Query psy4857
Match_columns 327
No_of_seqs 216 out of 395
Neff 4.8
Searched_HMMs 29240
Date Fri Aug 16 19:25:56 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy4857.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/4857hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3cue_D Transport protein parti 100.0 1.2E-57 4.3E-62 411.5 15.3 170 158-327 21-193 (193)
2 1sz7_A BET3 homolog, trafficki 100.0 2.1E-57 7.1E-62 412.0 16.0 170 158-327 19-189 (200)
3 1sz7_A BET3 homolog, trafficki 100.0 4.1E-54 1.4E-58 390.4 13.3 163 2-164 11-175 (200)
4 3cue_D Transport protein parti 100.0 5.1E-54 1.7E-58 387.9 11.0 157 8-164 20-179 (193)
5 2j3w_B ZGC 92866, trafficking 100.0 3.2E-47 1.1E-51 342.4 11.3 156 2-164 14-173 (188)
6 2j3w_B ZGC 92866, trafficking 100.0 1.4E-45 4.8E-50 331.7 14.2 151 160-318 22-178 (188)
7 3cue_B Transport protein parti 100.0 1.4E-41 4.6E-46 321.1 11.2 158 2-164 47-269 (283)
8 3cue_B Transport protein parti 100.0 3.5E-40 1.2E-44 311.5 12.0 157 158-318 53-274 (283)
9 2c0j_B R32611_2; palmitate; HE 100.0 2.1E-40 7.1E-45 291.1 9.1 138 13-153 3-148 (160)
10 2c0j_B R32611_2; palmitate; HE 100.0 4.2E-40 1.4E-44 289.1 10.5 149 162-316 3-159 (160)
11 2bjn_A TPC6, trafficking prote 100.0 6.2E-40 2.1E-44 287.9 10.2 138 13-153 4-148 (160)
12 2bjn_A TPC6, trafficking prote 100.0 6.6E-39 2.3E-43 281.4 11.7 150 161-316 3-159 (160)
13 2kii_A Putative uncharacterize 91.2 1.5 5E-05 38.1 10.1 125 174-316 50-180 (181)
14 2oso_A Hypothetical protein MJ 89.6 1.2 4E-05 38.3 8.0 104 192-317 53-160 (163)
15 2oso_A Hypothetical protein MJ 86.7 1.1 3.6E-05 38.6 5.8 121 12-159 27-151 (163)
16 3tfg_A ALR2278 protein; heme-b 83.3 11 0.00039 32.6 11.0 91 213-317 91-184 (189)
17 3sj5_A Methyl-accepting chemot 76.6 9.4 0.00032 33.3 8.2 123 174-318 51-182 (188)
18 2kii_A Putative uncharacterize 64.9 26 0.0009 30.0 8.3 115 25-157 50-170 (181)
19 1hks_A Heat-shock transcriptio 48.1 18 0.00061 28.8 4.0 54 75-130 6-60 (106)
20 3sj5_A Methyl-accepting chemot 40.4 1.1E+02 0.0037 26.4 8.2 77 65-155 89-167 (188)
21 3tfg_A ALR2278 protein; heme-b 38.0 59 0.002 28.0 6.1 79 65-157 92-173 (189)
22 1hks_A Heat-shock transcriptio 31.6 47 0.0016 26.3 4.1 53 225-279 7-60 (106)
23 3ci9_A Heat shock factor-bindi 30.7 42 0.0014 23.6 3.2 28 23-50 12-40 (48)
24 2ve8_A FTSK, DNA translocase F 23.2 1.1E+02 0.0036 23.3 4.4 38 22-61 12-50 (73)
25 2l7q_A Conserved protein found 20.3 46 0.0016 27.8 2.0 28 290-317 11-38 (124)
26 2ldu_A Heat shock factor prote 20.2 26 0.00088 28.9 0.5 61 74-143 18-81 (125)
No 1
>3cue_D Transport protein particle 22 kDa subunit; membrane traffic, GEF, tethering complex, RAB activation, GU nucleotide exchange factor; HET: PLM; 3.70A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.2e-57 Score=411.45 Aligned_cols=170 Identities=53% Similarity=0.899 Sum_probs=165.4
Q ss_pred chhhhhhhHHhhhHHHHHHHHHhhcCC-HHHHHHHHHHhchhhhHHHHHHHHhhcCCCCccchHHHHHHH-HHHHHHhhC
Q psy4857 158 VTELRNSELFTLTYGALVSQLLKDYDN-VEDVNKQLDRMGYNIGIRLIEDFLARTQSTRCYDFKETAEKI-QLGFRIYLG 235 (327)
Q Consensus 158 ~tEi~~~elf~ltYGalV~Ql~~d~e~-~~evn~qL~~mGynIG~RLieefLak~~~~rc~~f~~t~e~I-k~~~KmflG 235 (327)
+++.++.|+|+||||+||+||++|+++ ++++|+||++||||||.||+|+|++|++.+||+++++++++| |++||||||
T Consensus 21 ~~~~Vs~s~f~ll~~elV~q~~~~~~~~~~ev~~rLe~mGy~IG~RLiE~~~~r~~~~R~~~~le~l~fI~k~~Wk~lfg 100 (193)
T 3cue_D 21 KTEKINTELFTLTYGSIVAQLCQDYERDFNKVNDHLYSMGYNIGCRLIEDFLARTALPRCENLVKTSEVLSKCAFKIFLN 100 (193)
T ss_dssp SSCEEEHHHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHHHHHHHHTCCCCCSSHHHHHHHHHHHHHHHHSS
T ss_pred chhhccHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHhCHHHHHHHHHHHHhccCCCccCCHHHHHHHHHHHHHHHHhC
Confidence 466779999999999999999999995 999999999999999999999999999999999999999999 999999999
Q ss_pred CCCccccCCCCCCeEEEEecCCccccceeccCCC-CCCchhhhhHHHHHhhhhcccceEEEEEeeeccCCCCceEEEEEe
Q psy4857 236 ISPNISNWSAGGDEFSLIFETNPMLEFVELPDNC-TNLKYCNVLTGVLRGACEMVQLDITSKFIQDQLKGDNVTELRVKF 314 (327)
Q Consensus 236 i~a~v~~~~~~~~ef~l~~d~NPL~~FVelP~~~-~~L~ysn~lcGvIrGaLe~v~~~V~~~fv~d~l~gd~~tei~ik~ 314 (327)
++|++.+|++++++|+|++|+|||++|||+|+++ +.|||+|++||||||||+|++|+|+|||++|+++|+++|+|+|||
T Consensus 101 k~~d~L~~t~~~~~y~L~~d~nPl~~fv~lP~~~~~~l~y~~f~cGIIrGaL~~~g~~Vta~~~~d~l~g~~~t~~~Ikf 180 (193)
T 3cue_D 101 ITPNITNWSHNKDTFSLILDENPLADFVELPMDAMKSLWYSNILCGVLKGSLEMVQLDCDVWFVSDILRGDSQTEIKVKL 180 (193)
T ss_dssp CCCCCBCCCTTSCCCBCCBSCCGGGSSCCCCTTTTTSCCTTHHHHHHHHHHHHHTTCCCEEEECCCSSSSSSCBCEEEEC
T ss_pred CCCccceecCCCCEEEEEECCchhhhheeCcHhHHhCcchhhhHHHHHHHHHHhCCCEEEEEEeeccCCCCCCEEEEEEE
Confidence 9999999999999999988999999999999999 999999999999999999999999999999999999999999999
Q ss_pred chhccccCCCCCC
Q psy4857 315 IKTIQDAIPAGED 327 (327)
Q Consensus 315 ~~~~~~~~p~~~~ 327 (327)
.++++|++|++||
T Consensus 181 ~~~v~d~~~~~~~ 193 (193)
T 3cue_D 181 NRILKDEIPIGED 193 (193)
T ss_dssp CCCCSCCCCCTTC
T ss_pred hhhhhcccCCCCC
Confidence 9999999999997
No 2
>1sz7_A BET3 homolog, trafficking protein particle complex subunit 3; alpha-beta plait, trapp complex, palmitoylated, transport PR; HET: PLM; 1.55A {Homo sapiens} PDB: 2cfh_A* 2pwn_A* 3kxc_A* 1wc8_A* 2j3w_D* 2j3r_A* 2j3t_A* 1wc9_A* 2c0j_A*
Probab=100.00 E-value=2.1e-57 Score=411.98 Aligned_cols=170 Identities=64% Similarity=1.105 Sum_probs=155.9
Q ss_pred chhhhhhhHHhhhHHHHHHHHHhhcCCHHHHHHHHHHhchhhhHHHHHHHHhhcCCCCccchHHHHHHH-HHHHHHhhCC
Q psy4857 158 VTELRNSELFTLTYGALVSQLLKDYDNVEDVNKQLDRMGYNIGIRLIEDFLARTQSTRCYDFKETAEKI-QLGFRIYLGI 236 (327)
Q Consensus 158 ~tEi~~~elf~ltYGalV~Ql~~d~e~~~evn~qL~~mGynIG~RLieefLak~~~~rc~~f~~t~e~I-k~~~KmflGi 236 (327)
+++.++.|+|+||||+||+|+++|+++++++|+||++||||||.||+|+|++|++.+||+++++|+++| |++||||||+
T Consensus 19 ~~~eVs~s~f~lly~eiV~~~~~~~~~~~ev~~rLe~mGy~IG~RLiE~~~~r~~~~R~~d~le~l~fI~k~~Wk~lFgk 98 (200)
T 1sz7_A 19 ESKKMSSELFTLTYGALVTQLCKDYENDEDVNKQLDKMGFNIGVRLIEDFLARSNVGRCHDFRETADVIAKVAFKMYLGI 98 (200)
T ss_dssp ---CCCSHHHHHHHHHHHHHHHHHHCSHHHHHHHHHHHHHHHHHHHHHHHHHHSSCCSCCCHHHHHHHHHHTHHHHHHSC
T ss_pred ccchhcHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHhCHHHhHHHHHHHHhccCCCccCCHHHHHHHHHHHHHHHHhCC
Confidence 355679999999999999999999999999999999999999999999999999999999999999999 9999999999
Q ss_pred CCccccCCCCCCeEEEEecCCccccceeccCCCCCCchhhhhHHHHHhhhhcccceEEEEEeeeccCCCCceEEEEEech
Q psy4857 237 SPNISNWSAGGDEFSLIFETNPMLEFVELPDNCTNLKYCNVLTGVLRGACEMVQLDITSKFIQDQLKGDNVTELRVKFIK 316 (327)
Q Consensus 237 ~a~v~~~~~~~~ef~l~~d~NPL~~FVelP~~~~~L~ysn~lcGvIrGaLe~v~~~V~~~fv~d~l~gd~~tei~ik~~~ 316 (327)
+|++++|++++++|+|++|+|||++|||+|++++.|||+|++||||||||+|++|+|+|||++|+|+|+++|+|+|||.+
T Consensus 99 ~ad~L~~t~~~~~Y~L~~D~nPL~~fvslP~~~~~l~y~~f~cGIIrGaL~~lg~~Vta~~~~d~l~g~~~t~~~Ikf~~ 178 (200)
T 1sz7_A 99 TPSITNWSPAGDEFSLILENNPLVDFVELPDNHSSLIYSNLLCGVLRGALEMVQMAVEAKFVQDTLKGDGVTEIRMRFIR 178 (200)
T ss_dssp CCEEECCCTTSCEEEEEESSCTTCTTCCCCGGGTTCCTTTHHHHHHHHHHHTTTEEEEEEEEECGGGTCSSEEEEEEEEE
T ss_pred CCccceecCCCCEEEEEECCcHHHHhccCCccccCCchhhhHHHHHHHHHHhCCCEEEEEEEecccCCCCCEEEEEEEhh
Confidence 99999999999999998999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hccccCCCCCC
Q psy4857 317 TIQDAIPAGED 327 (327)
Q Consensus 317 ~~~~~~p~~~~ 327 (327)
.++|++|++||
T Consensus 179 ~v~~~~~~~~~ 189 (200)
T 1sz7_A 179 RIEDNLPAGEE 189 (200)
T ss_dssp EC---------
T ss_pred hhhhccCCCcc
Confidence 99999999986
No 3
>1sz7_A BET3 homolog, trafficking protein particle complex subunit 3; alpha-beta plait, trapp complex, palmitoylated, transport PR; HET: PLM; 1.55A {Homo sapiens} PDB: 2cfh_A* 2pwn_A* 3kxc_A* 1wc8_A* 2j3w_D* 2j3r_A* 2j3t_A* 1wc9_A* 2c0j_A*
Probab=100.00 E-value=4.1e-54 Score=390.41 Aligned_cols=163 Identities=65% Similarity=1.085 Sum_probs=150.3
Q ss_pred CCCC-CCcCchhhHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHhchhhhHHhHHHHHhhcCCCCccchHHHHHHH-HH
Q psy4857 2 ARQG-NRLDSKKVNSELFTLTYGALVSQLLKDYDNVEDVNKQLDRMGYNIGIRLIEDFLARTQSTRCYDFKETAEKI-QL 79 (327)
Q Consensus 2 ~r~~-~~~~~~kvn~elfaltyg~lV~ql~~d~e~~~evn~~L~~mGynIG~RlieefLar~~~~rc~~~~~t~e~I-~~ 79 (327)
||+. +++|.+|||+|+|+|||||||+|+++|+++++++|+||++||||||.||+|+|++|++.+||.+++++++|| |+
T Consensus 11 ~~~~~~~~~~~eVs~s~f~lly~eiV~~~~~~~~~~~ev~~rLe~mGy~IG~RLiE~~~~r~~~~R~~d~le~l~fI~k~ 90 (200)
T 1sz7_A 11 SRQANRGTESKKMSSELFTLTYGALVTQLCKDYENDEDVNKQLDKMGFNIGVRLIEDFLARSNVGRCHDFRETADVIAKV 90 (200)
T ss_dssp -----------CCCSHHHHHHHHHHHHHHHHHHCSHHHHHHHHHHHHHHHHHHHHHHHHHHSSCCSCCCHHHHHHHHHHT
T ss_pred hhhhhhhcccchhcHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHhCHHHhHHHHHHHHhccCCCccCCHHHHHHHHHHH
Confidence 4554 457888999999999999999999999999999999999999999999999999999999999999999999 99
Q ss_pred HHHHhhCCCCcccccCCCCCeEEEEecCCccccceeccCCCCCCchhhhhHHHHHhhhhcccceeEEEEeeeccCCCcch
Q psy4857 80 GFRIYLGISPNISNWSAGGDEFSLIFETNPMLEFVELPDNCTNLKYCNVLTGVLRGACEMVQLDITSKFIQDQLKGDNVT 159 (327)
Q Consensus 80 ~~K~flg~~a~v~~~~~~~~e~~l~~d~nPL~~FVelP~~~~~L~ysn~lcGvirGaLe~v~~~v~~~fv~d~l~gd~~t 159 (327)
+||+|||++|++++|++++++|+|++|+|||++|||+|+++++|||+||+||||||||+|++|+|+|||++|.|+|+++|
T Consensus 91 ~Wk~lFgk~ad~L~~t~~~~~Y~L~~D~nPL~~fvslP~~~~~l~y~~f~cGIIrGaL~~lg~~Vta~~~~d~l~g~~~t 170 (200)
T 1sz7_A 91 AFKMYLGITPSITNWSPAGDEFSLILENNPLVDFVELPDNHSSLIYSNLLCGVLRGALEMVQMAVEAKFVQDTLKGDGVT 170 (200)
T ss_dssp HHHHHHSCCCEEECCCTTSCEEEEEESSCTTCTTCCCCGGGTTCCTTTHHHHHHHHHHHTTTEEEEEEEEECGGGTCSSE
T ss_pred HHHHHhCCCCccceecCCCCEEEEEECCcHHHHhccCCccccCCchhhhHHHHHHHHHHhCCCEEEEEEEecccCCCCCE
Confidence 99999999999999999999999989999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhh
Q psy4857 160 ELRNS 164 (327)
Q Consensus 160 Ei~~~ 164 (327)
+++++
T Consensus 171 ~~~Ik 175 (200)
T 1sz7_A 171 EIRMR 175 (200)
T ss_dssp EEEEE
T ss_pred EEEEE
Confidence 98765
No 4
>3cue_D Transport protein particle 22 kDa subunit; membrane traffic, GEF, tethering complex, RAB activation, GU nucleotide exchange factor; HET: PLM; 3.70A {Saccharomyces cerevisiae}
Probab=100.00 E-value=5.1e-54 Score=387.89 Aligned_cols=157 Identities=52% Similarity=0.893 Sum_probs=152.0
Q ss_pred cCchhhHHHHHHHHHHHHHHHHHHhcCC-HHHHHHHHHHhchhhhHHhHHHHHhhcCCCCccchHHHHHHH-HHHHHHhh
Q psy4857 8 LDSKKVNSELFTLTYGALVSQLLKDYDN-VEDVNKQLDRMGYNIGIRLIEDFLARTQSTRCYDFKETAEKI-QLGFRIYL 85 (327)
Q Consensus 8 ~~~~kvn~elfaltyg~lV~ql~~d~e~-~~evn~~L~~mGynIG~RlieefLar~~~~rc~~~~~t~e~I-~~~~K~fl 85 (327)
++.+|||+|+|+|||||||+|+++|+++ ++++|+||++||||||.||+|+|++|++.+||.+++++++|| +++||+||
T Consensus 20 ~~~~~Vs~s~f~ll~~elV~q~~~~~~~~~~ev~~rLe~mGy~IG~RLiE~~~~r~~~~R~~~~le~l~fI~k~~Wk~lf 99 (193)
T 3cue_D 20 NKTEKINTELFTLTYGSIVAQLCQDYERDFNKVNDHLYSMGYNIGCRLIEDFLARTALPRCENLVKTSEVLSKCAFKIFL 99 (193)
T ss_dssp SSSCEEEHHHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHHHHHHHHTCCCCCSSHHHHHHHHHHHHHHHHS
T ss_pred cchhhccHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHhCHHHHHHHHHHHHhccCCCccCCHHHHHHHHHHHHHHHHh
Confidence 3788999999999999999999999975 999999999999999999999999999999999999999999 99999999
Q ss_pred CCCCcccccCCCCCeEEEEecCCccccceeccCCC-CCCchhhhhHHHHHhhhhcccceeEEEEeeeccCCCcchhhhhh
Q psy4857 86 GISPNISNWSAGGDEFSLIFETNPMLEFVELPDNC-TNLKYCNVLTGVLRGACEMVQLDITSKFIQDQLKGDNVTELRNS 164 (327)
Q Consensus 86 g~~a~v~~~~~~~~e~~l~~d~nPL~~FVelP~~~-~~L~ysn~lcGvirGaLe~v~~~v~~~fv~d~l~gd~~tEi~~~ 164 (327)
|++|++++|++++++|+|++|+|||++|||+|+++ ++|||+||+||||||||+|+||+|+|||++|.|+|+++|+++++
T Consensus 100 gk~~d~L~~t~~~~~y~L~~d~nPl~~fv~lP~~~~~~l~y~~f~cGIIrGaL~~~g~~Vta~~~~d~l~g~~~t~~~Ik 179 (193)
T 3cue_D 100 NITPNITNWSHNKDTFSLILDENPLADFVELPMDAMKSLWYSNILCGVLKGSLEMVQLDCDVWFVSDILRGDSQTEIKVK 179 (193)
T ss_dssp SCCCCCBCCCTTSCCCBCCBSCCGGGSSCCCCTTTTTSCCTTHHHHHHHHHHHHHTTCCCEEEECCCSSSSSSCBCEEEE
T ss_pred CCCCccceecCCCCEEEEEECCchhhhheeCcHhHHhCcchhhhHHHHHHHHHHhCCCEEEEEEeeccCCCCCCEEEEEE
Confidence 99999999999999999989999999999999999 99999999999999999999999999999999999999998765
No 5
>2j3w_B ZGC 92866, trafficking protein particle complex protein 2; multisubunit tethering factor, trapp, palmitate, transport, lipoprotein; HET: PLM; 2.1A {Brachydanio rerio} SCOP: d.278.1.2 PDB: 2j3r_B*
Probab=100.00 E-value=3.2e-47 Score=342.35 Aligned_cols=156 Identities=15% Similarity=0.247 Sum_probs=135.3
Q ss_pred CCCCCCcCchhhHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHhchhhhHHhHHHHHhhcC-CCCccchHHHHHHH-HH
Q psy4857 2 ARQGNRLDSKKVNSELFTLTYGALVSQLLKDYDNVEDVNKQLDRMGYNIGIRLIEDFLARTQ-STRCYDFKETAEKI-QL 79 (327)
Q Consensus 2 ~r~~~~~~~~kvn~elfaltyg~lV~ql~~d~e~~~evn~~L~~mGynIG~RlieefLar~~-~~rc~~~~~t~e~I-~~ 79 (327)
.||++|++ ++||+|+|+|||||||+|+++++++++|+|+||++||||||.||+|+|++|++ .+||++++++++|| |.
T Consensus 14 ~~~l~~~~-~~Vs~s~f~ll~~EiV~~~~~~~~~~~ev~~~Le~mGy~IG~RLiE~~~~r~~~~~R~~d~ld~l~fI~k~ 92 (188)
T 2j3w_B 14 ERSLTRPK-TEVSVSAFALLFSEMVQYCQSRVYSVSELQARLADMGQGVGASLLDVLVMREKNGKRETKVLNILLFIKVN 92 (188)
T ss_dssp -------C-CEEEHHHHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCCCSHHHHHHHHHTH
T ss_pred cCccccch-hHhhHHHHHHHHHHHHHHHHhhcCchHHHHHHHHHhhHHHhHHHHHHHHhhcCCCcccCCHHHHHHHHHHH
Confidence 58899888 56999999999999999888888999999999999999999999999999986 59999999999999 99
Q ss_pred HHHHhhCCCCccccc-CCCCCeEEEEecCCccc-cceeccCCCCCCchhhhhHHHHHhhhhcccceeEEEEeeeccCCCc
Q psy4857 80 GFRIYLGISPNISNW-SAGGDEFSLIFETNPML-EFVELPDNCTNLKYCNVLTGVLRGACEMVQLDITSKFIQDQLKGDN 157 (327)
Q Consensus 80 ~~K~flg~~a~v~~~-~~~~~e~~l~~d~nPL~-~FVelP~~~~~L~ysn~lcGvirGaLe~v~~~v~~~fv~d~l~gd~ 157 (327)
+||+|||++|+.++| +++.++|+| +|+|||. +|||+|+++++|||+||+||||||||+|+||+++|++.. ++
T Consensus 93 ~Wk~lfgk~~d~L~~st~~~~~y~i-~D~npl~~~fvs~p~~~~~l~y~~f~cGiIrGaL~~~g~~~~Vta~~-----~~ 166 (188)
T 2j3w_B 93 VWKALFGKEADKLEQANDDDKTYYI-IEKEPLINAYISVPKENSTLNCAAFTGGIVEAILTHSGFPAKVTVHW-----HK 166 (188)
T ss_dssp HHHHHHSSCCSEEEEETTEEEEEEE-EESSCGGGGTCSSCCSSCCSHHHHHHHHHHHHHHHHTTCCEEEEEEE-----SS
T ss_pred HHHHHhCCCccccccccCCCCEEEE-EcCCcceeeeeecCccccCchhHHHHHHHHHHHHHHCCCceEEEEEe-----CC
Confidence 999999999999999 666788866 6999999 699999999999999999999999999999987755444 55
Q ss_pred chhhhhh
Q psy4857 158 VTELRNS 164 (327)
Q Consensus 158 ~tEi~~~ 164 (327)
.|+++++
T Consensus 167 ~t~f~Ik 173 (188)
T 2j3w_B 167 GTTLMIK 173 (188)
T ss_dssp SEEEEEE
T ss_pred CEEEEEE
Confidence 6776543
No 6
>2j3w_B ZGC 92866, trafficking protein particle complex protein 2; multisubunit tethering factor, trapp, palmitate, transport, lipoprotein; HET: PLM; 2.1A {Brachydanio rerio} SCOP: d.278.1.2 PDB: 2j3r_B*
Probab=100.00 E-value=1.4e-45 Score=331.68 Aligned_cols=151 Identities=15% Similarity=0.299 Sum_probs=136.9
Q ss_pred hhhhhhHHhhhHHHHHHHHHhhcCCHHHHHHHHHHhchhhhHHHHHHHHhhcC-CCCccchHHHHHHH-HHHHHHhhCCC
Q psy4857 160 ELRNSELFTLTYGALVSQLLKDYDNVEDVNKQLDRMGYNIGIRLIEDFLARTQ-STRCYDFKETAEKI-QLGFRIYLGIS 237 (327)
Q Consensus 160 Ei~~~elf~ltYGalV~Ql~~d~e~~~evn~qL~~mGynIG~RLieefLak~~-~~rc~~f~~t~e~I-k~~~KmflGi~ 237 (327)
+.++.|+|+||||+||+|+.++.++++|+|+||++||||||.||+|+|++|++ .+||+++++++++| |++||||||++
T Consensus 22 ~~Vs~s~f~ll~~EiV~~~~~~~~~~~ev~~~Le~mGy~IG~RLiE~~~~r~~~~~R~~d~ld~l~fI~k~~Wk~lfgk~ 101 (188)
T 2j3w_B 22 TEVSVSAFALLFSEMVQYCQSRVYSVSELQARLADMGQGVGASLLDVLVMREKNGKRETKVLNILLFIKVNVWKALFGKE 101 (188)
T ss_dssp CEEEHHHHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCCCSHHHHHHHHHTHHHHHHHSSC
T ss_pred hHhhHHHHHHHHHHHHHHHHhhcCchHHHHHHHHHhhHHHhHHHHHHHHhhcCCCcccCCHHHHHHHHHHHHHHHHhCCC
Confidence 44599999999999995555555799999999999999999999999999986 59999999999999 99999999999
Q ss_pred CccccC-CCCCCeEEEEecCCccc-cceeccCCCCCCchhhhhHHHHHhhhhcccce--EEEEEeeeccCCCCceEEEEE
Q psy4857 238 PNISNW-SAGGDEFSLIFETNPML-EFVELPDNCTNLKYCNVLTGVLRGACEMVQLD--ITSKFIQDQLKGDNVTELRVK 313 (327)
Q Consensus 238 a~v~~~-~~~~~ef~l~~d~NPL~-~FVelP~~~~~L~ysn~lcGvIrGaLe~v~~~--V~~~fv~d~l~gd~~tei~ik 313 (327)
|++.+| +++.++|+| +|+|||. +|||+|+++++|||+|++||||||||+|++|+ |+||+ ++.|+|+||
T Consensus 102 ~d~L~~st~~~~~y~i-~D~npl~~~fvs~p~~~~~l~y~~f~cGiIrGaL~~~g~~~~Vta~~-------~~~t~f~Ik 173 (188)
T 2j3w_B 102 ADKLEQANDDDKTYYI-IEKEPLINAYISVPKENSTLNCAAFTGGIVEAILTHSGFPAKVTVHW-------HKGTTLMIK 173 (188)
T ss_dssp CSEEEEETTEEEEEEE-EESSCGGGGTCSSCCSSCCSHHHHHHHHHHHHHHHHTTCCEEEEEEE-------SSSEEEEEE
T ss_pred ccccccccCCCCEEEE-EcCCcceeeeeecCccccCchhHHHHHHHHHHHHHHCCCceEEEEEe-------CCCEEEEEE
Confidence 999998 667788866 6999999 69999999999999999999999999999997 56666 678999999
Q ss_pred echhc
Q psy4857 314 FIKTI 318 (327)
Q Consensus 314 ~~~~~ 318 (327)
|.+..
T Consensus 174 f~~~v 178 (188)
T 2j3w_B 174 FDESV 178 (188)
T ss_dssp ECHHH
T ss_pred ecHHH
Confidence 99764
No 7
>3cue_B Transport protein particle 31 kDa subunit; membrane traffic, GEF, tethering complex, RAB activation, GU nucleotide exchange factor; HET: PLM; 3.70A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.4e-41 Score=321.08 Aligned_cols=158 Identities=15% Similarity=0.147 Sum_probs=135.1
Q ss_pred CCCCCCcCchhhHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHhchhhhHHhHHHHHhhcCC-----------------
Q psy4857 2 ARQGNRLDSKKVNSELFTLTYGALVSQLLKDYDNVEDVNKQLDRMGYNIGIRLIEDFLARTQS----------------- 64 (327)
Q Consensus 2 ~r~~~~~~~~kvn~elfaltyg~lV~ql~~d~e~~~evn~~L~~mGynIG~RlieefLar~~~----------------- 64 (327)
.|+|++ |.++||+|+|+|||+|||+|++++.++++|+|+||++|||+||.||+|+|+.|+..
T Consensus 47 ~~~l~~-~~~~Vs~s~fafLf~EmV~~~~~~~~~~~e~e~rLe~mGy~IG~RLlE~l~~R~~~~~~~~~~~~~~~~s~~s 125 (283)
T 3cue_B 47 SESLLF-KRQEASLSAMAFLFQEMISQLHRTCKTAGDFETKLSDYGHNIGIRLLELLNFRASVSPSSLPRASAFLSQNES 125 (283)
T ss_dssp ---------CEEEHHHHHHHHHHHHHHHHHHCSSHHHHHHHHHHHHHHHHHHHHHHCC----------------------
T ss_pred cccccc-CcchhhHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHhhhhhhHHHHHHHHhhcccCcccccccccccccccc
Confidence 578887 44569999999999999999999999999999999999999999999988888642
Q ss_pred ---------------------------------------------CCccchHHHHHHH-HHHHHHhhCCCCccc-ccCCC
Q psy4857 65 ---------------------------------------------TRCYDFKETAEKI-QLGFRIYLGISPNIS-NWSAG 97 (327)
Q Consensus 65 ---------------------------------------------~rc~~~~~t~e~I-~~~~K~flg~~a~v~-~~~~~ 97 (327)
+||.+++|+++|| |.+||||||++|+.+ +|+.+
T Consensus 126 s~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~la~r~t~~~~R~~d~ldilkFIcK~~Wk~lFgKqaD~Lektn~~ 205 (283)
T 3cue_B 126 SSKLSNASNSPGMLANSSTATSASANERLQEKQTESLSNYITKMRRRDLKILDILQFIHGTLWSYLFNHVSDDLVKSSER 205 (283)
T ss_dssp ---------------------------------------CCCCCSSSCCCHHHHHHHHHHHHHHHTTSSCCSEEEECSSC
T ss_pred ccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHhCCCcchhccccCC
Confidence 8999999999999 999999999999999 57778
Q ss_pred CCeEEEEecCCccccceeccCCCCCCchhhhhHHHHHhhhhcccceeEEEEeeeccC-CCcchhhhhh
Q psy4857 98 GDEFSLIFETNPMLEFVELPDNCTNLKYCNVLTGVLRGACEMVQLDITSKFIQDQLK-GDNVTELRNS 164 (327)
Q Consensus 98 ~~e~~l~~d~nPL~~FVelP~~~~~L~ysn~lcGvirGaLe~v~~~v~~~fv~d~l~-gd~~tEi~~~ 164 (327)
+++|+|+.++|||++||++ ++|||+||+||||||||+|++|+++|++..+.++ ++++|+++++
T Consensus 206 ~geYvL~Dn~~pLt~fVs~----~~L~y~af~cGIIRGAL~~lGf~a~VTA~~~p~~~~~~~T~~~Ik 269 (283)
T 3cue_B 206 DNEYMIVDNFPTLTQFIPG----ENVSCEYFVCGIIKGFLFNAGFPCGVTAHRMPQGGHSQRTVYLIQ 269 (283)
T ss_dssp SSCEEEEESSCSSSCSSCT----TCCHHHHHHHHHHHHHHHHHTSCCCCEEECCCCSSCTTCEEEECC
T ss_pred CCEEEEEeCchHHHhhhcc----CCcchhhhHHHHHHHHHHhCCCceEEEEEEcccccCCCceEEEEE
Confidence 8999999999999999998 4799999999999999999999988888888887 6667876553
No 8
>3cue_B Transport protein particle 31 kDa subunit; membrane traffic, GEF, tethering complex, RAB activation, GU nucleotide exchange factor; HET: PLM; 3.70A {Saccharomyces cerevisiae}
Probab=100.00 E-value=3.5e-40 Score=311.47 Aligned_cols=157 Identities=15% Similarity=0.188 Sum_probs=139.3
Q ss_pred chhhhhhhHHhhhHHHHHHHHHhhcCCHHHHHHHHHHhchhhhHHHHHHHHhhcC-------------------------
Q psy4857 158 VTELRNSELFTLTYGALVSQLLKDYDNVEDVNKQLDRMGYNIGIRLIEDFLARTQ------------------------- 212 (327)
Q Consensus 158 ~tEi~~~elf~ltYGalV~Ql~~d~e~~~evn~qL~~mGynIG~RLieefLak~~------------------------- 212 (327)
+.+.++.|+|+|+|++||+|++++.++++|+|++|++|||+||.||+|.|+.|+.
T Consensus 53 ~~~~Vs~s~fafLf~EmV~~~~~~~~~~~e~e~rLe~mGy~IG~RLlE~l~~R~~~~~~~~~~~~~~~~s~~ss~~~~~~ 132 (283)
T 3cue_B 53 KRQEASLSAMAFLFQEMISQLHRTCKTAGDFETKLSDYGHNIGIRLLELLNFRASVSPSSLPRASAFLSQNESSSKLSNA 132 (283)
T ss_dssp --CEEEHHHHHHHHHHHHHHHHHHCSSHHHHHHHHHHHHHHHHHHHHHHCC-----------------------------
T ss_pred CcchhhHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHhhhhhhHHHHHHHHhhcccCccccccccccccccccccccccc
Confidence 3455699999999999999999999999999999999999999999998888764
Q ss_pred -------------------------------------CCCccchHHHHHHH-HHHHHHhhCCCCccc-cCCCCCCeEEEE
Q psy4857 213 -------------------------------------STRCYDFKETAEKI-QLGFRIYLGISPNIS-NWSAGGDEFSLI 253 (327)
Q Consensus 213 -------------------------------------~~rc~~f~~t~e~I-k~~~KmflGi~a~v~-~~~~~~~ef~l~ 253 (327)
.+||++++|+++|| |++||||||++|++. +|++++++|+|+
T Consensus 133 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~la~r~t~~~~R~~d~ldilkFIcK~~Wk~lFgKqaD~Lektn~~~geYvL~ 212 (283)
T 3cue_B 133 SNSPGMLANSSTATSASANERLQEKQTESLSNYITKMRRRDLKILDILQFIHGTLWSYLFNHVSDDLVKSSERDNEYMIV 212 (283)
T ss_dssp --------------------------------CCCCCSSSCCCHHHHHHHHHHHHHHHTTSSCCSEEEECSSCSSCEEEE
T ss_pred cccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHhCCCcchhccccCCCCEEEEE
Confidence 28999999999999 999999999999999 688888999999
Q ss_pred ecCCccccceeccCCCCCCchhhhhHHHHHhhhhcccceEEEEEeeeccC-CCCceEEEEEechhc
Q psy4857 254 FETNPMLEFVELPDNCTNLKYCNVLTGVLRGACEMVQLDITSKFIQDQLK-GDNVTELRVKFIKTI 318 (327)
Q Consensus 254 ~d~NPL~~FVelP~~~~~L~ysn~lcGvIrGaLe~v~~~V~~~fv~d~l~-gd~~tei~ik~~~~~ 318 (327)
.++|||++||++ ++|||+|++||||||||+|++|+++|++..+.++ ++++|+++|||.+.+
T Consensus 213 Dn~~pLt~fVs~----~~L~y~af~cGIIRGAL~~lGf~a~VTA~~~p~~~~~~~T~~~IkF~~~v 274 (283)
T 3cue_B 213 DNFPTLTQFIPG----ENVSCEYFVCGIIKGFLFNAGFPCGVTAHRMPQGGHSQRTVYLIQFDRQV 274 (283)
T ss_dssp ESSCSSSCSSCT----TCCHHHHHHHHHHHHHHHHHTSCCCCEEECCCCSSCTTCEEEECCCCHHH
T ss_pred eCchHHHhhhcc----CCcchhhhHHHHHHHHHHhCCCceEEEEEEcccccCCCceEEEEEecHHH
Confidence 999999999998 4799999999999999999999966666677776 677999999999875
No 9
>2c0j_B R32611_2; palmitate; HET: PLM; 2.20A {Homo sapiens} PDB: 2j3t_B*
Probab=100.00 E-value=2.1e-40 Score=291.05 Aligned_cols=138 Identities=15% Similarity=0.143 Sum_probs=117.7
Q ss_pred hHHHHHHHHHHHHHHHHHHhcCC-----HHHHHHHHHHhchhhhHHhHHHHHhhcCCCCccchHHHHHHH-HHHHHHhhC
Q psy4857 13 VNSELFTLTYGALVSQLLKDYDN-----VEDVNKQLDRMGYNIGIRLIEDFLARTQSTRCYDFKETAEKI-QLGFRIYLG 86 (327)
Q Consensus 13 vn~elfaltyg~lV~ql~~d~e~-----~~evn~~L~~mGynIG~RlieefLar~~~~rc~~~~~t~e~I-~~~~K~flg 86 (327)
+|.|+|+|||||||+|+++++++ .+++|+||++||||||.||+|+|+ |. .+||++++++++|| |.+||++||
T Consensus 3 ~s~s~f~~l~~elV~~~~~~~~~~~~~~~~~v~~~Le~mGy~IG~RLiE~~~-r~-~~r~~d~ld~l~fI~k~~Wk~~fg 80 (160)
T 2c0j_B 3 ADTVLFEFLHTEMVAELWAHDPDPGPGGQKMSLSVLEGMGFRVGQALGERLP-RE-TLAFREELDVLKFLCKDLWVAVFQ 80 (160)
T ss_dssp CCHHHHHHHHHHHHHHTC-----------CHHHHHHHHHHHHHHHHHHHHSC-GG-GGTTCCHHHHHHHHHTHHHHHHHS
T ss_pred hHHHHHHHHHHHHHHHHHHhccCcccccHHHHHHHHHHHhHHHhHHHHHHHh-hc-cCccCCHHHHHHHHHHHHHHHHhC
Confidence 58899999999999999999984 577899999999999999999888 64 68999999999999 999999999
Q ss_pred CCCcccccCCCCCeEEEEecCCccccceeccCCCC--CCchhhhhHHHHHhhhhcccceeEEEEeeecc
Q psy4857 87 ISPNISNWSAGGDEFSLIFETNPMLEFVELPDNCT--NLKYCNVLTGVLRGACEMVQLDITSKFIQDQL 153 (327)
Q Consensus 87 ~~a~v~~~~~~~~e~~l~~d~nPL~~FVelP~~~~--~L~ysn~lcGvirGaLe~v~~~v~~~fv~d~l 153 (327)
++++.++ +++.++|+|+.+++|+.+|||+|++++ .|||+|++||||||||++++++++|++-...+
T Consensus 81 k~~d~L~-t~~~~~y~l~dn~~~l~~~vs~p~~~~~~~l~y~~f~cGiIrGaL~~lg~~~~Vta~~~~~ 148 (160)
T 2c0j_B 81 KQMDSLR-TNHQGTYVLQDNSFPLLLPMASGLQYLEEAPKFLAFTCGLLRGALYTLGIESVVTASVAAL 148 (160)
T ss_dssp SCCSEEE-ECSSSEEEEEETTCGGGC----CGGGTTTGGGGTHHHHHHHHHHHHHTTCCCEEEEEESST
T ss_pred CcCccce-eCCCCEEEEECCCCcHHHHcCCCHHHhhhcchhHHHHHHHHHHHHHHCCCceEEEEeecCC
Confidence 9999887 678899999988888999999999998 99999999999999999999999988754433
No 10
>2c0j_B R32611_2; palmitate; HET: PLM; 2.20A {Homo sapiens} PDB: 2j3t_B*
Probab=100.00 E-value=4.2e-40 Score=289.13 Aligned_cols=149 Identities=15% Similarity=0.139 Sum_probs=124.4
Q ss_pred hhhhHHhhhHHHHHHHHHhhcCC-----HHHHHHHHHHhchhhhHHHHHHHHhhcCCCCccchHHHHHHH-HHHHHHhhC
Q psy4857 162 RNSELFTLTYGALVSQLLKDYDN-----VEDVNKQLDRMGYNIGIRLIEDFLARTQSTRCYDFKETAEKI-QLGFRIYLG 235 (327)
Q Consensus 162 ~~~elf~ltYGalV~Ql~~d~e~-----~~evn~qL~~mGynIG~RLieefLak~~~~rc~~f~~t~e~I-k~~~KmflG 235 (327)
.+.|+|+||||+||+|+++++++ .++||+||++||||||.||+|+|+ | +.+||++++|++++| |.+||++||
T Consensus 3 ~s~s~f~~l~~elV~~~~~~~~~~~~~~~~~v~~~Le~mGy~IG~RLiE~~~-r-~~~r~~d~ld~l~fI~k~~Wk~~fg 80 (160)
T 2c0j_B 3 ADTVLFEFLHTEMVAELWAHDPDPGPGGQKMSLSVLEGMGFRVGQALGERLP-R-ETLAFREELDVLKFLCKDLWVAVFQ 80 (160)
T ss_dssp CCHHHHHHHHHHHHHHTC-----------CHHHHHHHHHHHHHHHHHHHHSC-G-GGGTTCCHHHHHHHHHTHHHHHHHS
T ss_pred hHHHHHHHHHHHHHHHHHHhccCcccccHHHHHHHHHHHhHHHhHHHHHHHh-h-ccCccCCHHHHHHHHHHHHHHHHhC
Confidence 46799999999999999999984 577899999999999999999888 6 468999999999999 999999999
Q ss_pred CCCccccCCCCCCeEEEEecCCccccceeccCCCC--CCchhhhhHHHHHhhhhcccceEEEEEeeeccCCCCceEEEEE
Q psy4857 236 ISPNISNWSAGGDEFSLIFETNPMLEFVELPDNCT--NLKYCNVLTGVLRGACEMVQLDITSKFIQDQLKGDNVTELRVK 313 (327)
Q Consensus 236 i~a~v~~~~~~~~ef~l~~d~NPL~~FVelP~~~~--~L~ysn~lcGvIrGaLe~v~~~V~~~fv~d~l~gd~~tei~ik 313 (327)
++++..+ +++.++|+|+-+++|+.+|||+|++++ .|||+|++||||||||++++++++|++-... .+.+.+.||
T Consensus 81 k~~d~L~-t~~~~~y~l~dn~~~l~~~vs~p~~~~~~~l~y~~f~cGiIrGaL~~lg~~~~Vta~~~~---~p~~~f~i~ 156 (160)
T 2c0j_B 81 KQMDSLR-TNHQGTYVLQDNSFPLLLPMASGLQYLEEAPKFLAFTCGLLRGALYTLGIESVVTASVAA---LPVCKFQVV 156 (160)
T ss_dssp SCCSEEE-ECSSSEEEEEETTCGGGC----CGGGTTTGGGGTHHHHHHHHHHHHHTTCCCEEEEEESS---TTCEEEEEE
T ss_pred CcCccce-eCCCCEEEEECCCCcHHHHcCCCHHHhhhcchhHHHHHHHHHHHHHHCCCceEEEEeecC---CCceEEEEE
Confidence 9998877 678899999977778999999999998 8999999999999999999999777664433 346999999
Q ss_pred ech
Q psy4857 314 FIK 316 (327)
Q Consensus 314 ~~~ 316 (327)
+.+
T Consensus 157 ~~~ 159 (160)
T 2c0j_B 157 IPK 159 (160)
T ss_dssp CCC
T ss_pred eec
Confidence 875
No 11
>2bjn_A TPC6, trafficking protein particle complex subunit 6B; trapp complex, tethering, transport protein; 1.7A {Homo sapiens} PDB: 3kxc_C* 2cfh_C*
Probab=100.00 E-value=6.2e-40 Score=287.92 Aligned_cols=138 Identities=18% Similarity=0.218 Sum_probs=113.4
Q ss_pred hHHHHHHHHHHHHHHHHHHhcCCHH----HHHHHHHHhchhhhHHhHHHHHhhcCCCCccchHHHHHHH-HHHHHHhhCC
Q psy4857 13 VNSELFTLTYGALVSQLLKDYDNVE----DVNKQLDRMGYNIGIRLIEDFLARTQSTRCYDFKETAEKI-QLGFRIYLGI 87 (327)
Q Consensus 13 vn~elfaltyg~lV~ql~~d~e~~~----evn~~L~~mGynIG~RlieefLar~~~~rc~~~~~t~e~I-~~~~K~flg~ 87 (327)
++.|+|+|||||||+|+++++++++ ++|+||++||||||.||+|+|+ |+ .+||++++++++|| |.+||++||+
T Consensus 4 ~s~~~f~~l~~ElV~~~~~~~~~~~~~~~~v~~~Le~mGy~iG~rLiE~~~-r~-~~r~~~~ld~lkfI~k~~Wk~~fgk 81 (160)
T 2bjn_A 4 ADEALFLLLHNEMVSGVYKSAEQGEVENGRCITKLENMGFRVGQGLIERFT-KD-TARFKDELDIMKFICKDFWTTVFKK 81 (160)
T ss_dssp HHHHHHHHHHHHHHHHHHHTCCTTTTTTTHHHHHHHHHHHHHHHHHHTTC-----------CHHHHHHHHTHHHHHHHSS
T ss_pred HHHHHHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHHhhhHhhHHHHHHHH-hc-cCccCCHHHHHHHHHHHHHHHHhCC
Confidence 7999999999999999999998774 6899999999999999999888 75 58999999999999 9999999999
Q ss_pred CCcccccCCCCCeEEEEecCCccccceeccCCCC--CCchhhhhHHHHHhhhhcccceeEEEEeeecc
Q psy4857 88 SPNISNWSAGGDEFSLIFETNPMLEFVELPDNCT--NLKYCNVLTGVLRGACEMVQLDITSKFIQDQL 153 (327)
Q Consensus 88 ~a~v~~~~~~~~e~~l~~d~nPL~~FVelP~~~~--~L~ysn~lcGvirGaLe~v~~~v~~~fv~d~l 153 (327)
+|+.++ ++++++|+|+.+++|+.+|||+|++++ .|||+||+||||||||++++++++|++....+
T Consensus 82 ~~d~L~-t~~~~~y~l~d~~~~~~~~vs~p~~~~~~~l~y~~f~cGiIrGaL~~~g~~~~Vta~~~~~ 148 (160)
T 2bjn_A 82 QIDNLR-TNHQGIYVLQDNKFRLLTQMSAGKQYLEHASKYLAFTCGLIRGGLSNLGIKSIVTAEVSSM 148 (160)
T ss_dssp CCSEEE-EEETTEEEEEESSCGGGTTC-------CTTGGGTHHHHHHHHHHHHHTTCCEEEEEEESST
T ss_pred CCcccc-cCCCCEEEEEcCCchHHhhcCCCHHHHHhcchhHHHHHHHHHHHHHHCCCceEEEEEecCC
Confidence 999876 667899999988899999999999984 89999999999999999999999998876443
No 12
>2bjn_A TPC6, trafficking protein particle complex subunit 6B; trapp complex, tethering, transport protein; 1.7A {Homo sapiens} PDB: 3kxc_C* 2cfh_C*
Probab=100.00 E-value=6.6e-39 Score=281.38 Aligned_cols=150 Identities=18% Similarity=0.222 Sum_probs=118.8
Q ss_pred hhhhhHHhhhHHHHHHHHHhhcCCHH----HHHHHHHHhchhhhHHHHHHHHhhcCCCCccchHHHHHHH-HHHHHHhhC
Q psy4857 161 LRNSELFTLTYGALVSQLLKDYDNVE----DVNKQLDRMGYNIGIRLIEDFLARTQSTRCYDFKETAEKI-QLGFRIYLG 235 (327)
Q Consensus 161 i~~~elf~ltYGalV~Ql~~d~e~~~----evn~qL~~mGynIG~RLieefLak~~~~rc~~f~~t~e~I-k~~~KmflG 235 (327)
+...|+|+||||+||+|+++++++++ +||+||++||||||.||+|+|+ |+ .+||++++|++++| |++||++||
T Consensus 3 m~s~~~f~~l~~ElV~~~~~~~~~~~~~~~~v~~~Le~mGy~iG~rLiE~~~-r~-~~r~~~~ld~lkfI~k~~Wk~~fg 80 (160)
T 2bjn_A 3 MADEALFLLLHNEMVSGVYKSAEQGEVENGRCITKLENMGFRVGQGLIERFT-KD-TARFKDELDIMKFICKDFWTTVFK 80 (160)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTCCTTTTTTTHHHHHHHHHHHHHHHHHHTTC-----------CHHHHHHHHTHHHHHHHS
T ss_pred hHHHHHHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHHhhhHhhHHHHHHHH-hc-cCccCCHHHHHHHHHHHHHHHHhC
Confidence 45789999999999999999998764 6899999999999999999887 65 58999999999999 999999999
Q ss_pred CCCccccCCCCCCeEEEEecCCccccceeccCCCC--CCchhhhhHHHHHhhhhcccceEEEEEeeeccCCCCceEEEEE
Q psy4857 236 ISPNISNWSAGGDEFSLIFETNPMLEFVELPDNCT--NLKYCNVLTGVLRGACEMVQLDITSKFIQDQLKGDNVTELRVK 313 (327)
Q Consensus 236 i~a~v~~~~~~~~ef~l~~d~NPL~~FVelP~~~~--~L~ysn~lcGvIrGaLe~v~~~V~~~fv~d~l~gd~~tei~ik 313 (327)
++|+..+ ++++++|+|+.+++|+.+||++|+++. .|||+|++||||||||++++++++|++....+ +.-.+.||
T Consensus 81 k~~d~L~-t~~~~~y~l~d~~~~~~~~vs~p~~~~~~~l~y~~f~cGiIrGaL~~~g~~~~Vta~~~~~---p~~~F~i~ 156 (160)
T 2bjn_A 81 KQIDNLR-TNHQGIYVLQDNKFRLLTQMSAGKQYLEHASKYLAFTCGLIRGGLSNLGIKSIVTAEVSSM---PACKFQVM 156 (160)
T ss_dssp SCCSEEE-EEETTEEEEEESSCGGGTTC-------CTTGGGTHHHHHHHHHHHHHTTCCEEEEEEESST---TCEEEEEE
T ss_pred CCCcccc-cCCCCEEEEEcCCchHHhhcCCCHHHHHhcchhHHHHHHHHHHHHHHCCCceEEEEEecCC---CceEEEEE
Confidence 9998766 567899999988888999999999984 89999999999999999999998887766443 45677777
Q ss_pred ech
Q psy4857 314 FIK 316 (327)
Q Consensus 314 ~~~ 316 (327)
+.+
T Consensus 157 ~~~ 159 (160)
T 2bjn_A 157 IQK 159 (160)
T ss_dssp EC-
T ss_pred ecc
Confidence 654
No 13
>2kii_A Putative uncharacterized protein; H-NOX, unknown function; HET: HEM; NMR {Shewanella oneidensis} PDB: 2kil_A*
Probab=91.18 E-value=1.5 Score=38.09 Aligned_cols=125 Identities=15% Similarity=0.185 Sum_probs=79.1
Q ss_pred HHHHHHhhcC-CHHHHHHHHHHhchhhhHHHHHHHHh--hcCCCCccchHHHHHH-H-HHHHHHhhCCCC-ccccCCCCC
Q psy4857 174 LVSQLLKDYD-NVEDVNKQLDRMGYNIGIRLIEDFLA--RTQSTRCYDFKETAEK-I-QLGFRIYLGISP-NISNWSAGG 247 (327)
Q Consensus 174 lV~Ql~~d~e-~~~evn~qL~~mGynIG~RLieefLa--k~~~~rc~~f~~t~e~-I-k~~~KmflGi~a-~v~~~~~~~ 247 (327)
||..+++-.. +.++ -|+.+|.-.=..+.+.|=. | ..+...+|...++- | ...=|.|.+..| +..--..++
T Consensus 50 lv~a~s~~~g~~~~~---ll~~fG~~~~~~~~~~y~~~l~-~g~~~~dFL~~ld~~lH~~v~~~yp~~~~Psf~~~~~~~ 125 (181)
T 2kii_A 50 IVQDVAQRLNMPIQD---VVKAFGQFLFNGLASRHTDVVD-KFDDFTSLVMGIHDVIHLEVNKLYHEPSLPHINGQLLPN 125 (181)
T ss_dssp HHHHHHHHTTCCHHH---HHHHHHHHHHHHHHHHHHHHHG-GGSSHHHHHTTTTTTHHHHHHHHSSCSCCCEEEEEECSS
T ss_pred HHHHHHHHHCcCHHH---HHHHHHHHHHHHHHHHhHHHHh-cCCCHHHHHHHHhHHHHHHHHHhCCCCCCCeeEEEECCC
Confidence 4555555554 4444 4666665442233332111 2 33456666666676 8 777788998777 322122344
Q ss_pred CeEEEEecCCccccceeccCCCCCCchhhhhHHHHHhhhhcccceEEEEEeeeccCCCCceEEEEEech
Q psy4857 248 DEFSLIFETNPMLEFVELPDNCTNLKYCNVLTGVLRGACEMVQLDITSKFIQDQLKGDNVTELRVKFIK 316 (327)
Q Consensus 248 ~ef~l~~d~NPL~~FVelP~~~~~L~ysn~lcGvIrGaLe~v~~~V~~~fv~d~l~gd~~tei~ik~~~ 316 (327)
++..|.- ..| . .++.++.|+|+|+-+..+.+|+...++...+|.+...+.|++.+
T Consensus 126 ~~l~l~Y-~S~-----------R--~l~~~~~Gli~~~A~~f~~~v~i~~~~~~~~~~~h~~f~i~~~~ 180 (181)
T 2kii_A 126 NQIALRY-SSP-----------R--RLCFCAEGLLFGAAQHFQQKIQISHDTCMHTGADHCMLIIELQN 180 (181)
T ss_dssp SEEEEEE-ECT-----------T--CCHHHHHHHHHHHHHHTTCCEEEEEEECGGGTCSSEEEEEEECC
T ss_pred CEEEEEE-ecC-----------C--ChHHHHHHHHHHHHHHhCCCeEEEEEeeccCCCCEEEEEEEecC
Confidence 5555541 111 2 28899999999999999999999988877778888888888754
No 14
>2oso_A Hypothetical protein MJ1460; structural genomics, joint center for structural genomics; HET: MSE; 1.90A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} SCOP: d.278.1.3 PDB: 2osd_A*
Probab=89.63 E-value=1.2 Score=38.33 Aligned_cols=104 Identities=15% Similarity=0.226 Sum_probs=71.4
Q ss_pred HHHhchhhhHHHHHHHHhhcCCCCccchHHHHHHHHHHHHH-hhCCCCccccCC--CCCCeEEEEecCCccccceeccCC
Q psy4857 192 LDRMGYNIGIRLIEDFLARTQSTRCYDFKETAEKIQLGFRI-YLGISPNISNWS--AGGDEFSLIFETNPMLEFVELPDN 268 (327)
Q Consensus 192 L~~mGynIG~RLieefLak~~~~rc~~f~~t~e~Ik~~~Km-flGi~a~v~~~~--~~~~ef~l~~d~NPL~~FVelP~~ 268 (327)
|.++||..|.++.+. .+... +.+|+- -+|+- ++.... .+.+.+.+.+.++|.++- |
T Consensus 53 L~~~G~~~G~~l~~~-----------~~~~l----~~~~~~~G~G~l-~i~~~~~~~~~~~~~i~v~~s~e~~~---~-- 111 (163)
T 2oso_A 53 LYEIGEEFGKMLSPK-----------NIEEL----KKIFKLMNFGDL-EIDENKILLKNPPYKIKLSNPPYQWV---S-- 111 (163)
T ss_dssp HHHHHHHHHHHHCCS-----------SHHHH----HHHHHHHTCCEE-ECCHHHHHHSCSCEEEEEESCSCTTC---C--
T ss_pred HHHHHHHHHHHHHHH-----------HHHHH----HHHHHHcCceEE-EEEeccccccCCcEEEEEEeCceeec---C--
Confidence 999999999988641 22233 444432 23331 332221 234568899899987743 3
Q ss_pred CCCCchhhhhHHHHHhhhhcc-cceEEEEEeeeccCCCCceEEEEEechh
Q psy4857 269 CTNLKYCNVLTGVLRGACEMV-QLDITSKFIQDQLKGDNVTELRVKFIKT 317 (327)
Q Consensus 269 ~~~L~ysn~lcGvIrGaLe~v-~~~V~~~fv~d~l~gd~~tei~ik~~~~ 317 (327)
.+=--+++.+|++.|.++.+ +=++.+.=++-.-.||+.-.+.++..+.
T Consensus 112 -~~~pvC~~~~G~~aG~~s~~~g~~~~~~E~~C~a~G~~~C~F~~~~~~~ 160 (163)
T 2oso_A 112 -KEEPIHDFIAGILAGCLEEIFYYYFVVNEVECVSQGKDKCVFEVKEVDE 160 (163)
T ss_dssp -CSSCCCHHHHHHHHHHHHHHHCSEEEEEEEECGGGTCSSEEEEEEEEC-
T ss_pred -CCCceeHHHHHHHHHHHHHHhCCCeEEEEeEeEcCCCCeEEEEEEEHHH
Confidence 23456788999999999987 6668888888899999999999987654
No 15
>2oso_A Hypothetical protein MJ1460; structural genomics, joint center for structural genomics; HET: MSE; 1.90A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} SCOP: d.278.1.3 PDB: 2osd_A*
Probab=86.68 E-value=1.1 Score=38.59 Aligned_cols=121 Identities=15% Similarity=0.192 Sum_probs=75.6
Q ss_pred hhHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHhchhhhHHhHHHHHhhcCCCCccchHHHHHHHHHHHHH-hhCCCCc
Q psy4857 12 KVNSELFTLTYGALVSQLLKDYDNVEDVNKQLDRMGYNIGIRLIEDFLARTQSTRCYDFKETAEKIQLGFRI-YLGISPN 90 (327)
Q Consensus 12 kvn~elfaltyg~lV~ql~~d~e~~~evn~~L~~mGynIG~RlieefLar~~~~rc~~~~~t~e~I~~~~K~-flg~~a~ 90 (327)
.|..++|.++.-+|-..|.. ++.+.. |.++||..|.++.+. .+... +..|+- -+|+- +
T Consensus 27 ~vp~~~f~~l~~~l~~~l~~--~G~~~~---L~~~G~~~G~~l~~~-----------~~~~l----~~~~~~~G~G~l-~ 85 (163)
T 2oso_A 27 KIPMPYFGLFALVIFDKVKE--LGSETS---LYEIGEEFGKMLSPK-----------NIEEL----KKIFKLMNFGDL-E 85 (163)
T ss_dssp CCCHHHHHHHHHHHHHHHC----CCCCC---HHHHHHHHHHHHCCS-----------SHHHH----HHHHHHHTCCEE-E
T ss_pred cccHHHHHHHHHHHHHHHHh--cCHHHH---HHHHHHHHHHHHHHH-----------HHHHH----HHHHHHcCceEE-E
Confidence 36677777776666544433 222211 999999999887641 22233 344432 23331 2
Q ss_pred ccccC--CCCCeEEEEecCCccccceeccCCCCCCchhhhhHHHHHhhhhc-ccceeEEEEeeeccCCCcch
Q psy4857 91 ISNWS--AGGDEFSLIFETNPMLEFVELPDNCTNLKYCNVLTGVLRGACEM-VQLDITSKFIQDQLKGDNVT 159 (327)
Q Consensus 91 v~~~~--~~~~e~~l~~d~nPL~~FVelP~~~~~L~ysn~lcGvirGaLe~-v~~~v~~~fv~d~l~gd~~t 159 (327)
+.... .+++.+.+...++|.++- | .+=--+.+.+|++.|.++. ++=++.+.=++-.-.||+.=
T Consensus 86 i~~~~~~~~~~~~~i~v~~s~e~~~---~---~~~pvC~~~~G~~aG~~s~~~g~~~~~~E~~C~a~G~~~C 151 (163)
T 2oso_A 86 IDENKILLKNPPYKIKLSNPPYQWV---S---KEEPIHDFIAGILAGCLEEIFYYYFVVNEVECVSQGKDKC 151 (163)
T ss_dssp CCHHHHHHSCSCEEEEEESCSCTTC---C---CSSCCCHHHHHHHHHHHHHHHCSEEEEEEEECGGGTCSSE
T ss_pred EEeccccccCCcEEEEEEeCceeec---C---CCCceeHHHHHHHHHHHHHHhCCCeEEEEeEeEcCCCCeE
Confidence 22221 234567888888887743 3 3345678899999999988 77788888888888888754
No 16
>3tfg_A ALR2278 protein; heme-based sensor domain, GAS binding, signaling protein; HET: HEM; 1.90A {Nostoc SP} PDB: 3tfd_A* 3tfe_A* 3tff_A* 2o09_A* 2o0c_A* 2o0g_A* 3l6j_A* 3tf8_A* 3tf9_A* 3tfa_A*
Probab=83.26 E-value=11 Score=32.61 Aligned_cols=91 Identities=11% Similarity=0.172 Sum_probs=65.0
Q ss_pred CCCccchHHHHHHH-HHHHHHhhCCCC-ccccCCCCCCeEEEEecCCccccceeccCCCCCC-chhhhhHHHHHhhhhcc
Q psy4857 213 STRCYDFKETAEKI-QLGFRIYLGISP-NISNWSAGGDEFSLIFETNPMLEFVELPDNCTNL-KYCNVLTGVLRGACEMV 289 (327)
Q Consensus 213 ~~rc~~f~~t~e~I-k~~~KmflGi~a-~v~~~~~~~~ef~l~~d~NPL~~FVelP~~~~~L-~ysn~lcGvIrGaLe~v 289 (327)
.+.-.+|...++-| ...-|.|.+..| +..--..++++..|.- - +.- -++.++.|+|+|+-+.-
T Consensus 91 g~~l~dFL~~ld~lH~~v~~~yp~~~~Psf~~~~~~~~~l~l~Y--------~------S~R~gl~~~~~Gli~~~A~~f 156 (189)
T 3tfg_A 91 GDSLPEFMENLDNLHARVGLSFPQLRPPAFECQHTSSKSMELHY--------Q------STRCGLAPMVLGLLHGLGKRF 156 (189)
T ss_dssp CSSHHHHHHHHHHHHHHHHHHSTTCCCCEEEEEEEETTEEEEEE--------E------CSSSSCHHHHHHHHHHHHHHT
T ss_pred CCCHHHHHHhHHHHHHHHHHhCCCCCCCeEEEEECCCCEEEEEE--------E------CCCCCHHHHHHHHHHHHHHHh
Confidence 44577888888889 888889988776 2211112234444441 1 222 37899999999999988
Q ss_pred cceEEEEEeeeccCCCCceEEEEEechh
Q psy4857 290 QLDITSKFIQDQLKGDNVTELRVKFIKT 317 (327)
Q Consensus 290 ~~~V~~~fv~d~l~gd~~tei~ik~~~~ 317 (327)
+.+|+...++..-.|.+...++|++.+.
T Consensus 157 ~~~v~i~~~~~~~~~~~h~~f~i~~~~~ 184 (189)
T 3tfg_A 157 QTKVEVTQTAFRETGEDHDIFSIKYEDS 184 (189)
T ss_dssp TCEEEEEEEECTTTTSSSEEEEEEEEC-
T ss_pred CCCeEEEEEeccCCCCCeEEEEEEECCC
Confidence 8889988888887888899999988643
No 17
>3sj5_A Methyl-accepting chemotaxis protein; no or O2-sensing protein, signaling protein; HET: HEM; 1.67A {Caldanaerobacter subterraneus} SCOP: d.278.1.1 PDB: 3nvr_A* 3tf0_A* 1u4h_A* 1u56_A* 3m0b_A* 1u55_A* 3tf1_A* 1xbn_A* 3nvu_A* 3eee_A* 3iqb_A* 3lah_A* 3lai_A*
Probab=76.65 E-value=9.4 Score=33.26 Aligned_cols=123 Identities=15% Similarity=0.283 Sum_probs=74.4
Q ss_pred HHHHHHhhcC-CHHHHHHHHHHhchhhhHHHHHHHHhhc-----CCCCccchHHHHHHH-HHHHHHhhCCCCcccc-CCC
Q psy4857 174 LVSQLLKDYD-NVEDVNKQLDRMGYNIGIRLIEDFLART-----QSTRCYDFKETAEKI-QLGFRIYLGISPNISN-WSA 245 (327)
Q Consensus 174 lV~Ql~~d~e-~~~evn~qL~~mGynIG~RLieefLak~-----~~~rc~~f~~t~e~I-k~~~KmflGi~a~v~~-~~~ 245 (327)
||+.+++-.. +.+++ |+.+| .-++. ++.+. ..+...+|...++-| ...-|.|.+..|-.-. -..
T Consensus 51 lv~a~s~~~g~~~~~l---l~~fG----~~~~~-~~~~~y~~~l~g~~~~dFL~~ld~lH~~v~~~yp~~~~Psf~~~~~ 122 (188)
T 3sj5_A 51 IFAKVSEKTGKNVNEI---WREVG----RQNIK-TFSEWFPSYFAGRRLVNFLMMMDEVHLQLTKMIKGATPPRLIAKPV 122 (188)
T ss_dssp HHHHHHHHHCCCHHHH---HHHHH----HHHHH-HHHHHCGGGTTTCCHHHHHHTHHHHHHHTTTTSTTCCCCEEEEEEE
T ss_pred HHHHHHHHHCcCHHHH---HHHHH----HHHHH-HHHHhHHHHhCCCCHHHHHHHHHHHHHHHHHhCCCCCCCeEEEEEC
Confidence 4445555554 44444 44444 44443 33322 235566777777778 7777888777662211 112
Q ss_pred CCCeEEEEecCCccccceeccCCCCCCchhhhhHHHHHhhhhcccceEEEEEeeeccCCC-CceEEEEEechhc
Q psy4857 246 GGDEFSLIFETNPMLEFVELPDNCTNLKYCNVLTGVLRGACEMVQLDITSKFIQDQLKGD-NVTELRVKFIKTI 318 (327)
Q Consensus 246 ~~~ef~l~~d~NPL~~FVelP~~~~~L~ysn~lcGvIrGaLe~v~~~V~~~fv~d~l~gd-~~tei~ik~~~~~ 318 (327)
++++..|. |-+ .. -++.++.|+|+||-+--+.+|+..-++....++ ...++||+|.+..
T Consensus 123 ~~~~l~l~--------Y~S-----~R-gl~~~~~Gli~~aa~~f~~~v~i~~~~~~~~~~~~~~~~rl~f~~~~ 182 (188)
T 3sj5_A 123 AKDAIEME--------YVS-----KR-KMYDYFLGLIEGSSKFFKEEISVEEVERGEKDGFSRLKVRIKFKNPV 182 (188)
T ss_dssp ETTEEEEE--------EEE-----TT-CCHHHHHHHHHHHHHHHTCCEEEEEEEEEEETTEEEEEEEEEESSCC
T ss_pred CCCEEEEE--------EEC-----CC-CHHHHHHHHHHHHHHHhCCCeEEEEecccCCCCceEEEEEEEeeChh
Confidence 23444444 222 23 679999999999999988888888777654433 2667888887654
No 18
>2kii_A Putative uncharacterized protein; H-NOX, unknown function; HET: HEM; NMR {Shewanella oneidensis} PDB: 2kil_A*
Probab=64.92 E-value=26 Score=30.04 Aligned_cols=115 Identities=15% Similarity=0.133 Sum_probs=65.7
Q ss_pred HHHHHHHhcC-CHHHHHHHHHHhchhhhHHhHHHHHh--hcCCCCccchHHHHHH-H-HHHHHHhhCCCCcccc-cCCCC
Q psy4857 25 LVSQLLKDYD-NVEDVNKQLDRMGYNIGIRLIEDFLA--RTQSTRCYDFKETAEK-I-QLGFRIYLGISPNISN-WSAGG 98 (327)
Q Consensus 25 lV~ql~~d~e-~~~evn~~L~~mGynIG~RlieefLa--r~~~~rc~~~~~t~e~-I-~~~~K~flg~~a~v~~-~~~~~ 98 (327)
||+.+++... +.++ -|+.+|.-.=..+.+.|-. | ..+...+|...++- | ...=|.|.+..|-.-. -..++
T Consensus 50 lv~a~s~~~g~~~~~---ll~~fG~~~~~~~~~~y~~~l~-~g~~~~dFL~~ld~~lH~~v~~~yp~~~~Psf~~~~~~~ 125 (181)
T 2kii_A 50 IVQDVAQRLNMPIQD---VVKAFGQFLFNGLASRHTDVVD-KFDDFTSLVMGIHDVIHLEVNKLYHEPSLPHINGQLLPN 125 (181)
T ss_dssp HHHHHHHHTTCCHHH---HHHHHHHHHHHHHHHHHHHHHG-GGSSHHHHHTTTTTTHHHHHHHHSSCSCCCEEEEEECSS
T ss_pred HHHHHHHHHCcCHHH---HHHHHHHHHHHHHHHHhHHHHh-cCCCHHHHHHHHhHHHHHHHHHhCCCCCCCeeEEEECCC
Confidence 5555555553 4443 3555554332222222111 2 22334455555666 7 6777788887763322 22334
Q ss_pred CeEEEEecCCccccceeccCCCCCCchhhhhHHHHHhhhhcccceeEEEEeeeccCCCc
Q psy4857 99 DEFSLIFETNPMLEFVELPDNCTNLKYCNVLTGVLRGACEMVQLDITSKFIQDQLKGDN 157 (327)
Q Consensus 99 ~e~~l~~d~nPL~~FVelP~~~~~L~ysn~lcGvirGaLe~v~~~v~~~fv~d~l~gd~ 157 (327)
++..|. |-| .-.++.++.|+|+|+-+.++.+|+...++..-+|.+
T Consensus 126 ~~l~l~--------Y~S------~R~l~~~~~Gli~~~A~~f~~~v~i~~~~~~~~~~~ 170 (181)
T 2kii_A 126 NQIALR--------YSS------PRRLCFCAEGLLFGAAQHFQQKIQISHDTCMHTGAD 170 (181)
T ss_dssp SEEEEE--------EEC------TTCCHHHHHHHHHHHHHHTTCCEEEEEEECGGGTCS
T ss_pred CEEEEE--------Eec------CCChHHHHHHHHHHHHHHhCCCeEEEEEeeccCCCC
Confidence 455444 332 223889999999999999999999887776666543
No 19
>1hks_A Heat-shock transcription factor; transcription regulation; NMR {Drosophila melanogaster} SCOP: a.4.5.22 PDB: 1hkt_A
Probab=48.08 E-value=18 Score=28.78 Aligned_cols=54 Identities=15% Similarity=0.253 Sum_probs=38.1
Q ss_pred HHHHHHHHHhhCC-CCcccccCCCCCeEEEEecCCccccceeccCCCCCCchhhhhH
Q psy4857 75 EKIQLGFRIYLGI-SPNISNWSAGGDEFSLIFETNPMLEFVELPDNCTNLKYCNVLT 130 (327)
Q Consensus 75 e~I~~~~K~flg~-~a~v~~~~~~~~e~~l~~d~nPL~~FVelP~~~~~L~ysn~lc 130 (327)
.|+...|+|+=.- +.++..|+++++.| +|.|.+-+++- -||.-...=+|+.|+-
T Consensus 6 ~F~~KL~~mv~d~~~~~iI~W~~~G~sF-vI~d~~~F~~~-vLp~yFkh~n~~SFvR 60 (106)
T 1hks_A 6 AFLAKLWRLVDDADTNRLICWTKDGQSF-VIQNQAQFAKE-LLPLNYKHNNMASFIR 60 (106)
T ss_dssp TTHHHHHHHHSSSTTTTTSEESTTTSCE-ECSCCSTTTTT-TSTTTTSCCCHHHHHH
T ss_pred cHHHHHHHHhcCCCCCCEEEEeCCCCEE-EECCHHHHHHH-HhHHhcCCCcHHHHHH
Confidence 3555677777653 35788999999999 55566544432 3788888889988863
No 20
>3sj5_A Methyl-accepting chemotaxis protein; no or O2-sensing protein, signaling protein; HET: HEM; 1.67A {Caldanaerobacter subterraneus} SCOP: d.278.1.1 PDB: 3nvr_A* 3tf0_A* 1u4h_A* 1u56_A* 3m0b_A* 1u55_A* 3tf1_A* 1xbn_A* 3nvu_A* 3eee_A* 3iqb_A* 3lah_A* 3lai_A*
Probab=40.45 E-value=1.1e+02 Score=26.43 Aligned_cols=77 Identities=14% Similarity=0.249 Sum_probs=48.9
Q ss_pred CCccchHHHHHHH-HHHHHHhhCCCCccccc-CCCCCeEEEEecCCccccceeccCCCCCCchhhhhHHHHHhhhhcccc
Q psy4857 65 TRCYDFKETAEKI-QLGFRIYLGISPNISNW-SAGGDEFSLIFETNPMLEFVELPDNCTNLKYCNVLTGVLRGACEMVQL 142 (327)
Q Consensus 65 ~rc~~~~~t~e~I-~~~~K~flg~~a~v~~~-~~~~~e~~l~~d~nPL~~FVelP~~~~~L~ysn~lcGvirGaLe~v~~ 142 (327)
+...+|...++-| ...-|.|.+..|-.-.. ..++++..|. |-| +. -++.++.|+|+||-+-++.
T Consensus 89 ~~~~dFL~~ld~lH~~v~~~yp~~~~Psf~~~~~~~~~l~l~--------Y~S-----~R-gl~~~~~Gli~~aa~~f~~ 154 (188)
T 3sj5_A 89 RRLVNFLMMMDEVHLQLTKMIKGATPPRLIAKPVAKDAIEME--------YVS-----KR-KMYDYFLGLIEGSSKFFKE 154 (188)
T ss_dssp CCHHHHHHTHHHHHHHTTTTSTTCCCCEEEEEEEETTEEEEE--------EEE-----TT-CCHHHHHHHHHHHHHHHTC
T ss_pred CCHHHHHHHHHHHHHHHHHhCCCCCCCeEEEEECCCCEEEEE--------EEC-----CC-CHHHHHHHHHHHHHHHhCC
Confidence 3445555666777 66667776666522221 1123344333 443 33 7799999999999999999
Q ss_pred eeEEEEeeeccCC
Q psy4857 143 DITSKFIQDQLKG 155 (327)
Q Consensus 143 ~v~~~fv~d~l~g 155 (327)
+|+...++..-.+
T Consensus 155 ~v~i~~~~~~~~~ 167 (188)
T 3sj5_A 155 EISVEEVERGEKD 167 (188)
T ss_dssp CEEEEEEEEEEET
T ss_pred CeEEEEecccCCC
Confidence 9998877655433
No 21
>3tfg_A ALR2278 protein; heme-based sensor domain, GAS binding, signaling protein; HET: HEM; 1.90A {Nostoc SP} PDB: 3tfd_A* 3tfe_A* 3tff_A* 2o09_A* 2o0c_A* 2o0g_A* 3l6j_A* 3tf8_A* 3tf9_A* 3tfa_A*
Probab=37.98 E-value=59 Score=27.98 Aligned_cols=79 Identities=11% Similarity=0.159 Sum_probs=51.1
Q ss_pred CCccchHHHHHHH-HHHHHHhhCCCCccccc-CCCCCeEEEEecCCccccceeccCCCCCC-chhhhhHHHHHhhhhccc
Q psy4857 65 TRCYDFKETAEKI-QLGFRIYLGISPNISNW-SAGGDEFSLIFETNPMLEFVELPDNCTNL-KYCNVLTGVLRGACEMVQ 141 (327)
Q Consensus 65 ~rc~~~~~t~e~I-~~~~K~flg~~a~v~~~-~~~~~e~~l~~d~nPL~~FVelP~~~~~L-~ysn~lcGvirGaLe~v~ 141 (327)
+.-.+|...++-| ...=|.+.+..|-.-.. ..++++..|. |- +.- -++.++.|+|+|+-+.++
T Consensus 92 ~~l~dFL~~ld~lH~~v~~~yp~~~~Psf~~~~~~~~~l~l~--------Y~------S~R~gl~~~~~Gli~~~A~~f~ 157 (189)
T 3tfg_A 92 DSLPEFMENLDNLHARVGLSFPQLRPPAFECQHTSSKSMELH--------YQ------STRCGLAPMVLGLLHGLGKRFQ 157 (189)
T ss_dssp SSHHHHHHHHHHHHHHHHHHSTTCCCCEEEEEEEETTEEEEE--------EE------CSSSSCHHHHHHHHHHHHHHTT
T ss_pred CCHHHHHHhHHHHHHHHHHhCCCCCCCeEEEEECCCCEEEEE--------EE------CCCCCHHHHHHHHHHHHHHHhC
Confidence 3456777777888 77778887776632221 1222333333 22 233 378999999999999999
Q ss_pred ceeEEEEeeeccCCCc
Q psy4857 142 LDITSKFIQDQLKGDN 157 (327)
Q Consensus 142 ~~v~~~fv~d~l~gd~ 157 (327)
.+|++..++..-.|.+
T Consensus 158 ~~v~i~~~~~~~~~~~ 173 (189)
T 3tfg_A 158 TKVEVTQTAFRETGED 173 (189)
T ss_dssp CEEEEEEEECTTTTSS
T ss_pred CCeEEEEEeccCCCCC
Confidence 9998887776544443
No 22
>1hks_A Heat-shock transcription factor; transcription regulation; NMR {Drosophila melanogaster} SCOP: a.4.5.22 PDB: 1hkt_A
Probab=31.61 E-value=47 Score=26.26 Aligned_cols=53 Identities=15% Similarity=0.258 Sum_probs=35.9
Q ss_pred HHHHHHHHhhCC-CCccccCCCCCCeEEEEecCCccccceeccCCCCCCchhhhhH
Q psy4857 225 KIQLGFRIYLGI-SPNISNWSAGGDEFSLIFETNPMLEFVELPDNCTNLKYCNVLT 279 (327)
Q Consensus 225 ~Ik~~~KmflGi-~a~v~~~~~~~~ef~l~~d~NPL~~FVelP~~~~~L~ysn~lc 279 (327)
|+..-|+|.=.- +.++..|+++|+.| ++.|.+-+++- -||.-...=+|+.++-
T Consensus 7 F~~KL~~mv~d~~~~~iI~W~~~G~sF-vI~d~~~F~~~-vLp~yFkh~n~~SFvR 60 (106)
T 1hks_A 7 FLAKLWRLVDDADTNRLICWTKDGQSF-VIQNQAQFAKE-LLPLNYKHNNMASFIR 60 (106)
T ss_dssp THHHHHHHHSSSTTTTTSEESTTTSCE-ECSCCSTTTTT-TSTTTTSCCCHHHHHH
T ss_pred HHHHHHHHhcCCCCCCEEEEeCCCCEE-EECCHHHHHHH-HhHHhcCCCcHHHHHH
Confidence 444467776553 34778899999999 55466544432 2788778888888853
No 23
>3ci9_A Heat shock factor-binding protein 1; triple helix, nucleus, transcription; 1.80A {Homo sapiens}
Probab=30.74 E-value=42 Score=23.57 Aligned_cols=28 Identities=18% Similarity=0.462 Sum_probs=21.7
Q ss_pred HHHHHHHHHhcCCH-HHHHHHHHHhchhh
Q psy4857 23 GALVSQLLKDYDNV-EDVNKQLDRMGYNI 50 (327)
Q Consensus 23 g~lV~ql~~d~e~~-~evn~~L~~mGynI 50 (327)
-.+.+|+..+++.. +++-.++|+||-+|
T Consensus 12 q~LL~qmq~kFq~mS~~I~~riDdM~~RI 40 (48)
T 3ci9_A 12 QTLLQQMQDKFQTISDQIIGRIDDMSSRI 40 (48)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHH
Confidence 44677888888766 78889999997654
No 24
>2ve8_A FTSK, DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA-binding, winged helix, bacterial cell division; HET: DNA; 1.4A {Pseudomonas aeruginosa} SCOP: a.4.5.67 PDB: 2ve9_A* 2j5o_A*
Probab=23.16 E-value=1.1e+02 Score=23.31 Aligned_cols=38 Identities=26% Similarity=0.511 Sum_probs=26.5
Q ss_pred HHHHHHHHHHhc-CCHHHHHHHHHHhchhhhHHhHHHHHhh
Q psy4857 22 YGALVSQLLKDY-DNVEDVNKQLDRMGYNIGIRLIEDFLAR 61 (327)
Q Consensus 22 yg~lV~ql~~d~-e~~~evn~~L~~mGynIG~RlieefLar 61 (327)
|-+-|+-.++.- -+++-+.++| ++|||=..||+| -|..
T Consensus 12 y~~A~~~V~~~~~aS~S~lQR~l-rIGYnRAArlid-~lE~ 50 (73)
T 2ve8_A 12 YDEAVRFVTESRRASISAVQRKL-KIGYNRAARMIE-AMEM 50 (73)
T ss_dssp HHHHHHHHHHHCCCCHHHHHHHH-TCCHHHHHHHHH-HHHH
T ss_pred HHHHHHHHHhcCCccHHHHHHHH-ccChHHHHHHHH-HHHH
Confidence 445553333333 4889998888 689999999996 5553
No 25
>2l7q_A Conserved protein found in conjugate transposon; NESG, structural genomics, PSI-biology; NMR {Bacteroides vulgatus}
Probab=20.26 E-value=46 Score=27.83 Aligned_cols=28 Identities=21% Similarity=0.472 Sum_probs=25.5
Q ss_pred cceEEEEEeeeccCCCCceEEEEEechh
Q psy4857 290 QLDITSKFIQDQLKGDNVTELRVKFIKT 317 (327)
Q Consensus 290 ~~~V~~~fv~d~l~gd~~tei~ik~~~~ 317 (327)
+|.|++.-|+..+..+++-|||.++.+.
T Consensus 11 pF~v~tmPV~k~I~~GeTvEIR~~L~re 38 (124)
T 2l7q_A 11 PFTVESMPVADEIAGDETVEIRLEIKPS 38 (124)
T ss_dssp SEEEEECCCCSCCCSSEEEEEEEEEEEC
T ss_pred CceEEEeccccccCCCCeEEEEEEEecC
Confidence 6889999999999999999999999863
No 26
>2ldu_A Heat shock factor protein 1; structural genomics, northeast structural genomics consortiu DNA-binding, PSI-biology, protein structure initiative; NMR {Homo sapiens}
Probab=20.23 E-value=26 Score=28.87 Aligned_cols=61 Identities=15% Similarity=0.345 Sum_probs=42.5
Q ss_pred HHHHHHHHHHhhCC-CCcccccCCCCCeEEEEecCCcccccee--ccCCCCCCchhhhhHHHHHhhhhcccce
Q psy4857 74 AEKIQLGFRIYLGI-SPNISNWSAGGDEFSLIFETNPMLEFVE--LPDNCTNLKYCNVLTGVLRGACEMVQLD 143 (327)
Q Consensus 74 ~e~I~~~~K~flg~-~a~v~~~~~~~~e~~l~~d~nPL~~FVe--lP~~~~~L~ysn~lcGvirGaLe~v~~~ 143 (327)
..|+...|+|+=.- +.++..|+++|+.| +|.|.+ +|.. ||+-...=+|+.|+- -|-|-+|+
T Consensus 18 ~~F~~KL~~ml~d~~~~~iI~W~~~G~sF-vV~d~~---~F~~~vLp~yFkh~nfsSFvR-----QLN~YGF~ 81 (125)
T 2ldu_A 18 PAFLTKLWTLVSDPDTDALICWSPSGNSF-HVFDQG---QFAKEVLPKYFKHNNMASFVR-----QLNMYGFR 81 (125)
T ss_dssp CHHHHHHHHHHHCTTTTTTEEECTTSSEE-EECCHH---HHHHHHHHHHSSCCCHHHHHH-----HHHHTTCE
T ss_pred CcHHHHHHHHhhCCCCCCEEEEcCCCCEE-EEeCHH---HHHHHHhHHhcCCCcHHHHHH-----HhcccCce
Confidence 35677778888764 34788999999999 554533 4654 887777778888874 35555554
Done!