196 (208)
T COG5128 120 RLEKSREVDREYMIV-DNDPLLSRFISVPDEWNGLSCDSIVCGIIQGFLMAAGFPCEVTAH--PEPSENLPNRTVFLIRI 196 (208)
T ss_pred HHHHhhhcCceeEEe-cCchHHHHHhcCcchhcCcchHHHHHHHHHHHHHhcCCCCcceec--cCcccCCCcceEEEEEe
Confidence 566688888999777 999998 69999999999999999999999999999998 5666 44455554 89999999
Q ss_pred chhc
Q psy4857 315 IKTI 318 (327)
Q Consensus 315 ~~~~ 318 (327)
.+..
T Consensus 197 d~~v 200 (208)
T COG5128 197 DDLV 200 (208)
T ss_pred cHHH
Confidence 8654
No 11
>KOG3316|consensus
Probab=98.57 E-value=2.6e-07 Score=81.66 Aligned_cols=125 Identities=16% Similarity=0.217 Sum_probs=88.9
Q ss_pred HHHHHHHHHHHHHHHhcC-C---------HHHHHHHHHHhchhhhHHhHHHHHhhcCCCCccchHHHHHHH-HHHHHHhh
Q psy4857 17 LFTLTYGALVSQLLKDYD-N---------VEDVNKQLDRMGYNIGIRLIEDFLARTQSTRCYDFKETAEKI-QLGFRIYL 85 (327)
Q Consensus 17 lfaltyg~lV~ql~~d~e-~---------~~evn~~L~~mGynIG~RlieefLar~~~~rc~~~~~t~e~I-~~~~K~fl 85 (327)
+|-++--+||... .+++ | -.....+|+.|||.||.+|+| -|.|+.. |..+-.|+..|| |..|+..|
T Consensus 6 ~f~~Lh~EmV~~~-~~~e~d~e~g~~~~~k~~~~~~LE~IGFqVG~~L~E-rl~~e~~-rf~deLeimKFiCkDfW~~VF 82 (163)
T KOG3316|consen 6 LFDFLHNEMVHTA-LRSEEDSENGRASIEKSHDLARLESIGFQVGRKLSE-RLTRERN-RFKDELEIMKFICKDFWSIVF 82 (163)
T ss_pred HHHHHHHHHHHHH-HHhcchhhcccccccchHHHHHHHHhhhHHHHHHHH-HHhhhhh-hHHHHHHHHHHHHHHHHHHHH
Confidence 4888999999554 4552 2 133677999999999999996 6666533 777778889999 99999999
Q ss_pred CCCCcccccCCCCCeEEEEecCCccccceeccCC--C--CCCchhhhhHHHHHhhhhcccceeEEE
Q psy4857 86 GISPNISNWSAGGDEFSLIFETNPMLEFVELPDN--C--TNLKYCNVLTGVLRGACEMVQLDITSK 147 (327)
Q Consensus 86 g~~a~v~~~~~~~~e~~l~~d~nPL~~FVelP~~--~--~~L~ysn~lcGvirGaLe~v~~~v~~~ 147 (327)
+++-|.+. +...-.|.+. |+ -..-+-+.|+. + .---|-+|-||+|||+|-.++++..|.
T Consensus 83 ~KQiDNLr-TNhrG~yVlq-D~-~Fr~l~~~s~G~~~~~~a~~flaFpcGliRGvLs~LGi~siVt 145 (163)
T KOG3316|consen 83 KKQIDNLR-TNHRGTYVLQ-DN-KFRWLTSMSPGTQYLEEAPKFLAFPCGLIRGVLSNLGISSIVT 145 (163)
T ss_pred hhhhhhcc-ccCCceEEEe-cC-ceeeeeecCchhHHHHhcCCeEEeehhHHHHHHhhCCCceEEe
Confidence 99987654 4445567565 33 12222233322 1 223788999999999999998887643
No 12
>KOG3316|consensus
Probab=98.53 E-value=3.7e-07 Score=80.70 Aligned_cols=127 Identities=17% Similarity=0.241 Sum_probs=90.0
Q ss_pred HHhhhHHHHHHHHHhhcC-C-------H--HHHHHHHHHhchhhhHHHHHHHHhhcCCCCccchHHHHHHH-HHHHHHhh
Q psy4857 166 LFTLTYGALVSQLLKDYD-N-------V--EDVNKQLDRMGYNIGIRLIEDFLARTQSTRCYDFKETAEKI-QLGFRIYL 234 (327)
Q Consensus 166 lf~ltYGalV~Ql~~d~e-~-------~--~evn~qL~~mGynIG~RLieefLak~~~~rc~~f~~t~e~I-k~~~Kmfl 234 (327)
+|-++--+|| .++.++| | . ...-.+|+.|||.||.+|+| -|.++.. |..+-.|+..|| |.-|+..|
T Consensus 6 ~f~~Lh~EmV-~~~~~~e~d~e~g~~~~~k~~~~~~LE~IGFqVG~~L~E-rl~~e~~-rf~deLeimKFiCkDfW~~VF 82 (163)
T KOG3316|consen 6 LFDFLHNEMV-HTALRSEEDSENGRASIEKSHDLARLESIGFQVGRKLSE-RLTRERN-RFKDELEIMKFICKDFWSIVF 82 (163)
T ss_pred HHHHHHHHHH-HHHHHhcchhhcccccccchHHHHHHHHhhhHHHHHHHH-HHhhhhh-hHHHHHHHHHHHHHHHHHHHH
Confidence 4667777788 5555663 2 1 23677999999999999996 7776544 888888999999 99999999
Q ss_pred CCCCccccCCCCCCeEEEEecCCccccceeccCCC----CCCchhhhhHHHHHhhhhcccce--EEEEEe
Q psy4857 235 GISPNISNWSAGGDEFSLIFETNPMLEFVELPDNC----TNLKYCNVLTGVLRGACEMVQLD--ITSKFI 298 (327)
Q Consensus 235 Gi~a~v~~~~~~~~ef~l~~d~NPL~~FVelP~~~----~~L~ysn~lcGvIrGaLe~v~~~--V~~~fv 298 (327)
+++-+...-+. .-.|.|. +|-..-+-+.|+-- .--.|-++-||+|||+|..++++ |+|.+.
T Consensus 83 ~KQiDNLrTNh-rG~yVlq--D~~Fr~l~~~s~G~~~~~~a~~flaFpcGliRGvLs~LGi~siVtA~v~ 149 (163)
T KOG3316|consen 83 KKQIDNLRTNH-RGTYVLQ--DNKFRWLTSMSPGTQYLEEAPKFLAFPCGLIRGVLSNLGISSIVTASVS 149 (163)
T ss_pred hhhhhhccccC-CceEEEe--cCceeeeeecCchhHHHHhcCCeEEeehhHHHHHHhhCCCceEEeeecC
Confidence 99987766433 3446444 33333333444321 22378899999999999999887 666543
No 13
>PF02830 V4R: V4R domain; InterPro: IPR004096 Central cellular functions such as metabolism, solute transport and signal transduction are regulated, in part, via binding of small molecules by specialised domains. The 4-vinyl reductase (4VR) domain is a predicted small molecular binding domain, that may bind to hydrocarbons []. Proteins that contain this domain include a regulator of the phenol catabolic pathway and a protein involved in chlorophyll biosynthesis.; PDB: 2OSD_A 2OSO_A.
Probab=71.34 E-value=8.9 Score=28.48 Aligned_cols=40 Identities=20% Similarity=0.310 Sum_probs=31.8
Q ss_pred hhhhhHHHHHhhhhcc-cceEEEEEeeeccCCCCceEEEEE
Q psy4857 274 YCNVLTGVLRGACEMV-QLDITSKFIQDQLKGDNVTELRVK 313 (327)
Q Consensus 274 ysn~lcGvIrGaLe~v-~~~V~~~fv~d~l~gd~~tei~ik 313 (327)
-+++.+|++.|+++.+ +-+++++=++-.-+||+.=++.|+
T Consensus 21 ~C~~~~G~~~G~~~~~~~~~~~v~E~~C~a~G~~~C~F~i~ 61 (62)
T PF02830_consen 21 VCWFTAGYLAGFFSALFGKEVEVEETKCQAMGDDHCEFVIR 61 (62)
T ss_dssp --HHHHHHHHHHHHHHHSSEEEEEEEE-GGGT-SSEEEEEE
T ss_pred eEHHHHHHHHHHHHHHhCCceEEEEeEEEcCCCCeeEEEEE
Confidence 3579999999999887 777999989999999998888775
No 14
>PF09536 DUF2378: Protein of unknown function (DUF2378); InterPro: IPR011751 This family consists of a set of at least 17 paralogous proteins in Myxococcus xanthus (strain DK 1622). Members are about 200 amino acids in length. No other homologs are known; the function is unknown.
Probab=62.56 E-value=32 Score=31.33 Aligned_cols=98 Identities=20% Similarity=0.283 Sum_probs=59.4
Q ss_pred hhhHHHHHHHHh----hc--CCCCccchHHHHHHHHHHHHHhhCCCCccccCCCCCCeEEEEecCCccccceeccCCCCC
Q psy4857 198 NIGIRLIEDFLA----RT--QSTRCYDFKETAEKIQLGFRIYLGISPNISNWSAGGDEFSLIFETNPMLEFVELPDNCTN 271 (327)
Q Consensus 198 nIG~RLieefLa----k~--~~~rc~~f~~t~e~Ik~~~KmflGi~a~v~~~~~~~~ef~l~~d~NPL~~FVelP~~~~~ 271 (327)
-+|.|.+++|+. |+ ..-+=.+=+-+++-+..+|++--+....-..|. ..+++.|.+.+.+.
T Consensus 72 ~lG~~~v~gf~~T~~Gr~~~~l~~~~gP~R~L~r~p~~~ra~~ny~e~~~~~~-G~~~~rl~~~~~~~------------ 138 (178)
T PF09536_consen 72 RLGRRFVEGFFETLVGRALLGLARLGGPRRLLERAPRSYRAGVNYGERRVEWL-GPRSARLRMNRDFM------------ 138 (178)
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHhcCCHHHHHHHhhHHhhhccCcceeEEEEe-CCceEEEEEecCCC------------
Confidence 457899999964 32 111111224555666667776666555333454 34677788765542
Q ss_pred CchhhhhHHHHHhhhhcccce-EEEEEeeeccCCCCceEEEEE
Q psy4857 272 LKYCNVLTGVLRGACEMVQLD-ITSKFIQDQLKGDNVTELRVK 313 (327)
Q Consensus 272 L~ysn~lcGvIrGaLe~v~~~-V~~~fv~d~l~gd~~tei~ik 313 (327)
.-.+.+|+++++|++++.+ ++++-. -+|.+.++.+|.
T Consensus 139 --~p~f~~G~l~~~L~~~Ga~~~~V~~~---~~~~~~~~y~i~ 176 (178)
T PF09536_consen 139 --PPAFHEGVLEAALEAAGARGPRVRVR---ERGGDDAEYRIR 176 (178)
T ss_pred --ChHHHHHHHHHHHHHcCCCCCEEEEE---ecCCCceEEEEE
Confidence 2237789999999999887 665532 333446777664
No 15
>PF14056 DUF4250: Domain of unknown function (DUF4250)
Probab=56.63 E-value=9 Score=28.84 Aligned_cols=29 Identities=34% Similarity=0.680 Sum_probs=25.3
Q ss_pred hhHHHHHHHHHhhcC-CHHHHHHHHHHhchh
Q psy4857 169 LTYGALVSQLLKDYD-NVEDVNKQLDRMGYN 198 (327)
Q Consensus 169 ltYGalV~Ql~~d~e-~~~evn~qL~~mGyn 198 (327)
..|+++= .||.+++ +.+++.++|..+||.
T Consensus 18 D~~~sLd-~Lc~~~~id~~~l~~kL~~~Gy~ 47 (55)
T PF14056_consen 18 DEYSSLD-ELCYDYDIDKEELEEKLASIGYE 47 (55)
T ss_pred hccCCHH-HHHHHhCCCHHHHHHHHHHcCCe
Confidence 3577775 9999999 999999999999984
No 16
>PF13314 DUF4083: Domain of unknown function (DUF4083)
Probab=50.54 E-value=43 Score=25.63 Aligned_cols=29 Identities=24% Similarity=0.610 Sum_probs=21.6
Q ss_pred HHHHHHHHHHHHHHHhc----CCHHHHHHHHHH
Q psy4857 17 LFTLTYGALVSQLLKDY----DNVEDVNKQLDR 45 (327)
Q Consensus 17 lfaltyg~lV~ql~~d~----e~~~evn~~L~~ 45 (327)
+|.+.|+-+++.++..- ++...+|++||+
T Consensus 18 l~~~~Ftl~IRri~~~s~~kkq~~~~~eqKLDr 50 (58)
T PF13314_consen 18 LFGASFTLFIRRILINSNAKKQDVDSMEQKLDR 50 (58)
T ss_pred HHHHHHHHHHHHHHHhccccccchhHHHHHHHH
Confidence 45666777777777663 466799999997
No 17
>PF02830 V4R: V4R domain; InterPro: IPR004096 Central cellular functions such as metabolism, solute transport and signal transduction are regulated, in part, via binding of small molecules by specialised domains. The 4-vinyl reductase (4VR) domain is a predicted small molecular binding domain, that may bind to hydrocarbons []. Proteins that contain this domain include a regulator of the phenol catabolic pathway and a protein involved in chlorophyll biosynthesis.; PDB: 2OSD_A 2OSO_A.
Probab=49.43 E-value=22 Score=26.32 Aligned_cols=36 Identities=22% Similarity=0.275 Sum_probs=27.6
Q ss_pred hhhhhHHHHHhhhhc-ccceeEEEEeeeccCCCcchh
Q psy4857 125 YCNVLTGVLRGACEM-VQLDITSKFIQDQLKGDNVTE 160 (327)
Q Consensus 125 ysn~lcGvirGaLe~-v~~~v~~~fv~d~l~gd~~tE 160 (327)
-+++.+|++.|+++. .+-+++++=++-.-+||+.=+
T Consensus 21 ~C~~~~G~~~G~~~~~~~~~~~v~E~~C~a~G~~~C~ 57 (62)
T PF02830_consen 21 VCWFTAGYLAGFFSALFGKEVEVEETKCQAMGDDHCE 57 (62)
T ss_dssp --HHHHHHHHHHHHHHHSSEEEEEEEE-GGGT-SSEE
T ss_pred eEHHHHHHHHHHHHHHhCCceEEEEeEEEcCCCCeeE
Confidence 347999999999987 788899999999999997543
No 18
>PF09536 DUF2378: Protein of unknown function (DUF2378); InterPro: IPR011751 This family consists of a set of at least 17 paralogous proteins in Myxococcus xanthus (strain DK 1622). Members are about 200 amino acids in length. No other homologs are known; the function is unknown.
Probab=45.09 E-value=78 Score=28.83 Aligned_cols=84 Identities=20% Similarity=0.256 Sum_probs=48.0
Q ss_pred hhHHhHHHHHh----hc--CCCCccchHHHHHHHHHHHHHhhCCCCcccccCCCCCeEEEEecCCccccceeccCCCCCC
Q psy4857 50 IGIRLIEDFLA----RT--QSTRCYDFKETAEKIQLGFRIYLGISPNISNWSAGGDEFSLIFETNPMLEFVELPDNCTNL 123 (327)
Q Consensus 50 IG~RlieefLa----r~--~~~rc~~~~~t~e~I~~~~K~flg~~a~v~~~~~~~~e~~l~~d~nPL~~FVelP~~~~~L 123 (327)
+|.|.++.|+. |. ..-+-..=+-+++-+..+|++--+....-..|. ...++.|.+.+.+.
T Consensus 73 lG~~~v~gf~~T~~Gr~~~~l~~~~gP~R~L~r~p~~~ra~~ny~e~~~~~~-G~~~~rl~~~~~~~------------- 138 (178)
T PF09536_consen 73 LGRRFVEGFFETLVGRALLGLARLGGPRRLLERAPRSYRAGVNYGERRVEWL-GPRSARLRMNRDFM------------- 138 (178)
T ss_pred HHHHHHHHHHHhHHHHHHHHHHhcCCHHHHHHHhhHHhhhccCcceeEEEEe-CCceEEEEEecCCC-------------
Confidence 47788888863 22 010111113344555566665555554333444 33566666554432
Q ss_pred chhhhhHHHHHhhhhcccce-eEEEE
Q psy4857 124 KYCNVLTGVLRGACEMVQLD-ITSKF 148 (327)
Q Consensus 124 ~ysn~lcGvirGaLe~v~~~-v~~~f 148 (327)
.-.+.+|+++++|++++.+ ++++-
T Consensus 139 -~p~f~~G~l~~~L~~~Ga~~~~V~~ 163 (178)
T PF09536_consen 139 -PPAFHEGVLEAALEAAGARGPRVRV 163 (178)
T ss_pred -ChHHHHHHHHHHHHHcCCCCCEEEE
Confidence 3347889999999998888 57653
No 19
>PF14056 DUF4250: Domain of unknown function (DUF4250)
Probab=44.72 E-value=25 Score=26.50 Aligned_cols=27 Identities=37% Similarity=0.822 Sum_probs=22.3
Q ss_pred HHHHHHHHHHhcC-CHHHHHHHHHHhchh
Q psy4857 22 YGALVSQLLKDYD-NVEDVNKQLDRMGYN 49 (327)
Q Consensus 22 yg~lV~ql~~d~e-~~~evn~~L~~mGyn 49 (327)
|+++ ..+|.+++ +.+++.++|..+||.
T Consensus 20 ~~sL-d~Lc~~~~id~~~l~~kL~~~Gy~ 47 (55)
T PF14056_consen 20 YSSL-DELCYDYDIDKEELEEKLASIGYE 47 (55)
T ss_pred cCCH-HHHHHHhCCCHHHHHHHHHHcCCe
Confidence 4555 48899996 889999999999984
No 20
>COG4009 Uncharacterized protein conserved in archaea [Function unknown]
Probab=37.35 E-value=20 Score=29.30 Aligned_cols=53 Identities=25% Similarity=0.426 Sum_probs=34.8
Q ss_pred eEEEEeeeccCCCcchhhhhhhHHhhhHHHHHHHHHhhcCCHHHHHHHHHHhchhhh
Q psy4857 144 ITSKFIQDQLKGDNVTELRNSELFTLTYGALVSQLLKDYDNVEDVNKQLDRMGYNIG 200 (327)
Q Consensus 144 v~~~fv~d~l~gd~~tEi~~~elf~ltYGalV~Ql~~d~e~~~evn~qL~~mGynIG 200 (327)
+.||..+..|+.|+..-|.|-+--+= | -| -.+..+++++||++.|++||-.|-
T Consensus 25 ~kA~l~k~~L~dDde~aIfnI~gT~S-y--~V-~Fl~~~~s~eev~~ele~mga~in 77 (88)
T COG4009 25 LKAHLAKVDLNDDDELAIFNIEGTSS-Y--YV-VFLEEVESEEEVERELEDMGAEIN 77 (88)
T ss_pred HHHHhcccccCCCCcEEEEEecCcee-E--EE-EEEeccCCHHHHHHHHHHhCchhc
Confidence 44555666777777777766553211 1 11 235677899999999999997653
No 21
>COG5169 HSF1 Heat shock transcription factor [Transcription]
Probab=36.61 E-value=39 Score=33.13 Aligned_cols=98 Identities=18% Similarity=0.257 Sum_probs=59.0
Q ss_pred chHHHHHHHHHHHHHhhC-CCCcccccCCCCCeEEEEecCCccccceeccCCCCCCchhhhhHHHHHhhhhcccceeEEE
Q psy4857 69 DFKETAEKIQLGFRIYLG-ISPNISNWSAGGDEFSLIFETNPMLEFVELPDNCTNLKYCNVLTGVLRGACEMVQLDITSK 147 (327)
Q Consensus 69 ~~~~t~e~I~~~~K~flg-~~a~v~~~~~~~~e~~l~~d~nPL~~FVelP~~~~~L~ysn~lcGvirGaLe~v~~~v~~~ 147 (327)
++....+||...|+|+-+ -......|+++|+.|+|. |.+-.+ ++-||.-...=+++.|+ =-|-|-+|-=--|
T Consensus 6 ~~~~~~~FV~KLy~iLe~~e~~k~I~Ws~~G~sfvI~-~~~~F~-~~iLpr~FKh~NfaSFV-----RQLN~YgFhKv~h 78 (282)
T COG5169 6 RWSQPKEFVHKLYQILEEPEYYKLIQWSPDGRSFVIL-DPEEFT-KVILPRYFKHGNFASFV-----RQLNKYGFHKVSH 78 (282)
T ss_pred CCCchhHHHHHHHHHhcCcccCCceEECCCCCEEEEe-Ccchhh-hhhhhhhhcccCHHHHH-----HHHHhcCcEeccC
Confidence 345567899889999999 556888999999999444 643232 34588777766777665 2344433321111
Q ss_pred EeeeccCC--CcchhhhhhhHHhhhHHHHH
Q psy4857 148 FIQDQLKG--DNVTELRNSELFTLTYGALV 175 (327)
Q Consensus 148 fv~d~l~g--d~~tEi~~~elf~ltYGalV 175 (327)
-++...+ +..-|+++.. |.+-++.+-
T Consensus 79 -~~~~~~~~n~~~wef~~~n-F~~g~~~~L 106 (282)
T COG5169 79 -KSGQRSYYNENVWEFGNKN-FQLGMIELL 106 (282)
T ss_pred -CcccccccchhheeecCch-hccCcHHHH
Confidence 1122211 1224565555 777777665
No 22
>COG4009 Uncharacterized protein conserved in archaea [Function unknown]
Probab=34.65 E-value=29 Score=28.33 Aligned_cols=21 Identities=29% Similarity=0.634 Sum_probs=17.5
Q ss_pred HhcCCHHHHHHHHHHhchhhh
Q psy4857 31 KDYDNVEDVNKQLDRMGYNIG 51 (327)
Q Consensus 31 ~d~e~~~evn~~L~~mGynIG 51 (327)
..+++++||++.|++||-.|-
T Consensus 57 ~~~~s~eev~~ele~mga~in 77 (88)
T COG4009 57 EEVESEEEVERELEDMGAEIN 77 (88)
T ss_pred eccCCHHHHHHHHHHhCchhc
Confidence 456899999999999986653
No 23
>PF13314 DUF4083: Domain of unknown function (DUF4083)
Probab=34.58 E-value=67 Score=24.59 Aligned_cols=32 Identities=22% Similarity=0.483 Sum_probs=24.4
Q ss_pred hhhHHhhhHHHHHHHHHhhc----CCHHHHHHHHHH
Q psy4857 163 NSELFTLTYGALVSQLLKDY----DNVEDVNKQLDR 194 (327)
Q Consensus 163 ~~elf~ltYGalV~Ql~~d~----e~~~evn~qL~~ 194 (327)
..=+|.+.||-+++-++..- .+...+|++||+
T Consensus 15 l~vl~~~~Ftl~IRri~~~s~~kkq~~~~~eqKLDr 50 (58)
T PF13314_consen 15 LIVLFGASFTLFIRRILINSNAKKQDVDSMEQKLDR 50 (58)
T ss_pred HHHHHHHHHHHHHHHHHHhccccccchhHHHHHHHH
Confidence 34467788888998888764 366789999995
No 24
>TIGR02265 Mxa_TIGR02265 Myxococcus xanthus paralogous family TIGR02265. This family consists of a set of at least 17 paralogous proteins in Myxococcus xanthus DK 1622. Members are about 200 amino acids in length. No other homologs are known; the function is unknown.
Probab=34.10 E-value=1.7e+02 Score=26.76 Aligned_cols=99 Identities=16% Similarity=0.142 Sum_probs=59.1
Q ss_pred chhhhHHHHHHHHhhcCCCC-------ccchHHHHHHHHHHHHHhhCCCCccccCCCCCCeEEEEecCCccccceeccCC
Q psy4857 196 GYNIGIRLIEDFLARTQSTR-------CYDFKETAEKIQLGFRIYLGISPNISNWSAGGDEFSLIFETNPMLEFVELPDN 268 (327)
Q Consensus 196 GynIG~RLieefLak~~~~r-------c~~f~~t~e~Ik~~~KmflGi~a~v~~~~~~~~ef~l~~d~NPL~~FVelP~~ 268 (327)
=+-+|.|.+++|+. |..+| -.+=+-++.-+..++++.-+.+..-..|. ..+++.|.+...
T Consensus 71 ~r~lG~~~v~~f~~-T~vGr~~~~l~~~~gPrrlL~r~p~~yra~~~yge~~~~~~-Gp~~~~l~~~~~----------- 137 (179)
T TIGR02265 71 FRALGERAVTGFRS-TVVGRALLGLVRLLGPRRLLSRAPQGYRAAVNYGERRVVET-GPTSGRLWMNRD----------- 137 (179)
T ss_pred HHHHHHHHHHHHHH-HHHhHHHHHHHhcCCHHHHHHHHhHHHHhhcccceeEEEEe-CCcEEEEEecCC-----------
Confidence 34578899999984 22222 12224555555667776655555333344 335666665443
Q ss_pred CCCCchhhhhHHHHHhhhhcccce-EEEEEeeeccCCCCceEEEEE
Q psy4857 269 CTNLKYCNVLTGVLRGACEMVQLD-ITSKFIQDQLKGDNVTELRVK 313 (327)
Q Consensus 269 ~~~L~ysn~lcGvIrGaLe~v~~~-V~~~fv~d~l~gd~~tei~ik 313 (327)
..-..+.+|+++|+|+.++.+ ++++ -.-.|.+.+|.+|.
T Consensus 138 ---~~~~~f~~G~l~~aLe~~Ga~~~~V~---~~~~g~~~~~y~i~ 177 (179)
T TIGR02265 138 ---FMPPAYHEGVLHAALRAVGARDVRVR---GRAFGGLDATYRLS 177 (179)
T ss_pred ---CCchHHHHHHHHHHHHHcCCCCCEEE---EEecCCCCceEEEE
Confidence 223678899999999999855 5544 23344556777664
No 25
>TIGR02019 BchJ bacteriochlorophyll 4-vinyl reductase. This model represents the component of bacteriochlorophyll synthetase responsible for reduction of the B-ring pendant ethylene (4-vinyl) group. It appears that this step must precede the reduction of ring D, at least by the "dark" protochlorophyllide reductase enzymes BchN, BchB and BchL. This family appears to be present in photosynthetic bacteria except for the cyanobacterial clade. Cyanobacteria must use a non-orthologous gene to carry out this required step for the biosynthesis of both bacteriochlorophyll and chlorophyll.
Probab=32.30 E-value=3.5e+02 Score=25.05 Aligned_cols=142 Identities=11% Similarity=0.107 Sum_probs=71.2
Q ss_pred CCcchhhhhhhHHhhhHHHHHHHHHhhcCCHHHHHHHHHHhchhhhHHHHHHHHhhc------CCCCccchHHHHHHH-H
Q psy4857 155 GDNVTELRNSELFTLTYGALVSQLLKDYDNVEDVNKQLDRMGYNIGIRLIEDFLART------QSTRCYDFKETAEKI-Q 227 (327)
Q Consensus 155 gd~~tEi~~~elf~ltYGalV~Ql~~d~e~~~evn~qL~~mGynIG~RLieefLak~------~~~rc~~f~~t~e~I-k 227 (327)
+....+++....|.=.|.+| +.--..+.-..-|.+.|++-|.+++...+.+- -.+.=.-++=.+-.| |
T Consensus 37 ~~~p~~mv~E~~~~aL~~aL-----~~elG~~aa~~vl~~~G~~ta~y~l~~rIp~~~q~~Lr~lp~~~~~r~l~~aI~k 111 (188)
T TIGR02019 37 PGPPSGMLPESQFSTLHRWL-----RDTLGETAAARLLRESGLATADYILANRIPPPAQRLIRALPAGLAARVLLTAIAK 111 (188)
T ss_pred CCCchhcCCHHHHHHHHHHH-----HHHhCHHHHHHHHHHHhHHHHHHHHHHHhhHHHHHHHHHCChHHHHHHHHHHHHH
Confidence 45567776555544333333 22223345666677777766666633222211 011111112223445 6
Q ss_pred HHHHHhhCCCCccccCCCCCCeEEEEecCCccccceeccCCCCCCchhhhhHHHHHhhhhcc-cceEEEEEeeeccCCCC
Q psy4857 228 LGFRIYLGISPNISNWSAGGDEFSLIFETNPMLEFVELPDNCTNLKYCNVLTGVLRGACEMV-QLDITSKFIQDQLKGDN 306 (327)
Q Consensus 228 ~~~KmflGi~a~v~~~~~~~~ef~l~~d~NPL~~FVelP~~~~~L~ysn~lcGvIrGaLe~v-~~~V~~~fv~d~l~gd~ 306 (327)
.+| .|-| +..++- ..++--.|.+.+||.+.-. |. +.=- +++-+|++.|.+..+ +=++.|.=++..-.|++
T Consensus 112 ~aW-tf~G-~G~fs~--~~~~~l~i~I~ds~~a~~~--~~--~~P~-C~~~aGife~lFs~lv~~~~~v~Et~C~a~G~~ 182 (188)
T TIGR02019 112 HAW-TFAG-SGKFRY--VSGPPLSFEIARNPVVAGE--SS--DTPV-CHWYAAVFERLLRRLVWPHVAVRETACCAKGAP 182 (188)
T ss_pred HHH-hhcc-cceEEE--eeCCCeEEEEecChhhhcC--CC--CCce-eeeeHHHHHHHHHHHhCCCceEEeehHhhcCCC
Confidence 777 4444 222211 1334455777788776442 43 2222 567778888877765 44455555555666766
Q ss_pred ceEE
Q psy4857 307 VTEL 310 (327)
Q Consensus 307 ~tei 310 (327)
.-.+
T Consensus 183 ~C~F 186 (188)
T TIGR02019 183 RCRF 186 (188)
T ss_pred ccee
Confidence 5443
No 26
>PF07700 HNOB: Heme NO binding; InterPro: IPR011644 This ligand-binding domain is found in soluble guanylate cyclases. In soluble guanylate cyclases this domain binds heme via a covalent linkage to histidine []. Soluble guanylate cyclases are nitric oxide-responsive signaling proteins.; GO: 0020037 heme binding; PDB: 3TFE_A 2O0C_B 3TFA_A 2O09_B 2O0G_B 3L6J_A 3TFG_B 3TF8_A 3TFF_A 3TF9_B ....
Probab=32.07 E-value=3.2e+02 Score=23.99 Aligned_cols=111 Identities=21% Similarity=0.301 Sum_probs=0.0
Q ss_pred HHHHHHHhhcC-CHHHHHHHHHHhchhhhHHHHHHHHh---hcCCCCccchHHHHHHH-HHHHHHhhCCCC-ccccCCCC
Q psy4857 173 ALVSQLLKDYD-NVEDVNKQLDRMGYNIGIRLIEDFLA---RTQSTRCYDFKETAEKI-QLGFRIYLGISP-NISNWSAG 246 (327)
Q Consensus 173 alV~Ql~~d~e-~~~evn~qL~~mGynIG~RLieefLa---k~~~~rc~~f~~t~e~I-k~~~KmflGi~a-~v~~~~~~ 246 (327)
+||..+.+-.. +.+++ |++.|.-.=..+.+.+-. +...+...+|...++-| ...=|.|.+..| +..--..+
T Consensus 50 ~lv~a~a~~~g~~~~~~---l~~fG~~~~~~~~~~~~~~~l~~~g~~~~~FL~~ld~iH~~v~~~~p~~~~P~f~~~~~~ 126 (171)
T PF07700_consen 50 KLVEAAAEVTGISVEEL---LEEFGEYFFDFLSESGYERLLRFLGRDLFDFLNNLDNIHEEVRKLYPDAKPPSFRCEEED 126 (171)
T ss_dssp HHHHHHHHHHTS-HHHH---HHHHHHHHHHHHHHHCCHHHHHCTCSSHHHHHHHHHHHHHHHHHHSTTSS--EEEEEEEE
T ss_pred HHHHHHHHHhCCCHHHH---HHHHHHHHHHHHHHhCcHHHHHhcCCCHHHHHHhHHHHHHHHHHhCCCCcCCeEEEEECC
Q ss_pred CCeEEEEecCCccccceeccCCC--CCCchhhhhHHHHHhhhhcc-cceEEEEEeeec
Q psy4857 247 GDEFSLIFETNPMLEFVELPDNC--TNLKYCNVLTGVLRGACEMV-QLDITSKFIQDQ 301 (327)
Q Consensus 247 ~~ef~l~~d~NPL~~FVelP~~~--~~L~ysn~lcGvIrGaLe~v-~~~V~~~fv~d~ 301 (327)
+++..|+ | ..-.++.++-|.|+|+-+.. +.+|+..-++..
T Consensus 127 ~~~l~l~---------------Y~S~R~gl~~~~~Gli~g~A~~f~~~~v~i~~~~~~ 169 (171)
T PF07700_consen 127 DNELTLH---------------YRSPRPGLCPYVIGLIRGAAKHFFELDVEIEHVECM 169 (171)
T ss_dssp TTEEEEE---------------EEESSSSTHHHHHHHHHHHHHHTTEEEEEEEEEECC
T ss_pred CCEEEEE---------------EECCCcCHHHHHHHHHHHHHHHhCCCCeEEEEeccc
No 27
>smart00843 Ftsk_gamma This domain directs oriented DNA translocation and forms a winged helix structure. Mutated proteins with substitutions in the FtsK gamma DNA-recognition helix are impaired in DNA binding.
Probab=30.84 E-value=1.1e+02 Score=23.50 Aligned_cols=39 Identities=26% Similarity=0.490 Sum_probs=27.0
Q ss_pred HHHHHHHHHHHhc-CCHHHHHHHHHHhchhhhHHhHHHHHh
Q psy4857 21 TYGALVSQLLKDY-DNVEDVNKQLDRMGYNIGIRLIEDFLA 60 (327)
Q Consensus 21 tyg~lV~ql~~d~-e~~~evn~~L~~mGynIG~RlieefLa 60 (327)
+|-+.++..++.- -+++-+.++| ++|||-..||+|.+=.
T Consensus 6 ly~~a~~~V~~~~~~S~S~lQR~~-~IGynrAariid~lE~ 45 (63)
T smart00843 6 LYDEAVELVIETQKASTSLLQRRL-RIGYNRAARLIDQLEE 45 (63)
T ss_pred HHHHHHHHHHHhCCCChHHHHHHH-hcchhHHHHHHHHHHH
Confidence 4555554444333 3889998888 5799999999975443
No 28
>PF10026 DUF2268: Predicted Zn-dependent protease (DUF2268); InterPro: IPR018728 This domain, found in various hypothetical bacterial proteins, as well as predicted zinc dependent proteases, has no known function.
Probab=30.69 E-value=30 Score=31.34 Aligned_cols=19 Identities=26% Similarity=0.843 Sum_probs=17.3
Q ss_pred hchhhhHHHHHHHHhhcCC
Q psy4857 195 MGYNIGIRLIEDFLARTQS 213 (327)
Q Consensus 195 mGynIG~RLieefLak~~~ 213 (327)
+||-+|.||+..||.|++.
T Consensus 162 ~GY~~GY~iVk~yl~~~~~ 180 (195)
T PF10026_consen 162 LGYALGYRIVKAYLEKHGD 180 (195)
T ss_pred chHHHHHHHHHHHHHHCCC
Confidence 8999999999999998754
No 29
>KOG3901|consensus
Probab=30.40 E-value=63 Score=27.54 Aligned_cols=76 Identities=20% Similarity=0.328 Sum_probs=56.2
Q ss_pred chhhhhhhHHhhhHH---------HHHHHHHhhcC-C-HHHHHHHHHHhchhhhHHHHHHHHh---hc--CCCCccchHH
Q psy4857 158 VTELRNSELFTLTYG---------ALVSQLLKDYD-N-VEDVNKQLDRMGYNIGIRLIEDFLA---RT--QSTRCYDFKE 221 (327)
Q Consensus 158 ~tEi~~~elf~ltYG---------alV~Ql~~d~e-~-~~evn~qL~~mGynIG~RLieefLa---k~--~~~rc~~f~~ 221 (327)
+....+++|=++.|| +-| +++.|+. + +.++-..-..|| +=|-=.+|||+= |. ...||.++.-
T Consensus 7 rk~lF~Kdl~~mmYgfGDd~nP~~~tv-~~Le~iV~~Yi~elt~~a~~~g-~rgk~~veD~~f~lRkDpkK~~Rv~eLL~ 84 (109)
T KOG3901|consen 7 RKHLFSKDLRSMMYGFGDDVNPYPETV-DLLEDIVLEYITELTHAAMEIG-KRGKVKVEDFKFLLRKDPKKLGRVKELLA 84 (109)
T ss_pred HHHHHHHHHHHHHHhcCCCCCccHhHH-HHHHHHHHHHHHHHHHHHHHhc-ccCceeHHHHHHHHHhChHHHhHHHHHHH
Confidence 556678888899888 344 6666665 3 367767777788 667778888865 44 5789999999
Q ss_pred HHHHHHHHHHHhhC
Q psy4857 222 TAEKIQLGFRIYLG 235 (327)
Q Consensus 222 t~e~Ik~~~KmflG 235 (327)
|-+-+|.|=|.|=+
T Consensus 85 mneelk~ArKaF~~ 98 (109)
T KOG3901|consen 85 MNEELKKARKAFDE 98 (109)
T ss_pred hHHHHHHHHhccch
Confidence 99999888887744
No 30
>TIGR02019 BchJ bacteriochlorophyll 4-vinyl reductase. This model represents the component of bacteriochlorophyll synthetase responsible for reduction of the B-ring pendant ethylene (4-vinyl) group. It appears that this step must precede the reduction of ring D, at least by the "dark" protochlorophyllide reductase enzymes BchN, BchB and BchL. This family appears to be present in photosynthetic bacteria except for the cyanobacterial clade. Cyanobacteria must use a non-orthologous gene to carry out this required step for the biosynthesis of both bacteriochlorophyll and chlorophyll.
Probab=29.95 E-value=4.1e+02 Score=24.57 Aligned_cols=112 Identities=12% Similarity=0.138 Sum_probs=57.0
Q ss_pred HHHHHHHHHhchhhhHHhHHHHHhhc------CCCCccchHHHHHHH-HHHHHHhhCCCCcccccCCCCCeEEEEecCCc
Q psy4857 37 EDVNKQLDRMGYNIGIRLIEDFLART------QSTRCYDFKETAEKI-QLGFRIYLGISPNISNWSAGGDEFSLIFETNP 109 (327)
Q Consensus 37 ~evn~~L~~mGynIG~RlieefLar~------~~~rc~~~~~t~e~I-~~~~K~flg~~a~v~~~~~~~~e~~l~~d~nP 109 (327)
+.-..-|.+.|++-|.+++..-+-+. -.+.=--++=.+-.| |.+| .|-|-- ..+ ...++--.|.+.+||
T Consensus 63 ~aa~~vl~~~G~~ta~y~l~~rIp~~~q~~Lr~lp~~~~~r~l~~aI~k~aW-tf~G~G-~fs--~~~~~~l~i~I~ds~ 138 (188)
T TIGR02019 63 TAAARLLRESGLATADYILANRIPPPAQRLIRALPAGLAARVLLTAIAKHAW-TFAGSG-KFR--YVSGPPLSFEIARNP 138 (188)
T ss_pred HHHHHHHHHHhHHHHHHHHHHHhhHHHHHHHHHCChHHHHHHHHHHHHHHHH-hhcccc-eEE--EeeCCCeEEEEecCh
Confidence 45555677777766655532222211 011101112224456 7777 333311 110 112344456667777
Q ss_pred cccceeccCCCCCCchhhhhHHHHHhhhhc-ccceeEEEEeeeccCCCc
Q psy4857 110 MLEFVELPDNCTNLKYCNVLTGVLRGACEM-VQLDITSKFIQDQLKGDN 157 (327)
Q Consensus 110 L~~FVelP~~~~~L~ysn~lcGvirGaLe~-v~~~v~~~fv~d~l~gd~ 157 (327)
...-. |. +.=. |++-+|++.|.+.. ++=++.|.=++-.-.|++
T Consensus 139 ~a~~~--~~--~~P~-C~~~aGife~lFs~lv~~~~~v~Et~C~a~G~~ 182 (188)
T TIGR02019 139 VVAGE--SS--DTPV-CHWYAAVFERLLRRLVWPHVAVRETACCAKGAP 182 (188)
T ss_pred hhhcC--CC--CCce-eeeeHHHHHHHHHHHhCCCceEEeehHhhcCCC
Confidence 76442 43 2222 66888888888877 677777766666666664
No 31
>PF06825 HSBP1: Heat shock factor binding protein 1; InterPro: IPR009643 Heat shock factor binding protein 1 (HSBP1) appears to be a negative regulator of the heat shock response [].; PDB: 3CI9_A.
Probab=29.31 E-value=43 Score=25.14 Aligned_cols=27 Identities=19% Similarity=0.468 Sum_probs=21.4
Q ss_pred HHHHHHHHhcCCH-HHHHHHHHHhchhh
Q psy4857 24 ALVSQLLKDYDNV-EDVNKQLDRMGYNI 50 (327)
Q Consensus 24 ~lV~ql~~d~e~~-~evn~~L~~mGynI 50 (327)
.+.+|++.++++. +.+-.++|+||-+|
T Consensus 10 ~lL~qmq~kFq~mS~~I~~riDeM~~RI 37 (54)
T PF06825_consen 10 NLLQQMQDKFQTMSDQILGRIDEMSSRI 37 (54)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhH
Confidence 4667888888776 88999999997654
No 32
>COG4930 Predicted ATP-dependent Lon-type protease [Posttranslational modification, protein turnover, chaperones]
Probab=27.75 E-value=1.5e+02 Score=31.34 Aligned_cols=129 Identities=19% Similarity=0.263 Sum_probs=72.4
Q ss_pred chhhHHHHHHHHHHHHHHHHHHhc-----CCHHHHHHHHHHhchhhhHHhHHHHHhhc--C---------CCCccchHHH
Q psy4857 10 SKKVNSELFTLTYGALVSQLLKDY-----DNVEDVNKQLDRMGYNIGIRLIEDFLART--Q---------STRCYDFKET 73 (327)
Q Consensus 10 ~~kvn~elfaltyg~lV~ql~~d~-----e~~~evn~~L~~mGynIG~RlieefLar~--~---------~~rc~~~~~t 73 (327)
..|+..|.|+=-||-++.|+-.-. ++.+++=.+.-+.|-|.-+|=+-- ..|+ + .-...+.+.+
T Consensus 366 iPK~rpehft~rYG~isDY~AE~~reMRKrS~sd~i~rf~kLgnNlnqRDvia-vkrt~SGLlKLL~Pd~t~~kee~k~i 444 (683)
T COG4930 366 IPKIRPEHFTKRYGVISDYFAEALREMRKRSLSDLIGRFVKLGNNLNQRDVIA-VKRTTSGLLKLLFPDKTFDKEELKTI 444 (683)
T ss_pred CccCCHHHhccccchHHHHHHHHHHHHHHHHHHHHHHHHHHhccccchhhhHH-HHHHHHHHHHHhCCCCCcCHHHHHHH
Confidence 457889999999999986654332 577888888889999988774321 1122 1 1111233444
Q ss_pred HHHH---HHHHHHhhCCCCcccccCCCCCeEEEEecCCcccc-ceeccCCCCC-CchhhhhHHHHHhhhhcccceeEEEE
Q psy4857 74 AEKI---QLGFRIYLGISPNISNWSAGGDEFSLIFETNPMLE-FVELPDNCTN-LKYCNVLTGVLRGACEMVQLDITSKF 148 (327)
Q Consensus 74 ~e~I---~~~~K~flg~~a~v~~~~~~~~e~~l~~d~nPL~~-FVelP~~~~~-L~ysn~lcGvirGaLe~v~~~v~~~f 148 (327)
+++- ..--|-.|-+-+-..=.. -.||.+ |+.-|.+ ||++|+.-|+ |--+ | ..-+-.+|.
T Consensus 445 leyAle~RrRVkeqLkKigg~EFfd---vnfSyi-dne~l~e~fvsvpe~gg~~lipa----g--------~~kpg~~~~ 508 (683)
T COG4930 445 LEYALELRRRVKEQLKKIGGGEFFD---VNFSYI-DNETLEEFFVSVPEQGGSELIPA----G--------MPKPGVVHL 508 (683)
T ss_pred HHHHHHHHHHHHHHHHhcCCccccc---ceeeee-ccccHHHHheeCcccCCceecCC----C--------CCCCceEEE
Confidence 4443 223333443333221111 236666 4444665 9999998653 4332 2 244555676
Q ss_pred eeeccCC
Q psy4857 149 IQDQLKG 155 (327)
Q Consensus 149 v~d~l~g 155 (327)
|...-.|
T Consensus 509 v~~~~~g 515 (683)
T COG4930 509 VTQAESG 515 (683)
T ss_pred EeecccC
Confidence 6555444
No 33
>PF12983 DUF3867: Protein of unknown function (DUF3867); InterPro: IPR024218 This entry represents a family of functionally uncharacterised proteins that are found in bacteria. Proteins in this family are approximately 190 amino acids in length.
Probab=25.18 E-value=87 Score=28.99 Aligned_cols=31 Identities=16% Similarity=0.503 Sum_probs=26.4
Q ss_pred HHHHHHHHHHhcC-CHHHHHHHHHHhchhhhH
Q psy4857 22 YGALVSQLLKDYD-NVEDVNKQLDRMGYNIGI 52 (327)
Q Consensus 22 yg~lV~ql~~d~e-~~~evn~~L~~mGynIG~ 52 (327)
|.-|-.+++++|- +++++++|+..||.+++.
T Consensus 60 f~niQkk~mERYGfd~~~iE~q~K~~Gid~~~ 91 (186)
T PF12983_consen 60 FLNIQKKFMERYGFDPSEIEKQMKSMGIDMSS 91 (186)
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHcCCCccc
Confidence 4567788999995 899999999999988763
No 34
>PF10026 DUF2268: Predicted Zn-dependent protease (DUF2268); InterPro: IPR018728 This domain, found in various hypothetical bacterial proteins, as well as predicted zinc dependent proteases, has no known function.
Probab=24.88 E-value=44 Score=30.31 Aligned_cols=19 Identities=26% Similarity=0.843 Sum_probs=17.1
Q ss_pred hchhhhHHhHHHHHhhcCC
Q psy4857 46 MGYNIGIRLIEDFLARTQS 64 (327)
Q Consensus 46 mGynIG~RlieefLar~~~ 64 (327)
+||.+|.+|++.||.|++.
T Consensus 162 ~GY~~GY~iVk~yl~~~~~ 180 (195)
T PF10026_consen 162 LGYALGYRIVKAYLEKHGD 180 (195)
T ss_pred chHHHHHHHHHHHHHHCCC
Confidence 8999999999999998743
No 35
>PF09397 Ftsk_gamma: Ftsk gamma domain; InterPro: IPR018541 This domain directs oriented DNA translocation and forms a winged helix structure []. Mutated proteins with substitutions in the FtsK gamma DNA-recognition helix are impaired in DNA binding []. ; PDB: 2VE9_B 2VE8_E 2J5O_A 2J5P_A.
Probab=24.71 E-value=1.4e+02 Score=23.10 Aligned_cols=37 Identities=22% Similarity=0.521 Sum_probs=23.8
Q ss_pred HHHHHHHHHHhcC-CHHHHHHHHHHhchhhhHHhHHHHH
Q psy4857 22 YGALVSQLLKDYD-NVEDVNKQLDRMGYNIGIRLIEDFL 59 (327)
Q Consensus 22 yg~lV~ql~~d~e-~~~evn~~L~~mGynIG~RlieefL 59 (327)
|-+.++...+.-. +++-+.++| ++|||-..||+|.+=
T Consensus 8 y~~a~~~V~~~~~~S~S~lQR~~-rIGynrAariid~LE 45 (65)
T PF09397_consen 8 YEEAVEFVIEEGKASISLLQRKF-RIGYNRAARIIDQLE 45 (65)
T ss_dssp HHHHHHHHHHCTCECHHHHHHHH-T--HHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCccHHHHHHHh-CCCHHHHHHHHHHHH
Confidence 4555533333333 888888887 579999999997443
No 36
>COG2345 Predicted transcriptional regulator [Transcription]
Probab=24.41 E-value=6.1e+02 Score=24.03 Aligned_cols=135 Identities=19% Similarity=0.274 Sum_probs=85.3
Q ss_pred hhHHhhhHHHHHHHHHhhcC---CHHHHHHHHHHhchhhhHHHHHHHHhhcCCCCccchHHHHHHHHHHHHHhhCCCCcc
Q psy4857 164 SELFTLTYGALVSQLLKDYD---NVEDVNKQLDRMGYNIGIRLIEDFLARTQSTRCYDFKETAEKIQLGFRIYLGISPNI 240 (327)
Q Consensus 164 ~elf~ltYGalV~Ql~~d~e---~~~evn~qL~~mGynIG~RLieefLak~~~~rc~~f~~t~e~Ik~~~KmflGi~a~v 240 (327)
.|.|.-.||++..+++...+ ..+.+|+-|++. +.|+++++=..-+. -.++.+.++.+ +....=+|.-|..
T Consensus 78 ~~~f~~~y~~l~~~~l~~l~~~~G~~~l~~~l~~r----~~~~~~~~~~~~~~--~~~~ee~~e~L-v~l~~~~gy~~e~ 150 (218)
T COG2345 78 REQFPKRYGELALALLDALEETGGEEALNAFLEKR----AQAIGAQYRPAMGG--DADLEEKVERL-VELLSDLGYMPEL 150 (218)
T ss_pred hhhcchhhHHHHHHHHHHHHHhccHHHHHHHHHHH----HHHHHHHHhhcCCC--CCCHHHHHHHH-HHHHHhCCccccc
Confidence 35899999999999998887 336666666664 55666554433332 34445555554 4445557888865
Q ss_pred ccCCCCCCeEEEEecCCccccceeccCCCCCCchhhhhHHHHHhhhhcccceEEEEEeeeccCCCCceEEEEEech
Q psy4857 241 SNWSAGGDEFSLIFETNPMLEFVELPDNCTNLKYCNVLTGVLRGACEMVQLDITSKFIQDQLKGDNVTELRVKFIK 316 (327)
Q Consensus 241 ~~~~~~~~ef~l~~d~NPL~~FVelP~~~~~L~ysn~lcGvIrGaLe~v~~~V~~~fv~d~l~gd~~tei~ik~~~ 316 (327)
.... .+.|.|+-.+=| |..+-+.+ =.-|+.-++++++.|.-.+++.+++ .+.|..+-.+.|+..+
T Consensus 151 ~~~~--~~~~~l~e~nCP---i~~vA~~~--~~~C~~e~~~~~~~Lg~~~v~~~~~----~~~g~~~C~~~v~~~~ 215 (218)
T COG2345 151 RPVD--NGRVQLIEHNCP---ISAVAEEF--PVACESELALFAEVLGTAHVERTEH----ILDGPGRCTYHVKLES 215 (218)
T ss_pred cccC--CCceEEEecCCc---hHHHHHHh--HHHHHHHHHHHHHHhccCCccceee----eecCCCceEEEeecCC
Confidence 3322 456777755556 44444442 2356777888888888767777766 4556666677776543
No 37
>COG4930 Predicted ATP-dependent Lon-type protease [Posttranslational modification, protein turnover, chaperones]
Probab=23.68 E-value=2.2e+02 Score=30.23 Aligned_cols=105 Identities=20% Similarity=0.279 Sum_probs=58.2
Q ss_pred hhhhhHHhhhHHHHHHHHHhhc------CCHHHHHHHHHHhchhhhHHHHHHHHhhc--C---------CCCccchHHHH
Q psy4857 161 LRNSELFTLTYGALVSQLLKDY------DNVEDVNKQLDRMGYNIGIRLIEDFLART--Q---------STRCYDFKETA 223 (327)
Q Consensus 161 i~~~elf~ltYGalV~Ql~~d~------e~~~evn~qL~~mGynIG~RLieefLak~--~---------~~rc~~f~~t~ 223 (327)
+...|.||=-||-++ .|+.++ ++.++.=.+.-|.|-|.-+|=+-.+ .|+ + .-.-.+.+.++
T Consensus 368 K~rpehft~rYG~is-DY~AE~~reMRKrS~sd~i~rf~kLgnNlnqRDviav-krt~SGLlKLL~Pd~t~~kee~k~il 445 (683)
T COG4930 368 KIRPEHFTKRYGVIS-DYFAEALREMRKRSLSDLIGRFVKLGNNLNQRDVIAV-KRTTSGLLKLLFPDKTFDKEELKTIL 445 (683)
T ss_pred cCCHHHhccccchHH-HHHHHHHHHHHHHHHHHHHHHHHHhccccchhhhHHH-HHHHHHHHHHhCCCCCcCHHHHHHHH
Confidence 445999999999987 665554 3677777788888988887743211 122 1 11112233444
Q ss_pred HHH---HHHHHHhhCCCCccccCCCCCCeEEEEecCCcccc-ceeccCCCCC
Q psy4857 224 EKI---QLGFRIYLGISPNISNWSAGGDEFSLIFETNPMLE-FVELPDNCTN 271 (327)
Q Consensus 224 e~I---k~~~KmflGi~a~v~~~~~~~~ef~l~~d~NPL~~-FVelP~~~~~ 271 (327)
++- ..--|-.|-+-+-.+-... .||.+ |..-|.+ ||++|++-|+
T Consensus 446 eyAle~RrRVkeqLkKigg~EFfdv---nfSyi-dne~l~e~fvsvpe~gg~ 493 (683)
T COG4930 446 EYALELRRRVKEQLKKIGGGEFFDV---NFSYI-DNETLEEFFVSVPEQGGS 493 (683)
T ss_pred HHHHHHHHHHHHHHHhcCCcccccc---eeeee-ccccHHHHheeCcccCCc
Confidence 432 2223334433332222222 36665 4444665 9999998643
No 38
>PF05119 Terminase_4: Phage terminase, small subunit; InterPro: IPR006448 This entry is represented by Streptococcus phage 7201, Orf21. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This group of sequences describe the distinct family of phage (and integrated prophage) putative terminase small subunit sequnces. Members tend to be encoded by the gene adjacent to the phage terminase large subunit gene.
Probab=23.18 E-value=64 Score=25.42 Aligned_cols=34 Identities=15% Similarity=0.330 Sum_probs=30.8
Q ss_pred hHHhhhHHHHHHHHHhhcCCHHHHHHHHHHhchh
Q psy4857 165 ELFTLTYGALVSQLLKDYDNVEDVNKQLDRMGYN 198 (327)
Q Consensus 165 elf~ltYGalV~Ql~~d~e~~~evn~qL~~mGyn 198 (327)
.+++-++..+++.||..|..+.+..++|.+.|+-
T Consensus 16 ~~l~~~D~~~l~~yc~~~~~~~~~~~~l~~~G~~ 49 (100)
T PF05119_consen 16 GILSNLDVPLLERYCEAYSRYREAEKELKKEGFV 49 (100)
T ss_pred CCCcHhHHHHHHHHHHHHHHHHHHHHHHHHcCce
Confidence 4577889999999999999999999999999975
No 39
>COG5169 HSF1 Heat shock transcription factor [Transcription]
Probab=22.66 E-value=96 Score=30.50 Aligned_cols=59 Identities=15% Similarity=0.316 Sum_probs=40.1
Q ss_pred chHHHHHHHHHHHHHhhC-CCCccccCCCCCCeEEEEecCCccccceeccCCCCCCchhhhh
Q psy4857 218 DFKETAEKIQLGFRIYLG-ISPNISNWSAGGDEFSLIFETNPMLEFVELPDNCTNLKYCNVL 278 (327)
Q Consensus 218 ~f~~t~e~Ik~~~KmflG-i~a~v~~~~~~~~ef~l~~d~NPL~~FVelP~~~~~L~ysn~l 278 (327)
++....+||..-|+|+-+ =......|+++|+.|.+. +.+-.+ ++-||.-.+.=+++.++
T Consensus 6 ~~~~~~~FV~KLy~iLe~~e~~k~I~Ws~~G~sfvI~-~~~~F~-~~iLpr~FKh~NfaSFV 65 (282)
T COG5169 6 RWSQPKEFVHKLYQILEEPEYYKLIQWSPDGRSFVIL-DPEEFT-KVILPRYFKHGNFASFV 65 (282)
T ss_pred CCCchhHHHHHHHHHhcCcccCCceEECCCCCEEEEe-Ccchhh-hhhhhhhhcccCHHHHH
Confidence 345667899678999998 444778899999999544 633222 33488766655555554
No 40
>TIGR02265 Mxa_TIGR02265 Myxococcus xanthus paralogous family TIGR02265. This family consists of a set of at least 17 paralogous proteins in Myxococcus xanthus DK 1622. Members are about 200 amino acids in length. No other homologs are known; the function is unknown.
Probab=22.45 E-value=3.4e+02 Score=24.86 Aligned_cols=84 Identities=17% Similarity=0.168 Sum_probs=48.7
Q ss_pred hhhhHHhHHHHHhhcCCCC-------ccchHHHHHHHHHHHHHhhCCCCcccccCCCCCeEEEEecCCccccceeccCCC
Q psy4857 48 YNIGIRLIEDFLARTQSTR-------CYDFKETAEKIQLGFRIYLGISPNISNWSAGGDEFSLIFETNPMLEFVELPDNC 120 (327)
Q Consensus 48 ynIG~RlieefLar~~~~r-------c~~~~~t~e~I~~~~K~flg~~a~v~~~~~~~~e~~l~~d~nPL~~FVelP~~~ 120 (327)
+.+|.|.+++|+. +..+| -..=+-++.-+..+|++--+..-.-..|+ ...++-|.+...
T Consensus 72 r~lG~~~v~~f~~-T~vGr~~~~l~~~~gPrrlL~r~p~~yra~~~yge~~~~~~-Gp~~~~l~~~~~------------ 137 (179)
T TIGR02265 72 RALGERAVTGFRS-TVVGRALLGLVRLLGPRRLLSRAPQGYRAAVNYGERRVVET-GPTSGRLWMNRD------------ 137 (179)
T ss_pred HHHHHHHHHHHHH-HHHhHHHHHHHhcCCHHHHHHHHhHHHHhhcccceeEEEEe-CCcEEEEEecCC------------
Confidence 4567888888874 22222 11223345555666666555555433444 235555554332
Q ss_pred CCCchhhhhHHHHHhhhhcccce-eEEE
Q psy4857 121 TNLKYCNVLTGVLRGACEMVQLD-ITSK 147 (327)
Q Consensus 121 ~~L~ysn~lcGvirGaLe~v~~~-v~~~ 147 (327)
..-..+.+|+++|+|+.++.+ ++++
T Consensus 138 --~~~~~f~~G~l~~aLe~~Ga~~~~V~ 163 (179)
T TIGR02265 138 --FMPPAYHEGVLHAALRAVGARDVRVR 163 (179)
T ss_pred --CCchHHHHHHHHHHHHHcCCCCCEEE
Confidence 233678999999999998844 5544
No 41
>COG1719 Predicted hydrocarbon binding protein (contains V4R domain) [General function prediction only]
Probab=21.20 E-value=1.6e+02 Score=26.12 Aligned_cols=131 Identities=17% Similarity=0.164 Sum_probs=70.2
Q ss_pred hhHHhhhHHHHHHHHHhhcCCHHHHHHHHHHhchhhhHHHHHHHHhhcCCCCccchHHHHHHHHHHHHHhhCCCCccccC
Q psy4857 164 SELFTLTYGALVSQLLKDYDNVEDVNKQLDRMGYNIGIRLIEDFLARTQSTRCYDFKETAEKIQLGFRIYLGISPNISNW 243 (327)
Q Consensus 164 ~elf~ltYGalV~Ql~~d~e~~~evn~qL~~mGynIG~RLieefLak~~~~rc~~f~~t~e~Ik~~~KmflGi~a~v~~~ 243 (327)
-+..++-++++. - ++.+. ...+..-+.+.|+.+|.+++. -....+..++++- |+--.+ .+..+
T Consensus 26 ~~~~~~~~~~~~-~-~~~~~-~~~~~~~~y~~G~~~G~~l~~----------~~~~~~~~~f~~~-~~~~~~---~v~~~ 88 (158)
T COG1719 26 IEVDAFLIAALR-A-LKKYL-GIGAEPVLYEAGKEIGKALIK----------EKLIEELENFLEF-WEEVGG---GVLEV 88 (158)
T ss_pred ccHHHHHHHHHH-H-HHHHh-ccCcHHHHHHHHHHHHHHhcc----------hhchHHHHHHHHH-HHhhcc---eEEEc
Confidence 345555566655 1 22222 233445688999999999984 1112233233322 322222 22222
Q ss_pred CCCCCeEEEEecCCccccceeccCCCCCCchhhhhHHHHHhhhhcc-cceEEEEEeeeccCCCCceEEEEEech
Q psy4857 244 SAGGDEFSLIFETNPMLEFVELPDNCTNLKYCNVLTGVLRGACEMV-QLDITSKFIQDQLKGDNVTELRVKFIK 316 (327)
Q Consensus 244 ~~~~~ef~l~~d~NPL~~FVelP~~~~~L~ysn~lcGvIrGaLe~v-~~~V~~~fv~d~l~gd~~tei~ik~~~ 316 (327)
..+..- .+.+.+.|.. .-+|. .+=-=+.+-+|+|.|.|+.. .=++.|+=++-...|++.-+++|+...
T Consensus 89 ~~~~~~-~v~v~~c~~c--~~~p~--~~ePvC~~~aG~iag~l~~~~~k~~~v~Et~C~~~G~~~C~F~i~~~~ 157 (158)
T COG1719 89 EEEEPL-VVEVYDCIEC--AGLPG--IGEPVCHLEAGFIAGFLEEILGKKVEVEETECAAEGDDRCVFEIRLKD 157 (158)
T ss_pred ccCCCc-eEEEEcCchh--hcCCC--CCCcchhHHhhHHHHHHHHHhCCCeEEEEEEEeecCCCceEEEEEecC
Confidence 221111 1222333311 11443 22234678899999999987 333666666777999999999998753
Done!