RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy4857
         (327 letters)



>d1wc9a_ d.278.1.2 (A:) Trafficking protein particle complex subunit
           3, Bet3 homolog {Mouse (Mus musculus) [TaxId: 10090]}
          Length = 161

 Score =  190 bits (485), Expect = 3e-61
 Identities = 106/158 (67%), Positives = 134/158 (84%), Gaps = 1/158 (0%)

Query: 163 NSELFTLTYGALVSQLLKDYDNVEDVNKQLDRMGYNIGIRLIEDFLARTQSTRCYDFKET 222
           +SELFTLTYGALV+QL KDY+N EDVNKQLDRMGYNIG+RLIEDFLAR+   RC+DF+ET
Sbjct: 4   SSELFTLTYGALVTQLCKDYENDEDVNKQLDRMGYNIGVRLIEDFLARSNVGRCHDFRET 63

Query: 223 AEKIQ-LGFRIYLGISPNISNWSAGGDEFSLIFETNPMLEFVELPDNCTNLKYCNVLTGV 281
           A+ I  + F++YLGI+P+I+NWS  GDEFSLI E NP+++FVELPDN + L Y N+L GV
Sbjct: 64  ADVIAKVAFKMYLGITPSITNWSPAGDEFSLILENNPLVDFVELPDNHSALIYSNLLCGV 123

Query: 282 LRGACEMVQLDITSKFIQDQLKGDNVTELRVKFIKTIQ 319
           LRGA EMVQ+ + +KF+QD LKGD VTE+R++FI+ I+
Sbjct: 124 LRGALEMVQMAVEAKFVQDTLKGDGVTEIRMRFIRRIE 161



 Score =  187 bits (476), Expect = 7e-60
 Identities = 105/153 (68%), Positives = 130/153 (84%), Gaps = 1/153 (0%)

Query: 11  KKVNSELFTLTYGALVSQLLKDYDNVEDVNKQLDRMGYNIGIRLIEDFLARTQSTRCYDF 70
           KK++SELFTLTYGALV+QL KDY+N EDVNKQLDRMGYNIG+RLIEDFLAR+   RC+DF
Sbjct: 1   KKMSSELFTLTYGALVTQLCKDYENDEDVNKQLDRMGYNIGVRLIEDFLARSNVGRCHDF 60

Query: 71  KETAEKIQ-LGFRIYLGISPNISNWSAGGDEFSLIFETNPMLEFVELPDNCTNLKYCNVL 129
           +ETA+ I  + F++YLGI+P+I+NWS  GDEFSLI E NP+++FVELPDN + L Y N+L
Sbjct: 61  RETADVIAKVAFKMYLGITPSITNWSPAGDEFSLILENNPLVDFVELPDNHSALIYSNLL 120

Query: 130 TGVLRGACEMVQLDITSKFIQDQLKGDNVTELR 162
            GVLRGA EMVQ+ + +KF+QD LKGD VTE+R
Sbjct: 121 CGVLRGALEMVQMAVEAKFVQDTLKGDGVTEIR 153


>d2j3wb1 d.278.1.2 (B:21-188) TRAPPC5, similar to trafficking
           protein particle complex 5 {Zebrafish (Brachydanio
           rerio) [TaxId: 7955]}
          Length = 168

 Score =  114 bits (286), Expect = 2e-31
 Identities = 19/136 (13%), Positives = 47/136 (34%), Gaps = 3/136 (2%)

Query: 11  KKVNSELFTLTYGALVSQLLKDYDNVEDVNKQLDRMGYNIGIRLIEDFLART-QSTRCYD 69
            +V+   F L +  +V        +V ++  +L  MG  +G  L++  + R     R   
Sbjct: 2   TEVSVSAFALLFSEMVQYCQSRVYSVSELQARLADMGQGVGASLLDVLVMREKNGKRETK 61

Query: 70  FKETAEKIQL-GFRIYLGISPNISNWSAGGD-EFSLIFETNPMLEFVELPDNCTNLKYCN 127
                  I++  ++   G   +    +   D  + +I +   +  ++ +P   + L    
Sbjct: 62  VLNILLFIKVNVWKALFGKEADKLEQANDDDKTYYIIEKEPLINAYISVPKENSTLNCAA 121

Query: 128 VLTGVLRGACEMVQLD 143
              G++          
Sbjct: 122 FTGGIVEAILTHSGFP 137



 Score =  112 bits (281), Expect = 8e-31
 Identities = 25/155 (16%), Positives = 54/155 (34%), Gaps = 8/155 (5%)

Query: 163 NSELFTLTYGALVSQLLKDYDNVEDVNKQLDRMGYNIGIRLIEDFLART-QSTRCYDFKE 221
           +   F L +  +V        +V ++  +L  MG  +G  L++  + R     R      
Sbjct: 5   SVSAFALLFSEMVQYCQSRVYSVSELQARLADMGQGVGASLLDVLVMREKNGKRETKVLN 64

Query: 222 TAEKIQL-GFRIYLGISPNISNWSAGGD-EFSLIFETNPMLEFVELPDNCTNLKYCNVLT 279
               I++  ++   G   +    +   D  + +I +   +  ++ +P   + L       
Sbjct: 65  ILLFIKVNVWKALFGKEADKLEQANDDDKTYYIIEKEPLINAYISVPKENSTLNCAAFTG 124

Query: 280 GVLRGACEMVQLDITSKFIQDQLKGDNVTELRVKF 314
           G++            +K      KG   T L +KF
Sbjct: 125 GIVEAILTH--SGFPAKVTVHWHKG---TTLMIKF 154


>d1fs1b1 a.157.1.1 (B:86-140) Cyclin A/CDK2-associated p45, Skp1
           {Human (Homo sapiens) [TaxId: 9606]}
          Length = 55

 Score = 23.8 bits (52), Expect = 6.2
 Identities = 9/24 (37%), Positives = 14/24 (58%)

Query: 291 LDITSKFIQDQLKGDNVTELRVKF 314
           LD+T K + + +KG    E+R  F
Sbjct: 31  LDVTCKTVANMIKGKTPEEIRKTF 54


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.320    0.138    0.401 

Gapped
Lambda     K      H
   0.267   0.0618    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,203,671
Number of extensions: 55625
Number of successful extensions: 110
Number of sequences better than 10.0: 1
Number of HSP's gapped: 106
Number of HSP's successfully gapped: 9
Length of query: 327
Length of database: 2,407,596
Length adjustment: 86
Effective length of query: 241
Effective length of database: 1,226,816
Effective search space: 295662656
Effective search space used: 295662656
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 53 (24.4 bits)