RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy4857
(327 letters)
>3cue_D Transport protein particle 22 kDa subunit; membrane traffic, GEF,
tethering complex, RAB activation, GU nucleotide
exchange factor; HET: PLM; 3.70A {Saccharomyces
cerevisiae}
Length = 193
Score = 245 bits (626), Expect = 9e-82
Identities = 89/168 (52%), Positives = 120/168 (71%), Gaps = 3/168 (1%)
Query: 163 NSELFTLTYGALVSQLLKDYD-NVEDVNKQLDRMGYNIGIRLIEDFLARTQSTRCYDFKE 221
N+ELFTLTYG++V+QL +DY+ + VN L MGYNIG RLIEDFLART RC + +
Sbjct: 26 NTELFTLTYGSIVAQLCQDYERDFNKVNDHLYSMGYNIGCRLIEDFLARTALPRCENLVK 85
Query: 222 TAEKI-QLGFRIYLGISPNISNWSAGGDEFSLIFETNPMLEFVELP-DNCTNLKYCNVLT 279
T+E + + F+I+L I+PNI+NWS D FSLI + NP+ +FVELP D +L Y N+L
Sbjct: 86 TSEVLSKCAFKIFLNITPNITNWSHNKDTFSLILDENPLADFVELPMDAMKSLWYSNILC 145
Query: 280 GVLRGACEMVQLDITSKFIQDQLKGDNVTELRVKFIKTIQDAIPAGED 327
GVL+G+ EMVQLD F+ D L+GD+ TE++VK + ++D IP GED
Sbjct: 146 GVLKGSLEMVQLDCDVWFVSDILRGDSQTEIKVKLNRILKDEIPIGED 193
Score = 230 bits (588), Expect = 6e-76
Identities = 83/165 (50%), Positives = 116/165 (70%), Gaps = 3/165 (1%)
Query: 1 MARQGNRLDSKKVNSELFTLTYGALVSQLLKDYD-NVEDVNKQLDRMGYNIGIRLIEDFL 59
M + + ++K+N+ELFTLTYG++V+QL +DY+ + VN L MGYNIG RLIEDFL
Sbjct: 13 MGEEIWKNKTEKINTELFTLTYGSIVAQLCQDYERDFNKVNDHLYSMGYNIGCRLIEDFL 72
Query: 60 ARTQSTRCYDFKETAEKI-QLGFRIYLGISPNISNWSAGGDEFSLIFETNPMLEFVELP- 117
ART RC + +T+E + + F+I+L I+PNI+NWS D FSLI + NP+ +FVELP
Sbjct: 73 ARTALPRCENLVKTSEVLSKCAFKIFLNITPNITNWSHNKDTFSLILDENPLADFVELPM 132
Query: 118 DNCTNLKYCNVLTGVLRGACEMVQLDITSKFIQDQLKGDNVTELR 162
D +L Y N+L GVL+G+ EMVQLD F+ D L+GD+ TE++
Sbjct: 133 DAMKSLWYSNILCGVLKGSLEMVQLDCDVWFVSDILRGDSQTEIK 177
>1sz7_A BET3 homolog, trafficking protein particle complex subunit 3;
alpha-beta plait, trapp complex, palmitoylated,
transport PR; HET: PLM; 1.55A {Homo sapiens} PDB:
2cfh_A* 2pwn_A* 3kxc_A* 1wc8_A* 2j3w_D* 2j3r_A* 2j3t_A*
1wc9_A* 2c0j_A*
Length = 200
Score = 214 bits (546), Expect = 2e-69
Identities = 109/166 (65%), Positives = 143/166 (86%), Gaps = 1/166 (0%)
Query: 163 NSELFTLTYGALVSQLLKDYDNVEDVNKQLDRMGYNIGIRLIEDFLARTQSTRCYDFKET 222
+SELFTLTYGALV+QL KDY+N EDVNKQLD+MG+NIG+RLIEDFLAR+ RC+DF+ET
Sbjct: 24 SSELFTLTYGALVTQLCKDYENDEDVNKQLDKMGFNIGVRLIEDFLARSNVGRCHDFRET 83
Query: 223 AEKI-QLGFRIYLGISPNISNWSAGGDEFSLIFETNPMLEFVELPDNCTNLKYCNVLTGV 281
A+ I ++ F++YLGI+P+I+NWS GDEFSLI E NP+++FVELPDN ++L Y N+L GV
Sbjct: 84 ADVIAKVAFKMYLGITPSITNWSPAGDEFSLILENNPLVDFVELPDNHSSLIYSNLLCGV 143
Query: 282 LRGACEMVQLDITSKFIQDQLKGDNVTELRVKFIKTIQDAIPAGED 327
LRGA EMVQ+ + +KF+QD LKGD VTE+R++FI+ I+D +PAGE+
Sbjct: 144 LRGALEMVQMAVEAKFVQDTLKGDGVTEIRMRFIRRIEDNLPAGEE 189
Score = 199 bits (507), Expect = 1e-63
Identities = 108/162 (66%), Positives = 138/162 (85%), Gaps = 2/162 (1%)
Query: 3 RQGNR-LDSKKVNSELFTLTYGALVSQLLKDYDNVEDVNKQLDRMGYNIGIRLIEDFLAR 61
RQ NR +SKK++SELFTLTYGALV+QL KDY+N EDVNKQLD+MG+NIG+RLIEDFLAR
Sbjct: 12 RQANRGTESKKMSSELFTLTYGALVTQLCKDYENDEDVNKQLDKMGFNIGVRLIEDFLAR 71
Query: 62 TQSTRCYDFKETAEKI-QLGFRIYLGISPNISNWSAGGDEFSLIFETNPMLEFVELPDNC 120
+ RC+DF+ETA+ I ++ F++YLGI+P+I+NWS GDEFSLI E NP+++FVELPDN
Sbjct: 72 SNVGRCHDFRETADVIAKVAFKMYLGITPSITNWSPAGDEFSLILENNPLVDFVELPDNH 131
Query: 121 TNLKYCNVLTGVLRGACEMVQLDITSKFIQDQLKGDNVTELR 162
++L Y N+L GVLRGA EMVQ+ + +KF+QD LKGD VTE+R
Sbjct: 132 SSLIYSNLLCGVLRGALEMVQMAVEAKFVQDTLKGDGVTEIR 173
>2j3w_B ZGC 92866, trafficking protein particle complex protein 2;
multisubunit tethering factor, trapp, palmitate,
transport, lipoprotein; HET: PLM; 2.1A {Brachydanio
rerio} SCOP: d.278.1.2 PDB: 2j3r_B*
Length = 188
Score = 95.4 bits (237), Expect = 8e-24
Identities = 21/136 (15%), Positives = 49/136 (36%), Gaps = 3/136 (2%)
Query: 10 SKKVNSELFTLTYGALVSQLLKDYDNVEDVNKQLDRMGYNIGIRLIEDFLARTQST-RCY 68
+V+ F L + +V +V ++ +L MG +G L++ + R ++ R
Sbjct: 21 KTEVSVSAFALLFSEMVQYCQSRVYSVSELQARLADMGQGVGASLLDVLVMREKNGKRET 80
Query: 69 DFKETAEKIQL-GFRIYLGISPNISNWSAGGDEFSLIFETNPM-LEFVELPDNCTNLKYC 126
I++ ++ G + + D+ I E P+ ++ +P + L
Sbjct: 81 KVLNILLFIKVNVWKALFGKEADKLEQANDDDKTYYIIEKEPLINAYISVPKENSTLNCA 140
Query: 127 NVLTGVLRGACEMVQL 142
G++
Sbjct: 141 AFTGGIVEAILTHSGF 156
Score = 91.9 bits (228), Expect = 2e-22
Identities = 20/132 (15%), Positives = 47/132 (35%), Gaps = 3/132 (2%)
Query: 163 NSELFTLTYGALVSQLLKDYDNVEDVNKQLDRMGYNIGIRLIEDFLARTQST-RCYDFKE 221
+ F L + +V +V ++ +L MG +G L++ + R ++ R
Sbjct: 25 SVSAFALLFSEMVQYCQSRVYSVSELQARLADMGQGVGASLLDVLVMREKNGKRETKVLN 84
Query: 222 TAEKIQL-GFRIYLGISPNISNWSAGGDEFSLIFETNPM-LEFVELPDNCTNLKYCNVLT 279
I++ ++ G + + D+ I E P+ ++ +P + L
Sbjct: 85 ILLFIKVNVWKALFGKEADKLEQANDDDKTYYIIEKEPLINAYISVPKENSTLNCAAFTG 144
Query: 280 GVLRGACEMVQL 291
G++
Sbjct: 145 GIVEAILTHSGF 156
>2bjn_A TPC6, trafficking protein particle complex subunit 6B; trapp
complex, tethering, transport protein; 1.7A {Homo
sapiens} PDB: 3kxc_C* 2cfh_C*
Length = 160
Score = 54.1 bits (130), Expect = 3e-09
Identities = 28/133 (21%), Positives = 46/133 (34%), Gaps = 10/133 (7%)
Query: 13 VNSELFTLTYGALVSQLLKDYDNVED----VNKQLDRMGYNIGIRLIEDFLARTQSTRCY 68
+ LF L + +VS + K + E +L+ MG+ +G LIE F T R
Sbjct: 4 ADEALFLLLHNEMVSGVYKSAEQGEVENGRCITKLENMGFRVGQGLIERFTKDT--ARFK 61
Query: 69 DFKETAEKIQLGF-RIYLGISPNISNWSAGGDEFSLIFETNPMLEFVELPDNCTNL--KY 125
D + + I F + + G + L +L + KY
Sbjct: 62 DELDIMKFICKDFWTTVFKKQIDNLRTNHQG-IYVLQDNKFRLLTQMSAGKQYLEHASKY 120
Query: 126 CNVLTGVLRGACE 138
G++RG
Sbjct: 121 LAFTCGLIRGGLS 133
Score = 52.6 bits (126), Expect = 1e-08
Identities = 28/132 (21%), Positives = 46/132 (34%), Gaps = 10/132 (7%)
Query: 163 NSELFTLTYGALVSQLLKDYDNVED----VNKQLDRMGYNIGIRLIEDFLARTQSTRCYD 218
+ LF L + +VS + K + E +L+ MG+ +G LIE F T R D
Sbjct: 5 DEALFLLLHNEMVSGVYKSAEQGEVENGRCITKLENMGFRVGQGLIERFTKDT--ARFKD 62
Query: 219 FKETAEKIQLGF-RIYLGISPNISNWSAGGDEFSLIFETNPMLEFVELPDNCTNL--KYC 275
+ + I F + + G + L +L + KY
Sbjct: 63 ELDIMKFICKDFWTTVFKKQIDNLRTNHQG-IYVLQDNKFRLLTQMSAGKQYLEHASKYL 121
Query: 276 NVLTGVLRGACE 287
G++RG
Sbjct: 122 AFTCGLIRGGLS 133
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 53.7 bits (128), Expect = 5e-08
Identities = 57/346 (16%), Positives = 101/346 (29%), Gaps = 115/346 (33%)
Query: 20 LTYGALVSQLL----KDYD--NVEDV------NKQLD---RMGYNI-GIRLIEDFLARTQ 63
Y ++S ++D +V+D+ +++D + G + L Q
Sbjct: 16 YQYKDILSVFEDAFVDNFDCKDVQDMPKSILSKEEIDHIIMSKDAVSGTLRLFWTLLSKQ 75
Query: 64 STRCYDFKETAEKIQLGFRIYLGISPNISNWSAGGDEFSLIFETNPMLEFVELPDNCTN- 122
F E +I F + S + S+ ++E D N
Sbjct: 76 EEMVQKFVEEVLRINYKF-LM-------SPIKTEQRQPSM-----MTRMYIEQRDRLYND 122
Query: 123 ----LKYCNVLTGVLRGACEMVQLDITSKFIQDQLKGDNVTELRNSELFTLTYG------ 172
KY V R + +L+ + ELR ++ + G
Sbjct: 123 NQVFAKY-----NVSRL--QPYL----------KLR-QALLELRPAKNVLI-DGVLGSGK 163
Query: 173 -ALVSQLLKDYDNVEDVNKQLDRMGYNIGIRLIEDF---LARTQSTRCYDFKETAEKIQL 228
+ + Y K +M + I F L S E +Q
Sbjct: 164 TWVALDVCLSY-------KVQCKMDFKI-------FWLNLKNCNSPE-----TVLEMLQ- 203
Query: 229 GFRIYLGISPNISNWSAGGDEFSLIFETNPMLEFVELPDNCTNL----KYCNVLTGVLR- 283
++ I P NW++ D S N L + L Y N L VL
Sbjct: 204 --KLLYQIDP---NWTSRSDHSS-----NIKLRIHSIQAELRRLLKSKPYENCLL-VLLN 252
Query: 284 -----------GACEMVQLDITSKFIQ--DQLKGDNVTELRVKFIK 316
+C+++ +T++F Q D L T + +
Sbjct: 253 VQNAKAWNAFNLSCKIL---LTTRFKQVTDFLSAATTTHISLDHHS 295
Score = 51.4 bits (122), Expect = 3e-07
Identities = 40/284 (14%), Positives = 91/284 (32%), Gaps = 68/284 (23%)
Query: 50 IGIRLIEDFLARTQSTRCYDFKETAEKIQLGFRIYLGISPNISNWSAGGDEFSLIFETNP 109
I I D LA + + + + I+ + + P E+ +F+
Sbjct: 333 IA-ESIRDGLATWDNWKHVNCDKLTTIIESSLNV---LEP---------AEYRKMFD--- 376
Query: 110 MLEFVELPDNCTNLKYCNVLTGVLRGACEMVQLDITSKFIQDQLKGDNVTEL--RNSELF 167
P + ++ T +L ++ D+ + + + L + +
Sbjct: 377 --RLSVFPPS------AHIPTILL----SLIWFDVIKSDVMVVVNKLHKYSLVEKQPKES 424
Query: 168 TLTYGALVSQLLKDYDNVEDVNKQL-DRMGYNIGIRLIEDFLARTQSTRCYDFKETAEKI 226
T++ ++ +L +N +++ + D YNI + +D +
Sbjct: 425 TISIPSIYLELKVKLENEYALHRSIVDH--YNI--------------PKTFDSDDLIPPY 468
Query: 227 QLGFRIYLGISPNISNWSAGG--DEFSLIFETNPMLEFVE--LPDNCTNLKYCNVLTGVL 282
+ Y I ++ N F ++F + F+E + + T + L
Sbjct: 469 LDQY-FYSHIGHHLKNIEHPERMTLFRMVF-LD--FRFLEQKIRHDSTAWNASGSILNTL 524
Query: 283 RGACEMVQLDITSKFIQDQLKGDNVTELRV----KFIKTIQDAI 322
+ QL +I D D E V F+ I++ +
Sbjct: 525 Q------QLKFYKPYICDN---DPKYERLVNAILDFLPKIEENL 559
Score = 42.9 bits (100), Expect = 1e-04
Identities = 53/305 (17%), Positives = 107/305 (35%), Gaps = 117/305 (38%)
Query: 24 ALVSQLLKD----YDNVEDVNKQLDRMGYNIGIRLIEDFLARTQSTRCYDFKETAEKIQL 79
+++++ ++D +DN + VN D++ +IE + E AE ++
Sbjct: 331 SIIAESIRDGLATWDNWKHVNC--DKL-----TTIIE---------SSLNVLEPAEYRKM 374
Query: 80 GFRIYLGISP---NISN------WSAGGDEFSLIFETNPMLEFVELPDNCTNLKYCNVLT 130
F L + P +I W + +++ M+ +L KY L
Sbjct: 375 -FD-RLSVFPPSAHIPTILLSLIWFD-------VIKSDVMVVVNKL------HKYS--L- 416
Query: 131 GVLRGACEM------VQLDITSKFIQDQLKGDNVTELRNSELFTLTYGALVSQ--LLKDY 182
V + E + L++ ++K +N L S +V + K +
Sbjct: 417 -VEKQPKESTISIPSIYLEL-------KVKLENEYALHRS---------IVDHYNIPKTF 459
Query: 183 DNVEDVNKQLDRMGYNIGIRLIEDFLARTQSTRCYDFK--ETAEKIQLGFR-IYLG---- 235
D+ + + LD Y + + K E E++ L FR ++L
Sbjct: 460 DSDDLIPPYLD--QY------FYSHIG-------HHLKNIEHPERMTL-FRMVFLDFRFL 503
Query: 236 ---ISPNISNWSAGGDEFSL----------IFETNP--------MLEFVELPD-NCTNLK 273
I + + W+A G + I + +P +L+F+ + N K
Sbjct: 504 EQKIRHDSTAWNASGSILNTLQQLKFYKPYICDNDPKYERLVNAILDFLPKIEENLICSK 563
Query: 274 YCNVL 278
Y ++L
Sbjct: 564 YTDLL 568
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 45.4 bits (107), Expect = 2e-05
Identities = 55/288 (19%), Positives = 92/288 (31%), Gaps = 86/288 (29%)
Query: 18 FTLTYGALVSQLLKDYDNVEDVNKQLDRMGYNIGIRLIEDFLAR-TQSTRCY---DFKET 73
TL++G+L LL V + I +L E F + T + D E
Sbjct: 9 LTLSHGSLEHVLL--------VPTAS----FFIASQLQEQFNKILPEPTEGFAADD--EP 54
Query: 74 AEKIQLGFRIYLG-ISPNISNWSAGGDEFSLI-----FETNPMLE-----FV-ELP--DN 119
+L + +LG +S + G + L FE + +L ++
Sbjct: 55 TTPAELVGK-FLGYVSSLVEPSKVGQFDQVLNLCLTEFENCYLEGNDIHALAAKLLQEND 113
Query: 120 CTNLKYCNVLTGVLRGACEMVQLDIT----SKFIQD--------------QLKGDN---V 158
T +K ++ + A M + S + Q G+
Sbjct: 114 TTLVKTKELIKNYIT-ARIMAKRPFDKKSNSALFRAVGEGNAQLVAIFGGQ--GNTDDYF 170
Query: 159 TELRNSELFTLTYGALVSQLLKD--------YDNVEDVNKQLDRMGYNIGIRLIEDFLAR 210
ELR +L+ TY LV L+K D K + G N I ++L
Sbjct: 171 EELR--DLYQ-TYHVLVGDLIKFSAETLSELIRTTLDAEKVFTQ-GLN-----ILEWLEN 221
Query: 211 TQSTRCYDFKETAEK-------IQLG----FRIYLGISP-NISNWSAG 246
+T D+ + IQL LG +P + ++ G
Sbjct: 222 PSNTPDKDYLLSIPISCPLIGVIQLAHYVVTAKLLGFTPGELRSYLKG 269
Score = 35.4 bits (81), Expect = 0.025
Identities = 34/180 (18%), Positives = 60/180 (33%), Gaps = 60/180 (33%)
Query: 22 YGALVSQLLKDYDNVEDVNKQLDRMGYNIGIRLIEDFLARTQSTRCYDFKETAEKIQLGF 81
Y AL S L D ++E + + ++ R + + + +LG
Sbjct: 1767 YAALAS--LADVMSIESL------------VEVVF---YRGMTM-----QVAVPRDELGR 1804
Query: 82 RIYLGISPNISNWSAGGDEFSLIF-------ETNPMLEFVELP--DNCTNLKYCNVLTGV 132
Y I+ N +A + +L + T VE N N +Y V G
Sbjct: 1805 SNYGMIAINPGRVAASFSQEALQYVVERVGKRTG---WLVE-IVNYNVENQQY--VAAGD 1858
Query: 133 LRGACEMVQLDITSKFIQDQLKGDNVTELRNSELFTLTYGALVSQLLKDYDNVEDVNKQL 192
LR LD + + + +K L+ ++ L S ++E+V L
Sbjct: 1859 LRA------LDTVTN-VLNFIK------LQKIDIIELQ----KSL------SLEEVEGHL 1895
Score = 31.2 bits (70), Expect = 0.54
Identities = 51/315 (16%), Positives = 88/315 (27%), Gaps = 138/315 (43%)
Query: 22 YGALVSQLLKD-YDNVEDVNKQLDRMGYNIGIRLIEDFLARTQSTRCYDFKE-----TAE 75
Y A++ + + D E + K+++ + R + L+ TQ T E
Sbjct: 1688 YSAMIFETIVDGKLKTEKIFKEINEHSTSYTFRSEKGLLSATQFT-------QPALTLME 1740
Query: 76 KIQLGFRIYL---GISPNISNWSAG---GDEFS--------LIFETNPMLEFVELPDNCT 121
K F L G+ P + + AG G E++ + E VE+
Sbjct: 1741 KAA--FED-LKSKGLIPADATF-AGHSLG-EYAALASLADVMSIE-----SLVEV----- 1785
Query: 122 NLKYCNVLTGVLRGACEMVQLDITSKFIQDQLKGDNVTELRNSELFTLTYGALVSQLLKD 181
+ Y RG +Q + D EL YG +
Sbjct: 1786 -VFY--------RG-----------MTMQVAVPRD--------ELGRSNYGMI------- 1810
Query: 182 YDNVEDVNKQLDRMGYNIGIRLIEDFLARTQSTRCYDFKETAEKIQLGFRIYLGISPNIS 241
+N R+ + ++ + R K T ++ I
Sbjct: 1811 -----AINP--GRVAASFSQEALQYVVERVG-------KRTGWLVE------------IV 1844
Query: 242 NWSAGGDEFSLIFETNPMLEFVELPDNCTNLKYCNVLTGVLRGACEMVQLDITSKFIQDQ 301
N N N +Y V G LR LD + + +
Sbjct: 1845 N------------------------YNVENQQY--VAAGDLRA------LDTVTN-VLNF 1871
Query: 302 LKGDNVT--ELRVKF 314
+K + EL+
Sbjct: 1872 IKLQKIDIIELQKSL 1886
>2c0j_B R32611_2; palmitate; HET: PLM; 2.20A {Homo sapiens} PDB: 2j3t_B*
Length = 160
Score = 39.9 bits (93), Expect = 3e-04
Identities = 20/136 (14%), Positives = 41/136 (30%), Gaps = 15/136 (11%)
Query: 13 VNSELFTLTYGALVSQLLKDYDNVEDVNKQ-----LDRMGYNIGIRLIEDFLARTQSTRC 67
++ LF + +V++L + ++ L+ MG+ +G L E
Sbjct: 3 ADTVLFEFLHTEMVAELWAHDPDPGPGGQKMSLSVLEGMGFRVGQALGERL-----PRET 57
Query: 68 YDFKETAEKIQL----GFRIYLGISPNISNWSAGGDEFSLIFETNPMLEFVELPDNCTNL 123
F+E + ++ + + + G +L
Sbjct: 58 LAFREELDVLKFLCKDLWVAVFQKQMDSLRTNHQGTYVLQDNSFPLLLPMASGLQYLEEA 117
Query: 124 KYCNVLT-GVLRGACE 138
T G+LRGA
Sbjct: 118 PKFLAFTCGLLRGALY 133
Score = 38.3 bits (89), Expect = 0.001
Identities = 20/135 (14%), Positives = 41/135 (30%), Gaps = 15/135 (11%)
Query: 163 NSELFTLTYGALVSQLLKDYDNVEDVNKQ-----LDRMGYNIGIRLIEDFLARTQSTRCY 217
++ LF + +V++L + ++ L+ MG+ +G L E
Sbjct: 4 DTVLFEFLHTEMVAELWAHDPDPGPGGQKMSLSVLEGMGFRVGQALGERL-----PRETL 58
Query: 218 DFKETAEKIQL----GFRIYLGISPNISNWSAGGDEFSLIFETNPMLEFVELPDNCTNLK 273
F+E + ++ + + + G +L
Sbjct: 59 AFREELDVLKFLCKDLWVAVFQKQMDSLRTNHQGTYVLQDNSFPLLLPMASGLQYLEEAP 118
Query: 274 YCNVLT-GVLRGACE 287
T G+LRGA
Sbjct: 119 KFLAFTCGLLRGALY 133
>3cue_B Transport protein particle 31 kDa subunit; membrane traffic, GEF,
tethering complex, RAB activation, GU nucleotide
exchange factor; HET: PLM; 3.70A {Saccharomyces
cerevisiae}
Length = 283
Score = 32.6 bits (73), Expect = 0.16
Identities = 14/56 (25%), Positives = 25/56 (44%)
Query: 11 KKVNSELFTLTYGALVSQLLKDYDNVEDVNKQLDRMGYNIGIRLIEDFLARTQSTR 66
++ + + ++SQL + D +L G+NIGIRL+E R +
Sbjct: 55 QEASLSAMAFLFQEMISQLHRTCKTAGDFETKLSDYGHNIGIRLLELLNFRASVSP 110
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna; HET:
CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 30.7 bits (68), Expect = 0.36
Identities = 9/48 (18%), Positives = 17/48 (35%), Gaps = 22/48 (45%)
Query: 71 KETAEKIQLGFRIYLGISPNISNWSAGGDEFSLIFETNPMLEF---VE 115
K+ +K+Q ++Y + + SA P L +E
Sbjct: 19 KQALKKLQASLKLY---ADD----SA------------PALAIKATME 47
Score = 30.7 bits (68), Expect = 0.36
Identities = 9/48 (18%), Positives = 17/48 (35%), Gaps = 22/48 (45%)
Query: 220 KETAEKIQLGFRIYLGISPNISNWSAGGDEFSLIFETNPMLEF---VE 264
K+ +K+Q ++Y + + SA P L +E
Sbjct: 19 KQALKKLQASLKLY---ADD----SA------------PALAIKATME 47
>3tfg_A ALR2278 protein; heme-based sensor domain, GAS binding, signaling
protein; HET: HEM; 1.90A {Nostoc SP} PDB: 3tfd_A*
3tfe_A* 3tff_A* 2o09_A* 2o0c_A* 2o0g_A* 3l6j_A* 3tf8_A*
3tf9_A* 3tfa_A*
Length = 189
Score = 29.2 bits (65), Expect = 1.3
Identities = 10/67 (14%), Positives = 21/67 (31%), Gaps = 7/67 (10%)
Query: 258 PMLEFVELPDNCTNLKY-------CNVLTGVLRGACEMVQLDITSKFIQDQLKGDNVTEL 310
P E L Y ++ G+L G + Q + + G++
Sbjct: 118 PAFECQHTSSKSMELHYQSTRCGLAPMVLGLLHGLGKRFQTKVEVTQTAFRETGEDHDIF 177
Query: 311 RVKFIKT 317
+K+ +
Sbjct: 178 SIKYEDS 184
>2d1g_A Acid phosphatase; ACPA, decavanadate vanadate, hydrolase; HET: DVT
ETE PGE; 1.75A {Francisella tularensis subsp}
Length = 498
Score = 29.5 bits (65), Expect = 1.7
Identities = 8/48 (16%), Positives = 19/48 (39%), Gaps = 3/48 (6%)
Query: 68 YDFKETAEKIQLGFRIYLGISPNISNWSAGGDEFSLIFETNPMLEFVE 115
F + + G R+ + + IS ++ + +L+F+E
Sbjct: 400 SQFSDIKGRQGYGPRLPMLV---ISPYAKANYVDHSLLNQASVLKFIE 444
Score = 29.5 bits (65), Expect = 1.7
Identities = 8/48 (16%), Positives = 19/48 (39%), Gaps = 3/48 (6%)
Query: 217 YDFKETAEKIQLGFRIYLGISPNISNWSAGGDEFSLIFETNPMLEFVE 264
F + + G R+ + + IS ++ + +L+F+E
Sbjct: 400 SQFSDIKGRQGYGPRLPMLV---ISPYAKANYVDHSLLNQASVLKFIE 444
>3sj5_A Methyl-accepting chemotaxis protein; no or O2-sensing protein,
signaling protein; HET: HEM; 1.67A {Caldanaerobacter
subterraneus} PDB: 3nvr_A* 3tf0_A* 1u4h_A* 1u56_A*
3m0b_A* 1u55_A* 3tf1_A* 1xbn_A* 3nvu_A* 3eee_A* 3iqb_A*
3lah_A* 3lai_A*
Length = 188
Score = 28.3 bits (63), Expect = 3.1
Identities = 10/68 (14%), Positives = 31/68 (45%), Gaps = 7/68 (10%)
Query: 258 PMLEFVELPDNCTNLKY------CNVLTGVLRGACEMVQLDITSKFI-QDQLKGDNVTEL 310
P L + + ++Y + G++ G+ + + +I+ + + + + G + ++
Sbjct: 115 PRLIAKPVAKDAIEMEYVSKRKMYDYFLGLIEGSSKFFKEEISVEEVERGEKDGFSRLKV 174
Query: 311 RVKFIKTI 318
R+KF +
Sbjct: 175 RIKFKNPV 182
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.320 0.138 0.401
Gapped
Lambda K H
0.267 0.0575 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 4,957,086
Number of extensions: 293879
Number of successful extensions: 678
Number of sequences better than 10.0: 1
Number of HSP's gapped: 655
Number of HSP's successfully gapped: 26
Length of query: 327
Length of database: 6,701,793
Length adjustment: 94
Effective length of query: 233
Effective length of database: 4,077,219
Effective search space: 949992027
Effective search space used: 949992027
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 57 (26.1 bits)